Citrus Sinensis ID: 037594

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNNN
cccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccc
cccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEHcHHcccccHHHcccccccHHccccccHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccc
iinsqrndtlpkffQVNEYKALKAKQINEaldeavplphpaiLHEAMryslpggkrlMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIqddlpcldnddlrrgkpsnhkvfgEATAILACQALHCLAMQHIAIIKAKninsavgsegiaagqimdinsegkevslseLNFIHRHKTGKFIEASIVSgviigggneEEIERMRNFGKYVGMAYQLWNDIVDvigspemrektgrdmmrdkatypklvgidgsKKHAKELIAEAKQElayfdptraapldHLVNFIVSFGNNN
iinsqrndtlpkfFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHktgkfieasiVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMRektgrdmmrdkatypklvgidgsKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNNN
IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHiaiikakninSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFieasivsgviigggneeeieRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNNN
***********KFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRR***SNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIG*********************LVGI********ELIAEAKQELAYFDPTRAAPLDHLVNFIVSF****
****************NEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFG***
IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNNN
***********KFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE*R*KTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q94ID7370 Geranylgeranyl pyrophosph N/A no 0.938 0.748 0.491 3e-79
P34802371 Heterodimeric geranylgera yes no 0.942 0.749 0.479 7e-77
Q43133366 Geranylgeranyl pyrophosph N/A no 0.949 0.765 0.478 3e-75
Q42698357 Geranylgeranyl pyrophosph N/A no 0.911 0.753 0.491 9e-75
Q9ZU77347 Geranylgeranyl pyrophosph no no 0.949 0.806 0.471 4e-73
P80042369 Geranylgeranyl pyrophosph N/A no 0.932 0.745 0.474 2e-72
Q9SLG2372 Geranylgeranyl pyrophosph no no 0.932 0.739 0.467 2e-71
O04046376 Heterodimeric geranylgera no no 0.932 0.731 0.460 8e-71
Q9LJY2344 Geranylgeranyl pyrophosph no no 0.949 0.813 0.461 1e-66
Q9LUE1360 Geranylgeranyl pyrophosph no no 0.949 0.777 0.454 3e-64
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 Back     alignment and function desciption
 Score =  295 bits (755), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/293 (49%), Positives = 206/293 (70%), Gaps = 16/293 (5%)

Query: 11  PKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMI 69
           P  F    Y   K   IN+AL+ A+PL  PA +HE+MRYSL  GGKR+   LC+A+CE++
Sbjct: 74  PPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELV 133

Query: 70  GGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
           GG+ S+AM  ACA+E++ TM++I DDLPC+DNDDLRRGKP+NH VFGE  A+LA  AL  
Sbjct: 134 GGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLA 193

Query: 130 LAMQHIAIIKAKNINS------------AVGSEGIAAGQIMDINSEG-KEVSLSELNFIH 176
            A +HIA +   N++S            A+G+EG+ AGQ++DINSEG  EV L +L FIH
Sbjct: 194 FAFEHIA-VSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIH 252

Query: 177 RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKT 235
            HKT K +E ++V G I+GGG +EE+E++R + + +G+ +Q+ +DI+DV   S E+ +  
Sbjct: 253 IHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTA 312

Query: 236 GRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
           G+D++ DK TYPKL+GI+ S++ A++L  EA+++LA FDP +AAPL  L N+I
Sbjct: 313 GKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYI 365
Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate.
Hevea brasiliensis (taxid: 3981)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1 SV=2 Back     alignment and function description
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1 Back     alignment and function description
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 Back     alignment and function description
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2 Back     alignment and function description
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
255580739372 geranyl geranyl pyrophosphate synthase, 0.949 0.752 0.535 4e-87
325516280365 geranylgeranyl pyrophosphate synthase 1 0.955 0.772 0.516 5e-86
290575616365 geranylgeranyl diphosphate synthase [Nic 0.942 0.761 0.534 1e-85
291170333370 geranylgeranyl diphosphate synthase [Jat 0.945 0.754 0.544 2e-85
350538439365 geranylgeranyl pyrophosphate synthase 1 0.955 0.772 0.513 3e-85
224069436314 predicted protein [Populus trichocarpa] 0.928 0.872 0.550 3e-85
224077270365 predicted protein [Populus trichocarpa] 0.949 0.767 0.532 8e-85
79154639367 putative geranylgeranyl pyrophosphate sy 0.972 0.782 0.516 1e-83
4958920367 GGPP synthase [Daucus carota] 0.972 0.782 0.513 5e-83
34484306391 geranylgeranyl diphosphate synthase [Gin 0.932 0.703 0.517 2e-79
>gi|255580739|ref|XP_002531191.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] gi|223529232|gb|EEF31206.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/293 (53%), Positives = 217/293 (74%), Gaps = 13/293 (4%)

Query: 14  FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
           F   EY A KAK +N+ALDEA+PL +P  +H+AMRYSL  GGKR+   LCIA+CE++GG 
Sbjct: 80  FPFEEYMATKAKHVNKALDEAIPLQNPVKIHDAMRYSLLAGGKRVRPVLCIAACELVGGD 139

Query: 73  QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
           ++ AM  ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHK+FGE TAILA  AL   + 
Sbjct: 140 EATAMPAACAMEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKMFGEETAILAGDALLSFSF 199

Query: 133 QHIA----------IIKA-KNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTG 181
           +H+A          +++A   + SAVGSEG+ AGQI+DI+SEGK+VS+S+L +IH HKT 
Sbjct: 200 EHVARSTKNVSPDRVVRAIAELGSAVGSEGLVAGQIVDIDSEGKDVSVSDLEYIHIHKTA 259

Query: 182 KFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMM 240
           K +EAS+V G I+GG ++E +ER+R + + +G+ +Q+ +DI+DV  S E   KT G+D++
Sbjct: 260 KLLEASVVCGAILGGADDESVERVRKYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLI 319

Query: 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
            DKATYPKL+GID ++K A +L+ +A QELAYFD  +AAPL H  N+I S  N
Sbjct: 320 TDKATYPKLMGIDEARKLAAKLVDQANQELAYFDSAKAAPLYHFANYIASRQN 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|325516280|gb|ADZ24718.1| geranylgeranyl pyrophosphate synthase 1 [Solanum pennellii] Back     alignment and taxonomy information
>gi|290575616|gb|ADD49735.1| geranylgeranyl diphosphate synthase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|291170333|gb|ADD82422.1| geranylgeranyl diphosphate synthase [Jatropha curcas] Back     alignment and taxonomy information
>gi|350538439|ref|NP_001234087.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] gi|82547880|gb|ABB82554.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224069436|ref|XP_002302977.1| predicted protein [Populus trichocarpa] gi|222844703|gb|EEE82250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224077270|ref|XP_002305196.1| predicted protein [Populus trichocarpa] gi|222848160|gb|EEE85707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79154639|gb|ABB52066.1| putative geranylgeranyl pyrophosphate synthase [Daucus carota subsp. sativus] Back     alignment and taxonomy information
>gi|4958920|dbj|BAA78047.1| GGPP synthase [Daucus carota] Back     alignment and taxonomy information
>gi|34484306|gb|AAQ72786.1| geranylgeranyl diphosphate synthase [Ginkgo biloba] gi|157072687|gb|ABV08866.1| geranylgeranyl diphosphate synthase [Ginkgo biloba] gi|157072689|gb|ABV08867.1| geranylgeranyl diphosphate synthase [Ginkgo biloba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
UNIPROTKB|P80042369 GGPS1 "Geranylgeranyl pyrophos 0.932 0.745 0.432 5.1e-58
TAIR|locus:2046283347 AT2G18620 [Arabidopsis thalian 0.949 0.806 0.427 1.4e-57
TAIR|locus:2046258372 GGPS4 "geranylgeranyl pyrophos 0.938 0.744 0.412 1.2e-56
TAIR|locus:2048993376 GGPS2 "geranylgeranyl pyrophos 0.938 0.736 0.415 3.3e-56
TAIR|locus:2089626360 AT3G14530 "AT3G14530" [Arabido 0.932 0.763 0.414 6.1e-55
TAIR|locus:2087550344 AT3G20160 [Arabidopsis thalian 0.949 0.813 0.414 6.3e-53
TAIR|locus:2079028360 AT3G32040 [Arabidopsis thalian 0.932 0.763 0.397 1.3e-52
TAIR|locus:2093832357 AT3G29430 [Arabidopsis thalian 0.932 0.770 0.393 5.6e-52
TAIR|locus:2115450371 GGPS1 "geranylgeranyl pyrophos 0.762 0.606 0.442 3.7e-48
UNIPROTKB|Q74CA9297 GSU1765 "Trans-isoprenyl dipho 0.891 0.885 0.372 2.2e-43
UNIPROTKB|P80042 GGPS1 "Geranylgeranyl pyrophosphate synthase, chloroplastic" [Capsicum annuum (taxid:4072)] Back     alignment and assigned GO terms
 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 125/289 (43%), Positives = 176/289 (60%)

Query:    14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
             F    Y   KA  +N+ALDEA+ +  P ++HEAMRYSL  GGKR+   LC+A+CE++GG+
Sbjct:    76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGN 135

Query:    73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
             Q  AM+ ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHK++GE  A+LA  +L   A 
Sbjct:   136 QENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAF 195

Query:   133 QHXXXXXXXXXXS-----------AVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKT 180
             +H          S           ++G+EG+ AGQ+ DI   G   VSL  L FIH HKT
Sbjct:   196 EHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKT 255

Query:   181 GKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDM 239
                                    ++R F + +G+ +Q+ +DI+DV  S E   KT G+D+
Sbjct:   256 AALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 315

Query:   240 MRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
             + DK TYPKL+G++ +K+ A EL  EAKQ+L  FD  +AAPL  L ++I
Sbjct:   316 VVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYI 364
GO:0004161 "dimethylallyltranstransferase activity" evidence=IDA
GO:0004311 "farnesyltranstransferase activity" evidence=IDA
GO:0004337 "geranyltranstransferase activity" evidence=IDA
GO:0006720 "isoprenoid metabolic process" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2046283 AT2G18620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046258 GGPS4 "geranylgeranyl pyrophosphate synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2048993 GGPS2 "geranylgeranyl pyrophosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089626 AT3G14530 "AT3G14530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087550 AT3G20160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079028 AT3G32040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093832 AT3G29430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115450 GGPS1 "geranylgeranyl pyrophosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74CA9 GSU1765 "Trans-isoprenyl diphosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O66126ISPA_MICLU2, ., 5, ., 1, ., 1, 00.42390.87790.8900yesno
P45204ISPA_HAEIN2, ., 5, ., 1, ., 1, 00.38140.83380.8338yesno
Q8K9A0ISPA_BUCAP2, ., 5, ., 1, ., 1, 00.35010.80670.8095yesno
P57537ISPA_BUCAI2, ., 5, ., 1, ., 1, 00.32700.82710.8652yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.67LOW CONFIDENCE prediction!
4th Layer2.5.1.100.824
4th Layer2.5.1.1LOW CONFIDENCE prediction!
3rd Layer2.5.10.766
4th Layer2.5.1.290.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.860.1
hypothetical protein (306 aa)
(Populus trichocarpa)
Predicted Functional Partners:
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•    •• 0.908
fgenesh4_pm.C_LG_IX000553
hypothetical protein (234 aa)
     •• 0.906
eugene3.00012780
annotation not avaliable (326 aa)
  •  • •0.906
gw1.I.925.1
hypothetical protein (242 aa)
     •• 0.906
estExt_fgenesh4_pg.C_280076
dimethylallyltranstransferase (321 aa)
  •  •••0.906
eugene3.00101320
dimethylallyltranstransferase (383 aa)
  •  •••0.905
grail3.0045022601
hypothetical protein (259 aa)
  •  • •0.904
gw1.XV.832.1
hypothetical protein (236 aa)
  •  • •0.904
grail3.0001025501
hypothetical protein (314 aa)
  •  • •0.903
gw1.VII.3333.1
annotation not avaliable (311 aa)
  •  •••0.902

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 5e-66
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 1e-64
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 9e-61
PRK10581299 PRK10581, PRK10581, geranyltranstransferase; Provi 3e-54
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 2e-44
CHL00151323 CHL00151, preA, prenyl transferase; Reviewed 3e-37
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 5e-26
PRK10888323 PRK10888, PRK10888, octaprenyl diphosphate synthas 4e-15
TIGR02748319 TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn 5e-15
PLN02857416 PLN02857, PLN02857, octaprenyl-diphosphate synthas 2e-14
TIGR02749322 TIGR02749, prenyl_cyano, solanesyl diphosphate syn 4e-10
PLN02890422 PLN02890, PLN02890, geranyl diphosphate synthase 6e-06
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information 
 Score =  206 bits (527), Expect = 5e-66
 Identities = 93/262 (35%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 39  HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQS-VAMSMACAIELLVTMAVIQDDL 96
              +L EA+RY L  GGKRL   L + +   +GG +   A+ +A AIELL T +++ DD+
Sbjct: 2   EVELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDDV 61

Query: 97  PCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAV-----GSEG 151
             +DN DLRRGKP+ HKVFG ATAILA   L   A + +A +       A+         
Sbjct: 62  --MDNSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILE 119

Query: 152 IAAGQIMDINSEGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGK 210
           +  GQ++D+ SE   +V+  E   I R KT     A+ + G ++ G +EEE E ++ FG+
Sbjct: 120 LVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGR 179

Query: 211 YVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQE 269
            +G+A+Q+ +DI+D+ G PE   K  G D+   K T P L+ +   ++ A+E   +A + 
Sbjct: 180 NLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREYEEKALEA 236

Query: 270 LAYFDPTRA-APLDHLVNFIVS 290
           L     + A   L  L +FI+ 
Sbjct: 237 LKALPESPAREALRALADFILE 258

These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya. Length = 259
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II Back     alignment and domain information
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase Back     alignment and domain information
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PRK10581299 geranyltranstransferase; Provisional 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
PLN02890422 geranyl diphosphate synthase 100.0
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
KOG0776384 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 100.0
KOG0711347 consensus Polyprenyl synthetase [Coenzyme transpor 100.0
KOG0777322 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.81
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 95.87
PLN02632334 phytoene synthase 92.53
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 89.82
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 87.44
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 87.04
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 86.93
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.9e-69  Score=496.00  Aligned_cols=280  Identities=35%  Similarity=0.572  Sum_probs=252.5

Q ss_pred             cchhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594           14 FQVNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA   90 (295)
Q Consensus        14 ~~~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as   90 (295)
                      |+|..+++...+.|++.|.+.+...  .++.+.++++|++ .||||+||.|++++++++|++.+.+.++|++|||+|+||
T Consensus         1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aS   80 (299)
T PRK10581          1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYS   80 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            4577888889999999999988642  2456999999999 999999999999999999998888999999999999999


Q ss_pred             HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc------------ccccccccccccccee
Q 037594           91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN------------INSAVGSEGIAAGQIM  158 (295)
Q Consensus        91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~------------l~~~~~~~~~~~Gq~~  158 (295)
                      ||||||||||+|++|||+||+|.+||++.||++||+|++.||+++++...+.            ++++.+...++.||.+
T Consensus        81 LiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l  160 (299)
T PRK10581         81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQAL  160 (299)
T ss_pred             HHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence            9999999999999999999999999999999999999999999998753221            2333233679999999


Q ss_pred             cccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCH-HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594          159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNE-EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG  236 (295)
Q Consensus       159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~-~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~  236 (295)
                      |+.+....+++++|.+|+.+|||+||++||.+|++++|+++ +.++.+++||.++|+||||+||++|++++++.+|| .+
T Consensus       161 d~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g  240 (299)
T PRK10581        161 DLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQG  240 (299)
T ss_pred             HHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcc
Confidence            99887655788999999999999999999999999999864 56889999999999999999999999999999999 99


Q ss_pred             hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCC-C-CCchhhhhhhhhccCC
Q 037594          237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPT-R-AAPLDHLVNFIVSFGN  293 (295)
Q Consensus       237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~-~-~~~L~~l~~~~~~R~~  293 (295)
                      +|+++||+|||+++++++|++.+++|.++|++.|..+|+. . ++.|.++++|+++|.+
T Consensus       241 ~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~  299 (299)
T PRK10581        241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK  299 (299)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999643 3 5789999999999975

>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3kra_A295 Mint Heterotetrameric Geranyl Pyrophosphate Synthas 4e-64
2j1p_A293 Geranylgeranyl Diphosphate Synthase From Sinapis Al 3e-57
2j1o_A268 Geranylgeranyl Diphosphate Synthase From Sinapis Al 2e-43
4f62_A317 Crystal Structure Of A Putative Farnesyl-Diphosphat 8e-38
3uca_A324 Crystal Structure Of Isoprenoid Synthase (Target Ef 2e-34
1rtr_A301 Crystal Structure Of S. Aureus Farnesyl Pyrophospha 2e-29
3p8r_A302 Crystal Structure Of Polyprenyl Synthase From Vibri 3e-29
2for_A323 Crystal Structure Of The Shigella Flexneri Farnesyl 5e-29
3m9u_A309 Crystal Structure Of Geranylgeranyl Pyrophosphate S 7e-29
1rqi_A300 Active Conformation Of Farnesyl Pyrophosphate Synth 7e-29
1rqj_A299 Active Conformation Of Farnesyl Pyrophosphate Synth 8e-29
3p41_A303 Crystal Structure Of Polyprenyl Synthetase From Pse 1e-28
3lvs_A298 Crystal Structure Of Farnesyl Diphosphate Synthase 1e-28
3lji_A304 Crystal Structure Of Putative Geranyltranstransfera 2e-28
3ts7_A324 Crystal Structure Of Farnesyl Diphosphate Synthase 3e-28
3p8l_A302 Crystal Structure Of Polyprenyl Synthase From Enter 3e-24
3lom_A313 Crystal Structure Of Geranyltransferase From Legion 2e-23
3llw_A311 Crystal Structure Of Geranyltransferase From Helico 3e-22
3q1o_A310 Crystal Structure Of Geranyltransferase From Helico 3e-22
1wy0_A342 Crystal Structure Of Geranylgeranyl Pyrophosphate S 7e-22
3npk_A291 The Crystal Structure Of Geranyltranstransferase Fr 1e-21
2ftz_A284 Crystal Structure Of Geranyltranstransferase (Ec 2. 3e-18
2h8o_A335 The 1.6a Crystal Structure Of The Geranyltransferas 5e-17
3m0g_A297 Crystal Structure Of Putative Farnesyl Diphosphate 8e-17
3rmg_A334 Crystal Structure Of Geranylgeranyl Pyrophosphate S 1e-12
3nf2_A352 Crystal Structure Of Polyprenyl Synthetase From Str 1e-12
3oyr_A345 Crystal Structure Of Polyprenyl Synthase From Caulo 3e-12
4dhd_A358 Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta 7e-12
3mzv_A341 Crystal Structure Of A Decaprenyl Diphosphate Synth 2e-08
3ipi_A295 Crystal Structure Of A Geranyltranstransferase From 2e-07
3aqb_B325 M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha 4e-06
3lmd_A360 Crystal Structure Of Geranylgeranyl Pyrophosphate S 2e-05
3qkc_B273 Crystal Structure Of Geranyl Diphosphate Synthase S 1e-04
1wmw_A330 Crystal Structure Of Geranulgeranyl Diphosphate Syn 1e-04
3lk5_A380 Crystal Structure Of Putative Geranylgeranyl Pyroph 1e-04
2azk_A289 Crystal Structure For The Mutant W136e Of Sulfolobu 2e-04
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/290 (42%), Positives = 175/290 (60%), Gaps = 14/290 (4%)
Query: 13  FFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG 71
            F  + Y   KAK +N+AL+ AV +  P  +HE+MRYSL  GGKR+   LCIA+CE++GG
Sbjct: 1   MFDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGG 60
Query: 72  SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131
            +S AM  ACA+E++ TM+++ DDLPC+DNDDLRRGKP+NH  FGE+ A+LA  AL   A
Sbjct: 61  DESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFA 120
Query: 132 MQHXXXXXXXX-----------XXSAVGSEGIAAGQIMDINSEG-KEVSLSELNFIHRHK 179
            +H                      ++GSEG+ AGQ++D+ SEG  EV L  L FIH HK
Sbjct: 121 FEHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHK 180
Query: 180 TGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKTGRD 238
           T                       ++R F   +G+ +Q+ +DI+DV   S E+ +  G+D
Sbjct: 181 TAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKD 240
Query: 239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
           ++ DK TYPKL+G++ SK+ A  L  EA+++L +F P RAAPL  L N+I
Sbjct: 241 LVADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYI 290
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 Back     alignment and structure
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 Back     alignment and structure
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 Back     alignment and structure
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 Back     alignment and structure
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 Back     alignment and structure
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 Back     alignment and structure
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 Back     alignment and structure
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 Back     alignment and structure
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 Back     alignment and structure
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 Back     alignment and structure
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 Back     alignment and structure
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 Back     alignment and structure
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 Back     alignment and structure
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 Back     alignment and structure
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 Back     alignment and structure
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 Back     alignment and structure
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 Back     alignment and structure
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 Back     alignment and structure
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 Back     alignment and structure
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 Back     alignment and structure
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 Back     alignment and structure
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 Back     alignment and structure
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 Back     alignment and structure
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 Back     alignment and structure
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 Back     alignment and structure
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 Back     alignment and structure
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 Back     alignment and structure
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 Back     alignment and structure
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 Back     alignment and structure
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 Back     alignment and structure
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 Back     alignment and structure
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small Subunit From Antirrhinum Majus Length = 273 Back     alignment and structure
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 Back     alignment and structure
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 Back     alignment and structure
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 1e-118
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 1e-116
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 1e-115
3lsn_A304 Geranyltranstransferase; structural genomics, prot 1e-115
4f62_A317 Geranyltranstransferase; enzyme function initiativ 1e-114
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 1e-113
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 1e-113
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 1e-113
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 1e-112
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 1e-111
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 1e-110
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 1e-110
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 1e-110
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 1e-106
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 1e-105
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 1e-97
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 4e-87
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 1e-79
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 3e-64
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 4e-61
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 4e-56
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 7e-51
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 2e-44
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 2e-43
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 2e-43
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 5e-39
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 5e-39
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 8e-38
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 6e-36
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 1e-35
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 5e-35
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 2e-34
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 3e-33
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 1e-32
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 2e-32
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 2e-32
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 5e-32
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 1e-31
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 1e-31
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 4e-29
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 5e-28
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 2e-27
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 2e-25
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 Back     alignment and structure
 Score =  340 bits (874), Expect = e-118
 Identities = 137/293 (46%), Positives = 189/293 (64%), Gaps = 29/293 (9%)

Query: 14  FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGS 72
                Y   KA  +N+ALD AVPL  P  +HEAMRYS L GGKR+   LCIA+CE++GG 
Sbjct: 11  TDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE 70

Query: 73  QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
           +S+AM  ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHKV+GE  A+LA  AL   A 
Sbjct: 71  ESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAF 130

Query: 133 QHIAIIKAKNINS------------AVGSEGIAAGQIMDINSEGK---EVSLSELNFIHR 177
           +H+A   +  ++             A+G+EG+ AGQ++DI+SEG     V L  L FIH 
Sbjct: 131 EHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHL 190

Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGR 237
           HKT   +EAS V G IIGGG++EEIER+R F + +G+ +Q+ +DI+DV  S         
Sbjct: 191 HKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS--------- 241

Query: 238 DMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVS 290
                K TYPKL+G++ S++ A++L  EA+ +L  FD  + APL  L N+I +
Sbjct: 242 ----SKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIAN 290
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 100.0
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 100.0
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
Probab=100.00  E-value=5e-72  Score=519.11  Aligned_cols=280  Identities=35%  Similarity=0.606  Sum_probs=235.8

Q ss_pred             ccchhhhhhhhHHhHHHHhhhcCCCCC-hHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594           13 FFQVNEYKALKAKQINEALDEAVPLPH-PAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA   90 (295)
Q Consensus        13 ~~~~~~~l~~~~~~i~~~l~~~~~~~~-~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as   90 (295)
                      ||+|..++++..+.|++.|.+.++... |+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||
T Consensus         2 ~m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aS   81 (317)
T 4f62_A            2 VMNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYS   81 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999997632 678999999999 999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc-c---------ccccccccccccccceecc
Q 037594           91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA-K---------NINSAVGSEGIAAGQIMDI  160 (295)
Q Consensus        91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~-~---------~l~~~~~~~~~~~Gq~~dl  160 (295)
                      ||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... +         .++++++..+|+.||.+|+
T Consensus        82 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl  161 (317)
T 4f62_A           82 LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDL  161 (317)
T ss_dssp             HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred             HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999998532 1         1455554467999999999


Q ss_pred             cCCCceeeccccchhhhccccCeeeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhh
Q 037594          161 NSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRD  238 (295)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~D  238 (295)
                      .+....+++++|..|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|
T Consensus       162 ~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D  241 (317)
T 4f62_A          162 SSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD  241 (317)
T ss_dssp             HTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             hccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchH
Confidence            987655889999999999999999999999999999 79999999999999999999999999999999999999 9999


Q ss_pred             hhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594          239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN  293 (295)
Q Consensus       239 l~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~  293 (295)
                      +++||+|||+++|+++|++.++++.++|++.|+.||+ .++.|.++++|+++|.+
T Consensus       242 l~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~  295 (317)
T 4f62_A          242 AEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH  295 (317)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999986 57899999999999986
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1rqja_299 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-44
d1rtra_290 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-40
d1v4ea_280 a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th 1e-24
d1fpsa_348 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 2e-21
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 1e-16
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Escherichia coli [TaxId: 562]

 Score =  151 bits (382), Expect = 1e-44
 Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 19/287 (6%)

Query: 23  KAKQINEALDEAVP--LPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
             KQ N+AL   +         + E M+Y  L GGKRL   L  A+  M G S +   + 
Sbjct: 10  CVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAP 69

Query: 80  ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK 139
           A A+E +   ++I DDLP +D+DDLRRG P+ H  FGEA AILA  AL  LA   ++   
Sbjct: 70  AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129

Query: 140 AKNIN------------SAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEAS 187
              ++            SA G  G+  GQ +D+++EGK V L  L  IHRHKTG  I A+
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 189

Query: 188 IVSGVIIGGGNEEEIERM-RNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
           +  G +  G        +   + + +G+A+Q+ +DI+DV+G +  + ++ G D    K+T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249

Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVNFIVS 290
           YP L+G++ ++K A++LI +A+Q L          + L+ L ++I+ 
Sbjct: 250 YPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ 296
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 92.14
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-66  Score=475.67  Aligned_cols=280  Identities=35%  Similarity=0.570  Sum_probs=252.1

Q ss_pred             cchhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594           14 FQVNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA   90 (295)
Q Consensus        14 ~~~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as   90 (295)
                      |+|.++++...+.|++.|.+.++..  .+..+.++++|.+ +||||+||.|++++++++|++.+.++++|+|+||+|+||
T Consensus         1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKrlRp~l~~~~~~~~g~~~~~~~~~A~aiEllH~as   80 (299)
T d1rqja_           1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS   80 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhhCCcccHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence            7889999999999999999987543  2345999999999 999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc------------ccccccccccccccee
Q 037594           91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN------------INSAVGSEGIAAGQIM  158 (295)
Q Consensus        91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~------------l~~~~~~~~~~~Gq~~  158 (295)
                      ||||||||+|++++|||+||+|.+||+++||++||+|++.+++.++++..+.            ++.+.+...+++||.+
T Consensus        81 LiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~GQ~l  160 (299)
T d1rqja_          81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL  160 (299)
T ss_dssp             HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred             HHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999998889999999999999999999999999999999999999875432            2223233678999999


Q ss_pred             cccCCCceeeccccchhhhccccCeeeeeeeeeeEe-cCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594          159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVII-GGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG  236 (295)
Q Consensus       159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~l-ag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~  236 (295)
                      |+.+....+++++|..|+.+|||+||.+++.+|+.+ ++.+.+..+.+++||.++|+||||+||++|++++++.+|| .+
T Consensus       161 dl~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~~~~~GK~~g  240 (299)
T d1rqja_         161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG  240 (299)
T ss_dssp             HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred             HHHhccCcccHHHHHHHHHHHHhhHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCchh
Confidence            998876667889999999999999999999988765 4556666788999999999999999999999999999999 99


Q ss_pred             hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCC--CCCCchhhhhhhhhccCC
Q 037594          237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDP--TRAAPLDHLVNFIVSFGN  293 (295)
Q Consensus       237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~~  293 (295)
                      +|+++||+|||++++++++++.++++++++++.|..++.  ..++.|.++++|+++|+|
T Consensus       241 ~Dl~egK~Tlp~i~~le~a~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~K  299 (299)
T d1rqja_         241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK  299 (299)
T ss_dssp             HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred             hHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999853  345789999999999986
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure