Citrus Sinensis ID: 039609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAAKQVAKKKEKKAKAQAVAEA
ccccccccccHHHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccc
ccccccccccHHHHHHHHcHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHccHHHccccccccccEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHcccHHHccc
mgkslgntlepnelvhnfgsdaVRYFFLKEvefgndgdyseDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISnagnsymdehvpwsrfkqggaasEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQlgysneqfgnaawsdtkwgglkggqvmaqpkpvfgrielktgtedggepAAAKQVAKKKEKKAKAQAVAEA
mgkslgntlepnelvhnFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAvaaegtafkDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKtgtedggepaaAKQVAKKKEKKAKAQAVAEA
MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPaaakqvakkkekkakaqavaea
*************LVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR***********************************
MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL********************************
MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGT****************************
*****GNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAA*******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAAKQVAKKKEKKAKAQAVAEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query248 2.2.26 [Sep-21-2011]
Q55729532 Methionine--tRNA ligase O N/A no 0.814 0.379 0.409 1e-45
Q8Z068530 Methionine--tRNA ligase O yes no 0.854 0.4 0.443 3e-45
P59081529 Methionine--tRNA ligase O yes no 0.887 0.415 0.421 4e-45
Q9CD55537 Methionine--tRNA ligase O yes no 0.947 0.437 0.323 4e-28
Q8RE57636 Methionine--tRNA ligase O yes no 0.850 0.331 0.341 4e-28
Q8RDD1638 Methionine--tRNA ligase O yes no 0.858 0.333 0.317 1e-27
Q837B3 669 Methionine--tRNA ligase O yes no 0.850 0.315 0.304 7e-26
P59078515 Methionine--tRNA ligase O yes no 0.834 0.401 0.309 8e-26
Q8YH17515 Methionine--tRNA ligase O yes no 0.834 0.401 0.309 1e-25
Q92PX0516 Methionine--tRNA ligase O yes no 0.838 0.403 0.323 1e-25
>sp|Q55729|SYM_SYNY3 Methionine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=metG PE=3 SV=1 Back     alignment and function desciption
 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 35/237 (14%)

Query: 1   MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
           MGKSLGNT++P +L++ +G DA RY+FLKE+EFG DGD++E RF+ ++NA LAN +GNLL
Sbjct: 306 MGKSLGNTVDPLDLINRYGEDAFRYYFLKEIEFGKDGDFNEQRFVNVLNADLANDLGNLL 365

Query: 61  NRTLGLLKKNCQ--------STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSAC 112
           NRTLG++KK CQ        + L  D+ + A G+        L E     YE LS + AC
Sbjct: 366 NRTLGMVKKYCQGQGPQVMATDLAPDNPLKALGS-------HLGEEVSSAYERLSFTDAC 418

Query: 113 EAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVI-ILEAMRIIAVALSPVTPNLC 171
           EA+  +  AGN Y+D+  PW  FKQG   S+   +D++  +LE++R+ A  LSP+ P L 
Sbjct: 419 EAIFTLVRAGNKYIDDMAPWKLFKQG---SQKEVEDVLYSVLESIRLSAYLLSPIVPRLS 475

Query: 172 WRIYEQLGYS------------NEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL 216
            +IY+QLG++             E+F         WG L   Q +   +P+F ++EL
Sbjct: 476 TKIYQQLGFTWDFDQWRSPLEQAEEFNRHQ----SWGQLGANQNLPPAQPIFTKLEL 528
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q8Z068|SYM_NOSS1 Methionine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|P59081|SYM_THEEB Methionine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q9CD55|SYM_MYCLE Methionine--tRNA ligase OS=Mycobacterium leprae (strain TN) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q8RE57|SYM_FUSNN Methionine--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q8RDD1|SYM_THETN Methionine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q837B3|SYM_ENTFA Methionine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|P59078|SYM_BRUSU Methionine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q8YH17|SYM_BRUME Methionine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=metG PE=3 SV=2 Back     alignment and function description
>sp|Q92PX0|SYM_RHIME Methionine--tRNA ligase OS=Rhizobium meliloti (strain 1021) GN=metG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
224112799 610 predicted protein [Populus trichocarpa] 0.987 0.401 0.810 1e-109
356575379 605 PREDICTED: methionyl-tRNA synthetase-lik 0.991 0.406 0.745 1e-100
356536480 605 PREDICTED: methionyl-tRNA synthetase-lik 0.903 0.370 0.781 1e-100
359486632 611 PREDICTED: methionyl-tRNA synthetase-lik 0.903 0.366 0.812 7e-99
449449980 611 PREDICTED: methionine--tRNA ligase-like 0.866 0.351 0.809 1e-98
2266985 616 MEtRS [Arabidopsis thaliana] 0.870 0.350 0.800 1e-97
15233258 616 methionyl-tRNA synthetase [Arabidopsis t 0.870 0.350 0.800 1e-97
13605910 616 AT3g55400/T22E16_60 [Arabidopsis thalian 0.870 0.350 0.800 2e-97
297820298 615 hypothetical protein ARALYDRAFT_906959 [ 0.870 0.351 0.791 9e-96
343173016 586 methionyl-tRNA synthetase, partial [Sile 0.955 0.404 0.718 1e-94
>gi|224112799|ref|XP_002316296.1| predicted protein [Populus trichocarpa] gi|222865336|gb|EEF02467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/248 (81%), Positives = 216/248 (87%), Gaps = 3/248 (1%)

Query: 1   MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
           MGKSLGNTLEPNELVHNFGSDAVRYFFL+EVEFG+DGDYSE+RFI IVNAHLANTIGNLL
Sbjct: 366 MGKSLGNTLEPNELVHNFGSDAVRYFFLREVEFGSDGDYSEERFINIVNAHLANTIGNLL 425

Query: 61  NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
           NRTLGLLKKNCQSTL VDSAVAAEG A KDT+EKLVE AR HYENLSLSSACEAVL+I N
Sbjct: 426 NRTLGLLKKNCQSTLAVDSAVAAEGNALKDTIEKLVEKARIHYENLSLSSACEAVLEIGN 485

Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
           AGN+YMDE+ PW+RFKQGGAASEAAAKDLVIILEAMRI+A+ALSPV P+ CWRIYEQLGY
Sbjct: 486 AGNAYMDENAPWTRFKQGGAASEAAAKDLVIILEAMRIVAIALSPVAPSFCWRIYEQLGY 545

Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAAKQVAKKKEKKA 240
           S + F    WS TKWGGLKGGQVMAQPKPVF RIE KT  ED    AA K+  K K+KK 
Sbjct: 546 SKDHFNTVTWSGTKWGGLKGGQVMAQPKPVFARIENKTELED---EAATKKPVKSKQKKP 602

Query: 241 KAQAVAEA 248
           +AQ  AEA
Sbjct: 603 QAQVAAEA 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356575379|ref|XP_003555819.1| PREDICTED: methionyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356536480|ref|XP_003536765.1| PREDICTED: methionyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|359486632|ref|XP_002279143.2| PREDICTED: methionyl-tRNA synthetase-like [Vitis vinifera] gi|296086256|emb|CBI31697.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449980|ref|XP_004142742.1| PREDICTED: methionine--tRNA ligase-like [Cucumis sativus] gi|449483865|ref|XP_004156716.1| PREDICTED: methionine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|2266985|emb|CAA74281.1| MEtRS [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15233258|ref|NP_191100.1| methionyl-tRNA synthetase [Arabidopsis thaliana] gi|7076783|emb|CAB75898.1| methionyl-tRNA synthetase (AtcpMetRS) [Arabidopsis thaliana] gi|332645858|gb|AEE79379.1| methionyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13605910|gb|AAK32940.1|AF367354_1 AT3g55400/T22E16_60 [Arabidopsis thaliana] gi|22137164|gb|AAM91427.1| AT3g55400/T22E16_60 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820298|ref|XP_002878032.1| hypothetical protein ARALYDRAFT_906959 [Arabidopsis lyrata subsp. lyrata] gi|297323870|gb|EFH54291.1| hypothetical protein ARALYDRAFT_906959 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|343173016|gb|AEL99211.1| methionyl-tRNA synthetase, partial [Silene latifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
TAIR|locus:2099966616 OVA1 "OVULE ABORTION 1" [Arabi 0.895 0.360 0.783 2.8e-89
TIGR_CMR|GSU_2232510 GSU_2232 "methionyl-tRNA synth 0.854 0.415 0.354 3.9e-30
TIGR_CMR|CHY_2621 653 CHY_2621 "methionyl-tRNA synth 0.875 0.332 0.343 3.2e-26
TIGR_CMR|ECH_1000506 ECH_1000 "methionyl-tRNA synth 0.826 0.405 0.319 1.3e-25
UNIPROTKB|O05593519 metG "Methionine--tRNA ligase" 0.850 0.406 0.328 8.6e-25
TIGR_CMR|BA_0036 660 BA_0036 "methionyl-tRNA synthe 0.842 0.316 0.315 7.5e-23
TIGR_CMR|NSE_0893503 NSE_0893 "methionyl-tRNA synth 0.713 0.351 0.336 4.4e-22
TIGR_CMR|APH_1079513 APH_1079 "methionyl-tRNA synth 0.826 0.399 0.310 1.3e-21
TIGR_CMR|CJE_0925628 CJE_0925 "methionyl-tRNA synth 0.713 0.281 0.322 9.8e-21
UNIPROTKB|A6H7E1593 MARS2 "Methionine--tRNA ligase 0.741 0.310 0.297 2.5e-17
TAIR|locus:2099966 OVA1 "OVULE ABORTION 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 174/222 (78%), Positives = 187/222 (84%)

Query:     1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
             MGKSLGNTLEP ELV  FG DAVRYFFL+EVEFGNDGDYSEDRFIKIVNAHLANTIGNLL
Sbjct:   367 MGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 426

Query:    61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
             NRTLGLLKKNC+STLVVDS VAAEG   KDTVEKLVE AR +YENLSLSSACEAVL+I N
Sbjct:   427 NRTLGLLKKNCESTLVVDSTVAAEGVPLKDTVEKLVEKARTNYENLSLSSACEAVLEIGN 486

Query:   121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
             AGN+YMD+  PW  FKQGG ++E AAKDLVIILE MR+IAVALSPV P L  RIY QLGY
Sbjct:   487 AGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPVAPCLSLRIYSQLGY 546

Query:   181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTED 222
             + +QF +  WSDTKWGGLKGGQVM Q  PVF RIEL    E+
Sbjct:   547 TEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNPEKEE 588
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004825 "methionine-tRNA ligase activity" evidence=IEA;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006431 "methionyl-tRNA aminoacylation" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048481 "ovule development" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|GSU_2232 GSU_2232 "methionyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2621 CHY_2621 "methionyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_1000 ECH_1000 "methionyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|O05593 metG "Methionine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0036 BA_0036 "methionyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0893 NSE_0893 "methionyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1079 APH_1079 "methionyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0925 CJE_0925 "methionyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|A6H7E1 MARS2 "Methionine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.2264.1
hypothetical protein (594 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00002342
methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa)
     •• 0.977
MS3
SubName- Full=Putative uncharacterized protein; (766 aa)
     •• 0.911
MS1
SubName- Full=Putative uncharacterized protein; (766 aa)
     •• 0.911
MS2
SubName- Full=Putative uncharacterized protein; (766 aa)
     •• 0.911
grail3.17125000101
annotation not avaliable (190 aa)
     •  0.899
fgenesh4_pg.C_LG_III001784
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •  0.899
eugene3.14420001
methionine gamma-lyase (EC-4.4.1.11) (420 aa)
     •  0.899
MMT
methionine s-methyltransferase (EC-2.1.1.12) (1095 aa)
     •  0.899
eugene3.00031777
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •  0.899
estExt_Genewise1_v1.C_LG_I8346
SubName- Full=Putative uncharacterized protein; (455 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
PLN02224616 PLN02224, PLN02224, methionine-tRNA ligase 1e-124
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 6e-73
PRK12267 648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 1e-56
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 5e-53
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 9e-46
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 1e-40
cd07957129 cd07957, Anticodon_Ia_Met, Anticodon-binding domai 2e-35
PRK00133 673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 2e-28
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 4e-23
PLN02610 801 PLN02610, PLN02610, probable methionyl-tRNA synthe 5e-12
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 5e-10
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 5e-09
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 1e-08
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 2e-08
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 4e-08
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 4e-08
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 7e-07
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 8e-07
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 2e-06
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 4e-06
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 5e-06
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-05
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 4e-05
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 5e-05
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 1e-04
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 6e-04
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 0.001
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 0.004
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information 
 Score =  365 bits (938), Expect = e-124
 Identities = 182/250 (72%), Positives = 198/250 (79%), Gaps = 2/250 (0%)

Query: 1   MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
           MGKSLGNTLEP ELV  FG DAVRYFFL+EVEFGNDGDYSEDRFIKIVNAHLANTIGNLL
Sbjct: 367 MGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 426

Query: 61  NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
           NRTLGLLKKNC+STLV DS VAAEG   KDTVEKLVE A+ +YENLSLSSACEAVL+I N
Sbjct: 427 NRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGN 486

Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
           AGN+YMD+  PW  FKQGG ++E AAKDLVIILE MR+IAVALSP+ P L  RIY QLGY
Sbjct: 487 AGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546

Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELK-TGTEDGGEPAAAKQVAKKKEKK 239
           S +QF +  WSDTKWGGLKGGQVM Q  PVF RIEL     ED  +P   K+  K K K 
Sbjct: 547 SEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNPEKEEDEKKPKVGKKTGKAKVKV 606

Query: 240 A-KAQAVAEA 248
             +   VAEA
Sbjct: 607 VEQTPTVAEA 616

Length = 616
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
PLN02224616 methionine-tRNA ligase 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
PRK12267 648 methionyl-tRNA synthetase; Reviewed 100.0
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 99.97
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 99.97
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 99.97
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 99.97
PLN02882 1159 aminoacyl-tRNA ligase 99.97
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 99.97
PLN02943 958 aminoacyl-tRNA ligase 99.97
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 99.97
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 99.96
PRK13208800 valS valyl-tRNA synthetase; Reviewed 99.96
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 99.96
PLN02843 974 isoleucyl-tRNA synthetase 99.96
PLN02381 1066 valyl-tRNA synthetase 99.96
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 99.96
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 99.96
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 99.96
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 99.95
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 99.95
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 99.94
PRK00390805 leuS leucyl-tRNA synthetase; Validated 99.93
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.93
PLN02563963 aminoacyl-tRNA ligase 99.92
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.92
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.91
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 99.9
PLN02959 1084 aminoacyl-tRNA ligase 99.9
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.84
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 99.83
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 99.8
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 99.79
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.77
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.77
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.75
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.71
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.69
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.65
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.65
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.64
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.58
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 99.58
PLN02946557 cysteine-tRNA ligase 99.58
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.55
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.5
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.5
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.48
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.46
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.46
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.43
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.42
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.39
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.01
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 98.78
cd00674353 LysRS_core_class_I catalytic core domain of class 98.71
PLN02286576 arginine-tRNA ligase 98.67
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 98.6
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 98.55
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 98.11
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.84
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.61
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 94.97
PF0919063 DALR_2: DALR domain; InterPro: IPR015273 The amino 93.89
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 92.06
smart0084056 DALR_2 This DALR domain is found in cysteinyl-tRNA 91.47
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 89.7
cd07963156 Anticodon_Ia_Cys Anticodon-binding domain of cyste 85.13
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 84.61
PRK01233682 glyS glycyl-tRNA synthetase subunit beta; Validate 82.32
COG0751691 GlyS Glycyl-tRNA synthetase, beta subunit [Transla 81.53
>PLN02224 methionine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-45  Score=344.39  Aligned_cols=220  Identities=78%  Similarity=1.201  Sum_probs=192.4

Q ss_pred             CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609            1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA   80 (248)
Q Consensus         1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~   80 (248)
                      ||||+||+|+|.+++++||+|++||||++.+++.+|++|+++.|.+++|++|++++||+++|++.++.+++++.+|....
T Consensus       367 MSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~  446 (616)
T PLN02224        367 MGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDST  446 (616)
T ss_pred             ccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888877664322


Q ss_pred             CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609           81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA  160 (248)
Q Consensus        81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~  160 (248)
                      ....|.++.+.+++++..+.++|++|++++|+..+|+|++.+|+|++..+||+++++++...+++..++++++++++.++
T Consensus       447 ~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a  526 (616)
T PLN02224        447 VAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIA  526 (616)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence            23457899999999999999999999999999999999999999999999999998754334456667889999999999


Q ss_pred             HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccc
Q 039609          161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGT  220 (248)
Q Consensus       161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~  220 (248)
                      +||+||||++|++||++||.+.+......|.+..|+.+..|+.++.+.|||+||+.+.++
T Consensus       527 ~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~Lf~ri~~~~~~  586 (616)
T PLN02224        527 VALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNPEK  586 (616)
T ss_pred             HHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCCCCCCCCCCcCcchHH
Confidence            999999999999999999986533222356554455567789999999999999976544

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 1e-27
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 2e-27
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 4e-22
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 8e-22
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 8e-22
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 8e-22
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 1e-20
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 1e-20
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 1e-20
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 3e-20
1qqt_A551 Methionyl-Trna Synthetase From Escherichia Coli Len 5e-14
1p7p_A551 Methionyl-trna Synthetase From Escherichia Coli Com 3e-13
3h97_A560 Structure Of A Mutant Methionyl-trna Synthetase Wit 3e-13
1f4l_A551 Crystal Structure Of The E.Coli Methionyl-Trna Synt 3e-13
3h9c_A547 Structure Of Methionyl-Trna Synthetase: Crystal For 3e-13
1rqg_A 722 Methionyl-Trna Synthetase From Pyrococcus Abyssi Le 2e-08
1gax_A862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 1e-04
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 3e-04
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 109/216 (50%), Gaps = 5/216 (2%)
Query: 1   MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
           M KS+GN ++P  LV  FG D VRYF L+EV FG DG Y+ED  I  VNA LAN +GNL 
Sbjct: 311 MSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLA 370
Query: 61  NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
            R+L ++ KN  + +        E TA     + L+E  R H++  ++  A EA+  +  
Sbjct: 371 QRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG 430
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKD-LVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
           A N Y     PW   K   A  +   +  L   LE +RI ++ L PV P    ++ + LG
Sbjct: 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLG 490
Query: 180 YSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE 215
              ++   +A ++     +K G  +  P  +F R +
Sbjct: 491 QPTDERDFSAIANR----IKPGTSLPAPSGIFPRYQ 522
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 Back     alignment and structure
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 Back     alignment and structure
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 Back     alignment and structure
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 Back     alignment and structure
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 Back     alignment and structure
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 1e-78
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 8e-78
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 8e-76
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 2e-72
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 1e-71
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 9e-66
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 1e-42
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 2e-33
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 2e-16
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 4e-16
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 3e-08
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 1e-07
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 3e-07
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
 Score =  245 bits (627), Expect = 1e-78
 Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 6/217 (2%)

Query: 1   MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
           M KS+GN ++P ELV  +G D +RYF ++EV FG DG YS +  +   NA LAN +GNL 
Sbjct: 322 MSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLA 381

Query: 61  NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
            R+L ++ KNC+  +    A +    A  D  +  +ETAR   ++ +L  A  A+  +  
Sbjct: 382 QRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVA 441

Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
             N Y     PW+  K            L +  E +R + + + P  P    ++ + L  
Sbjct: 442 EANRYFAGQEPWALRKTD---PARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498

Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELK 217
             ++     ++D     L GG  +  P+PVF R    
Sbjct: 499 PADKRQ---FADVLASPLAGGTDLPAPQPVFPRYVEA 532
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 99.97
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 99.96
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 99.96
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.95
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 99.95
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.95
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.95
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.69
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.68
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.68
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.67
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.63
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.58
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.55
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.14
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 98.64
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 96.23
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 93.39
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 89.29
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 88.75
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 83.54
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-45  Score=338.68  Aligned_cols=215  Identities=29%  Similarity=0.478  Sum_probs=188.3

Q ss_pred             CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609            1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA   80 (248)
Q Consensus         1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~   80 (248)
                      ||||+||||+|.|++++||+|++||||++.+++++|++||++.+.+++|++|+|++||+++|+..+... .++.+|....
T Consensus       324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~-~~~~~~~~~~  402 (542)
T 3u1f_A          324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN-VNGEWPSPAA  402 (542)
T ss_dssp             CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTS-TTSBCCCCCC
T ss_pred             eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhc-ccCCCCccch
Confidence            999999999999999999999999999998999999999999999999999999999999999876543 4455565555


Q ss_pred             CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609           81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA  160 (248)
Q Consensus        81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~  160 (248)
                      ....|+++++.++++.+.+.++|++|+|+.|++.|++|++.+|+|++..+||++++++   .+++.+++++++++++.++
T Consensus       403 ~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d---~~~~~~~l~~~~~~l~~~~  479 (542)
T 3u1f_A          403 YTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTT  479 (542)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC---HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCC---HHHHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999999998764   3467778999999999999


Q ss_pred             HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccC---CCCCccccCCcccccc
Q 039609          161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMA---QPKPVFGRIELKTGTE  221 (248)
Q Consensus       161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~---~~~~lf~ki~~~~~~~  221 (248)
                      +||+||||++||+||++||++....  ..+....|+.+++|+.++   ++++||+||+.++++.
T Consensus       480 ~ll~P~~P~~aeei~~~Lg~~~~~~--~~~~~~~~~~l~~g~~i~~~~~~~~LF~kie~e~~e~  541 (542)
T 3u1f_A          480 LLLSPILPRKSVVIFDMLGVPEVHR--KGIENFEFGAVPPGTRLGPAVEGEVLFSKRSTENTKS  541 (542)
T ss_dssp             HHHTTTSHHHHHHHHHHHTCCGGGG--SSGGGGSTTCSCTTCBCCCCCTTCCSSCCCCCCC---
T ss_pred             HHHHhHhHHHHHHHHHHCCCCCccc--cchhhccccCCCCCCCcCCcCCCCCCcCCCChhhhhc
Confidence            9999999999999999999976432  234455677788899886   4689999999987653
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 2e-24
d1pfva1162 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me 1e-21
d1rqga1210 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me 2e-18
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 6e-17
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 8e-16
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-15
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 1e-12
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 4e-12
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 2e-10
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 2e-08
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 1e-07
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-05
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 93.0 bits (230), Expect = 2e-24
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 52  LANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSA 111
           LA+ +GNL+ RT  +L +  +    +   VA E          L    R     L    A
Sbjct: 1   LADDLGNLVQRTRAMLFRFAEG--RIPEPVAGE---ELAEGTGLAGRLRPLVRELKFHVA 55

Query: 112 CEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLC 171
            E  +    A N Y++E  PW  FK+     E A   L  ++E +RI ++ L+P  P+  
Sbjct: 56  LEEAMAYVKALNRYINEKKPWELFKKE---PEEARAVLYRVVEGLRIASILLTPAMPDKM 112

Query: 172 WRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR 213
             +   LG   E          +WG  +   +  +   +F +
Sbjct: 113 AELRRALGLKEEVR---LEEAERWGLAEPRPIPEEAPVLFPK 151
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.97
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.97
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.67
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.67
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.65
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.56
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 94.32
d1li5a187 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 94.3
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 84.78
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=9.7e-34  Score=232.12  Aligned_cols=160  Identities=18%  Similarity=0.368  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCc
Q 039609           53 ANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPW  132 (248)
Q Consensus        53 ~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW  132 (248)
                      +|++|||++|+++|+.++++|.+|........|.+++..++.+..++.++|++|+|++|++.+|++++.+|+|++..+||
T Consensus         1 vN~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~PW   80 (210)
T d1rqga1           1 VNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPW   80 (210)
T ss_dssp             TTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            37799999999999999999999977667788999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccc
Q 039609          133 SRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFG  212 (248)
Q Consensus       133 ~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~  212 (248)
                      ++++++   .+++.+++++++++++.++++|+||||++|++||++||++..    ..|   .|+.+++|+.+++|+|||+
T Consensus        81 ~l~k~~---~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~----~~~---~~~~~~~g~~i~~~~~LF~  150 (210)
T d1rqga1          81 KTAKED---KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV----KRW---EFRELPAGHKVRKPEILFK  150 (210)
T ss_dssp             HHTTTC---HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC----CCS---SCCCCCTTCBCCCCCCSCC
T ss_pred             hhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcc----cch---hhhcCcccccCCCCccCcC
Confidence            998864   356778999999999999999999999999999999998652    123   3456788999999999999


Q ss_pred             cCCccccccc
Q 039609          213 RIELKTGTED  222 (248)
Q Consensus       213 ki~~~~~~~~  222 (248)
                      ||+.+++...
T Consensus       151 rie~e~i~~~  160 (210)
T d1rqga1         151 KVTDDQIIYF  160 (210)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999876543
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure