Citrus Sinensis ID: 039847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIVDDNN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccccEEEEEEccccEEEEEEEEccccccccccEEEEcEEEEEEEEccccccEEEEEEEcccccccccccEEEEEEccEEEEEEccccccccccEEEEEEEcccccEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHcccHcccHHHHHHHHHHHcccccHccccccEEEEEcccccccccEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEEccccccEEEEEEEEEccccEEEEccHEEEEEcccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mssddtdmdwelVPAANAFVTAVKPALEFLningewddagdnlmfkatlptgtkmeelkiestedgkllklskvlpegdngdgeHEAAVMWVLKECcssgdgkidisksfnlpegvivkpncfkasveDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIVDDNN
Flexible Loop (DISEMBL)
MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKiestedgkllklskvlpegdngDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKvlgvvakavpVVVLIAVNIVDDNN
Low Complexity Region (SEG)
MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTklkskkkimskvlgvvakavpvvvliavnivddnN
Disordered region (IsUnstruct)
********DWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLP***********************************EAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIV****
Disordered Region (DISOPRED)
******D*DWELVPAANA**T**K*ALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLL*********************WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIF******************KAVPVVVLIAVNIVD***
Disordered Region (DISEMBL)
********DWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIVDDNN
Disordered Region (DISPRO)
******DMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIVDD**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLIAVNIVDDNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9XIE3	155	17.6 kDa class I heat sho	yes	no	0.581	0.645	0.368	2e-06
Q84J50	159	17.7 kDa class I heat sho	yes	no	0.651	0.704	0.340	7e-06
P13853	157	17.6 kDa class I heat sho	no	no	0.610	0.668	0.352	9e-06
Q9LNW0	157	17.8 kDa class I heat sho	no	no	0.581	0.636	0.359	2e-05
Q84Q77	161	17.9 kDa class I heat sho	no	no	0.587	0.627	0.339	3e-05
P04794	154	17.5 kDa class I heat sho	no	no	0.587	0.655	0.330	0.0006
P02519	153	17.3 kDa class I heat sho	no	no	0.587	0.660	0.330	0.0006

>sp|Q9XIE3|HS17A_ARATH 17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 31  NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
           N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct: 45  NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 97

Query: 91  WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
           W   E  S G      S+ F LPE V  K +  KAS+E+GVL V   K+++ KK
Sbjct: 98  WHRVERSSGG-----FSRKFRLPENV--KMDQVKASMENGVLTVTVPKVETNKK 144

Possesses chaperone activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 12  LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
           L P AN+   A      F     +W +  +  +FKA +P G K EE+K+E  +DG +L++
Sbjct: 38  LFPRANSDAAA------FAGARIDWKETPEVHVFKADVP-GLKKEEVKVE-VDDGNILQI 89

Query: 72  SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
           S     G+    + E +  W   E  S   GK    + F LPE    KP   KAS+E+GV
Sbjct: 90  S-----GERSREQEEKSDKWHRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGV 137

Query: 132 LNVIFTKLKSKK 143
           L V   K + KK
Sbjct: 138 LTVTVPKEEPKK 149

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P13853|HS17C_ARATH 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 17/122 (13%)

Query: 25  PALE---FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNG 81
           PA++   F N   +W +  +  +FKA LP G + EE+K+E  EDG +L++S     G+  
Sbjct: 40  PAMDVAAFTNAKVDWRETPEAHVFKADLP-GLRKEEVKVE-VEDGNILQIS-----GERS 92

Query: 82  DGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141
           +   E    W   E  S   GK   ++ F LPE    K    KAS+E+GVL+V   K+  
Sbjct: 93  NENEEKNDKWHRVERSS---GKF--TRRFRLPENA--KMEEIKASMENGVLSVTVPKVPE 145

Query: 142 KK 143
           KK
Sbjct: 146 KK 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 31  NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
           N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct: 47  NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 99

Query: 91  WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
           W   E  S        S+ F LPE V  K +  KAS+E+GVL V   K++  KK
Sbjct: 100 WHRVERSSG-----QFSRKFKLPENV--KMDQVKASMENGVLTVTVPKVEEAKK 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q84Q77|HS17A_ORYSJ 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 14/115 (12%)

Query: 29  FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAA 88
           F     +W +  +  +FKA +P G K EE+K+E  +DG +L++S     G+    + E  
Sbjct: 51  FAGARIDWKETPEAHVFKADVP-GLKKEEVKVE-VDDGNILQIS-----GERNKEQEEKT 103

Query: 89  VMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKK 143
             W   E  S   GK    + F LP+    KP   KAS+E+GVL V   K ++KK
Sbjct: 104 DQWHRVERSS---GKF--LRRFRLPDNA--KPEQIKASMENGVLTVTVPKEEAKK 151

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P04794|HSP14_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 14/115 (12%)

Query: 29  FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAA 88
           F++   +W +  +  +FKA +P G K EE+K++  ED ++L++S     G+    + +  
Sbjct: 44  FVSTRVDWKETPEAHVFKADIP-GLKKEEVKVQ-IEDDRVLQIS-----GERNVEKEDKN 96

Query: 89  VMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKK 143
             W   E  S   GK   ++ F LPE   V  N  KAS+E+GVL V   K + KK
Sbjct: 97  DTWHRVERSS---GKF--TRRFRLPENAKV--NEVKASMENGVLTVTVPKEEVKK 144

Glycine max (taxid: 3847)

>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 29  FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAA 88
           F++   +W +  +  +FKA +P G K EE+K+E  +DG++L++S     G+    + +  
Sbjct: 43  FVSTRVDWKETPEAHVFKADIP-GLKKEEVKLE-IQDGRVLQIS-----GERNVEKEDKN 95

Query: 89  VMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKK 143
             W   E  S   GK+   + F LPE   V  +  KAS+E+GVL V   K + KK
Sbjct: 96  DTWHRVERSS---GKL--VRRFRLPENAKV--DQVKASMENGVLTVTVPKEEIKK 143

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
297840571	156	hypothetical protein ARALYDRAFT_893564 [	0.627	0.692	0.360	1e-05
21592809	155	heat shock protein, putative [Arabidopsi	0.581	0.645	0.368	6e-05
15218934	155	HSP20-like chaperone [Arabidopsis thalia	0.581	0.645	0.368	7e-05
38639431	154	17.5 kDa class I heat shock protein [Car	0.587	0.655	0.356	0.0003
449439950	200	PREDICTED: 18.5 kDa class I heat shock p	0.726	0.625	0.307	0.0003
115452123	159	Os03g0267200 [Oryza sativa Japonica Grou	0.651	0.704	0.340	0.0003
312983216	160	18.0 kDa heat shock protein [Oryza sativ	0.709	0.762	0.337	0.0003
125543242	159	hypothetical protein OsI_10886 [Oryza sa	0.651	0.704	0.340	0.0004
15220832	157	HSP20-like chaperone [Arabidopsis thalia	0.610	0.668	0.352	0.0004
159138945	159	low molecular weight heat shock protein	0.674	0.729	0.323	0.0007

>gi|297840571|ref|XP_002888167.1| hypothetical protein ARALYDRAFT_893564 [Arabidopsis lyrata subsp. lyrata] gi|297334008|gb|EFH64426.1| hypothetical protein ARALYDRAFT_893564 [Arabidopsis lyrata subsp. lyrata]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 14/122 (11%)

Query: 31  NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
           N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct: 47  NARVDWKETEEAHVFKADLP-GMKKEEVKVE-IEDDTVLKIS-----GERHVEKEEKQDT 99

Query: 91  WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVL 150
           W   E  S G      S+ F LPE V  K +  KAS+E+GVL V   K+++KKK   K +
Sbjct: 100 WHRVERSSGG-----FSRKFRLPENV--KMDQVKASMENGVLTVTVPKVETKKKAQVKSI 152

Query: 151 GV 152
            +
Sbjct: 153 EI 154

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592809|gb|AAM64758.1| heat shock protein, putative [Arabidopsis thaliana]

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 31  NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
           N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct: 45  NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 97

Query: 91  WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
           W   E  S G      S+ F LPE V  K +  KAS+E+GVL V   K+++ KK
Sbjct: 98  WHRVERSSGG-----FSRKFRLPENV--KMDQVKASMENGVLTVTVPKVETNKK 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218934|ref|NP_176195.1| HSP20-like chaperone [Arabidopsis thaliana] gi|75315310|sp|Q9XIE3.1|HS17A_ARATH RecName: Full=17.6 kDa class I heat shock protein 1; AltName: Full=17.6 kDa heat shock protein 1; Short=AtHsp17.6A gi|5080819|gb|AAD39328.1|AC007258_17 Putative Heat shock hsp20 protein [Arabidopsis thaliana] gi|51968438|dbj|BAD42911.1| unknown protein [Arabidopsis thaliana] gi|51968672|dbj|BAD43028.1| unknown protein [Arabidopsis thaliana] gi|88900414|gb|ABD57519.1| At1g59860 [Arabidopsis thaliana] gi|332195508|gb|AEE33629.1| HSP20-like chaperone [Arabidopsis thaliana]

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)

Query: 31  NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
           N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct: 45  NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 97

Query: 91  WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
           W   E  S G      S+ F LPE V  K +  KAS+E+GVL V   K+++ KK
Sbjct: 98  WHRVERSSGG-----FSRKFRLPENV--KMDQVKASMENGVLTVTVPKVETNKK 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38639431|gb|AAR25848.1| 17.5 kDa class I heat shock protein [Carica papaya]

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 29  FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAA 88
           F+N + +W++  +  +F+A LP G K EE+K+E  ED ++L++S     G+    + +  
Sbjct: 44  FVNTSVDWEETPEAHVFRADLP-GLKKEEVKVE-LEDDRVLQIS-----GERHVEKEDKN 96

Query: 89  VMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKK 143
             W   E  S   GK   S+ F LPE V  K +  KAS+E+GVL V   K ++KK
Sbjct: 97  DTWHRVERSS---GKF--SRRFRLPENV--KMDQVKASMENGVLTVTVPKAEAKK 144

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439950|ref|XP_004137748.1| PREDICTED: 18.5 kDa class I heat shock protein-like [Cucumis sativus] gi|449511076|ref|XP_004163855.1| PREDICTED: 18.5 kDa class I heat shock protein-like [Cucumis sativus]

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 15/140 (10%)

Query: 13  VPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLS 72
           V +A++F ++V P    +N   +W + GD  +FK  LP G K  E+K+E  E+G L   +
Sbjct: 73  VVSADSFRSSVAPNSSAINAQIDWKETGDAYVFKLDLP-GVKKHEVKLEIEENGALCIST 131

Query: 73  KVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVL 132
           ++  E +      E   +W   E  SSG     I +   LP+G  V  +  +A + +GVL
Sbjct: 132 EIRAERE------ERTDIWHRME-RSSG----RIYRRIVLPDGADV--DKVRAEMYNGVL 178

Query: 133 NVIFTKLKSKKKIMSKVLGV 152
           NV   K + +K  M++V+ +
Sbjct: 179 NVTVPKYQFRKP-MARVVQI 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452123|ref|NP_001049662.1| Os03g0267200 [Oryza sativa Japonica Group] gi|75297657|sp|Q84J50.1|HS177_ORYSJ RecName: Full=17.7 kDa class I heat shock protein; AltName: Full=17.7 kDa heat shock protein; Short=OsHsp17.7 gi|1815664|gb|AAC78394.1| low molecular mass heat shock protein Oshsp17.7 [Oryza sativa Japonica Group] gi|29893630|gb|AAP06884.1| shock protein, low molecular weight [Oryza sativa Japonica Group] gi|29893637|gb|AAP06891.1| putative heat shock protein [Oryza sativa Japonica Group] gi|108707362|gb|ABF95157.1| 17.4 kDa class I heat shock protein, putative, expressed [Oryza sativa Japonica Group] gi|113548133|dbj|BAF11576.1| Os03g0267200 [Oryza sativa Japonica Group] gi|125585716|gb|EAZ26380.1| hypothetical protein OsJ_10263 [Oryza sativa Japonica Group] gi|215697489|dbj|BAG91483.1| unnamed protein product [Oryza sativa Japonica Group] gi|313575789|gb|ADR66974.1| 17.4 kDa heat shock protein [Oryza sativa Japonica Group]

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 12  LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
           L P AN+   A      F     +W +  +  +FKA +P G K EE+K+E  +DG +L++
Sbjct: 38  LFPRANSDAAA------FAGARIDWKETPEVHVFKADVP-GLKKEEVKVE-VDDGNILQI 89

Query: 72  SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
           S     G+    + E +  W   E  S   GK    + F LPE    KP   KAS+E+GV
Sbjct: 90  S-----GERSREQEEKSDKWHRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGV 137

Query: 132 LNVIFTKLKSKK 143
           L V   K + KK
Sbjct: 138 LTVTVPKEEPKK 149

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312983216|gb|ADR30405.1| 18.0 kDa heat shock protein [Oryza sativa Indica Group]

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 26/148 (17%)

Query: 12  LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
           L P AN+   A      F     +W +  +  +FKA +P G K EE K+E  EDG +L++
Sbjct: 33  LFPRANSDAAA------FAVARIDWKETPEAHVFKADVP-GLKKEEAKVE-VEDGNVLQI 84

Query: 72  SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
           S     G+    + E    W   E  S   GK    + F LPE    KP   KAS+E+GV
Sbjct: 85  S-----GERIKEQEEKTDKWRRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGV 132

Query: 132 LNVIFTKLKSKK------KIMSKVLGVV 153
           L V   K  SKK      +I  K +G++
Sbjct: 133 LTVTVPKEDSKKPDVKSIQITGKSIGLI 160

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125543242|gb|EAY89381.1| hypothetical protein OsI_10886 [Oryza sativa Indica Group]

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 12  LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
           L P AN+   A      F     +W +  +  +FKA +P G K EE+K+E  +DG +L++
Sbjct: 38  LFPRANSDAAA------FAGARIDWKETPEVHVFKADVP-GLKKEEVKVE-VDDGNILQI 89

Query: 72  SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
           S     G+    + E +  W   E  S   GK    + F LPE    KP   KAS+E+GV
Sbjct: 90  S-----GERSREQEEKSDKWHRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGV 137

Query: 132 LNVIFTKLKSKK 143
           L V   K + KK
Sbjct: 138 LTVTVPKEEPKK 149

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220832|ref|NP_175759.1| HSP20-like chaperone [Arabidopsis thaliana] gi|21264442|sp|P13853.2|HS17C_ARATH RecName: Full=17.6 kDa class I heat shock protein 3; AltName: Full=17.6 kDa heat shock protein 3; Short=AtHsp17.6C gi|12324023|gb|AAG51972.1|AC024260_10 17.6 kDa heat shock protein (AA 1-156); 91675-91202 [Arabidopsis thaliana] gi|4376161|emb|CAA34208.1| unnamed protein product [Arabidopsis thaliana] gi|88900420|gb|ABD57522.1| At1g53540 [Arabidopsis thaliana] gi|332194833|gb|AEE32954.1| HSP20-like chaperone [Arabidopsis thaliana]

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 17/122 (13%)

Query: 25  PALE---FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNG 81
           PA++   F N   +W +  +  +FKA LP G + EE+K+E  EDG +L++S     G+  
Sbjct: 40  PAMDVAAFTNAKVDWRETPEAHVFKADLP-GLRKEEVKVE-VEDGNILQIS-----GERS 92

Query: 82  DGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141
           +   E    W   E  S   GK   ++ F LPE    K    KAS+E+GVL+V   K+  
Sbjct: 93  NENEEKNDKWHRVERSS---GKF--TRRFRLPENA--KMEEIKASMENGVLSVTVPKVPE 145

Query: 142 KK 143
           KK
Sbjct: 146 KK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159138945|gb|ABW89472.1| low molecular weight heat shock protein [Gossypium hirsutum]

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 14  PAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSK 73
           P   +F +  +    F+N   +W +  +  +FKA LP G K EE+K+E  E  ++L++S 
Sbjct: 34  PTVTSFPSLSRENSAFVNTRVDWKETPEAHVFKADLP-GVKKEEVKVE-IEGDRVLQIS- 90

Query: 74  VLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLN 133
               G+    + E    W   E  S   GK   S+ F LPE V +     KAS+E+GVL 
Sbjct: 91  ----GERHVEKEERNDTWHRVERSS---GK--FSRRFRLPENVRM--GDVKASMENGVLT 139

Query: 134 VIFTKLKSKK 143
           +   K++ KK
Sbjct: 140 ITVPKVEMKK 149

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2024862	157	AT1G53540 [Arabidopsis thalian	0.627	0.687	0.349	6.8e-08
UNIPROTKB|Q84J50	159	HSP17.7 "17.7 kDa class I heat	0.616	0.666	0.333	8.7e-08
UNIPROTKB|P31673	154	HSP17.4 "17.4 kDa class I heat	0.616	0.688	0.341	1.1e-07
TAIR|locus:2075256	156	HSP17.4 "heat shock protein 17	0.563	0.621	0.351	1.1e-07
TAIR|locus:2025921	155	AT1G59860 [Arabidopsis thalian	0.523	0.580	0.375	1.4e-07
UNIPROTKB|Q84Q72	161	HSP18.1 "18.1 kDa class I heat	0.5	0.534	0.37	1.8e-07
TAIR|locus:2024997	157	AT1G07400 [Arabidopsis thalian	0.523	0.573	0.384	2.3e-07
UNIPROTKB|Q84Q77	161	HSP17.9A "17.9 kDa class I hea	0.5	0.534	0.35	4.8e-07
UNIPROTKB|Q943E7	149	HSP16.9C "16.9 kDa class I hea	0.604	0.697	0.349	6.1e-07
TAIR|locus:2174269	161	HSP18.2 "heat shock protein 18	0.604	0.645	0.333	1.3e-06

TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 43/123 (34%), Positives = 62/123 (50%)

Query:    12 LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
             L P+  A   A+  A  F N   +W +  +  +FKA LP G + EE+K+E  EDG +L++
Sbjct:    31 LTPSGLANAPAMDVAA-FTNAKVDWRETPEAHVFKADLP-GLRKEEVKVE-VEDGNILQI 87

Query:    72 SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
             S     G+  +   E    W   E  S   GK   ++ F LPE    K    KAS+E+GV
Sbjct:    88 S-----GERSNENEEKNDKWHRVERSS---GKF--TRRFRLPENA--KMEEIKASMENGV 135

Query:   132 LNV 134
             L+V
Sbjct:   136 LSV 138

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=ISS;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q84J50 HSP17.7 "17.7 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 40/120 (33%), Positives = 59/120 (49%)

Query:    15 AANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKV 74
             + + F  A   A  F     +W +  +  +FKA +P G K EE+K+E  +DG +L++S  
Sbjct:    35 SGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVP-GLKKEEVKVE-VDDGNILQIS-- 90

Query:    75 LPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
                G+    + E +  W   E  S   GK    + F LPE    KP   KAS+E+GVL V
Sbjct:    91 ---GERSREQEEKSDKWHRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGVLTV 140

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 41/120 (34%), Positives = 58/120 (48%)

Query:    15 AANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKV 74
             + + F  A   A  F     +W +  +  +FKA +P G K EE+K+E  EDG +L++S  
Sbjct:    30 SGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVP-GLKKEEVKVE-VEDGNVLQIS-- 85

Query:    75 LPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
                G+    + E    W   E  S   GK    + F LPE    KP   KAS+E+GVL V
Sbjct:    86 ---GERIKEQEEKTDKWHRVERSS---GKF--LRRFRLPENT--KPEQIKASMENGVLTV 135

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 39/111 (35%), Positives = 56/111 (50%)

Query:    24 KPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDG 83
             K    F N   +W +  +  +FKA +P G K EE+K+E  EDG +L++S     G+    
Sbjct:    41 KDVAAFTNAKVDWRETPEAHVFKADVP-GLKKEEVKVE-VEDGNILQIS-----GERSSE 93

Query:    84 EHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
               E +  W   E  S   GK    + F LPE   V+    KAS+E+GVL+V
Sbjct:    94 NEEKSDTWHRVERSS---GKF--MRRFRLPENAKVEE--VKASMENGVLSV 137

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2025921 AT1G59860 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 39/104 (37%), Positives = 53/104 (50%)

Query:    31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
             N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct:    45 NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 97

Query:    91 WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
             W   E  S G      S+ F LPE V  K +  KAS+E+GVL V
Sbjct:    98 WHRVERSSGG-----FSRKFRLPENV--KMDQVKASMENGVLTV 134

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;ISS

GO:0006457 "protein folding" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 37/100 (37%), Positives = 52/100 (52%)

Query:    35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
             +W +  +  +FKA +P G K EE+K+E  EDG +L++S     G+    + E    W   
Sbjct:    57 DWKETPEAHVFKADVP-GLKKEEVKVE-VEDGNVLQIS-----GERSKEQEEKTDKWHRV 109

Query:    95 ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
             E  S   GK    + F LPE    KP   KAS+E+GVL V
Sbjct:   110 ERSS---GKF--LRRFRLPENT--KPEQIKASMENGVLTV 142

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 40/104 (38%), Positives = 54/104 (51%)

Query:    31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVM 90
             N   +W +  +  +FKA LP G K EE+K+E  ED  +LK+S     G+    + E    
Sbjct:    47 NARVDWKETAEAHVFKADLP-GMKKEEVKVE-IEDDSVLKIS-----GERHVEKEEKQDT 99

Query:    91 WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
             W   E  SSG      S+ F LPE V  K +  KAS+E+GVL V
Sbjct:   100 WHRVER-SSGQ----FSRKFKLPENV--KMDQVKASMENGVLTV 136

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEP

UNIPROTKB|Q84Q77 HSP17.9A "17.9 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 35/100 (35%), Positives = 52/100 (52%)

Query:    35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
             +W +  +  +FKA +P G K EE+K+E  +DG +L++S     G+    + E    W   
Sbjct:    57 DWKETPEAHVFKADVP-GLKKEEVKVE-VDDGNILQIS-----GERNKEQEEKTDQWHRV 109

Query:    95 ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134
             E  S   GK    + F LP+    KP   KAS+E+GVL V
Sbjct:   110 ERSS---GKF--LRRFRLPDNA--KPEQIKASMENGVLTV 142

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 43/123 (34%), Positives = 60/123 (48%)

Query:    12 LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL 71
             LVPA +   TA      F N   +W +  ++ +FKA LP G K EE+K+E  E+G +L +
Sbjct:    27 LVPATSDRDTAA-----FANARVDWKETPESHVFKADLP-GVKKEEVKVE-VEEGNVLVI 79

Query:    72 SKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGV 131
             S     G     + +    W   E  SSG       + F LPE    K +  KAS+E+GV
Sbjct:    80 S-----GQRSKEKEDKNDKWHRVER-SSGQ----FMRRFRLPENA--KVDQVKASMENGV 127

Query:   132 LNV 134
             L V
Sbjct:   128 LTV 130

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 40/120 (33%), Positives = 57/120 (47%)

Query:    16 ANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVL 75
             ANA  +  +    F N   +W +  +  +FKA LP G K EE+K+E  ED  +L++S   
Sbjct:    38 ANA--STARDVAAFTNARVDWKETPEAHVFKADLP-GLKKEEVKVE-VEDKNVLQIS--- 90

Query:    76 PEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVI 135
               G+      E    W   E  S   GK    + F LPE    K    KA++E+GVL V+
Sbjct:    91 --GERSKENEEKNDKWHRVERAS---GKF--MRRFRLPENA--KMEEVKATMENGVLTVV 141

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0010286 "heat acclimation" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PRK11597	142	heat shock chaperone IbpB; Provisional	99.95
PRK10743	137	heat shock protein IbpA; Provisional	99.95
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.95
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.95
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.93
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.92
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.91
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.89
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.88
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.87
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.87
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.87
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.86
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.85
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.84
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.84
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.83
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.82
KOG0710	196	consensus Molecular chaperone (small heat-shock pr	99.81
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.66
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.53
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	99.49
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.32
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	99.14
cd06463	84	p23_like Proteins containing this p23_like domain	98.99
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.74
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.33
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	98.04
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.73
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.72
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.52
cd06488	87	p23_melusin_like p23_like domain similar to the C-	97.49
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.44
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.32
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	96.92
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	96.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.25
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	96.09
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	94.9
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	94.7
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	93.29
PF14913	194	DPCD: DPCD protein family	81.71
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	80.37

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.95  E-value=6.1e-28  Score=188.71  Aligned_cols=102  Identities=19%  Similarity=0.277  Sum_probs=86.5

Q ss_pred             cCceeeEEEC-CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           30 LNINGEWDDA-GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        30 ~~p~vDi~Et-~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      ..|++||+|+ +++|+|.|+|| |++|+||+|++  ++++|+|+|++     +.+  .++.+|+++|| ++|  +  |+|
T Consensus        31 ~~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v--~~~~LtI~ge~-----~~~--~~~~~~~~~Er-~~g--~--F~R   95 (142)
T PRK11597         31 SFPPYNIEKSDDNHYRITLALA-GFRQEDLDIQL--EGTRLTVKGTP-----EQP--EKEVKWLHQGL-VNQ--P--FSL   95 (142)
T ss_pred             CCCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEE--ECCEEEEEEEE-----ccc--cCCCcEEEEEE-eCc--E--EEE
Confidence            4589999984 77999999999 99999999999  68899999998     322  24568999999 899  8  999


Q ss_pred             EEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeec
Q 039847          109 SFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVL  150 (172)
Q Consensus       109 ~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~  150 (172)
                      +|.||++|+.  +  +|+|+||||+|+|||.+++..+.++|.
T Consensus        96 ~f~LP~~vd~--~--~A~~~nGVL~I~lPK~~~~~~~~rkI~  133 (142)
T PRK11597         96 SFTLAENMEV--S--GATFVNGLLHIDLIRNEPEAIAPQRIA  133 (142)
T ss_pred             EEECCCCccc--C--cCEEcCCEEEEEEeccCccccCCcEEE
Confidence            9999999988  6  799999999999999854444445553

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.95  E-value=1.1e-27  Score=186.24  Aligned_cols=99  Identities=15%  Similarity=0.256  Sum_probs=85.3

Q ss_pred             ceeeEE-ECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           32 INGEWD-DAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        32 p~vDi~-Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      |++||+ +++++|+|.|+|| |++|+||+|++  ++++|+|+|++     +.+  .++.+|+++|| ++|  +  |+|+|
T Consensus        35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v--~~~~LtI~ge~-----~~~--~~~~~~~~~Er-~~g--~--F~R~~   99 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVA-GFAESELEITA--QDNLLVVKGAH-----ADE--QKERTYLYQGI-AER--N--FERKF   99 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----Ccc--ccCCcEEEEEE-ECC--E--EEEEE
Confidence            889999 4899999999999 99999999999  57799999998     332  23567999999 899  8  99999


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      .||++|+.  +  +|+|+||||+|+|||.++++.+.++|
T Consensus       100 ~LP~~Vd~--~--~A~~~dGVL~I~lPK~~~~~~~~r~I  134 (137)
T PRK10743        100 QLAENIHV--R--GANLVNGLLYIDLERVIPEAKKPRRI  134 (137)
T ss_pred             ECCCCccc--C--cCEEeCCEEEEEEeCCCccccCCeEE
Confidence            99999988  7  49999999999999985544445555

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-27  Score=185.42  Aligned_cols=105  Identities=24%  Similarity=0.399  Sum_probs=92.9

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      ..|++||+|+++.|+|.++|| ||+|+||+|++  .++.|+|+|++     ..+.+.+...|+++|| .+|  +  |+|+
T Consensus        39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~--~~~~l~I~g~~-----~~~~~~~~~~~~~~e~-~~~--~--f~r~  105 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITV--EGNTLTIRGER-----EEEEEEEEEGYLRRER-AYG--E--FERT  105 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEE--ECCEEEEEEEe-----cccccccCCceEEEEE-Eee--e--EEEE
Confidence            579999999999999999999 99999999999  67899999999     4445556778999999 888  8  9999


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      |.||..++.  +.++|+|+||||+|+|||.++++.+.++|
T Consensus       106 ~~Lp~~v~~--~~~~A~~~nGvL~I~lpk~~~~~~~~~~i  143 (146)
T COG0071         106 FRLPEKVDP--EVIKAKYKNGLLTVTLPKAEPEEKKPKRI  143 (146)
T ss_pred             EECcccccc--cceeeEeeCcEEEEEEeccccccccCcee
Confidence            999999987  89999999999999999998874444443

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.95  E-value=2.1e-27  Score=171.49  Aligned_cols=92  Identities=36%  Similarity=0.599  Sum_probs=82.6

Q ss_pred             eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL  112 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L  112 (172)
                      ++||+|++++|+|.++|| ||+|+||+|++ .++++|+|+|++     ..+...++..|+++|| .+|  +  |+|+|.|
T Consensus         1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v-~~~~~L~I~g~~-----~~~~~~~~~~~~~~e~-~~g--~--f~r~i~L   68 (92)
T cd06472           1 RVDWKETPEAHVFKADVP-GVKKEDVKVEV-EDGRVLRISGER-----KKEEEKKGDDWHRVER-SSG--R--FVRRFRL   68 (92)
T ss_pred             CccEEEcCCeEEEEEECC-CCChHhEEEEE-eCCCEEEEEEEe-----cccccccCCCEEEEEE-ecc--E--EEEEEEC
Confidence            589999999999999999 99999999999 345699999998     3333445678999999 888  8  9999999


Q ss_pred             CCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847          113 PEGVIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       113 P~~vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      |.+++.  ++|+|+|+||||+|++||
T Consensus        69 P~~v~~--~~i~A~~~nGvL~I~lPK   92 (92)
T cd06472          69 PENADA--DEVKAFLENGVLTVTVPK   92 (92)
T ss_pred             CCCCCH--HHCEEEEECCEEEEEecC
Confidence            999988  999999999999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.93  E-value=1.1e-25  Score=162.34  Aligned_cols=93  Identities=29%  Similarity=0.462  Sum_probs=80.8

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      |++||+|++++|+|.++|| |++++||+|++  +++.|+|+|+++..   .+....+..|+++|| .+|  +  |.|+|.
T Consensus         1 ~~~di~e~~~~~~i~~~lP-Gv~~edi~v~~--~~~~L~I~g~~~~~---~~~~~~~~~~~~~e~-~~g--~--f~r~~~   69 (93)
T cd06471           1 MKTDIKETDDEYIVEADLP-GFKKEDIKLDY--KDGYLTISAKRDES---KDEKDKKGNYIRRER-YYG--S--FSRSFY   69 (93)
T ss_pred             CceeEEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEccc---cccccccCCEEEEee-ecc--E--EEEEEE
Confidence            4799999999999999999 99999999999  67899999999321   112223457999999 888  8  999999


Q ss_pred             CCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847          112 LPEGVIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      || +++.  ++|+|+|+||+|+|++||
T Consensus        70 lp-~v~~--~~i~A~~~dGvL~I~lPK   93 (93)
T cd06471          70 LP-NVDE--EEIKAKYENGVLKITLPK   93 (93)
T ss_pred             CC-CCCH--HHCEEEEECCEEEEEEcC
Confidence            99 6877  999999999999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.92  E-value=8.2e-25  Score=157.94  Aligned_cols=89  Identities=21%  Similarity=0.350  Sum_probs=78.8

Q ss_pred             ceeeEEECC-CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           32 INGEWDDAG-DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        32 p~vDi~Et~-d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      |++|++|++ ++|+|.++|| |++|+||+|++  +++.|+|+|++     +.+.. ++.+|+++|| .+|  +  |.|+|
T Consensus         1 p~~di~e~~~~~~~v~~~lP-G~~kedi~v~~--~~~~L~I~g~~-----~~~~~-~~~~~~~~e~-~~g--~--f~R~~   66 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVA-GFSEDDLEIEV--ENNQLTVTGKK-----ADEEN-EEREYLHRGI-AKR--A--FERSF   66 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccccc-CCCcEEEEEE-ece--E--EEEEE
Confidence            679999985 9999999999 99999999999  67899999999     33332 5668999999 888  8  99999


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      .||.+++.    ++|+|+||+|+|+||+
T Consensus        67 ~LP~~vd~----~~A~~~~GvL~I~l~~   90 (90)
T cd06470          67 NLADHVKV----KGAELENGLLTIDLER   90 (90)
T ss_pred             ECCCCceE----CeeEEeCCEEEEEEEC
Confidence            99998876    4999999999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.91  E-value=1.1e-23  Score=153.22  Aligned_cols=99  Identities=28%  Similarity=0.397  Sum_probs=79.6

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      ||.|+++.|.|.++|| ||.++||+|++  +++.|+|+|++     .  ....+..|++.|+ ++|  .  |.|+|.||+
T Consensus         1 di~e~~~~~~i~~~lp-G~~~edi~I~~--~~~~L~I~g~~-----~--~~~~~~~~~~~~~-~~~--~--f~r~~~lP~   65 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLP-GFDKEDIKIKV--DDNKLVISGKR-----K--EEEEDDRYYRSER-RYG--S--FERSIRLPE   65 (102)
T ss_dssp             EEEESSSEEEEEEE-T-TS-GGGEEEEE--ETTEEEEEEEE-----E--GEECTTCEEEE-S--SE--E--EEEEEE-ST
T ss_pred             CeEECCCEEEEEEECC-CCChHHEEEEE--ecCccceecee-----e--eeeeeeeeeeccc-ccc--e--EEEEEcCCC
Confidence            8999999999999999 99999999999  67789999999     3  3345567888888 777  7  999999999


Q ss_pred             CCcCCCCcEEEEEeCCEEEEEEeccCCCCc-ceeeec
Q 039847          115 GVIVKPNCFKASVEDGVLNVIFTKLKSKKK-IMSKVL  150 (172)
Q Consensus       115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~-~~~~I~  150 (172)
                      +++.  ++|+|+|+||+|+|++||....+. ..++|+
T Consensus        66 ~vd~--~~i~a~~~~GvL~I~~pk~~~~~~~~~~~I~  100 (102)
T PF00011_consen   66 DVDP--DKIKASYENGVLTITIPKKEEEEDSQPKRIP  100 (102)
T ss_dssp             TB-G--GG-EEEETTSEEEEEEEBSSSCTTSSSCEE-
T ss_pred             cCCc--ceEEEEecCCEEEEEEEccccccCCCCeEEE
Confidence            9988  999999999999999999987643 555553

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.89  E-value=1.3e-22  Score=145.98  Aligned_cols=82  Identities=15%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      ++++++++|.|.++|| ||+++||+|++  .++.|+|+|++     ....  ++..|+++        .  |+|+|.||+
T Consensus         4 ~v~e~~~~~~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~~--------e--f~R~~~LP~   63 (86)
T cd06497           4 EVRSDRDKFTIYLDVK-HFSPEDLTVKV--LDDYVEIHGKH-----SERQ--DDHGYISR--------E--FHRRYRLPS   63 (86)
T ss_pred             eEEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--CCCCEEEE--------E--EEEEEECCC
Confidence            7899999999999999 99999999999  67899999997     2222  22345432        4  999999999


Q ss_pred             CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847          115 GVIVKPNCFKASV-EDGVLNVIFTK  138 (172)
Q Consensus       115 ~vd~~~d~I~A~~-~nGVL~V~vPK  138 (172)
                      +|+.  ++|+|+| +||||+|++||
T Consensus        64 ~Vd~--~~i~A~~~~dGvL~I~~PK   86 (86)
T cd06497          64 NVDQ--SAITCSLSADGMLTFSGPK   86 (86)
T ss_pred             CCCh--HHeEEEeCCCCEEEEEecC
Confidence            9988  9999999 89999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.88  E-value=4.2e-22  Score=142.24  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=69.3

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      ++.+++++|.|.++|| ||+++||+|++  .++.|+|+|++     ..+.  ++..|++  |      .  |+|+|.||.
T Consensus         1 ~~~~~~~~~~v~~dlp-G~~~edI~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~--~------e--f~R~~~LP~   60 (83)
T cd06478           1 EVRLDKDRFSVNLDVK-HFSPEELSVKV--LGDFVEIHGKH-----EERQ--DEHGFIS--R------E--FHRRYRLPP   60 (83)
T ss_pred             CeeecCceEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ceEc--CCCCEEE--E------E--EEEEEECCC
Confidence            3678999999999999 99999999999  67899999998     2211  1234543  2      4  999999999


Q ss_pred             CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847          115 GVIVKPNCFKASV-EDGVLNVIFTK  138 (172)
Q Consensus       115 ~vd~~~d~I~A~~-~nGVL~V~vPK  138 (172)
                      +|+.  ++|+|+| +||||+|++||
T Consensus        61 ~vd~--~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478          61 GVDP--AAITSSLSADGVLTISGPR   83 (83)
T ss_pred             CcCh--HHeEEEECCCCEEEEEecC
Confidence            9988  9999999 79999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.87  E-value=7.1e-22  Score=141.62  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847           36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG  115 (172)
Q Consensus        36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~  115 (172)
                      +.+++++|.|.++|| ||+++||+|++  .++.|+|+|++     ..+.  ++..|++  |      .  |+|+|.||.+
T Consensus         2 ~~~~~~~~~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~--~------e--F~R~~~LP~~   61 (84)
T cd06498           2 MRLEKDKFSVNLDVK-HFSPEELKVKV--LGDFIEIHGKH-----EERQ--DEHGFIS--R------E--FQRKYRIPAD   61 (84)
T ss_pred             eEeCCceEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--CCCCEEE--E------E--EEEEEECCCC
Confidence            567899999999999 99999999999  67899999998     2222  2234542  2      5  9999999999


Q ss_pred             CcCCCCcEEEEEe-CCEEEEEEecc
Q 039847          116 VIVKPNCFKASVE-DGVLNVIFTKL  139 (172)
Q Consensus       116 vd~~~d~I~A~~~-nGVL~V~vPK~  139 (172)
                      |+.  ++|+|+|. ||||+|++||+
T Consensus        62 vd~--~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498          62 VDP--LTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             CCh--HHcEEEeCCCCEEEEEEeCC
Confidence            988  99999995 99999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.87  E-value=3.9e-22  Score=142.43  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      |+.|++++|.|.++|| ||+||||+|++  +++.|+|+|++     +.+.   +       + .+|  +  |+|+|.||.
T Consensus         2 ~v~e~~~~~~v~~dlp-G~~pedi~V~v--~~~~L~I~ger-----~~~~---~-------~-~~g--~--F~R~~~LP~   58 (81)
T cd06479           2 NVKTLGDTYQFAVDVS-DFSPEDIIVTT--SNNQIEVHAEK-----LASD---G-------T-VMN--T--FTHKCQLPE   58 (81)
T ss_pred             CccCcCCeEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----eccC---C-------C-EEE--E--EEEEEECCC
Confidence            7899999999999999 99999999999  67899999998     2221   1       1 346  7  999999999


Q ss_pred             CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847          115 GVIVKPNCFKASV-EDGVLNVIFTK  138 (172)
Q Consensus       115 ~vd~~~d~I~A~~-~nGVL~V~vPK  138 (172)
                      +|+.  ++|+|+| +||||+|++++
T Consensus        59 ~vd~--e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479          59 DVDP--TSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             CcCH--HHeEEEecCCCEEEEEecC
Confidence            9988  9999997 99999999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.87  E-value=1.8e-21  Score=140.07  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=69.7

Q ss_pred             eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847           34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP  113 (172)
Q Consensus        34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP  113 (172)
                      -||+|++++|.|.++|| ||+|++|+|++  +++.|+|+|++     ..++ + ...++  +|      +  |+|+|.||
T Consensus         3 ~~i~e~~~~~~v~~dlP-G~~~edi~V~v--~~~~L~I~g~~-----~~~~-~-~~~~~--~~------~--f~R~f~LP   62 (86)
T cd06475           3 SEIRQTADRWKVSLDVN-HFAPEELVVKT--KDGVVEITGKH-----EEKQ-D-EHGFV--SR------C--FTRKYTLP   62 (86)
T ss_pred             ceEEEcCCeEEEEEECC-CCCHHHEEEEE--ECCEEEEEEEE-----CcCc-C-CCCEE--EE------E--EEEEEECC
Confidence            58999999999999999 99999999999  67899999998     2221 1 12232  22      5  99999999


Q ss_pred             CCCcCCCCcEEEEEe-CCEEEEEEe
Q 039847          114 EGVIVKPNCFKASVE-DGVLNVIFT  137 (172)
Q Consensus       114 ~~vd~~~d~I~A~~~-nGVL~V~vP  137 (172)
                      ++|+.  ++|+|+|. ||||+|++|
T Consensus        63 ~~vd~--~~v~A~~~~dGvL~I~lP   85 (86)
T cd06475          63 PGVDP--TAVTSSLSPDGILTVEAP   85 (86)
T ss_pred             CCCCH--HHcEEEECCCCeEEEEec
Confidence            99988  99999997 999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.86  E-value=2.3e-21  Score=139.71  Aligned_cols=83  Identities=18%  Similarity=0.278  Sum_probs=70.0

Q ss_pred             ECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCc
Q 039847           38 DAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVI  117 (172)
Q Consensus        38 Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd  117 (172)
                      +..+.|.|.++|| ||+++||+|++  +++.|+|+|++     +.+.+.+...|++    .+|  +  |+|+|.||++|+
T Consensus         4 ~~~d~~~v~~dlp-G~~~edI~V~v--~~~~L~I~g~~-----~~~~~~~~~~~~~----~~~--~--F~R~~~LP~~Vd   67 (87)
T cd06481           4 DGKEGFSLKLDVR-GFSPEDLSVRV--DGRKLVVTGKR-----EKKNEDEKGSFSY----EYQ--E--FVREAQLPEHVD   67 (87)
T ss_pred             CccceEEEEEECC-CCChHHeEEEE--ECCEEEEEEEE-----eeecccCCCcEEE----Eee--E--EEEEEECCCCcC
Confidence            4568999999999 99999999999  68899999998     3333333345543    456  7  999999999998


Q ss_pred             CCCCcEEEEE-eCCEEEEEEec
Q 039847          118 VKPNCFKASV-EDGVLNVIFTK  138 (172)
Q Consensus       118 ~~~d~I~A~~-~nGVL~V~vPK  138 (172)
                      .  ++|+|+| +||||+|++|+
T Consensus        68 ~--~~i~A~~~~dGvL~I~~P~   87 (87)
T cd06481          68 P--EAVTCSLSPSGHLHIRAPR   87 (87)
T ss_pred             h--HHeEEEeCCCceEEEEcCC
Confidence            8  9999999 99999999995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.85  E-value=1e-20  Score=135.43  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=66.6

Q ss_pred             EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847           37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV  116 (172)
Q Consensus        37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v  116 (172)
                      ..++++|.|.++|| ||+++||+|++  .++.|+|+|++     ....  ....|++      +  .  |+|+|.||++|
T Consensus         3 ~~~~d~y~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~------~--e--F~R~~~LP~~v   62 (83)
T cd06476           3 ESEDDKYQVFLDVC-HFTPDEITVRT--VDNLLEVSARH-----PQRM--DRHGFVS------R--E--FTRTYILPMDV   62 (83)
T ss_pred             eccCCeEEEEEEcC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--cCCCEEE------E--E--EEEEEECCCCC
Confidence            45689999999999 99999999999  67899999998     2221  1222332      3  5  99999999999


Q ss_pred             cCCCCcEEEEEe-CCEEEEEEec
Q 039847          117 IVKPNCFKASVE-DGVLNVIFTK  138 (172)
Q Consensus       117 d~~~d~I~A~~~-nGVL~V~vPK  138 (172)
                      +.  ++|+|+|. ||||+|++||
T Consensus        63 d~--~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476          63 DP--LLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             Ch--hhEEEEecCCCEEEEEecC
Confidence            88  99999995 9999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.84  E-value=1.9e-20  Score=130.92  Aligned_cols=88  Identities=35%  Similarity=0.531  Sum_probs=76.4

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      |+.|++++|++.++|| |+++++|+|++  +++.|.|+|++.     ...... ..+...|+ .+|  .  |.|+|.||.
T Consensus         1 ~i~e~~~~~~i~~~lp-g~~~~~i~V~v--~~~~l~I~g~~~-----~~~~~~-~~~~~~~~-~~~--~--f~r~~~LP~   66 (88)
T cd06464           1 DVYETDDAYVVEADLP-GFKKEDIKVEV--EDGVLTISGERE-----EEEEEE-ENYLRRER-SYG--S--FSRSFRLPE   66 (88)
T ss_pred             CcEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEe-----cccccC-CcEEEEEE-eCc--E--EEEEEECCC
Confidence            5789999999999999 99999999999  678999999993     222222 26777787 777  8  999999999


Q ss_pred             CCcCCCCcEEEEEeCCEEEEEEec
Q 039847          115 GVIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       115 ~vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      +++.  +.++|+|+||+|+|++||
T Consensus        67 ~vd~--~~i~a~~~~G~L~I~~pk   88 (88)
T cd06464          67 DVDP--DKIKASLENGVLTITLPK   88 (88)
T ss_pred             CcCH--HHcEEEEeCCEEEEEEcC
Confidence            9988  999999999999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.84  E-value=8.2e-21  Score=137.34  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=67.8

Q ss_pred             CCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcC
Q 039847           39 AGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIV  118 (172)
Q Consensus        39 t~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~  118 (172)
                      .+++|+|.|+|| ||+|+||+|++  .++.|+|+|++     +.+++..+    ..|| ++|  +  |.|+|.||.+|+.
T Consensus         6 ~~~~~~v~adlP-G~~kedI~V~v--~~~~L~I~ger-----~~~~e~~~----~~er-~~g--~--F~R~f~LP~~Vd~   68 (87)
T cd06482           6 DSSNVLASVDVC-GFEPDQVKVKV--KDGKVQVSAER-----ENRYDCLG----SKKY-SYM--N--ICKEFSLPPGVDE   68 (87)
T ss_pred             cCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ecccccCC----ccEE-EEE--E--EEEEEECCCCcCh
Confidence            468999999999 99999999999  67899999999     33222211    2477 788  8  9999999999988


Q ss_pred             CCCcEEEEEeCC-EEEEEEe
Q 039847          119 KPNCFKASVEDG-VLNVIFT  137 (172)
Q Consensus       119 ~~d~I~A~~~nG-VL~V~vP  137 (172)
                        ++|+|+|+|| ||+|.-|
T Consensus        69 --d~i~A~~~~~~~l~i~~~   86 (87)
T cd06482          69 --KDVTYSYGLGSVVKIETP   86 (87)
T ss_pred             --HHcEEEEcCCCEEEEeeC
Confidence              9999999887 9999877

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.83  E-value=3.9e-20  Score=132.70  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847           37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV  116 (172)
Q Consensus        37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v  116 (172)
                      .|+++.|.|.++|| ||+||||+|++  .++.|+|+|++     ..+.+  ...++  +|      +  |+|+|.||.+|
T Consensus         3 ~e~~~~~~v~~dlp-G~~~edI~V~v--~~~~L~I~ge~-----~~~~~--~~~~~--~r------~--F~R~~~LP~~V   62 (83)
T cd06477           3 EEGKPMFQILLDVV-QFRPEDIIIQV--FEGWLLIKGQH-----GVRMD--EHGFI--SR------S--FTRQYQLPDGV   62 (83)
T ss_pred             ccCCceEEEEEEcC-CCCHHHeEEEE--ECCEEEEEEEE-----ccccC--CCCEE--EE------E--EEEEEECCCCc
Confidence            47889999999999 99999999999  78899999998     33221  22332  23      5  99999999999


Q ss_pred             cCCCCcEEEEE-eCCEEEEEEe
Q 039847          117 IVKPNCFKASV-EDGVLNVIFT  137 (172)
Q Consensus       117 d~~~d~I~A~~-~nGVL~V~vP  137 (172)
                      +.  ++|+|+| +||||+|+.|
T Consensus        63 d~--~~v~A~~~~dGvL~I~~~   82 (83)
T cd06477          63 EH--KDLSAMLCHDGILVVETK   82 (83)
T ss_pred             ch--heEEEEEcCCCEEEEEec
Confidence            88  9999998 8999999875

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.82  E-value=3.3e-20  Score=131.66  Aligned_cols=77  Identities=25%  Similarity=0.374  Sum_probs=64.5

Q ss_pred             CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcCC
Q 039847           40 GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVK  119 (172)
Q Consensus        40 ~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~~  119 (172)
                      ++.|.|.++|| ||+++||+|++  +++.|+|+|++     +....  ...|      .+|  +  |.|+|.||.+|+. 
T Consensus         6 ~~~~~v~~dlp-G~~~edI~v~v--~~~~L~I~g~~-----~~~~~--~~~~------~~~--~--f~r~~~LP~~vd~-   64 (83)
T cd06526           6 DEKFQVTLDVK-GFKPEELKVKV--SDNKLVVEGKH-----EERED--EHGY------VSR--E--FTRRYQLPEGVDP-   64 (83)
T ss_pred             CeeEEEEEECC-CCCHHHcEEEE--ECCEEEEEEEE-----eeecc--CCCE------EEE--E--EEEEEECCCCCCh-
Confidence            36999999999 99999999999  67899999998     22211  1122      334  6  9999999999988 


Q ss_pred             CCcEEEEEeC-CEEEEEEec
Q 039847          120 PNCFKASVED-GVLNVIFTK  138 (172)
Q Consensus       120 ~d~I~A~~~n-GVL~V~vPK  138 (172)
                       ++++|+|.| |+|+|++||
T Consensus        65 -~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526          65 -DSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             -HHeEEEeCCCcEEEEEecC
Confidence             999999998 999999998

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.6e-20  Score=150.78  Aligned_cols=108  Identities=34%  Similarity=0.493  Sum_probs=94.5

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcc--cccccEEEEeeeecCCCeeeEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEH--EAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~--~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      +.++.++.|+.+.|++.++|| |+++++++|++ +++++|+|+|++     ..+.+  .....|+..|| ..|  .  |.
T Consensus        83 ~~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~-~~~~~l~isGe~-----~~e~e~~~~~~~~~~~E~-~~g--~--F~  150 (196)
T KOG0710|consen   83 ARVPWDVKESPDAHEFKVDLP-GLKKEDIKVEV-EDEKVLTISGER-----KKEEEESGSGKKWKRVER-KLG--K--FK  150 (196)
T ss_pred             ccCCcccccCCCceEEEeeCC-CCCchhceEEe-ccCcEEEEeccc-----ccccccccCCccceeehh-ccc--c--eE
Confidence            456778899999999999999 99999999999 566699999999     33333  35678999999 888  8  99


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCC--CCcceeeece
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS--KKKIMSKVLG  151 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~--~k~~~~~I~~  151 (172)
                      |+|.||++++.  +.|+|.|+||||+|+|||...  +++.++.|..
T Consensus       151 r~~~lPenv~~--d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i  194 (196)
T KOG0710|consen  151 RRFELPENVDV--DEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI  194 (196)
T ss_pred             eeecCCccccH--HHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence            99999999988  999999999999999999988  6788877754

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.66  E-value=8.9e-16  Score=111.99  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847           37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV  116 (172)
Q Consensus        37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v  116 (172)
                      .++++.|.|.+++. ||++|||+|.+  .++.|+|+|++     ...+ ++. .++.  |      +  |.|+|.||++|
T Consensus        11 ~~~~~~f~v~ldv~-gF~pEDL~Vkv--~~~~L~V~Gkh-----~~~~-~e~-g~~~--r------~--F~R~~~LP~~V   70 (91)
T cd06480          11 PNSSEPWKVCVNVH-SFKPEELTVKT--KDGFVEVSGKH-----EEQQ-KEG-GIVS--K------N--FTKKIQLPPEV   70 (91)
T ss_pred             CCCCCcEEEEEEeC-CCCHHHcEEEE--ECCEEEEEEEE-----Cccc-CCC-CEEE--E------E--EEEEEECCCCC
Confidence            45778999999999 99999999999  67899999998     3222 222 2321  3      6  99999999999


Q ss_pred             cCCCCcEEEEEe-CCEEEEEEec
Q 039847          117 IVKPNCFKASVE-DGVLNVIFTK  138 (172)
Q Consensus       117 d~~~d~I~A~~~-nGVL~V~vPK  138 (172)
                      +.  +.|+|+|. ||+|+|.+|.
T Consensus        71 d~--~~v~s~l~~dGvL~IeaP~   91 (91)
T cd06480          71 DP--VTVFASLSPEGLLIIEAPQ   91 (91)
T ss_pred             Cc--hhEEEEeCCCCeEEEEcCC
Confidence            88  99999997 9999999983

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.53  E-value=9.1e-14  Score=93.10  Aligned_cols=80  Identities=38%  Similarity=0.620  Sum_probs=67.5

Q ss_pred             EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847           36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG  115 (172)
Q Consensus        36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~  115 (172)
                      |.++++.|.|.++|| |+.+++++|.+  +++.|.|+|.+..     ...        .++ ..+  .  |.+.|.||..
T Consensus         1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~--~~~~l~v~~~~~~-----~~~--------~~~-~~~--~--~~~~~~L~~~   59 (80)
T cd00298           1 WYQTDDEVVVTVDLP-GVKKEDIKVEV--EDNVLTISGKREE-----EEE--------RER-SYG--E--FERSFELPED   59 (80)
T ss_pred             CEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEcC-----CCc--------ceE-eee--e--EEEEEECCCC
Confidence            678899999999999 99999999999  5689999999822     111        112 223  5  9999999999


Q ss_pred             CcCCCCcEEEEEeCCEEEEEEec
Q 039847          116 VIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       116 vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      ++.  ++++|+|.+|+|+|++||
T Consensus        60 i~~--~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298          60 VDP--EKSKASLENGVLEITLPK   80 (80)
T ss_pred             cCH--HHCEEEEECCEEEEEEcC
Confidence            987  999999999999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.6e-13  Score=108.58  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      ...++..+.+.|.|.+|+- .|++|+|.|.+  .|+.|.|.|++      .+.++ +..  +..|      +  |.|+|.
T Consensus        63 ~~~~~~~~~~~F~V~lDV~-~F~PeEl~Vk~--~~~~l~V~gkH------eer~d-~~G--~v~R------~--F~R~y~  122 (173)
T KOG3591|consen   63 GASEIVNDKDKFEVNLDVH-QFKPEELKVKT--DDNTLEVEGKH------EEKED-EHG--YVSR------S--FVRKYL  122 (173)
T ss_pred             cccccccCCCcEEEEEEcc-cCcccceEEEe--CCCEEEEEeee------ccccC-CCC--eEEE------E--EEEEec
Confidence            4578899999999999999 99999999999  78899999998      12222 222  2334      5  999999


Q ss_pred             CCCCCcCCCCcEEEEE-eCCEEEEEEeccCCCCcceeee
Q 039847          112 LPEGVIVKPNCFKASV-EDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~-~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      ||++++.  +.|++.+ .+|+|+|+.||.+.....-+.|
T Consensus       123 LP~~vdp--~~V~S~LS~dGvLtI~ap~~~~~~~~er~i  159 (173)
T KOG3591|consen  123 LPEDVDP--TSVTSTLSSDGVLTIEAPKPPPKQDNERSI  159 (173)
T ss_pred             CCCCCCh--hheEEeeCCCceEEEEccCCCCcCccceEE
Confidence            9999977  9999999 8899999999998765433444

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.32  E-value=1.3e-11  Score=85.48  Aligned_cols=71  Identities=18%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847           36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG  115 (172)
Q Consensus        36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~  115 (172)
                      |+++++.+.|.+++| |+++++++|++  .++.|+|+| .                           .  |.+.+.||..
T Consensus         1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~--~~~~l~i~~-~---------------------------~--~~~~~~l~~~   47 (78)
T cd06469           1 WSQTDEDVKISVPLK-GVKTSKVDIFC--SDLYLKVNF-P---------------------------P--YLFELDLAAP   47 (78)
T ss_pred             CcccCCEEEEEEEeC-CCccccceEEE--ecCEEEEcC-C---------------------------C--EEEEEeCccc
Confidence            678999999999999 99999999999  567788765 1                           3  7788999999


Q ss_pred             CcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          116 VIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       116 vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      |+.  ++.+|++.+|.|.|+|||.++
T Consensus        48 I~~--e~~~~~~~~~~l~i~L~K~~~   71 (78)
T cd06469          48 IDD--EKSSAKIGNGVLVFTLVKKEP   71 (78)
T ss_pred             ccc--cccEEEEeCCEEEEEEEeCCC
Confidence            977  999999999999999999864

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=99.14  E-value=5.6e-10  Score=90.25  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             cCceeeEEECCC-eEEEEEecCCCCCCCc-eEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           30 LNINGEWDDAGD-NLMFKATLPTGTKMEE-LKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        30 ~~p~vDi~Et~d-~~vv~adLP~Gv~ked-I~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      ..+.+++.+.++ .++|.|+|| |+++++ |+|.+..+...|+|+...                           .  |.
T Consensus        90 ~~~~vdtre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~---------------------------~--~~  139 (177)
T PF05455_consen   90 ESIHVDTRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGE---------------------------K--YL  139 (177)
T ss_pred             ceeeeeeEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCC---------------------------c--eE
Confidence            357799999888 699999999 999999 999994445666664322                           3  66


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK  142 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~  142 (172)
                      +.+.||.. ..  +.++|+|+||||+|+|-+.++.
T Consensus       140 krv~L~~~-~~--e~~~~t~nNgILEIri~~~~~~  171 (177)
T PF05455_consen  140 KRVALPWP-DP--EITSATFNNGILEIRIRRTEES  171 (177)
T ss_pred             eeEecCCC-cc--ceeeEEEeCceEEEEEeecCCC
Confidence            78999965 45  8899999999999999887654

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.99  E-value=5.6e-09  Score=71.50  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847           36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG  115 (172)
Q Consensus        36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~  115 (172)
                      |.++++.+.|.+.+| |..+++++|.+  .++.|+|++..     .      +          .+  .  |...+.|+..
T Consensus         1 W~Q~~~~v~i~v~~~-~~~~~~~~v~~--~~~~l~i~~~~-----~------~----------~~--~--~~~~~~L~~~   52 (84)
T cd06463           1 WYQTLDEVTITIPLK-DVTKKDVKVEF--TPKSLTVSVKG-----G------G----------GK--E--YLLEGELFGP   52 (84)
T ss_pred             CcccccEEEEEEEcC-CCCccceEEEE--ecCEEEEEeeC-----C------C----------CC--c--eEEeeEccCc
Confidence            578899999999999 99999999999  56789999876     1      0          11  4  7788899999


Q ss_pred             CcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          116 VIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       116 vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      ++.  ++.++++.+|.|.|+|+|+++
T Consensus        53 I~~--~~s~~~~~~~~l~i~L~K~~~   76 (84)
T cd06463          53 IDP--EESKWTVEDRKIEITLKKKEP   76 (84)
T ss_pred             cch--hhcEEEEeCCEEEEEEEECCC
Confidence            977  999999999999999999865

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.74  E-value=7.6e-08  Score=67.08  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      ||+++++.+.|.+.+| |+.+++++|.+  .++.|.|++..     .      +          .+  .  |...+.|..
T Consensus         1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~--~~~~l~i~~~~-----~------~----------~~--~--~~~~~~L~~   52 (84)
T cd06466           1 DWYQTDTSVTVTIYAK-NVDKEDVKVEF--NEQSLSVSIIL-----P------G----------GS--E--YQLELDLFG   52 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEE--ecCEEEEEEEC-----C------C----------CC--e--EEEeccccc
Confidence            7999999999999999 99999999999  56789998765     1      0          01  3  677888999


Q ss_pred             CCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          115 GVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|+.  +..++++.+|.|.|+|.|.+.
T Consensus        53 ~I~~--~~s~~~~~~~~vei~L~K~~~   77 (84)
T cd06466          53 PIDP--EQSKVSVLPTKVEITLKKAEP   77 (84)
T ss_pred             ccCc--hhcEEEEeCeEEEEEEEcCCC
Confidence            9976  999999999999999999864

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.33  E-value=1.9e-05  Score=53.51  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             ceeeEEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      |+++|.++++...|.+.++ +  +++++++|.+  ..+.|.++...     ..+                  ..  |.-.
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~-~~~~~~~dv~v~~--~~~~l~v~~~~-----~~~------------------~~--~~~~   52 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVK-PVDISKEDVKVDF--TDTSLSVSIKS-----GDG------------------KE--YLLE   52 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-T-TTTSSGGGEEEEE--ETTEEEEEEEE-----TTS------------------CE--EEEE
T ss_pred             CCeEEEECCCEEEEEEEEc-CCCCChHHeEEEE--EeeEEEEEEEc-----cCC------------------ce--EEEE
Confidence            5799999999999999995 4  4599999999  56788888664     100                  03  6667


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTK  138 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK  138 (172)
                      +.|...|+.  +..+.++.++.|.|+|.|
T Consensus        53 ~~L~~~I~~--~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen   53 GELFGEIDP--DESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             EEBSS-BEC--CCEEEEEETTEEEEEEEB
T ss_pred             EEEeeeEcc--hhcEEEEECCEEEEEEEC
Confidence            779999977  999999999999999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=98.04  E-value=8.7e-05  Score=54.68  Aligned_cols=78  Identities=15%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      |+++|+++.+...|.+.+| |+  ++++|.+  ..+.|.|++..     ..    .+ +            .  |.-.+.
T Consensus         1 p~~~W~Qt~~~V~i~i~~~-~~--~~~~V~~--~~~~l~v~~~~-----~~----~~-~------------~--y~~~~~   51 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELP-DA--KDPKIKL--EPTSLSFKAKG-----GG----GG-K------------K--YEFDLE   51 (108)
T ss_pred             CceeeeECCCEEEEEEEeC-CC--CCcEEEE--ECCEEEEEEEc-----CC----CC-e------------e--EEEEeE
Confidence            5799999999999999999 98  8899999  56789998854     00    01 0            2  556778


Q ss_pred             CCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847          112 LPEGVIVKPNCFKASVEDGVLNVIFTKLK  140 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~  140 (172)
                      |...|+.  +..+.++.++-|.|+|.|.+
T Consensus        52 L~~~I~p--e~s~~~v~~~kveI~L~K~~   78 (108)
T cd06465          52 FYKEIDP--EESKYKVTGRQIEFVLRKKE   78 (108)
T ss_pred             hhhhccc--cccEEEecCCeEEEEEEECC
Confidence            9988877  99999999999999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.73  E-value=0.00037  Score=48.91  Aligned_cols=77  Identities=13%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      ||+++++...|.+.++ |+.++++.|++  ..+.|.+++...     .     +.             .  |.-.+.|..
T Consensus         1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~--~~~~l~~~~~~~-----~-----~~-------------~--y~~~~~L~~   52 (84)
T cd06489           1 DWYQTESQVVITILIK-NVKPEDVSVEF--EKRELSATVKLP-----S-----GN-------------D--YSLKLHLLH   52 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEE--eCCEEEEEEECC-----C-----CC-------------c--EEEeeecCc
Confidence            7999999999999999 99999999999  567899987651     0     00             1  444667888


Q ss_pred             CCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          115 GVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .++.  ++.+.+...+-+.|+|.|.+.
T Consensus        53 ~I~p--~~s~~~v~~~kiei~L~K~~~   77 (84)
T cd06489          53 PIVP--EQSSYKILSTKIEIKLKKTEA   77 (84)
T ss_pred             eecc--hhcEEEEeCcEEEEEEEcCCC
Confidence            8866  888888889999999999853

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.72  E-value=0.00022  Score=61.23  Aligned_cols=65  Identities=23%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             CCeEEEEEecCCCC-CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcC
Q 039847           40 GDNLMFKATLPTGT-KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIV  118 (172)
Q Consensus        40 ~d~~vv~adLP~Gv-~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~  118 (172)
                      .+.++|+++|| |+ +..+|+++|  ..+.|.|....                        .  .  |.-.+.||..|+.
T Consensus       260 p~~lvv~i~LP-~~~s~~~i~LdV--~~~~l~l~~~~------------------------~--~--y~L~l~LP~~V~~  308 (328)
T PF08190_consen  260 PEELVVEIELP-GVESASDIDLDV--SEDRLSLSSPK------------------------P--K--YRLDLPLPYPVDE  308 (328)
T ss_pred             CceEEEEEECC-CcCccceeEEEE--eCCEEEEEeCC------------------------C--c--eEEEccCCCcccC
Confidence            58899999999 99 899999999  56678887554                        0  1  5567999999988


Q ss_pred             CCCcEEEEE--eCCEEEEEEe
Q 039847          119 KPNCFKASV--EDGVLNVIFT  137 (172)
Q Consensus       119 ~~d~I~A~~--~nGVL~V~vP  137 (172)
                        +..+|+|  +.++|+|+||
T Consensus       309 --~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  309 --DNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             --CCceEEEccCCCEEEEEEE
Confidence              9999999  4599999998

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.52  E-value=0.0011  Score=46.09  Aligned_cols=75  Identities=27%  Similarity=0.329  Sum_probs=58.3

Q ss_pred             eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847           35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE  114 (172)
Q Consensus        35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~  114 (172)
                      +|.++++...|.+.+|.|+.++|+++++  ..+.|+|+...             ..++     ..|          .|..
T Consensus         2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~--~~~~l~v~~~~-------------~~~~-----l~~----------~L~~   51 (85)
T cd06467           2 SWTQTLDEVTVTIPLPEGTKSKDVKVEI--TPKHLKVGVKG-------------GEPL-----LDG----------ELYA   51 (85)
T ss_pred             EEEeeCCEEEEEEECCCCCcceeEEEEE--EcCEEEEEECC-------------CCce-----EcC----------cccC
Confidence            6899999999999998678999999999  45778887542             0111     112          3666


Q ss_pred             CCcCCCCcEEEEEeC-CEEEEEEeccCC
Q 039847          115 GVIVKPNCFKASVED-GVLNVIFTKLKS  141 (172)
Q Consensus       115 ~vd~~~d~I~A~~~n-GVL~V~vPK~~~  141 (172)
                      .|+.  +...-++.+ ..|.|+|+|.++
T Consensus        52 ~I~~--~~s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467          52 KVKV--DESTWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             ceeE--cCCEEEEeCCCEEEEEEEECCC
Confidence            7766  888888999 999999999865

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=97.49  E-value=0.0024  Score=45.41  Aligned_cols=79  Identities=11%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL  112 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L  112 (172)
                      +.||+++++...|.+.+. |+.++++.+.+  +.+.|+++...     ..     + .            .  |.-.+.|
T Consensus         2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~--~~~~l~v~~~~-----~~-----~-~------------~--y~~~l~L   53 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEA--NSTVLTIHIVF-----EG-----N-K------------E--FQLDIEL   53 (87)
T ss_pred             CccEeeCCCEEEEEEEEC-cCCccceEEEe--cCCEEEEEEEC-----CC-----C-c------------e--EEEEeec
Confidence            579999999999999999 99999999999  56788887654     10     0 0            2  5566788


Q ss_pred             CCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          113 PEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       113 P~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      -..|+.  +..+-+...+-+.|+|.|+++
T Consensus        54 ~~~I~~--~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488          54 WGVIDV--EKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             cceECh--hHcEEEecCcEEEEEEEeCCC
Confidence            888866  888888899999999999864

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.44  E-value=0.0035  Score=44.40  Aligned_cols=79  Identities=15%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             eeeEEECCCeEEEEEecCCCCCC---CceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKM---EELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~k---edI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      +.+|+++++...|.+.+| +..+   ++++|++  ..+.|.+++...          .+.             .  |.-.
T Consensus         3 ~y~W~Qt~~~V~i~i~~~-~~~~~~~~~v~v~~--~~~~l~v~~~~~----------~~~-------------~--~~~~   54 (92)
T cd06468           3 KYAWDQSDKFVKIYITLK-GVHQLPKENIQVEF--TERSFELKVHDL----------NGK-------------N--YRFT   54 (92)
T ss_pred             eeeeecCCCEEEEEEEcc-CCCcCCcccEEEEe--cCCEEEEEEECC----------CCc-------------E--EEEE
Confidence            579999999999999999 9876   9999999  567899887430          011             1  3333


Q ss_pred             E-ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          110 F-NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       110 f-~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      + .|-..|+.  +..+.++..+-+.|+|.|.++
T Consensus        55 ~~~L~~~I~~--e~s~~~~~~~ki~i~L~K~~~   85 (92)
T cd06468          55 INRLLKKIDP--EKSSFKVKTDRIVITLAKKKE   85 (92)
T ss_pred             ehHhhCccCc--cccEEEEeCCEEEEEEEeCCC
Confidence            4 37777866  999999999999999999965

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.32  E-value=0.0034  Score=44.30  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847           34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP  113 (172)
Q Consensus        34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP  113 (172)
                      .+|+++.+...|.+.+|.|++++|++|++  ..+.|+++...     .        ..              | -.-.|.
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~--~~~~l~v~~~~-----~--------~~--------------~-~~g~L~   50 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF--LPDHISIALKD-----Q--------AP--------------L-LEGKLY   50 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEE--ecCEEEEEeCC-----C--------Ce--------------E-EeCccc
Confidence            36899999999999996599999999999  45678876421     0        00              1 122566


Q ss_pred             CCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          114 EGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       114 ~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                      ..|+.  +.-.-++++| .|.|+|.|+++
T Consensus        51 ~~I~~--d~Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493          51 SSIDH--ESSTWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             Ccccc--cCcEEEEeCCCEEEEEEEECCC
Confidence            77766  8888888777 79999999864

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=96.92  E-value=0.015  Score=42.38  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=59.9

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      ....|..|.+...|.+.||.|+++.|++|.+  ..+.|+|.-.-             ..+      -.|  .        
T Consensus         6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i--~~~~l~V~~~g-------------~~~------l~G--~--------   54 (93)
T cd06494           6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL--GSRDISLAVKG-------------QEV------LKG--K--------   54 (93)
T ss_pred             CCcEEEeEcCEEEEEEECCCCCceeeEEEEE--EcCEEEEEECC-------------EEE------EcC--c--------
Confidence            5689999999999999999999999999999  55678776311             011      234  3        


Q ss_pred             CCCCCcCCCCcEEEEEeCCE-EEEEEeccCCC
Q 039847          112 LPEGVIVKPNCFKASVEDGV-LNVIFTKLKSK  142 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~~nGV-L~V~vPK~~~~  142 (172)
                      |...|+.  +.-.-++++|- |.|+|.|....
T Consensus        55 L~~~I~~--destWtled~k~l~I~L~K~~~~   84 (93)
T cd06494          55 LFDSVVA--DECTWTLEDRKLIRIVLTKSNRD   84 (93)
T ss_pred             ccCccCc--ccCEEEEECCcEEEEEEEeCCCC
Confidence            5566766  88888898875 89999998643

Little is known about the function of the proteins in this subgroup.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=96.46  E-value=0.073  Score=39.61  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=57.1

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .|+++|+++.+...|++++| +  .+|++|.+  ..+.|+++|..     .     ++..               |.-.+
T Consensus         1 ~p~v~WaQr~~~V~ltI~v~-d--~~d~~v~l--~~~~l~f~~~~-----~-----~g~~---------------y~~~l   50 (106)
T cd00237           1 PAKTLWYDRRDYVFIEFCVE-D--SKDVKVDF--EKSKLTFSCLN-----G-----DNVK---------------IYNEI   50 (106)
T ss_pred             CCcceeeECCCEEEEEEEeC-C--CCCcEEEE--ecCEEEEEEEC-----C-----CCcE---------------EEEEE
Confidence            37899999999999999999 8  57999999  45689999843     1     1111               22344


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|=..|+.  ++-+-+...--+.|.|.|.+.
T Consensus        51 ~l~~~I~p--e~Sk~~v~~r~ve~~L~K~~~   79 (106)
T cd00237          51 ELYDRVDP--NDSKHKRTDRSILCCLRKGKE   79 (106)
T ss_pred             EeecccCc--ccCeEEeCCceEEEEEEeCCC
Confidence            55556655  666666666678889999864

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.25  E-value=0.035  Score=48.92  Aligned_cols=81  Identities=12%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .++.||+++++..+|.+.+. |+.++++.|++  ..+.|.|+-..+.          + .            .  |...+
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~--~~~~l~v~~~~~~----------~-~------------~--y~~~~  207 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDF--GEQILSVVIEVPG----------E-D------------A--YHLQP  207 (356)
T ss_pred             ccccceeecCCEEEEEEEec-CCChHHcEEEe--ecCEEEEEEecCC----------C-c------------c--eeecc
Confidence            37899999999999999999 99999999999  5678888865410          0 0            1  44457


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|-..|+.  ++.+-++.---+.|+|.|.+.
T Consensus       208 ~L~~~I~p--~~s~~~v~~~Kiei~l~K~~~  236 (356)
T PLN03088        208 RLFGKIIP--DKCKYEVLSTKIEIRLAKAEP  236 (356)
T ss_pred             cccccccc--cccEEEEecceEEEEEecCCC
Confidence            88888876  888888887899999998864

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=96.09  E-value=0.026  Score=46.30  Aligned_cols=80  Identities=14%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .++.||+++....+|.+..+ |+.++|++|++  ..++|.|..+-+.          +..               |.-..
T Consensus         3 k~r~DwyQt~~~vvIti~~k-~v~~~~v~v~~--s~~~l~~~~~~~~----------g~~---------------~~l~~   54 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFAK-NVPKEDVNVEI--SENTLSIVIQLPS----------GSE---------------YNLQL   54 (196)
T ss_pred             cccceeecCCceEEEEEEec-CCCccceeEEe--ecceEEEEEecCC----------chh---------------hhhhH
Confidence            47899999999999999999 99999999999  4577877765521          111               22233


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLK  140 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~  140 (172)
                      .|-..|..  ++.+-+.----+.|+|+|.+
T Consensus        55 ~L~~~I~p--e~~s~k~~stKVEI~L~K~~   82 (196)
T KOG1309|consen   55 KLYHEIIP--EKSSFKVFSTKVEITLAKAE   82 (196)
T ss_pred             Hhcccccc--cceeeEeeeeeEEEEecccc
Confidence            34444544  65555555556677777753

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=94.90  E-value=0.87  Score=32.33  Aligned_cols=79  Identities=14%  Similarity=0.249  Sum_probs=52.8

Q ss_pred             eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847           34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP  113 (172)
Q Consensus        34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP  113 (172)
                      .||+.+++..+|.+... +....+..|.+....+.|+|+-..     .      + .            .  |...|.|=
T Consensus         1 ~DWyQt~~~Vtitiy~K-~~~~~~~~v~v~~~~~~l~v~~~~-----~------~-~------------~--~~~~~~L~   53 (87)
T cd06490           1 YDWFQTDSEVTIVVYTK-SKGNPADIVIVDDQQRELRVEIIL-----G------D-K------------S--YLLHLDLS   53 (87)
T ss_pred             CCceECCCEEEEEEEEc-ccCCCCccEEEECCCCEEEEEEEC-----C------C-c------------e--EEEeeecc
Confidence            48999999999999988 755445444442255578876543     0      0 0            2  55666777


Q ss_pred             CCCcCCCCc-EEEEEeCCEEEEEEeccCC
Q 039847          114 EGVIVKPNC-FKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       114 ~~vd~~~d~-I~A~~~nGVL~V~vPK~~~  141 (172)
                      ..++.  +. ++....-|-+.|+|.|++.
T Consensus        54 ~~I~~--~~~~~~~~~~~KVEI~L~K~e~   80 (87)
T cd06490          54 NEVQW--PCEVRISTETGKIELVLKKKEP   80 (87)
T ss_pred             ccCCC--CcEEEEcccCceEEEEEEcCCC
Confidence            77755  64 3333347899999999864

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=94.70  E-value=0.56  Score=33.46  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             EEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847           36 WDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP  113 (172)
Q Consensus        36 i~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP  113 (172)
                      |..|.++..|.+.||.|  +++.|++|.+  ..+.|++.-.-             ....     -.|  .        |.
T Consensus         3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i--~~~~l~v~~~g-------------~~~~-----i~G--~--------L~   52 (87)
T cd06492           3 WTQTLSEVELKVPFKVSFRLKGKDVVVDI--QRKHLKVGLKG-------------QPPI-----IDG--E--------LY   52 (87)
T ss_pred             cEeecCEEEEEEECCCCCCccceEEEEEE--ecCEEEEEECC-------------CceE-----EeC--c--------cc
Confidence            67888999999999865  8899999999  55677775321             0111     234  3        55


Q ss_pred             CCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          114 EGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       114 ~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                      ..|+.  |.-.=.+++| .|.|+|-|...
T Consensus        53 ~~V~~--des~Wtled~~~l~i~L~K~~~   79 (87)
T cd06492          53 NEVKV--EESSWLIEDGKVVTVNLEKINK   79 (87)
T ss_pred             Ccccc--cccEEEEeCCCEEEEEEEECCC
Confidence            66766  8888889886 89999999853

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=93.29  E-value=1.8  Score=32.02  Aligned_cols=81  Identities=14%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             ceeeEEECCCeEEEEEecCCC-CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTG-TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~G-v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .+.-|..|.++..|++.||.| .+..|++|.+  ..+.|.|.-..     .     .+...+     -.|  .       
T Consensus         5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i--~~~~l~v~~~~-----~-----~~~~~~-----i~G--~-------   58 (102)
T cd06495           5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL--QSSSIRVSVRD-----G-----GGEKVL-----MEG--E-------   58 (102)
T ss_pred             CceEEEeECCeEEEEEECCCCCccceEEEEEE--EcCEEEEEEec-----C-----CCCceE-----EeC--c-------
Confidence            467899999999999999977 4678999999  56678776532     0     000111     234  3       


Q ss_pred             ECCCCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                       |...|+.  +.-.-++++| .|.|+|-|..+
T Consensus        59 -L~~~V~~--des~Wtled~~~l~I~L~K~~~   87 (102)
T cd06495          59 -FTHKINT--ENSLWSLEPGKCVLLSLSKCSE   87 (102)
T ss_pred             -ccCcccC--ccceEEEeCCCEEEEEEEECCC
Confidence             5666777  8888889996 48999999853

Little is known about the function of the proteins in this subgroup.

>PF14913 DPCD: DPCD protein family

Probab=81.71  E-value=16  Score=30.32  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=60.3

Q ss_pred             cCceeeEEECCCeEEEEE-ecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           30 LNINGEWDDAGDNLMFKA-TLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~a-dLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      .+|-+==.+|..+|..++ .||  +.++--+|+++.+++.++|+-.-                        -  +  |.+
T Consensus        85 ~nP~~~r~dTk~~fqWRIRNLP--YP~dvYsVtvd~~~r~ivvRTtN------------------------K--K--YyK  134 (194)
T PF14913_consen   85 SNPIFVRRDTKTSFQWRIRNLP--YPKDVYSVTVDEDERCIVVRTTN------------------------K--K--YYK  134 (194)
T ss_pred             CCCEEEEEcCccceEEEEccCC--CCccceEEEEcCCCcEEEEECcC------------------------c--c--cee
Confidence            456666688999999988 899  89999999996666667766221                        1  4  667


Q ss_pred             EEECCCC----CcCCCCcEEEEEeCCEEEEEEecc
Q 039847          109 SFNLPEG----VIVKPNCFKASVEDGVLNVIFTKL  139 (172)
Q Consensus       109 ~f~LP~~----vd~~~d~I~A~~~nGVL~V~vPK~  139 (172)
                      +|.+|+-    +..++++++..+.|..|.|+-.|-
T Consensus       135 k~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP  169 (194)
T PF14913_consen  135 KFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKP  169 (194)
T ss_pred             EecCCcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence            7888752    333558899999999999998776

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=80.37  E-value=1.4  Score=38.73  Aligned_cols=82  Identities=13%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      +..+.||.+|.+...|.+.-| -++.|++++-+  .+|+|.|+-+-+.                      |  +..|.-.
T Consensus       175 ~~i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~--e~NTL~I~~q~~~----------------------~--~~~~~~~  227 (368)
T COG5091         175 MEIAYDFSETSDTAIIFIYRP-PVGDEQVSPVL--EGNTLSISYQPRR----------------------L--RLWNDIT  227 (368)
T ss_pred             ceeeeeccccceeEEEEEecC-CCCccccceee--cCCcceeeeeccc----------------------c--chHHHhh
Confidence            456778889988888877777 79999999999  7899999876511                      1  0114445


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLK  140 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~  140 (172)
                      ..|-..|..  +...-+.---++.|+|-|.+
T Consensus       228 ~~Ly~ev~P--~~~s~k~fsK~~e~~l~KV~  256 (368)
T COG5091         228 ISLYKEVYP--DIRSIKSFSKRVEVHLRKVE  256 (368)
T ss_pred             hhhhhhcCc--chhhhhhcchhheehhhhhh
Confidence            566666644  55555554466667666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	3e-07
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	3e-05
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	4e-05

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 1   MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKI 60
            +    D          A          F N   +W +  +  +FKA LP G K EE+K+
Sbjct: 13  FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKV 71

Query: 61  ESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKP 120
           E  EDG +L +S     G+    + +    W   E  S   GK    + F L E    K 
Sbjct: 72  E-VEDGNVLVVS-----GERTKEKEDKNDKWHRVERSS---GKF--VRRFRLLEDA--KV 118

Query: 121 NCFKASVEDGVLNVIFTKLKSKKK 144
              KA +E+GVL V   K + KK 
Sbjct: 119 EEVKAGLENGVLTVTVPKAEVKKP 142

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 35  EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKL-LKLSKVLPEGDNGDGEHEAAVMWVL 93
              +   ++   A LP G   E++ +       L ++  +        +         + 
Sbjct: 60  SIIEGDQHIKVIAWLP-GVNKEDIILN-AVGDTLEIRAKRSPLMITESER-------IIY 110

Query: 94  KECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
            E     +    I ++  LP  V  K     A  E+GVL+VI  K +S  K
Sbjct: 111 SEIPEEEE----IYRTIKLPATV--KEENASAKFENGVLSVILPKAESSIK 155

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 17/110 (15%)

Query: 35  EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
           +  + G  L+  A L  G   E++K   +     L +          + E     +  L 
Sbjct: 28  DMYEEGGYLVVVADLA-GFNKEKIKARVSGQN-ELIIE--------AEREITEPGVKYLT 77

Query: 95  ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
           +          + K   LP  V           E+GVL +      +   
Sbjct: 78  QRPKY------VRKVIRLPYNVAKDAEI-SGKYENGVLTIRIPIAGTSVF 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.96
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.96
4fei_A	102	Heat shock protein-related protein; stress respons	99.94
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.94
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.93
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.92
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.91
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.89
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.88
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.86
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.84
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.84
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.06
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.04
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.9
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.81
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.68
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.53
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.44
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	97.31
3igf_A	374	ALL4481 protein; two-domained protein consisting o	97.21
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.19
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	96.97
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	96.95
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	96.92
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	96.87
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	96.71

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.96  E-value=8e-29  Score=179.58  Aligned_cols=97  Identities=16%  Similarity=0.265  Sum_probs=87.8

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      +.|++||+|++++|+|.++|| |++++||+|++  +++.|+|+|++     ..+.+.++.+|+++|| ++|  +  |.|+
T Consensus         3 ~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~--~~~~L~I~g~~-----~~~~~~~~~~~~~~er-~~g--~--f~r~   69 (100)
T 3gla_A            3 WVPRVDIKEEVNHFVLYADLP-GIDPSQIEVQM--DKGILSIRGER-----KSESSTETERFSRIER-RYG--S--FHRR   69 (100)
T ss_dssp             SCCCEEEEECSSEEEEEEECT-TSCGGGCEEEE--ETTEEEEEEEE-----CCGGGSSGGGEEEECC-CCE--E--EEEE
T ss_pred             ccCcEEEEECCCEEEEEEECC-CCCHHHEEEEE--ECCEEEEEEEE-----cCcCccCCccEEEEee-cce--E--EEEE
Confidence            568999999999999999999 99999999999  67899999999     5555556778999999 888  8  9999


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      |.||.+++.  ++|+|+|+||||+|++||.+.
T Consensus        70 ~~LP~~vd~--~~i~A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           70 FALPDSADA--DGITAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             EECCTTBCT--TSCEEEEETTEEEEEEEBC--
T ss_pred             EECCCCcCh--HHeEEEEeCCEEEEEEecCCC
Confidence            999999988  999999999999999999864

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.96  E-value=7.3e-29  Score=193.35  Aligned_cols=112  Identities=35%  Similarity=0.508  Sum_probs=98.2

Q ss_pred             ccccccCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCee
Q 039847           25 PALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKI  104 (172)
Q Consensus        25 ~~~~~~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~  104 (172)
                      .....+.|++||+|++++|+|.++|| |++++||+|++ .+++.|+|+|++     +.+.+.++.+|+++|| ++|  + 
T Consensus        37 ~~~~~~~p~~di~e~~d~~~v~~dlP-Gv~kedI~V~v-~~~~~L~I~g~~-----~~~~~~~~~~~~~~Er-~~g--~-  105 (151)
T 1gme_A           37 ETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKVEV-EDGNVLVVSGER-----TKEKEDKNDKWHRVER-SSG--K-  105 (151)
T ss_dssp             SHHHHGGGCEEEEECSSEEEEEEECT-TCCGGGEEEEE-ETTTEEEEEECC-----CCCCCCTTCEEEECCC-CCC--C-
T ss_pred             ccccccCCceEEEEcCCEEEEEEECC-CCChHHEEEEE-ecCCEEEEEEEE-----ccccccCCceEEEEeE-ecc--E-
Confidence            33455679999999999999999999 99999999999 457899999999     4444456678999999 888  8 


Q ss_pred             eEEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeec
Q 039847          105 DISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVL  150 (172)
Q Consensus       105 ~F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~  150 (172)
                       |.|+|.||.+++.  ++|+|+|+||||+|++||.+..+++.++|.
T Consensus       106 -F~R~~~LP~~vd~--~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~  148 (151)
T 1gme_A          106 -FVRRFRLLEDAKV--EEVKAGLENGVLTVTVPKAEVKKPEVKAIQ  148 (151)
T ss_dssp             -EEEEEECSSCCCG--GGCEEEEETTEEEEEEECCCCCTTCCCCCC
T ss_pred             -EEEEEECCCCccc--cceEEEEECCEEEEEEEccCcCCCCCeEee
Confidence             9999999999988  999999999999999999988777666664

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.94  E-value=2.9e-27  Score=172.77  Aligned_cols=94  Identities=29%  Similarity=0.404  Sum_probs=85.3

Q ss_pred             ccCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           29 FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        29 ~~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      .+.|++||+|+++.|+|.++|| |++++||+|++  +++.|+|+|++     +.     ..+|+++|| ++|  +  |.|
T Consensus         4 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~--~~~~L~I~g~~-----~~-----~~~~~~~er-~~g--~--f~R   65 (102)
T 4fei_A            4 PWTPAADWRDAGTHLDLLLDVP-GVDAGTLALAE--DGGQLTVSGER-----PG-----TEHLLRSER-PSG--R--FVR   65 (102)
T ss_dssp             ECCCCEEEEEETTEEEEEEECT-TCCGGGCEEEE--ETTEEEEEEEE-----CC-----CSSCSSCCS-EEE--E--EEE
T ss_pred             cccCcEEEEEcCCEEEEEEECC-CCchHhEEEEE--ECCEEEEEEEE-----ec-----CCCEEEEEE-ecc--E--EEE
Confidence            3569999999999999999999 99999999999  67899999999     22     257889999 888  8  999


Q ss_pred             EEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847          109 SFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK  142 (172)
Q Consensus       109 ~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~  142 (172)
                      +|.||.+++.  ++|+|+|+||||+|++||.++.
T Consensus        66 ~~~LP~~vd~--~~i~A~~~~GvL~I~lpK~~~~   97 (102)
T 4fei_A           66 ELAFPEPVRP--ASGVASLAGGVLTVRFEKLRPT   97 (102)
T ss_dssp             EEECSSCBCT--TCCEEEEETTEEEEEEEBSSCC
T ss_pred             EEECCCCcch--hHcEEEEECCEEEEEEEccCcc
Confidence            9999999988  9999999999999999998754

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.94  E-value=1.5e-26  Score=181.34  Aligned_cols=105  Identities=21%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .+++||+|++++|+|.++|| |+++|||+|++  +++.|+|+|++     +.+.+.++.+|+++||-.+|  +  |.|+|
T Consensus        56 ~~pvdi~e~~~~~~v~~dlP-G~~~edi~V~~--~~~~L~I~g~~-----~~~~~~~~~~~~~~Er~~~g--~--f~R~~  123 (161)
T 4eld_A           56 FMPISIIEGDQHIKVIAWLP-GVNKEDIILNA--VGDTLEIRAKR-----SPLMITESERIIYSEIPEEE--E--IYRTI  123 (161)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TCCGGGEEEEE--ETTEEEEEEEC-----CCCCCCSSCEEEEECSCCCC--E--EEEEE
T ss_pred             ccceeEEEeCCEEEEEEECC-CCChHhEEEEE--ECCEEEEEEEE-----cccccCCCceEEEEEeeccc--c--EEEEE
Confidence            34599999999999999999 99999999999  67899999999     44333445679999982356  7  99999


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      .||.+|+.  ++|+|+|+||||+|++||.+..+++.+.|
T Consensus       124 ~LP~~vd~--~~i~A~~~nGvL~I~lpK~~~~~~r~I~I  160 (161)
T 4eld_A          124 KLPATVKE--ENASAKFENGVLSVILPKAESSIKKGINI  160 (161)
T ss_dssp             ECSSCBCG--GGCEEEEETTEEEEEEEBCGGGSCCCCCC
T ss_pred             ECCCCccc--ccEEEEEECCEEEEEEEcCCCCCCcEeec
Confidence            99999988  99999999999999999998777654444

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.93  E-value=7.2e-26  Score=170.23  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=84.5

Q ss_pred             ccCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCC-CEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           29 FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDG-KLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        29 ~~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~-~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      ...|++||+|++++|+|.++|| |++++||+|++  ++ +.|+|+|++     +.+.   +.+|+++|| ++   +  |.
T Consensus        22 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~V~v--~~~~~L~I~g~~-----~~~~---~~~~~~~Er-~~---~--f~   84 (123)
T 3aab_A           22 LVYPPVDMYEEGGYLVVVADLA-GFNKEKIKARV--SGQNELIIEAER-----EITE---PGVKYLTQR-PK---Y--VR   84 (123)
T ss_dssp             HHCSCEEEEEETTEEEEEEECC-SCCGGGCEEEE--ETTTEEEEEEEC-----CCCC---CSCEEEECS-CS---E--EE
T ss_pred             cCCCcEEEEEcCCEEEEEEECC-CCCHHHEEEEE--eCCCEEEEEEEE-----eccC---CCeEEEEEE-eE---E--EE
Confidence            3458999999999999999999 99999999999  55 899999998     3322   568999999 33   3  99


Q ss_pred             EEEECCCCCcCCCCcE-EEEEeCCEEEEEEeccCCCC
Q 039847          108 KSFNLPEGVIVKPNCF-KASVEDGVLNVIFTKLKSKK  143 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I-~A~~~nGVL~V~vPK~~~~k  143 (172)
                      |+|.||.+++.  ++| +|+|+||||+|++||.+..+
T Consensus        85 R~~~LP~~vd~--~~i~~A~~~~GvL~I~lPK~~~~~  119 (123)
T 3aab_A           85 KVIRLPYNVAK--DAEISGKYENGVLTIRIPIAGTSV  119 (123)
T ss_dssp             EEEECSSEECT--TCCCEEEEETTEEEEEEEGGGEEC
T ss_pred             EEEECCCCcCc--chhCeeEEcCCEEEEEEEcCCCCc
Confidence            99999999988  999 99999999999999997654

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.92  E-value=6.1e-25  Score=160.60  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL  112 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L  112 (172)
                      .+||+|++++|+|.++|| ||+++||+|++  +++.|+|+|++..     +.  ++..|+++        .  |+|+|.|
T Consensus         3 ~vdi~e~~~~~~v~~dlP-G~~~edI~V~v--~~~~L~I~g~~~~-----~~--~~~~~~~~--------e--F~R~~~L   62 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVK-HFSPEEISVKV--VGDHVEVHARHEE-----RP--DEHGFIAR--------E--FHRRYRL   62 (101)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSCGGGEEEEE--ETTEEEEEEEEEE-----CS--STTCCEEE--------E--EEEEEEC
T ss_pred             cEEEEEeCCEEEEEEECC-CCcHHHeEEEE--ECCEEEEEEEEec-----cc--CCCCEEEE--------E--EEEEEEC
Confidence            489999999999999999 99999999999  5789999999932     11  22345432        4  9999999


Q ss_pred             CCCCcCCCCcEEEEE-eCCEEEEEEeccCCCCcceeee
Q 039847          113 PEGVIVKPNCFKASV-EDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       113 P~~vd~~~d~I~A~~-~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      |.+++.  ++|+|+| +||||+|++||.+..+++.++|
T Consensus        63 P~~vd~--~~i~A~~s~nGvL~I~lPK~~~~~~~~~~i   98 (101)
T 2wj5_A           63 PPGVDP--AAVTSALSPEGVLSIQATPASAQASLPSPP   98 (101)
T ss_dssp             CTTBCT--TCCEEEECTTSEEEEEECBCCCCCSSCC--
T ss_pred             CCCcCh--hHCEEEECCCCEEEEEEECCCcCCCCCCcc
Confidence            999988  9999999 8999999999999988887776

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.91  E-value=6.3e-24  Score=156.58  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL  112 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L  112 (172)
                      -.||+|++++|+|.++|| ||+++||+|++  +++.|+|+|++.     ...  ....|++  |      .  |.|+|.|
T Consensus         4 ~~~i~e~~~~~~v~~dlP-G~~~edi~V~v--~~~~L~I~g~~~-----~~~--~~~~~~~--~------e--F~R~~~L   63 (106)
T 3l1e_A            4 ISEVRSDRDKFVIFLDVK-HFSPEDLTVKV--QEDFVEIHGKHN-----ERQ--DDHGYIS--R------E--FHRRYRL   63 (106)
T ss_dssp             SEEEEECSSEEEEEEECT-TSCGGGEEEEE--ETTEEEEEEEEE-----EEE--TTTEEEE--E------E--EEEEEEC
T ss_pred             ceEEEEcCCEEEEEEECC-CCChHHEEEEE--ECCEEEEEEEEc-----ccc--CCCCEEE--E------E--EEEEEEC
Confidence            489999999999999999 99999999999  678999999982     111  1234542  2      5  9999999


Q ss_pred             CCCCcCCCCcEEEEE-eCCEEEEEEeccCCCC---cceeeec
Q 039847          113 PEGVIVKPNCFKASV-EDGVLNVIFTKLKSKK---KIMSKVL  150 (172)
Q Consensus       113 P~~vd~~~d~I~A~~-~nGVL~V~vPK~~~~k---~~~~~I~  150 (172)
                      |.+++.  ++|+|+| +||||+|++||.++..   ++.++|+
T Consensus        64 P~~vd~--~~i~A~~s~~GvL~I~~PK~~~~~~~~~~~r~I~  103 (106)
T 3l1e_A           64 PSNVDQ--SALSCSLSADGMLTFSGPKIPSGVDAGHSERAIP  103 (106)
T ss_dssp             CTTBCT--TSCEEEECTTSEEEEEEEBCCCCTTTTSSSCCCC
T ss_pred             CCCcCh--hHcEEEECCCCEEEEEEEccCcccccCCCCeEee
Confidence            999988  9999999 8999999999998752   3555554

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.89  E-value=4.7e-23  Score=146.26  Aligned_cols=83  Identities=17%  Similarity=0.227  Sum_probs=67.7

Q ss_pred             EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847           36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG  115 (172)
Q Consensus        36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~  115 (172)
                      +.|++++|+|.++|| ||+++||+|++  +++.|+|+|++     +.+..+  ..|      .+|  +  |.|+|.||++
T Consensus         2 ~~E~~~~~~v~~dlP-G~~~edi~V~v--~~~~L~I~g~~-----~~~~~~--~~~------~~~--~--F~R~~~LP~~   61 (85)
T 3q9p_A            2 GSHTADRWRVSLDVN-HFAPDELTVKT--KDGVVEITGKH-----AARQDE--HGY------ISR--C--FTRKYTLPPG   61 (85)
T ss_dssp             -CCCCCEEEEEEECT-TTCCSEEEEEE--ETTEEEEEEEE-----C---------C------CCE--E--EEEEEECCTT
T ss_pred             ccCcCCEEEEEEECC-CCChHHEEEEE--ECCEEEEEEEE-----ccccCC--CCE------EEE--E--EEEEEECCCC
Confidence            358999999999999 99999999999  67899999999     222111  112      334  6  9999999999


Q ss_pred             CcCCCCcEEEEEe-CCEEEEEEeccC
Q 039847          116 VIVKPNCFKASVE-DGVLNVIFTKLK  140 (172)
Q Consensus       116 vd~~~d~I~A~~~-nGVL~V~vPK~~  140 (172)
                      |+.  ++|+|+|. ||||+|++||.+
T Consensus        62 vd~--~~i~A~~~~~GvL~I~lPK~k   85 (85)
T 3q9p_A           62 VDP--TQVSSSLSPEGTLTVEAPMPK   85 (85)
T ss_dssp             CCG--GGCEEEECTTSEEEEEEECCC
T ss_pred             cCh--HHcEEEECCCCEEEEEEEcCC
Confidence            988  99999998 999999999963

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.88  E-value=1.4e-22  Score=145.01  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847           37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV  116 (172)
Q Consensus        37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v  116 (172)
                      .++++.|+|.++|| ||+++||+|++  +++.|+|+|++.     .+  .++..|+++        .  |+|+|.||.+|
T Consensus         2 k~~~~~~~v~~dlP-G~~~edi~V~v--~~~~L~I~g~~~-----~~--~~~~~~~~~--------e--f~R~~~LP~~v   61 (90)
T 2y1y_A            2 AMEKDRFSVNLDVK-HFSPEELKVKV--LGDVIEVHGKHE-----ER--QDEHGFISR--------E--FHRKYRIPADV   61 (90)
T ss_dssp             ----CCEEEEEECT-TSCGGGEEEEE--ETTEEEEEEEEE-----EE--ECSSSEEEE--------E--EEEEEECCTTB
T ss_pred             CcCCCEEEEEEECC-CCcHHHeEEEE--ECCEEEEEEEEe-----cc--cCCCCEEEE--------E--EEEEEECCCCc
Confidence            36889999999999 99999999999  578999999982     21  123456532        4  99999999999


Q ss_pred             cCCCCcEEEEE-eCCEEEEEEeccCCCCcc
Q 039847          117 IVKPNCFKASV-EDGVLNVIFTKLKSKKKI  145 (172)
Q Consensus       117 d~~~d~I~A~~-~nGVL~V~vPK~~~~k~~  145 (172)
                      +.  ++|+|+| +||||+|++||.+.++|+
T Consensus        62 d~--~~i~A~~~~~GvL~I~~pK~~~~~p~   89 (90)
T 2y1y_A           62 DP--LTITSSMSSDGVLTVNGPRKQVSGPE   89 (90)
T ss_dssp             CG--GGCEEEECTTSEEEEEECBC------
T ss_pred             Ch--hHcEEEECCCCEEEEEEEcCCCCCCC
Confidence            88  9999999 899999999999887765

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.86  E-value=6.5e-22  Score=158.02  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847           33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL  112 (172)
Q Consensus        33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L  112 (172)
                      .+||+|+++.|+|.++|| ||++|||+|++  +++.|+|+|++     +.+.  ++..|++  |      .  |+|+|.|
T Consensus        65 ~~dv~e~~d~~~v~~dlP-G~~~edI~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~--r------e--F~R~~~L  124 (175)
T 2klr_A           65 LSEMRLEKDRFSVNLDVK-HFSPEELKVKV--LGDVIEVHGKH-----EERQ--DEHGFIS--R------E--FHRKYRI  124 (175)
T ss_dssp             ----CCCCSEEEEEECCS-SCCGGGEEEEE--ETTEEEEEEEE-----EEEE--ETTEEEE--E------E--EEEEEEC
T ss_pred             ceEEEEcCCeEEEEEECC-CCChHHEEEEE--ECCEEEEEEEE-----cccc--cCCceEE--E------E--EEEEEEC
Confidence            479999999999999999 99999999999  57899999998     2221  2334543  2      4  9999999


Q ss_pred             CCCCcCCCCcEEEEE-eCCEEEEEEeccCCCC
Q 039847          113 PEGVIVKPNCFKASV-EDGVLNVIFTKLKSKK  143 (172)
Q Consensus       113 P~~vd~~~d~I~A~~-~nGVL~V~vPK~~~~k  143 (172)
                      |++|+.  ++|+|+| +||||+|++||.+..+
T Consensus       125 P~~Vd~--~~i~A~~s~dGvL~I~lPK~~~~~  154 (175)
T 2klr_A          125 PADVDP--LTITSSLSSDGVLTVNGPRKQVSG  154 (175)
T ss_dssp             TTTCCT--TTCEEEECTTSCEEEEEECC----
T ss_pred             CCCcCh--hHeEEEEcCCCEEEEEEECCCCCC
Confidence            999988  9999999 8999999999987644

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.84  E-value=5.3e-21  Score=165.00  Aligned_cols=91  Identities=20%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             cCceeeEEECCC----eEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeee
Q 039847           30 LNINGEWDDAGD----NLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKID  105 (172)
Q Consensus        30 ~~p~vDi~Et~d----~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~  105 (172)
                      +.|++|++|+++    +|+|.++|| ||+||||+|++  +++.|+|+|++     +.+.+  .      +| .+|  +  
T Consensus        97 ~~p~vDi~E~~~dgk~~~~v~~dlP-G~~~edI~V~v--~~~~L~I~ge~-----~~~~e--~------~r-~~g--~--  155 (314)
T 2bol_A           97 LDFLKDAYEVGKDGRLHFKVYFNVK-NFKAEEITIKA--DKNKLVVRAQK-----SVACG--D------AA-MSE--S--  155 (314)
T ss_dssp             TGGGGGCEEECTTSSEEEEEEEECT-TCCTTTEEEEE--ETTEEEEEECC-----BSSTT--C------CC-BCC--C--
T ss_pred             CCCccceEEcCCCCceEEEEEEECC-CCchHHeEEEE--ECCEEEEEEEE-----eccCC--C------CE-EEE--E--
Confidence            568999999999    999999999 99999999999  67899999998     22221  1      15 677  8  


Q ss_pred             EEEEEECCCCCcCCCCcEEEEEe-CCEEEEEEeccCCCC
Q 039847          106 ISKSFNLPEGVIVKPNCFKASVE-DGVLNVIFTKLKSKK  143 (172)
Q Consensus       106 F~R~f~LP~~vd~~~d~I~A~~~-nGVL~V~vPK~~~~k  143 (172)
                      |.|+|.||++|+.  ++|+|+|+ ||||+|++||.++..
T Consensus       156 F~R~~~LP~~Vd~--e~i~A~~~~nGVL~I~lPK~~~~~  192 (314)
T 2bol_A          156 VGRSIPLPPSVDR--NHIQATITTDDVLVIEAPVNEPNY  192 (314)
T ss_dssp             EEEEEECCTTBCG--GGCEEEECSSSEEEEEEEBSSCCT
T ss_pred             EEEEEECCCCccc--cccEEEEeCCCEEEEEEeccCccc
Confidence            9999999999988  99999999 999999999997654

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.84  E-value=4.2e-21  Score=165.61  Aligned_cols=90  Identities=20%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             ceeeEEECC---CeEEEEEec-CCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           32 INGEWDDAG---DNLMFKATL-PTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        32 p~vDi~Et~---d~~vv~adL-P~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      ..+++.+++   +.|.|.|+| | |++||||+|++  +++.|+|+|++     +.+++    .|+++|| ++|  +  |+
T Consensus       221 ~~~~i~e~~~~~~~~~v~~~ldP-G~~~edi~V~v--~~~~LtI~ge~-----~~~~~----~~~~~Er-~~g--~--F~  283 (314)
T 2bol_A          221 EGLEIVTAEDGSKKIHLELKVDP-HFAPKDVKVWA--KGNKVYVHGVT-----GKEEK----TENASHS-EHR--E--FY  283 (314)
T ss_dssp             CEEEEEECTTSCEEEEEEEECCT-TCCGGGEEEEE--SSSEEEEEEEE-----C-----------------CE--E--EE
T ss_pred             CCCcEEEecCCCcEEEEEEEcCC-CCChHHeEEEE--ECCEEEEEEEE-----eccCC----ceEEEEE-eee--E--EE
Confidence            447777665   589999999 9 99999999999  78899999999     33221    5789999 899  8  99


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLK  140 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~  140 (172)
                      |+|.||++|+.  ++|+|+|+||||+|++||.+
T Consensus       284 R~~~LP~~vd~--~~i~A~~~dGvL~i~~Pk~~  314 (314)
T 2bol_A          284 KAFVTPEVVDA--SKTQAEIVDGLMVVEAPLFK  314 (314)
T ss_dssp             EEEECSSEECG--GGCEEEEETTEEEEEEEEEC
T ss_pred             EEEECCCCcCh--HHeEEEEeCCEEEEEEecCC
Confidence            99999999988  99999999999999999963

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.06  E-value=1.1e-09  Score=80.13  Aligned_cols=82  Identities=12%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      ..+++||+++.+.+.|.+.+| |+++++++|++  ..+.|+|++..     ..     +           .  .  |...
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~--~~~~l~v~~~~-----~~-----~-----------~--~--y~~~   59 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIK-NVQKNDVNVEF--SEKELSALVKL-----PS-----G-----------E--D--YNLK   59 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCC-SCCGGGEEEEC--SSSCEEEEEEC-----TT-----S-----------S--E--EEEE
T ss_pred             CCCCccEEeCCCEEEEEEEeC-CCCHHHCEEEE--EcCEEEEEEEe-----CC-----C-----------c--E--EEEE
Confidence            347899999999999999999 99999999999  66789999875     10     0           1  3  7788


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      +.|+..|+.  +..++++.+|.|.|+|+|.+.
T Consensus        60 ~~L~~~I~~--e~s~~~~~~~~l~i~L~K~~~   89 (114)
T 1rl1_A           60 LELLHPIIP--EQSTFKVLSTKIEIKLKKPEA   89 (114)
T ss_dssp             ECBSSCCCG--GGEEEEECSSSEEEEEECSSC
T ss_pred             eeCCCcCCc--cccEEEEECCEEEEEEEcCCC
Confidence            999999987  999999999999999999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.04  E-value=1e-09  Score=77.02  Aligned_cols=81  Identities=11%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .++++|+++.+...|.+.+| |+.++++.|++  ..+.|+|++..     ..     +           .  .  |...+
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~--~~~~l~v~~~~-----~~-----~-----------~--~--y~~~~   53 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAK-GIPKQNVNIDF--GEQILSVVIEV-----PG-----E-----------D--A--YYLQP   53 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECC-SCCGGGEEEEE--CSSBEEEEECC-----TT-----S-----------C--C--EEECC
T ss_pred             CccccEEeCCCEEEEEEEEC-CCChHHeEEEE--ECCEEEEEEEc-----CC-----C-----------c--E--EEEee
Confidence            47899999999999999999 99999999999  56789999865     10     0           1  3  77788


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|+..|+.  ++.++++.+|.|.|+|+|.+.
T Consensus        54 ~L~~~I~~--~~s~~~~~~~~l~i~L~K~~~   82 (92)
T 2xcm_C           54 RLFGKIIP--DKCKYEVLSTKIEICLAKADI   82 (92)
T ss_dssp             BBSSCBCG--GGCEEEECSSCEEEEEEBSSS
T ss_pred             EcCCccCc--hhEEEEEECCEEEEEEEcCCC
Confidence            99999977  999999999999999999864

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.90  E-value=2.6e-05  Score=59.71  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             CceeeEEECCCeEEEEEecCCCCC--CCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTK--MEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~--kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      +|...+..+++..+|.+.+| ..+  ..++++.|  ++..+.....                            .  |.-
T Consensus         3 TP~F~itQd~e~viV~Ik~P-~~~~~~sdiei~v--~~~~F~F~~~----------------------------P--YyL   49 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIII--QENMIIFHLS----------------------------P--YYL   49 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECC-SSCCCSSSCCCEE--CSSSEEECSS----------------------------S--SCE
T ss_pred             CceEEEEECCCEEEEEEEcC-ccccCccccEEEE--eCCEEEEecC----------------------------C--eEE
Confidence            58899999999999999999 998  89999999  6766643311                            2  556


Q ss_pred             EEECCCCC-cCCCCcEEEEE--eCCEEEEEEeccCC
Q 039847          109 SFNLPEGV-IVKPNCFKASV--EDGVLNVIFTKLKS  141 (172)
Q Consensus       109 ~f~LP~~v-d~~~d~I~A~~--~nGVL~V~vPK~~~  141 (172)
                      ++.||..| +.  +..+|+|  +.|.|+|+|||...
T Consensus        50 RL~LP~~V~e~--~~~kA~YD~d~~~~~VtLpK~~~   83 (134)
T 2k8q_A           50 RLRFPHELIDD--ERSTAQYDSKDECINVKVAKLNK   83 (134)
T ss_dssp             EECCSSCEECC--SSCEEEEETTTTEEEEEEEESST
T ss_pred             EecCCCeeecC--CCcceeEeccCCEEEEEEeCCCC
Confidence            79999998 55  8899999  48999999999854

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00029  Score=52.50  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             cccCceeeEEECCCeEEEEEecCCCCC--CCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeee
Q 039847           28 EFLNINGEWDDAGDNLMFKATLPTGTK--MEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKID  105 (172)
Q Consensus        28 ~~~~p~vDi~Et~d~~vv~adLP~Gv~--kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~  105 (172)
                      ...+|...+..+++..+|.+-+| -++  ..++++.+  +|+.+.....                            .  
T Consensus        14 ~~iTP~F~itQDdefv~I~I~~p-~ir~~a~~~ei~v--d~~~F~F~~~----------------------------P--   60 (115)
T 3eud_A           14 KMITPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIII--QENMIIFHLS----------------------------P--   60 (115)
T ss_dssp             CCBCCCEEEEECSSEEEEEEECC-SCCCCSSSCEEEE--ETTEEEEEET----------------------------T--
T ss_pred             CEeCCcEEEEECCCEEEEEEEcC-ceecccCccEEEE--eCCEEEEecC----------------------------C--
Confidence            34568999999999999999999 876  77999999  6776654422                            2  


Q ss_pred             EEEEEECCCCCcCCCCcEEEEE--eCCEEEEEEeccCCC
Q 039847          106 ISKSFNLPEGVIVKPNCFKASV--EDGVLNVIFTKLKSK  142 (172)
Q Consensus       106 F~R~f~LP~~vd~~~d~I~A~~--~nGVL~V~vPK~~~~  142 (172)
                      |.-++.||..+- +.+.-+|+|  ++|.++|++||..+.
T Consensus        61 YyLRL~lP~~vv-ed~~~~A~YD~d~g~~~v~lpK~~~G   98 (115)
T 3eud_A           61 YYLRLRFPHELI-DDERSTAQYDSKDECINVKVAKLNKN   98 (115)
T ss_dssp             EEEEEECSSCEE-CSTTCEEEEETTTTEEEEEEEESSTT
T ss_pred             eEEEEecCccee-cCCCcceEEeCCCcEEEEEEcCCcCC
Confidence            556799999884 336789999  489999999999653

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=0.00083  Score=49.91  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             CceeeEEECCCeEEEEEecCCCC---CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGT---KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv---~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      .++++|+++.+...|.+.+| |+   .++++.|++  ..+.|.++....     .     +.             .  |.
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~-~~~~~~~~~v~V~~--~~~~l~v~~~~~-----~-----~~-------------~--y~   71 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLT-GVHQVPTENVQVHF--TERSFDLLVKNL-----N-----GK-------------S--YS   71 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECT-TTTTSCTTSEEEEE--CSSEEEEEECSC-----S-----SS-------------C--EE
T ss_pred             ccEEEEEcCCCEEEEEEEeC-CCCcCCccccEEEE--EcCEEEEEEEcC-----C-----CC-------------c--EE
Confidence            36899999999999999999 99   899999999  667899987530     0     10             2  55


Q ss_pred             EEEE-CCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          108 KSFN-LPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       108 R~f~-LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      -.+. |-..|+.  ++-+.++..+-+.|+|-|.+.
T Consensus        72 ~~~~~L~~~I~~--e~S~~~v~~~kVei~L~K~~~  104 (127)
T 1x5m_A           72 MIVNNLLKPISV--EGSSKKVKTDTVLILCRKKVE  104 (127)
T ss_dssp             EEEECBSSCCCT--TTCEEEEETTEEEEEEECSSS
T ss_pred             EEhHHhcCccCc--ccCEEEEeCCEEEEEEEECCC
Confidence            5674 8888877  888999999999999999874

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.53  E-value=0.00085  Score=50.84  Aligned_cols=93  Identities=9%  Similarity=0.043  Sum_probs=68.9

Q ss_pred             cCceeeEEEC-CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCC-CeeeEE
Q 039847           30 LNINGEWDDA-GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGD-GKIDIS  107 (172)
Q Consensus        30 ~~p~vDi~Et-~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~-~~~~F~  107 (172)
                      ..++.||+++ .+...|.+.++ |+.++++.|++  ..+.|+++...     .....   -..|-    .+|. ..  |.
T Consensus        18 ~~~r~~W~Qt~~~~V~vtI~~k-~v~~~~v~V~f--~~~~l~v~~~~-----~~~~~---l~~~~----a~g~~~~--y~   80 (134)
T 1wh0_A           18 AFVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLF--REQDFTLIFQT-----RDGNF---LRLHP----GCGPHTT--FR   80 (134)
T ss_dssp             SCCCEEEEEETTTEEEEEEECC-SBCTTSCEEEE--CSSEEEEEECB-----CCHHH---HHHST----TCCTTSC--EE
T ss_pred             cCCCeEEEcCCCCEEEEEEEeC-CCCcccCEEEE--ECCEEEEEEEc-----CCCcc---ccccc----ccCccee--EE
Confidence            4588999999 99999999999 99999999999  66789998764     11000   00000    0010 02  66


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      -.+.|-..|+.  ++-+.++..+-+.|+|-|++.
T Consensus        81 ~~~~L~~~I~p--e~S~~~v~~~kIeI~L~K~e~  112 (134)
T 1wh0_A           81 WQVKLRNLIEP--EQCTFCFTASRIDICLRKRQS  112 (134)
T ss_dssp             EEEEBSSCEEE--EEEEEEECSSEEEEEEEESSS
T ss_pred             EeccccccCCc--hhCEEEEeCCEEEEEEEECCC
Confidence            67789888877  888999999999999999864

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.44  E-value=0.0031  Score=46.55  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             cCceeeEEECCCeEEEEEecCCCC-CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGT-KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv-~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      ..|++.|.++.+...|++.||.|+ +++|+.|.+  ..+.|.++...     .     .+..               +.-
T Consensus        18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i--~~~~l~v~~~~-----~-----~~~~---------------~~~   70 (124)
T 1wgv_A           18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVAL--SSSSIRVAMLE-----E-----NGER---------------VLM   70 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEE--CSSEEEEEEEC-----S-----SSEE---------------EEE
T ss_pred             cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEE--EcCEEEEEEEc-----c-----CCCc---------------eEE
Confidence            347899999999999999999777 899999999  67789988653     0     0111               223


Q ss_pred             EEECCCCCcCCCCcEEEEEeCCE-EEEEEeccCC
Q 039847          109 SFNLPEGVIVKPNCFKASVEDGV-LNVIFTKLKS  141 (172)
Q Consensus       109 ~f~LP~~vd~~~d~I~A~~~nGV-L~V~vPK~~~  141 (172)
                      ...|...|+.  +.-..++++|- |.|+|-|.+.
T Consensus        71 ~~~L~~~I~~--e~S~w~i~~~k~v~i~L~K~~~  102 (124)
T 1wgv_A           71 EGKLTHKINT--ESSLWSLEPGKCVLVNLSKVGE  102 (124)
T ss_dssp             EEEBSSCBCT--TTCEEEECTTSEEEEEECBSSS
T ss_pred             cccccCcCCC--cCCEEEEeCCCEEEEEEEECCC
Confidence            4568888877  99999999885 9999999853

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=97.31  E-value=0.0018  Score=48.00  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      |+++|+++.+...|++.+| +.  +++.|.+  ..+.|++++..     ..    .+.             .  |.-.+.
T Consensus         4 ~~~~W~Qt~~~V~ltI~~~-~~--~~~~V~~--~~~~l~~~~~~-----~~----~~~-------------~--y~~~l~   54 (125)
T 1ejf_A            4 ASAKWYDRRDYVFIEFCVE-DS--KDVNVNF--EKSKLTFSCLG-----GS----DNF-------------K--HLNEID   54 (125)
T ss_dssp             CCEEEEECSSEEEEEECCT-TE--EEEEEEE--ETTEEEEEEEE-----TT----TTE-------------E--EEEEEE
T ss_pred             CceeEEeCCCEEEEEEEec-CC--CceEEEE--ECCEEEEEEEe-----CC----CCc-------------e--EEEEEE
Confidence            3899999999999999999 96  6999999  56789998764     10    010             2  556778


Q ss_pred             CCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          112 LPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      |-..|+.  ++-+.++.+.-+.|+|.|+++
T Consensus        55 L~~~I~~--e~S~~~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A           55 LFHCIDP--NDSKHKRTDRSILCCLRKGES   82 (125)
T ss_dssp             BSSCEEE--EEEEEEECSSCEEEEEEESST
T ss_pred             ccceecc--ccCEEEECCCEEEEEEEECCC
Confidence            8888877  999999999999999999863

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=97.21  E-value=0.0012  Score=57.52  Aligned_cols=73  Identities=18%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      ..++.+...  .|.+++.|| |++|++|++.-  .|.-|+|+.                          |  .  |.|.+
T Consensus       297 ~~~~~i~~~--~~~~~l~lP-~~~~~~~~l~~--~gdeL~v~~--------------------------g--~--~rR~i  341 (374)
T 3igf_A          297 PKPITIDTH--NRQVRLFLP-GFDKKQVKLTQ--YGPEVTVEA--------------------------G--D--QRRNI  341 (374)
T ss_dssp             CCSEEEETT--TTEEEEECT-TCCGGGCEEEE--ETTEEEEEE--------------------------T--T--EEEEE
T ss_pred             CCCEEEEec--cEEEEEECC-CCCHHHeEEEE--ECCeEEEEE--------------------------C--C--Eeecc
Confidence            345666554  899999999 99999999977  566777763                          3  4  99999


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKL  139 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~  139 (172)
                      .||....- -.-..|+|+||.|+|++-..
T Consensus       342 ~LP~~L~~-~~v~~A~~~~~~L~i~~~~~  369 (374)
T 3igf_A          342 FLPPALSG-RPITGAKFQNNYLIISFLEH  369 (374)
T ss_dssp             ECCTTTTT-CCEEEEEEETTEEEEEECCC
T ss_pred             cCCHHHcC-CCccccEEECCEEEEEEehh
Confidence            99986542 24589999999999997543

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.19  E-value=0.0029  Score=46.69  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             cCceeeEEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      ..+++.|.++.+...|++.||.|  ++++|+.|.+  ..+.|.+...-      .       .+           -  | 
T Consensus        15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i--~~~~l~v~~kg------~-------~~-----------~--~-   65 (121)
T 3qor_A           15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDI--QRRHLRVGLKG------Q-------PA-----------I--I-   65 (121)
T ss_dssp             BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEE--ETTEEEEEETT------S-------CC-----------S--E-
T ss_pred             cCCCEEEEEccceEEEEEECCCCCcccccceEEEE--EcCEEEEEEcC------c-------ce-----------E--E-
Confidence            34789999999999999999955  7999999999  45678876431      0       00           1  2 


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                       ...|...|+.  +.-..++++| .|.|+|-|...
T Consensus        66 -~g~L~~~I~~--deS~w~i~~~~~i~i~L~K~~~   97 (121)
T 3qor_A           66 -DGELYNEVKV--EESSWLIADGAVVTVHLEKINK   97 (121)
T ss_dssp             -EEEBSSCBCG--GGCEEEEETTTEEEEEEEBSSS
T ss_pred             -eccccccccc--cccEEEEcCCCEEEEEEEECCC
Confidence             3357777877  8899999998 99999999854

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=96.97  E-value=0.0057  Score=45.58  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      .|++.|+++.+...|.+.||.|++++++.|.+  ..+.|.++..-             ..+              |  ..
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i--~~~~l~v~~~g-------------~~~--------------~--~~   52 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRM--VGKKICVKNQG-------------EIV--------------I--DG   52 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEE--ETTEEEEEETT-------------EEE--------------E--EE
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEE--ECCEEEEEECC-------------Eee--------------E--cc
Confidence            47899999999999999996589999999999  56788887521             011              1  23


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|...|+.  +.-..++++|-|.|+|-|.+.
T Consensus        53 ~L~~~I~~--e~S~w~i~~~kv~i~L~K~~~   81 (131)
T 2o30_A           53 ELLHEVDV--SSLWWVINGDVVDVNVTKKRN   81 (131)
T ss_dssp             EBSSCEEE--EEEEEEEETTEEEEEEEESSC
T ss_pred             cccccccc--ccCEEEEeCCEEEEEEEECCC
Confidence            56677877  889999999999999999843

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=96.95  E-value=0.01  Score=45.81  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      ..+.+.|.++.+...|++.||.|++++|+.|.+  ..+.|+++..-             ..+              |  .
T Consensus        12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i--~~~~L~v~~kg-------------~~~--------------l--~   60 (157)
T 2rh0_A           12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGL--QSRHVALAVGG-------------REI--------------L--K   60 (157)
T ss_dssp             ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEE--CSSEEEEEETT-------------EEE--------------E--E
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccceEEEE--ecCEEEEEECC-------------EEE--------------E--e
Confidence            347899999999999999998789999999999  66788887421             011              1  2


Q ss_pred             EECCCCCcCCCCcEEEEEeCCE-EEEEEeccCC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGV-LNVIFTKLKS  141 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGV-L~V~vPK~~~  141 (172)
                      ..|...|+.  +.-..+++++- |.|+|-|...
T Consensus        61 g~L~~~I~~--eeS~w~i~~~k~v~I~L~K~~~   91 (157)
T 2rh0_A           61 GKLFDSTIA--DEGTWTLEDRKMVRIVLTKTKR   91 (157)
T ss_dssp             EEBSSCBCG--GGCEEEEECCCEEEEEEEBSSC
T ss_pred             eccccccCc--cccEEEEcCCcEEEEEEEEcCC
Confidence            457777877  99999999885 9999999864

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=96.92  E-value=0.0039  Score=47.90  Aligned_cols=78  Identities=14%  Similarity=0.285  Sum_probs=62.1

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeC-CCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTED-GKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d-~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      .|+++|+++.+...|++.+| ++  ++++|++  . .+.|++++..     .     .+.             .  |.-.
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~-~~--~~v~V~~--~~~~~l~~~~~~-----~-----~~~-------------~--y~~~   53 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALP-DA--KDISVKC--EPQGLFSFSALG-----A-----QGE-------------R--FEFS   53 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCS-SE--EEEEECC--CTTEEEEEEEET-----T-----TTE-------------E--EEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeC-CC--CceEEEE--ecCCEEEEEEEc-----C-----CCc-------------e--EEEE
Confidence            58899999999999999999 98  4788888  5 5689998862     0     010             2  5567


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      +.|=..|+.  + -+.++...-+.|+|.|++.
T Consensus        54 l~L~~~Idp--e-S~~~v~~~kIei~L~K~e~   82 (150)
T 2kmw_A           54 LELYGKIMT--E-YRKNVGLRNIIFSIQKEER   82 (150)
T ss_dssp             EEBSSCEEE--E-EEEEEESSSEEEEEEECCS
T ss_pred             eEhhhcccc--c-ceEEecCCEEEEEEEECCC
Confidence            788888877  8 8888888889999999864

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=96.87  E-value=0.0041  Score=46.25  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=62.2

Q ss_pred             CceeeEEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      .|++.|.++.+...|.+.||.|  ++++|+.|.+  ..+.|.++..-      .       .++     ..|        
T Consensus         7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i--~~~~l~v~~kg------~-------~~~-----~~~--------   58 (131)
T 1wfi_A            7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDI--QRRHLRVGLKG------Q-------PPV-----VDG--------   58 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEE--ETTEEEEEETT------S-------CCS-----BCS--------
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccccceEEEE--eCCEEEEEECC------c-------eEE-----Eec--------
Confidence            4789999999999999999955  8999999999  56788887532      0       010     222        


Q ss_pred             EEECCCCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          109 SFNLPEGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       109 ~f~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                        .|...|+.  +.-.-++++| .|.|+|-|..+
T Consensus        59 --~L~~~I~~--e~s~w~i~~~k~v~i~L~K~~~   88 (131)
T 1wfi_A           59 --ELYNEVKV--EESSWLIEDGKVVTVHLEKINK   88 (131)
T ss_dssp             --CBSSCBCS--TTCEEEEETTTEEEEEEEBSSS
T ss_pred             --cccccccc--ccCEEEEcCCCEEEEEEEECCC
Confidence              36677877  8899999998 89999999864

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.00087  Score=50.51  Aligned_cols=85  Identities=9%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             cCceeeEEECCCe-------EEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCC
Q 039847           30 LNINGEWDDAGDN-------LMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDG  102 (172)
Q Consensus        30 ~~p~vDi~Et~d~-------~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~  102 (172)
                      ..|.++|+++.+.       ..|++.+| +++  ++.|.+  ..+.|.+++...     .   ..++   ..+.      
T Consensus         5 ~~p~~~W~Q~~~~~~~~k~~V~ltI~~~-~~~--~~~V~~--~~~~l~~~~~~~-----~---~~g~---~~~~------   62 (134)
T 2cg9_X            5 INPQVAWAQRSSTTDPERNYVLITVSIA-DCD--APELTI--KPSYIELKAQSK-----P---HVGD---ENVH------   62 (134)
T ss_dssp             ------CBCCCEEECCCSSEEEEECCCS-SEE--SCCCCB--CSSEEEECCEEC------------------CE------
T ss_pred             cCCCEEEEeCCCCcCCcCCEEEEEEEec-CCC--ceEEEE--ECCEEEEEEecc-----c---ccCC---ccCc------
Confidence            3588999999877       99999999 974  888888  567899987651     0   0000   0000      


Q ss_pred             eeeEEEEEECCCCCcCCCCcEEEEEeCCE-EEEEEeccC
Q 039847          103 KIDISKSFNLPEGVIVKPNCFKASVEDGV-LNVIFTKLK  140 (172)
Q Consensus       103 ~~~F~R~f~LP~~vd~~~d~I~A~~~nGV-L~V~vPK~~  140 (172)
                      .  |.-.+.|...|+.  +.-+.++.++. |.|+|.|++
T Consensus        63 ~--y~~~l~L~~~Idp--e~S~~~v~~~~~vei~L~K~~   97 (134)
T 2cg9_X           63 H--YQLHIDLYKEIIP--EKTMHKVANGQHYFLKLYKKD   97 (134)
T ss_dssp             E--BCEEEECSSCCCS--SSEEEEECCC--CEEEEEECS
T ss_pred             e--EEEEEEChhhccc--cccEEEECCCEEEEEEEEECC
Confidence            2  5567889998977  99999999998 999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.95
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.94
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.26
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	96.98
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.93
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	96.0
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	95.74

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.95  E-value=1.2e-28  Score=189.53  Aligned_cols=108  Identities=36%  Similarity=0.530  Sum_probs=96.9

Q ss_pred             ccCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847           29 FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK  108 (172)
Q Consensus        29 ~~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R  108 (172)
                      +..|++||.|++++|+|+++|| |++++||+|++ +++++|+|+|++     ..+.+.++..|+++|| .+|  +  |+|
T Consensus        40 ~~~p~~dv~e~~~~~~i~~~lP-G~~~edi~v~v-~~~~~l~i~~~~-----~~~~~~~~~~~~~~e~-~~~--~--f~r  107 (150)
T d1gmea_          40 FANARMDWKETPEAHVFKADLP-GVKKEEVKVEV-EDGNVLVVSGER-----TKEKEDKNDKWHRVER-SSG--K--FVR  107 (150)
T ss_dssp             HGGGCEEEEECSSEEEEEEECT-TCCGGGEEEEE-ETTTEEEEEECC-----CCCCCCTTCEEEECCC-CCC--C--EEE
T ss_pred             cCCCceeEEECCCEEEEEEEeC-CCccCCEEEEE-EEccceeEEEEE-----ecccccccceeeeeee-ccc--e--EEE
Confidence            4568999999999999999999 99999999999 467899999998     5555566778999999 888  8  999


Q ss_pred             EEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeec
Q 039847          109 SFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVL  150 (172)
Q Consensus       109 ~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~  150 (172)
                      +|.||.+++.  ++|+|+|+||||+|+|||.+.++++.++|.
T Consensus       108 ~~~LP~~vd~--~~i~A~~~nGvL~I~lpK~~~~~~~~~~I~  147 (150)
T d1gmea_         108 RFRLLEDAKV--EEVKAGLENGVLTVTVPKAEVKKPEVKAIQ  147 (150)
T ss_dssp             EEECSSCCCG--GGCEEEEETTEEEEEEECCCCCTTCCCCCC
T ss_pred             EEECCCCeee--ceeEEEEECCEEEEEEEcCCcCCCCceEEe
Confidence            9999999988  999999999999999999988888776664

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=3.3e-26  Score=167.99  Aligned_cols=104  Identities=20%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccc-cEEEEeeeecCCCeeeEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAV-MWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~-~~~~~Er~~~G~~~~~F~R~  109 (172)
                      .+|+||+|++++|+|.++|| |++++||+|++  +++.|+|+|++.     .....+.. .+++.++ ++|  .  |+|+
T Consensus        10 ~~pvdi~e~~~~~~i~~~lP-G~~~edi~v~v--~~~~l~I~~~~~-----~~~~~~~~~~~~~~~~-~~~--~--f~r~   76 (115)
T d1shsa_          10 FMPISIIEGDQHIKVIAWLP-GVNKEDIILNA--VGDTLEIRAKRS-----PLMITESERIIYSEIP-EEE--E--IYRT   76 (115)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TCCGGGEEEEE--ETTEEEEEEECC-----CCCCCTTCEEEEECSC-CCC--E--EEEE
T ss_pred             cCceEEEEcCCEEEEEEECC-CCCHHHEEEEE--ECCEEEEEEEec-----cccccccccEEEEeee-ccc--c--eEEE
Confidence            46799999999999999999 99999999999  678999999983     33223333 3444555 777  8  9999


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV  149 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I  149 (172)
                      |.||.+++.  ++|+|+|+||+|+|+|||.+..+++..+|
T Consensus        77 ~~lP~~vd~--~~i~A~~~nGvL~I~lpK~~~~~~~~I~I  114 (115)
T d1shsa_          77 IKLPATVKE--ENASAKFENGVLSVILPKAESSIKKGINI  114 (115)
T ss_dssp             EECSSCBCG--GGCEEEEETTEEEEEEEBCGGGCCEECCC
T ss_pred             EecCCceee--cceEEEEECCEEEEEEEeCCCCCCceeee
Confidence            999999988  99999999999999999998776654443

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.8e-06  Score=56.67  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847           32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN  111 (172)
Q Consensus        32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~  111 (172)
                      ++.||+++++...|.+.+| |+.++++.|.+  ..+.|.++...     ..     + .            .  |.-.+.
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~--~~~~l~v~~~~-----~~-----~-~------------~--y~~~~~   54 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIK-NVQKNDVNVEF--SEKELSALVKL-----PS-----G-E------------D--YNLKLE   54 (92)
T ss_dssp             CCEEEEECSSEEEEEECCC-SCCGGGEEEEC--SSSCEEEEEEC-----TT-----S-S------------E--EEEEEC
T ss_pred             CceeEEeCCCEEEEEEEeC-CCChHheEEEE--ecCEEEEEEEc-----CC-----C-c------------E--EEEEEE
Confidence            6799999999999999999 99999999999  66778887654     10     0 0            2  555678


Q ss_pred             CCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          112 LPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      |-..|+.  +..+.++.++.|.|+|-|+++
T Consensus        55 L~~~I~p--~~s~~~~~~~kiei~L~K~~~   82 (92)
T d1rl1a_          55 LLHPIIP--EQSTFKVLSTKIEIKLKKPEA   82 (92)
T ss_dssp             BSSCCCG--GGEEEEECSSSEEEEEECSSC
T ss_pred             cCcccCc--hhcEEEEeCCEEEEEEEECCC
Confidence            8888877  999999999999999999854

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0014  Score=47.76  Aligned_cols=93  Identities=8%  Similarity=0.033  Sum_probs=69.6

Q ss_pred             CceeeEEECC-CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           31 NINGEWDDAG-DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        31 ~p~vDi~Et~-d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      ..+-||++++ +..+|.+.+. |+.+++++|++  ..+.|+|+-....          +..+....- ..+...  |.-.
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K-~v~ke~~~V~f--~~~sl~v~~~~~~----------~~~~~~~~~-~~~~~~--~~~~   82 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLF--REQDFTLIFQTRD----------GNFLRLHPG-CGPHTT--FRWQ   82 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEE--CSSEEEEEECBCC----------HHHHHHSTT-CCTTSC--EEEE
T ss_pred             ccccceeecCCCEEEEEEEeC-CCchhheEEEE--eCCEEEEEEECCC----------Ccceeeccc-cCcCee--EEEe
Confidence            4679999985 7899999999 99999999999  6678998865411          001100000 111113  8889


Q ss_pred             EECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      +.|-..|+.  ++-+.++...-+.|+|-|++.
T Consensus        83 ~~L~~~I~p--e~S~~~v~~~kiei~L~K~~~  112 (134)
T d1wh0a_          83 VKLRNLIEP--EQCTFCFTASRIDICLRKRQS  112 (134)
T ss_dssp             EEBSSCEEE--EEEEEEECSSEEEEEEEESSS
T ss_pred             eecccccCh--hHcEEEeCCCEEEEEEEeCCC
Confidence            999999977  999999999999999999864

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0043  Score=42.84  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF  110 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f  110 (172)
                      ++++-|+.+.+...|.+.+| |.+  +++|.+  +.+.|.+++..     ..    .+.             .  |.-.+
T Consensus         3 p~~~~W~Qt~~~V~i~I~v~-~~~--~~~v~i--~~~~l~~~~~~-----~~----~~~-------------~--y~l~~   53 (110)
T d1ejfa_           3 PASAKWYDRRDYVFIEFCVE-DSK--DVNVNF--EKSKLTFSCLG-----GS----DNF-------------K--HLNEI   53 (110)
T ss_dssp             CCCEEEEECSSEEEEEECCT-TEE--EEEEEE--ETTEEEEEEEE-----TT----TTE-------------E--EEEEE
T ss_pred             CCCcEEEECCCEEEEEEEeC-CCC--CceEEE--EeceEEEEEEe-----cC----CCc-------------e--EEEEE
Confidence            46689999999999999999 964  677777  44568887765     11    011             2  45567


Q ss_pred             ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847          111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS  141 (172)
Q Consensus       111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~  141 (172)
                      .|-..|+.  +..+.++.++-|.|+|-|+++
T Consensus        54 ~L~~~I~~--~~s~~~v~~~kiei~L~K~~~   82 (110)
T d1ejfa_          54 DLFHCIDP--NDSKHKRTDRSILCCLRKGES   82 (110)
T ss_dssp             EBSSCEEE--EEEEEEECSSCEEEEEEESST
T ss_pred             EcccCccc--CccEEEEeCCEEEEEEEEcCC
Confidence            78888877  999999999999999999865

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.072  Score=37.08  Aligned_cols=81  Identities=14%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             CceeeEEECCCeEEEEEecCCCC-CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847           31 NINGEWDDAGDNLMFKATLPTGT-KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS  109 (172)
Q Consensus        31 ~p~vDi~Et~d~~vv~adLP~Gv-~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~  109 (172)
                      ..+..|.++.+...|.+.||.|. +.+||.|++  ..+.|.++-..     ..     +.             .  +.-.
T Consensus        19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~--~~~~l~v~v~~-----~~-----~~-------------~--~~l~   71 (124)
T d1wgva_          19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVAL--SSSSIRVAMLE-----EN-----GE-------------R--VLME   71 (124)
T ss_dssp             CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEE--CSSEEEEEEEC-----SS-----SE-------------E--EEEE
T ss_pred             CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEE--EeCEEEEEEec-----cC-----Cc-------------c--eEEe
Confidence            35689999999999999999554 458999999  56778777443     00     01             1  2334


Q ss_pred             EECCCCCcCCCCcEEEEEeCC-EEEEEEeccC
Q 039847          110 FNLPEGVIVKPNCFKASVEDG-VLNVIFTKLK  140 (172)
Q Consensus       110 f~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~  140 (172)
                      ..|...|+.  +.-.-+++++ +|.+.+.|.+
T Consensus        72 g~L~~~I~~--deS~w~i~~~~~~i~~lkK~~  101 (124)
T d1wgva_          72 GKLTHKINT--ESSLWSLEPGKCVLVNLSKVG  101 (124)
T ss_dssp             EEBSSCBCT--TTCEEEECTTSEEEEEECBSS
T ss_pred             CcccCcccc--cccEEEEeCCCEEEEEEEecC
Confidence            568888877  8899999888 4555666654

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.043  Score=39.05  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             cCceeeEEECCCeEEEEEecC--CCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847           30 LNINGEWDDAGDNLMFKATLP--TGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS  107 (172)
Q Consensus        30 ~~p~vDi~Et~d~~vv~adLP--~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~  107 (172)
                      ..|+..|.++.+...|.+.+|  .|++++||.|.+  ..+.|.|.-..     .       ..+      ..|       
T Consensus         6 ~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i--~~~~l~v~v~~-----~-------~~l------l~g-------   58 (131)
T d1wfia_           6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDI--QRRHLRVGLKG-----Q-------PPV------VDG-------   58 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEE--ETTEEEEEETT-----S-------CCS------BCS-------
T ss_pred             CCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEe--eCCEEEEEEcC-----C-------cee------ecc-------
Confidence            358899999999998888764  378999999999  45678876432     0       001      223       


Q ss_pred             EEEECCCCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847          108 KSFNLPEGVIVKPNCFKASVEDG-VLNVIFTKLKS  141 (172)
Q Consensus       108 R~f~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~~  141 (172)
                         .|...|+.  +.-.-.+++| +|.|+|-|..+
T Consensus        59 ---~L~~~I~~--des~W~ied~~~l~i~L~K~~~   88 (131)
T d1wfia_          59 ---ELYNEVKV--EESSWLIEDGKVVTVHLEKINK   88 (131)
T ss_dssp             ---CBSSCBCS--TTCEEEEETTTEEEEEEEBSSS
T ss_pred             ---cccCcccc--cccEEEEeCCCEEEEEEEECCC
Confidence               35666766  8888889875 89999999754