Citrus Sinensis ID: 037974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MAARPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQEAPLVEKEQQLGEEQKA
ccccccccccHHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEcccccccEEcccccccccccccHHHHHHHHHHHHc
ccHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccccEEEcccccHHcccccccHHHHHHHHHHcc
maarpgiilFPAFVRTLLLDIFWLNELFasipqytgnetitLQDCEVAlspfqedarsgsitpAAEDCIKKLRDEFYTrmsddlntshiLTGAFLDALKFInnskkqpkQQQLSLIESLLKIENEVKVVLDVLgllpegstySEVLQQLKDKALKRAELAENDVLHLIEERATakknkdfsksdQIRADLTRKGIALMDVRketiwrpcvpveqeqeaplveKEQQLGEEQKA
maarpgiiLFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFqedarsgsitpaaeDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIeeratakknkdfsksdqiradltrkgiALMDVRKETIWRPcvpveqeqeaplvekeqqlgeeqka
MAARPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSkkqpkqqqLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQEAPLVEKEQQLGEEQKA
*****GIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQ********TPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINN*********LSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLI********************DLTRKGIALMDVRKETIWRPCVPV*********************
***RPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDA*******A*EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKK*********IESLLKIENEVKVVLDVLGLLPEGSTYSEVL************LAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC************************
MAARPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNS********LSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQEAPLVEK**********
MAARPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPV*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAARPGIILFPAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQEAPLVEKEQQLGEEQKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
C6E7P0480 Cysteine--tRNA ligase OS= yes no 0.648 0.314 0.319 1e-10
Q6AJ23489 Cysteine--tRNA ligase OS= yes no 0.703 0.335 0.316 1e-10
A5G949494 Cysteine--tRNA ligase OS= yes no 0.549 0.259 0.312 2e-10
B5EEK6480 Cysteine--tRNA ligase OS= yes no 0.682 0.331 0.304 4e-10
A1AK01493 Cysteine--tRNA ligase OS= yes no 0.613 0.290 0.302 7e-10
Q2SK40467 Cysteine--tRNA ligase OS= yes no 0.553 0.276 0.323 8e-10
Q1QVV6461 Cysteine--tRNA ligase OS= yes no 0.570 0.288 0.326 1e-09
B9LZV4494 Cysteine--tRNA ligase OS= yes no 0.549 0.259 0.305 3e-09
B5YID4487 Cysteine--tRNA ligase OS= yes no 0.557 0.266 0.338 5e-09
Q3A8C9481 Cysteine--tRNA ligase OS= yes no 0.690 0.334 0.280 1e-08
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3 SV=1 Back     alignment and function desciption
 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 48  ALSPFQEDARSGSITPAAEDC------IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFI 101
           AL+   E   SG+ TPA  D       +      F   M DD NT+  L G   D ++ I
Sbjct: 322 ALAGIDERLASGAHTPADADNTEFAEKVAGFAGRFGDAMDDDFNTALAL-GHLFDLVRVI 380

Query: 102 NNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAE 161
           N   ++       L+E   K++ EV  +  VLG+    S  +  LQ++KD+     E++ 
Sbjct: 381 N---RELPTASTGLLE---KVKAEVAKMAAVLGICD--SVPAAFLQRMKDRKTSDMEMSA 432

Query: 162 NDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
            ++  LI ERA A+K K+F + D+IR  L  K I L+D  + T W+
Sbjct: 433 EEIETLIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTWK 478

Geobacter sp. (strain M21) (taxid: 443144)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|Q1QVV6|SYC_CHRSD Cysteine--tRNA ligase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1 Back     alignment and function description
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=cysS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
255585350 530 cysteinyl-tRNA synthetase, putative [Ric 0.918 0.403 0.587 6e-62
359475690 513 PREDICTED: cysteinyl-tRNA synthetase-lik 0.905 0.411 0.575 5e-54
359496172 513 PREDICTED: cysteinyl-tRNA synthetase-lik 0.905 0.411 0.580 1e-53
449464950 562 PREDICTED: cysteine--tRNA ligase-like [C 0.944 0.391 0.522 2e-51
356575566 553 PREDICTED: cysteinyl-tRNA synthetase-lik 0.918 0.386 0.506 1e-48
224111652 532 predicted protein [Populus trichocarpa] 0.914 0.400 0.517 4e-48
356536300 548 PREDICTED: cysteinyl-tRNA synthetase-lik 0.935 0.397 0.497 2e-46
357444709 552 Cysteinyl-tRNA synthetase [Medicago trun 0.914 0.385 0.508 2e-45
15241557 511 cysteinyl-tRNA synthetase [Arabidopsis t 0.746 0.340 0.551 3e-45
297801734 511 tRNA synthetase class I (C) family prote 0.729 0.332 0.558 1e-44
>gi|255585350|ref|XP_002533372.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223526794|gb|EEF29017.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 171/235 (72%), Gaps = 21/235 (8%)

Query: 11  PAFVRTLLLDIFWLNELFASIPQY-TGNETI-----TLQDCEVALSPFQ---------ED 55
           P  VR  L+   + + L  ++ Q  + ++ I     TLQDCE ALS FQ         ++
Sbjct: 289 PLAVRHFLISAHYRSPLNYTVFQLESASDAIFYIYQTLQDCEDALSMFQDGSLKEGAAQN 348

Query: 56  ARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNS-----KKQPKQ 110
           ++   IT  A+ CI KLRDEF T+MSDDL+TSHILTGAF DALKFIN+S     KK  K 
Sbjct: 349 SKVVGITADAKKCINKLRDEFETKMSDDLSTSHILTGAFQDALKFINSSISMLKKKLQKP 408

Query: 111 QQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEE 170
           QQLSLI+SL +IE E+K+VL++LGLLP G TY+E+LQQLKDKALKRA + E+DVL  IEE
Sbjct: 409 QQLSLIQSLTEIEREIKLVLNILGLLPPG-TYAEILQQLKDKALKRAGVTEDDVLRSIEE 467

Query: 171 RATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQEAPLVEKEQ 225
           RA A+KNK+FS+SDQ+RA+L  KGIALMDV KET+WRPCVPVEQEQEA  V K+Q
Sbjct: 468 RAQARKNKEFSRSDQVRANLAAKGIALMDVGKETVWRPCVPVEQEQEAVSVVKDQ 522

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475690|ref|XP_003631732.1| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|296087508|emb|CBI34097.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496172|ref|XP_002262997.2| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|297735988|emb|CBI23962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464950|ref|XP_004150192.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] gi|449508099|ref|XP_004163218.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356575566|ref|XP_003555910.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|224111652|ref|XP_002315932.1| predicted protein [Populus trichocarpa] gi|222864972|gb|EEF02103.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536300|ref|XP_003536677.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|357444709|ref|XP_003592632.1| Cysteinyl-tRNA synthetase [Medicago truncatula] gi|355481680|gb|AES62883.1| Cysteinyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|15241557|ref|NP_198699.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|192807340|gb|ACF06122.1| At5g38830 [Arabidopsis thaliana] gi|332006981|gb|AED94364.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297801734|ref|XP_002868751.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297314587|gb|EFH45010.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2152237511 AT5G38830 "AT5G38830" [Arabido 0.746 0.340 0.530 3.2e-42
UNIPROTKB|Q0IZQ2569 Os09g0556500 "Os09g0556500 pro 0.729 0.298 0.451 2.2e-31
TAIR|locus:2042521563 SYCO ARATH "cysteinyl t-RNA sy 0.742 0.307 0.429 4.6e-29
TAIR|locus:2078406489 AT3G56300 "AT3G56300" [Arabido 0.497 0.237 0.487 1.8e-20
UNIPROTKB|Q7G2N5491 LOC_Os10g32570 "tRNA synthetas 0.716 0.340 0.365 6.3e-20
UNIPROTKB|A8JCV0637 CHLREDRAFT_153062 "Cysteinyl-t 0.321 0.117 0.413 8.3e-11
UNIPROTKB|Q747A2481 cysS "Cysteine--tRNA ligase" [ 0.549 0.266 0.335 1.4e-06
TIGR_CMR|GSU_3365481 GSU_3365 "cysteinyl-tRNA synth 0.549 0.266 0.335 1.4e-06
UNIPROTKB|O67163495 cysS "Cysteine--tRNA ligase" [ 0.772 0.363 0.267 1.4e-06
UNIPROTKB|Q8A2F4493 cysS "Cysteine--tRNA ligase" [ 0.746 0.352 0.285 5.6e-06
TAIR|locus:2152237 AT5G38830 "AT5G38830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 97/183 (53%), Positives = 125/183 (68%)

Query:    41 TLQDCEVALSPFQ----EDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLD 96
             TLQD +  LSP+Q    ED      T   +D IKKL+ EF ++M DDLNT+HILTGA+ D
Sbjct:   327 TLQDLDEGLSPYQDALSEDGGKSEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTGAYQD 386

Query:    97 ALKFINNSXXXXXXXX----LSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDK 152
             ALKFIN S            +S++ SL++IE   + VLDVLGLL   S Y+E+L+++K K
Sbjct:   387 ALKFINASLSKLKKMQKKQRMSMLVSLVEIEKAAREVLDVLGLLTTLS-YAEILKEMKLK 445

Query:   153 ALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPV 212
              L RAE+ E  +  LIEER TA+KNKDF+KSD+IR  LTRKGIALMD+ KET+WRPC P 
Sbjct:   446 TLIRAEIGEEGISQLIEERITARKNKDFAKSDEIREKLTRKGIALMDIGKETVWRPCFPS 505

Query:   213 EQE 215
             + +
Sbjct:   506 QAD 508
GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA;ISS;IBA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005739 "mitochondrion" evidence=IBA
GO:0005829 "cytosol" evidence=IDA;IBA
GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA;ISS;IBA
GO:0009507 "chloroplast" evidence=IBA
GO:0046686 "response to cadmium ion" evidence=IEP
UNIPROTKB|Q0IZQ2 Os09g0556500 "Os09g0556500 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078406 AT3G56300 "AT3G56300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7G2N5 LOC_Os10g32570 "tRNA synthetase class I family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8JCV0 CHLREDRAFT_153062 "Cysteinyl-tRNA synthetase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|O67163 cysS "Cysteine--tRNA ligase" [Aquifex aeolicus VF5 (taxid:224324)] Back     alignment and assigned GO terms
UNIPROTKB|Q8A2F4 cysS "Cysteine--tRNA ligase" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013689001
SubName- Full=Chromosome undetermined scaffold_528, whole genome shotgun sequence; (513 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036298001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa)
•     • 0.882
GSVIVG00022843001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)
• •   • 0.853
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
      • 0.780
GSVIVG00002540001
RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)
•     • 0.730
GSVIVG00028238001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (516 aa)
   •  • 0.713
GSVIVG00037704001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (529 aa)
   •  • 0.707
GSVIVG00016648001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa)
   •  • 0.706
GSVIVG00035363001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)
•     • 0.703
GSVIVG00002216001
SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa)
      • 0.668
GSVIVG00000425001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa)
   •  • 0.636

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
PLN02946557 PLN02946, PLN02946, cysteine-tRNA ligase 1e-51
PRK00260463 PRK00260, cysS, cysteinyl-tRNA synthetase; Validat 2e-22
COG0215464 COG0215, CysS, Cysteinyl-tRNA synthetase [Translat 3e-17
TIGR00435464 TIGR00435, cysS, cysteinyl-tRNA synthetase 4e-15
cd07963156 cd07963, Anticodon_Ia_Cys, Anticodon-binding domai 3e-14
PRK14536490 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi 2e-09
PRK14534481 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi 3e-05
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase Back     alignment and domain information 
 Score =  175 bits (444), Expect = 1e-51
 Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 9/182 (4%)

Query: 41  TLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKF 100
           TL DCE +L          S+ P   +CI K  DEF T MSDDL+T  +   A  + LK 
Sbjct: 379 TLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTP-VALAALSEPLKT 437

Query: 101 INN---SKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRA 157
           IN+   ++K  KQ++   +ESL  +E +++ VL VLGL+P  ++YSE LQQL++KAL+RA
Sbjct: 438 INDLLHTRKGKKQEKR--LESLAALEKKIRDVLSVLGLMP--TSYSEALQQLREKALRRA 493

Query: 158 ELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPV-EQEQ 216
           +L E  VL  IEER  A+KNK++ KSD IR DL   GIALMD    T WRP +P+  QEQ
Sbjct: 494 KLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQ 553

Query: 217 EA 218
            A
Sbjct: 554 VA 555

Length = 557
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 100.0
PLN02946557 cysteine-tRNA ligase 100.0
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.98
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.98
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 99.97
cd07963156 Anticodon_Ia_Cys Anticodon-binding domain of cyste 99.96
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.91
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.65
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.62
PF0919063 DALR_2: DALR domain; InterPro: IPR015273 The amino 99.52
smart0084056 DALR_2 This DALR domain is found in cysteinyl-tRNA 99.3
cd0795581 Anticodon_Ia_Cys_like Anticodon-binding domain of 99.08
PRK11893511 methionyl-tRNA synthetase; Reviewed 98.42
PRK00390805 leuS leucyl-tRNA synthetase; Validated 98.27
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 98.11
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 98.05
PRK13208800 valS valyl-tRNA synthetase; Reviewed 98.0
PLN02843 974 isoleucyl-tRNA synthetase 97.9
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 97.77
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 97.61
PLN02943 958 aminoacyl-tRNA ligase 97.57
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 97.57
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 97.52
PRK12267648 methionyl-tRNA synthetase; Reviewed 97.47
PRK12268556 methionyl-tRNA synthetase; Reviewed 97.29
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 97.24
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 97.19
PLN02224616 methionine-tRNA ligase 97.15
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 97.06
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 97.06
PLN02610 801 probable methionyl-tRNA synthetase 97.02
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 96.98
PLN02882 1159 aminoacyl-tRNA ligase 96.94
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 96.87
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 96.8
PRK05729874 valS valyl-tRNA synthetase; Reviewed 96.71
PRK12451562 arginyl-tRNA synthetase; Reviewed 96.62
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 96.62
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 96.49
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 96.21
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 95.91
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 95.02
PLN02563963 aminoacyl-tRNA ligase 94.64
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 94.17
PLN02286576 arginine-tRNA ligase 94.0
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 93.79
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 93.2
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 92.42
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 91.79
PLN02381 1066 valyl-tRNA synthetase 91.5
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 89.52
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 88.51
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 86.62
PLN02959 1084 aminoacyl-tRNA ligase 85.51
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 85.44
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 84.16
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 84.0
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 82.6
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-36  Score=276.30  Aligned_cols=173  Identities=27%  Similarity=0.365  Sum_probs=131.0

Q ss_pred             CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974            8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN   85 (233)
Q Consensus         8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN   85 (233)
                      +|+|++||||||++|||+|||||++.|++|  .+++|++++..+......   .  .  .. .......+|++||+||||
T Consensus       285 ~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~---~--~--~~-~~~~~~~~f~~al~DDfn  356 (464)
T COG0215         285 KYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD---A--E--LA-DLKEFEARFREALDDDFN  356 (464)
T ss_pred             hcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc---c--c--cc-hhHHHHHHHHHHHHhccC
Confidence            489999999999999999999999999999  678888887665522111   0  0  00 235667789999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHcccc-----CCCCCCchHHHHHHHHHHHHHHhhhc
Q 037974           86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLG-----LLPEGSTYSEVLQQLKDKALKRAELA  160 (233)
Q Consensus        86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLG-----l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (233)
                      ||.|+++ |+++++.+|........       ....+...+..++.+||     +.+..  ..           ......
T Consensus       357 t~~al~~-l~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~l~~~~~~--~~-----------~~~~~~  415 (464)
T COG0215         357 TPKALAV-LFELAKEINRLLEEGKS-------DAKAVLSALKALLAILGLKVLGLFPQS--GA-----------QEDESD  415 (464)
T ss_pred             cHHHHHH-HHHHHHHHhhhhhcccc-------chHHHHHHHHHHHHHhCchhhcccccc--cc-----------ccccch
Confidence            9999999 99999999887654321       11122344444444444     44321  00           011124


Q ss_pred             HHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974          161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC  209 (233)
Q Consensus       161 ~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~  209 (233)
                      .+.|+.||++|.+||++|||++||+|||+|.++||+|+|+|+||+|++.
T Consensus       416 ~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~gt~w~~~  464 (464)
T COG0215         416 DEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDGTTWRRK  464 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCCeEEEeC
Confidence            6889999999999999999999999999999999999999999999863

>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases Back     alignment and domain information
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3tqo_A462 Structure Of The Cysteinyl-Trna Synthetase (Cyss) F 6e-06
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 74  DEFYTRMSDDLNTSHILTGAFLDALKFINNSXXXXXXXXLSLIESLLKIENEVKVVLDVL 133
           D FY    DD NT  I      + ++ IN           + IE    +  E+K + ++ 
Sbjct: 342 DRFYEAXDDDFNTP-IAFALLFEXVREINRFRDN------NQIEKAAVLAAELKCLGNIF 394
Query: 134 GLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRK 193
           GLL     YS   +Q    A K A++ E  +  LI++R  A+  KD+  +DQIR  LT  
Sbjct: 395 GLL----QYSP--EQFLQGAKKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDL 446
Query: 194 GIALMDVRKETIWR 207
           G+A+ D    T WR
Sbjct: 447 GVAIEDSSDGTSWR 460

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 5e-28
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 1e-26
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 Back     alignment and structure
 Score =  109 bits (274), Expect = 5e-28
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 42  LQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFI 101
           L++  +AL  F    R   +     +      D FY  M DD NT       F + ++ I
Sbjct: 312 LENGRLALERFYLALRG--LPVVNHEKTSSYTDRFYEAMDDDFNTPIAFALLF-EMVREI 368

Query: 102 NNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAE 161
           N  +   + ++ +++ + LK       + ++ GLL    +  + LQ  K       E   
Sbjct: 369 NRFRDNNQIEKAAVLAAELK------CLGNIFGLLQY--SPEQFLQGAKK------EADV 414

Query: 162 NDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
            ++  LI++R  A+  KD+  +DQIR  LT  G+A+ D    T WR
Sbjct: 415 QEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWR 460
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 100.0
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.96
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.22
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 98.64
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 98.62
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 98.53
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 98.52
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 98.45
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 98.4
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 98.39
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 98.34
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 98.19
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 98.17
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 98.09
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 98.07
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 98.04
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 98.03
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 97.8
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 97.72
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 97.59
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 97.5
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 96.92
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 95.14
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 91.86
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=6.4e-35  Score=269.13  Aligned_cols=174  Identities=26%  Similarity=0.353  Sum_probs=88.6

Q ss_pred             CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974            8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN   85 (233)
Q Consensus         8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN   85 (233)
                      .|+|+++|||||++|||+|++||++.|.+|  .+++|.++...+...      .+      .....+...|.+||+||||
T Consensus       286 ~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~------~~------~~~~~~~~~~~~a~~dD~n  353 (462)
T 3tqo_A          286 ESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVV------NH------EKTSSYTDRFYEAMDDDFN  353 (462)
T ss_dssp             HSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC------------------CHHHHHHHHHHTBTCC
T ss_pred             hcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc------cc------hhHHHHHHHHHHHHHhccC
Confidence            589999999999999999999999999998  566776665444321      00      0123567889999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHH
Q 037974           86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVL  165 (233)
Q Consensus        86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  165 (233)
                      ||.||++ ||++++.+|+.+....      ...+..+...+..++.||||....  +..++..      ....+.++.|+
T Consensus       354 t~~a~~~-l~~~~~~~n~~~~~~~------~~~~~~~~~~~~~~~~vlg~~~~~--~~~~~~~------~~~~~~~~~i~  418 (462)
T 3tqo_A          354 TPIAFAL-LFEMVREINRFRDNNQ------IEKAAVLAAELKCLGNIFGLLQYS--PEQFLQG------AKKEADVQEIK  418 (462)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHGGGTCSCSC--HHHHC-------------------
T ss_pred             hHHHHHH-HHHHHHHHhhhhcccc------HHHHHHHHHHHHHHHHhcCCCccc--hhhhhhc------cccccCHHHHH
Confidence            9999999 9999999999765431      223344567788899999998652  3333210      00122346899


Q ss_pred             HHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEe
Q 037974          166 HLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRP  208 (233)
Q Consensus       166 ~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~  208 (233)
                      .||++|++||++|||++||+|||+|.++||.|+|||+||+|++
T Consensus       419 ~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g~~w~~  461 (462)
T 3tqo_A          419 KLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWRQ  461 (462)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence            9999999999999999999999999999999999999999986
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1li5a187 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy 8e-05
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87 Back     information, alignment and structure

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 64  AAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIE 123
            A    +     F   M DD NT         D  + +N  K +      ++   L K+ 
Sbjct: 15  VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKAEDMAAANAMASHLRKL- 72

Query: 124 NEVKVVLDVLGLLPE 138
                   VLGLL +
Sbjct: 73  ------SAVLGLLEQ 81

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1li5a187 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.52
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 90.73
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 87.48
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 83.31
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.7e-14  Score=102.35  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHH
Q 037974           70 KKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEV  145 (233)
Q Consensus        70 ~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~  145 (233)
                      ..+..+|.+||+||||||.|+++ ||++++.+|+++...       ......+...+..+.+||||+...  |..|
T Consensus        21 ~~~~~~F~~Am~DDlNTp~Ala~-lfel~k~~N~~~~~~-------~~~~~~~~~~l~~~~~vLGll~~~--p~~w   86 (87)
T d1li5a1          21 EAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAED-------MAAANAMASHLRKLSAVLGLLEQE--PEAF   86 (87)
T ss_dssp             HHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHTTTTCSCSC--HHHH
T ss_pred             HHHHHHHHHHHHhhcCcHHHHHH-HHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHhHcCCCCCC--HHHH
Confidence            35678899999999999999999 999999999976432       223445567788999999998773  5544
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure