Citrus Sinensis ID: 039882

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140--
RKHKPKNSISNISKQSIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFLTR
ccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccHHHHHHHcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHcccHHHHHHHcHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEccccEEEEcHHHHHHccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccEEEEcccccHHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccEEEEEEccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHcccccccccccccccccccccccEEEEEHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcHHHccccccccEEEEccEEccccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccEEEEEEc
cccccccHHHHHHHHHHHcHHcHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccEEEEEccccccccEEEccccccccHHHHHHHHHHHccccEEccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccccHHHHHccccccccccccHHHHHccccHHHHHHHHHHccccHHHHHHHccHHHHHHHccHHHHHHHHHccccEccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEccEEEEEccccccccccccccccccccccEEEEEEEEEccccHHHHHHHccccEEEEEEcccccHccccccEEEccccEEEEEEEccccEEEEEHHHHHHHHHcccccccccccEEEEEccHHHccEEcccccccccEEEEEEccEEccccccEEEEEccccccHHHHHHHHHHccHHHHHHHcccHHHccccccEEEEEccccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEcccccEEEEEcccEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHHccHHHHHHHHccccccccccccHHHHHHHHHHHcEEccccEEEccccccHccEEEEEEEEEEEccccccccEEEEccEEEEcccccccccccHHcHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccEEEEEEc
rkhkpknsisniSKQSIKSSLSLALSLLRQSAPFLHRNALrfsalnhsfsqfHDMATESGKSFARRDRLLEIESKVHTWWEesnvfnaepgerppnpesgekffgnfpfpymngylhlghafsfsKLEFAAAYHRLKGanvllpfgfhctgmpikASADKLAREIKqfgnppvflkeaekeespqpeeaedpnggapldkfkskksKAAAKSGVQMYQWEIMRsfglsdseisefqepekwlnffpplaKEDLKAfglgcdwrrsfvtteinpfFDSFVQWQMRKLKSMGKIIKDVrytiysplddqpcadhdrasgegvqpqdytLIKMEvlqpfpakfgplegkKVYLAAAtlrpetmygqtnawvlpdgkygafeisetDVLIVTERAALNLAYqnfsripkkptclveltgydliglplksplsfneviYALPMLtiltdkgtgivtsvpsdapddymaLHDLkakpafrakfgvkdewvlpfevipiinipefgdksaERVCTDLKIKSQNEKDKLAEAKRLTYlrgftegtmlvgdfagkkvqdakpLIRSKLIEtgeaimysepekrvmsrsgdECVVALTDQWYITYGEEEWKRLATECLNSMnlyhdenrhgfehtlgwlnQWACsrsfglgtripwdpqflveslsdsTIYMAYYTVAHMLhkgdmygsttgsiepgqmtDEVWEFIfcggpypessnipsSILNRMKQEfeywypfdlrvsgkdLIQNHLTFCIYNHtaimsqrhwprgfrcnghimlnsekmskstGNFRTLKQAIEEFSADatrfsladagdgvddanfvfdtantGILRLTKEIAWMEEVLAVESslrtgppstyadrVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRlscgagglnrDLVWRFMDVQTrlitpicphYAEYVWRVILKKdgfavkagwptygtpdlILKSANKYLQDSIVLMRKLLQKQILgskkankkgapvatltedklKGLVYVNEQFDGWKAECLRILQSkfdsksrtfapdgEILEALQnssvgqasnfkqTQKLCMPFLrfkkdeakaigpqaldlklpfgEIEVLQENLDLIKRQLGLEEveilsatdpdalskagslssllkqnppspgnptaifltr
rkhkpknsisniskqsIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLkeaekeespqpeeaedpnggapldkfksKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAyqnfsripkkptCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVipiinipefgdkSAERVCTDlkiksqnekdklaeakrltylrgftegtmlvgdfagkkvqdakplirsklietgeaimysepekrvmsrsGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVEsslrtgppstyadrVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQilgskkankkgapvatltedklkgLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLssllkqnppspgnptaifltr
RKHKPknsisniskqsiksslslalsllrqsaPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLkeaekeespqpeeaeDPNGGAPLDKFkskkskaaaksGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDalskagslssllkQNPPSPGNPTAIFLTR
***********************ALSLLRQSAPFLHRNALRFSALNHSFSQFH************RDRLLEIESKVHTWWEESNV*****************FFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREI************************************************VQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDD****************QDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKI*********AEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMY***********GDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLN***********RTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSK*****GAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKF*****************************QTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEIL***********************************
************SKQSIKSSLSLALSLLRQSAPFLHRNA*****************************LLEIESKVHTWWEESNVFNAEPG******ESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKL*********************TEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQ***************LC******************LDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDP****************PPSPGNPTAIFLTR
****************IKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKE****************GGAPLD**************VQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEP*********DECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGS*********VATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFLTR
******NSISNISKQSIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK*******************************SGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKK****GAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDP****************PPSPGNPTAIFLTR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RKHKPKNSISNISKQSIKSSLSLALSLLRQSAPFLHRNALRFSALNHSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVxxxxxxxxxxxxxxxxxxxxxTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGExxxxxxxxxxxxxxxxxxxxxILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFLTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1142 2.2.26 [Sep-21-2011]
Q9P2J5 1176 Leucine--tRNA ligase, cyt yes no 0.921 0.894 0.490 0.0
Q8BMJ2 1178 Leucine--tRNA ligase, cyt yes no 0.923 0.895 0.489 0.0
Q5R614 1176 Leucine--tRNA ligase, cyt yes no 0.921 0.894 0.490 0.0
Q54N831058 Leucine--tRNA ligase, cyt yes no 0.893 0.964 0.479 0.0
Q09996 1186 Leucine--tRNA ligase OS=C yes no 0.889 0.856 0.481 0.0
Q104901111 Putative leucine--tRNA li yes no 0.918 0.944 0.451 0.0
P108571123 Leucine--tRNA ligase, cyt N/A no 0.903 0.918 0.434 0.0
P266371090 Leucine--tRNA ligase, cyt yes no 0.908 0.952 0.416 0.0
Q9YD97959 Leucine--tRNA ligase OS=A yes no 0.768 0.915 0.334 1e-142
O58698967 Leucine--tRNA ligase OS=P yes no 0.801 0.946 0.311 1e-133
>sp|Q9P2J5|SYLC_HUMAN Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2 Back     alignment and function desciption
 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1084 (49%), Positives = 721/1084 (66%), Gaps = 32/1084 (2%)

Query: 61   KSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGH 120
            K  A+ D L +IE ++   W+   VF             G K+F  FP+PYMNG LHLGH
Sbjct: 5    KGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQTSKG-KYFVTFPYPYMNGRLHLGH 63

Query: 121  AFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEK 180
             FS SK EFA  Y RLKG   L PFG HCTGMPIKA ADKL REI+ +G PP F  + E+
Sbjct: 64   TFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDF-PDEEE 122

Query: 181  EESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEK 240
            EE     + ED       DK K KKSKAAAK+G   YQW IM+S GLSD EI +F E E 
Sbjct: 123  EEEETSVKTEDI---IIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEH 179

Query: 241  WLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTI 300
            WL++FPPLA +DLK  GL  DWRRSF+TT++NP++DSFV+WQ   L+   KI    RYTI
Sbjct: 180  WLDYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTI 239

Query: 301  YSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETM 360
            YSP D QPC DHDR +GEGV PQ+YTL+K++VL+P+P+K   L+GK ++L AATLRPETM
Sbjct: 240  YSPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETM 299

Query: 361  YGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIG 420
            +GQTN WV PD KY  FE    D+ I T++AA N++YQ F++       + EL G +++G
Sbjct: 300  FGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILG 359

Query: 421  LPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVK 480
              L +PL+  +VIY LPMLTI  DKGTG+VTSVPSD+PDD  AL DLK K A RAK+G++
Sbjct: 360  ASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIR 419

Query: 481  DEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLV 540
            D+ VLPFE +P+I IP FG+ SA  +C +LKI+SQN+++KLAEAK   YL+GF EG MLV
Sbjct: 420  DDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLV 479

Query: 541  GDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEW 600
              F G+KVQD K  I+ K+I+ G+A++Y EPEK+VMSRS DECVVAL DQWY+ YGEE W
Sbjct: 480  DGFKGQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENW 539

Query: 601  KRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTI 660
            K+  ++CL ++  + +E R  FE TLGWL + ACSR++GLGT +PWD Q+L+ESLSDSTI
Sbjct: 540  KKQTSQCLKNLETFCEETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTI 599

Query: 661  YMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCG-GPYPESSNIPSSILNRM 717
            YMA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P+ + I    L+++
Sbjct: 600  YMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPK-TQIAKEKLDQL 658

Query: 718  KQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMS 775
            KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMS
Sbjct: 659  KQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMS 718

Query: 776  KSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVL 835
            KSTGNF TL QAI++FSAD  R +LADAGD V+DANFV   A+ GILRL   + W++E++
Sbjct: 719  KSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMV 778

Query: 836  AVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLS 895
            A   SLR+GP ST+ DRVF +E+N  +  TDQ+Y+  MF+EALKTGF++ QAA+D+YR  
Sbjct: 779  ANWDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYR-E 837

Query: 896  CGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILK 955
                G++R+LV+RF++VQT L+ P CPH  E++W ++ K D   + A WP  G  + +L 
Sbjct: 838  LAVEGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSI-MNASWPVAGPVNEVLI 896

Query: 956  SANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECL 1015
             +++YL +    +R  L+  ++ +K       P+   +       +YV + +  W+   L
Sbjct: 897  HSSQYLMEVTHDLRLRLKNYMMPAKGKKTDKQPLQKPSH----CTIYVAKNYPPWQHTTL 952

Query: 1016 RILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQA 1075
             +L+  F++ +    PD +++     S +G     K+  K  MPF+   K+  + +GP+ 
Sbjct: 953  SVLRKHFEANNGKL-PDNKVIA----SELGSMPELKKYMKKVMPFVAMIKENLEKMGPRI 1007

Query: 1076 LDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNP 1135
            LDL+L F E  VL EN+  +   L LE +E+  A++ +   +              PG P
Sbjct: 1008 LDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIREDC----------CPGKP 1057

Query: 1136 TAIF 1139
              +F
Sbjct: 1058 LNVF 1061
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a two step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Exhibits a post-transfer editing activity to hydrolyze mischarged tRNAs.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 4
>sp|Q8BMJ2|SYLC_MOUSE Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2 Back     alignment and function description
>sp|Q5R614|SYLC_PONAB Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1 Back     alignment and function description
>sp|Q54N83|SYLC_DICDI Leucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|Q09996|SYLC_CAEEL Leucine--tRNA ligase OS=Caenorhabditis elegans GN=lrs-1 PE=3 SV=2 Back     alignment and function description
>sp|Q10490|SYLC_SCHPO Putative leucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lrs1 PE=1 SV=1 Back     alignment and function description
>sp|P10857|SYLC_NEUCR Leucine--tRNA ligase, cytoplasmic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=leu-6 PE=3 SV=2 Back     alignment and function description
>sp|P26637|SYLC_YEAST Leucine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC60 PE=1 SV=1 Back     alignment and function description
>sp|Q9YD97|SYL_AERPE Leucine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|O58698|SYL_PYRHO Leucine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=leuS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1142
2555709561087 leucyl-tRNA synthetase, putative [Ricinu 0.950 0.998 0.829 0.0
2555811031087 leucyl-tRNA synthetase, putative [Ricinu 0.950 0.999 0.822 0.0
2241294521087 predicted protein [Populus trichocarpa] 0.946 0.994 0.820 0.0
4495190441090 PREDICTED: leucine--tRNA ligase, cytopla 0.949 0.994 0.808 0.0
4494620831090 PREDICTED: leucine--tRNA ligase, cytopla 0.949 0.994 0.808 0.0
2254652041085 PREDICTED: leucyl-tRNA synthetase, cytop 0.946 0.996 0.831 0.0
1478414131085 hypothetical protein VITISV_037862 [Viti 0.946 0.996 0.830 0.0
3565408701093 PREDICTED: leucyl-tRNA synthetase, cytop 0.950 0.993 0.793 0.0
3564971271090 PREDICTED: leucyl-tRNA synthetase, cytop 0.950 0.996 0.792 0.0
2241200621068 predicted protein [Populus trichocarpa] 0.934 0.999 0.785 0.0
>gi|255570956|ref|XP_002526429.1| leucyl-tRNA synthetase, putative [Ricinus communis] gi|223534209|gb|EEF35924.1| leucyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1899 bits (4920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1090 (82%), Positives = 995/1090 (91%), Gaps = 5/1090 (0%)

Query: 55   MATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNG 114
            MATE  KSFARRDRLLEIE K  TWW E +VF +EPG++ P P+  EKFFGNFPFPYMNG
Sbjct: 1    MATEGAKSFARRDRLLEIEQKARTWWGEKDVFRSEPGKKSPGPD--EKFFGNFPFPYMNG 58

Query: 115  YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 174
            +LHLGHAFS SKLEFAAAYHRL+GANVLLPF FHCTGMPIKASADKL REI+QFG+PP+F
Sbjct: 59   FLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLRREIQQFGDPPIF 118

Query: 175  LKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISE 234
             KE E++   Q E  E P G  P+DKFK KKSKAA+KSG QMYQWEIMRSFGLSD+EIS+
Sbjct: 119  TKEVEEQVETQTETDEAP-GNVPIDKFKGKKSKAASKSGGQMYQWEIMRSFGLSDTEISK 177

Query: 235  FQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIK 294
            FQ+P +WL FFPPLA EDLKAFGLGCDWRRSFVTT+INP+FDSFVQWQMRKLKSMGKI+K
Sbjct: 178  FQDPYEWLRFFPPLAMEDLKAFGLGCDWRRSFVTTDINPYFDSFVQWQMRKLKSMGKIVK 237

Query: 295  DVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAAT 354
            DVRYTI+SPLD QPCADHDRASGEGVQPQ+YT+IKMEVL PFPAK GPLEGK V+LAAAT
Sbjct: 238  DVRYTIFSPLDGQPCADHDRASGEGVQPQEYTIIKMEVLPPFPAKIGPLEGKNVFLAAAT 297

Query: 355  LRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELT 414
            LRPETMYGQTNAWVLPDGKYGAFEI+ETDV I+TERAALNLAYQNFSR P+KP+CLVELT
Sbjct: 298  LRPETMYGQTNAWVLPDGKYGAFEINETDVFILTERAALNLAYQNFSRFPQKPSCLVELT 357

Query: 415  GYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFR 474
            GYDLIGL LKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPA R
Sbjct: 358  GYDLIGLRLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPALR 417

Query: 475  AKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFT 534
            AK+GV DEWV+PFE++PIINIPEFGDK+AE+VC DLKIKSQNEK+KLAEAKRLTYLRGFT
Sbjct: 418  AKYGVIDEWVMPFEIVPIINIPEFGDKAAEKVCMDLKIKSQNEKEKLAEAKRLTYLRGFT 477

Query: 535  EGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYIT 594
            EGTMLVG+ AG+KVQ+AKPLIR+KLIETGEAI+YSEPEKRV+SRSGDECVVALTDQWYIT
Sbjct: 478  EGTMLVGELAGRKVQEAKPLIRAKLIETGEAIIYSEPEKRVVSRSGDECVVALTDQWYIT 537

Query: 595  YGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVES 654
            YGEEEW++LA ECL+SMNLY DE RHGFEHTL WLNQWACSRSFGLGTRIPWD  FLVES
Sbjct: 538  YGEEEWRKLAEECLSSMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDKDFLVES 597

Query: 655  LSDSTIYMAYYTVAHMLHKGDMYGSTT-GSIEPGQMTDEVWEFIFCGGPYPESSNIPSSI 713
            LSDSTIYMAYYTVAH+LH  DMYG+     I+P QMTDEVW+FI CGG YP+SS+I SS+
Sbjct: 598  LSDSTIYMAYYTVAHLLHNDDMYGTNKPHPIQPAQMTDEVWDFIICGGSYPKSSDISSSV 657

Query: 714  LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEK 773
            L +MK EFEYWYPFDLRVSGKDLIQNHLTFC+YNHTAIM++ HWPRGFRCNGHIMLNSEK
Sbjct: 658  LEKMKHEFEYWYPFDLRVSGKDLIQNHLTFCMYNHTAIMAKHHWPRGFRCNGHIMLNSEK 717

Query: 774  MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWM-E 832
            MSKSTGNFRTL+QAIEEFSADATRFSLADAGDGVDDANFVF+TAN  ILRLTKE++WM E
Sbjct: 718  MSKSTGNFRTLRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILRLTKELSWMEE 777

Query: 833  EVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 892
            E+LAVESSLR GPPSTYADRVFENE+NIAV+MT+Q Y+ YMFREALKTGFYDLQAARDEY
Sbjct: 778  EILAVESSLRMGPPSTYADRVFENEMNIAVKMTEQSYRGYMFREALKTGFYDLQAARDEY 837

Query: 893  RLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDL 952
            R SCG G +NRDL+WRF+DVQTRLI PICPHYAEYVWR +L+KDGF V AGWPT G+PDL
Sbjct: 838  RFSCGTGNMNRDLLWRFVDVQTRLIAPICPHYAEYVWRELLRKDGFVVNAGWPTAGSPDL 897

Query: 953  ILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKA 1012
             LK+ANKYLQDSIV MRKLLQKQ  GSKKANKKGAPVATLTE K+ GL+YVNE+FDGWKA
Sbjct: 898  TLKAANKYLQDSIVNMRKLLQKQHSGSKKANKKGAPVATLTEGKMIGLIYVNERFDGWKA 957

Query: 1013 ECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIG 1072
            ECLRILQSKFDS SRTFAPD EI+EAL++S+VGQA++FKQTQKLCMPFLRFKKDEA A+G
Sbjct: 958  ECLRILQSKFDSNSRTFAPDTEIMEALKSSTVGQATDFKQTQKLCMPFLRFKKDEAIAMG 1017

Query: 1073 PQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSP 1132
            PQALDLKLPFGE +VLQEN+DLIKRQLGLEEVEI  AT+ DA+++AGS  S+L QN PSP
Sbjct: 1018 PQALDLKLPFGEFDVLQENVDLIKRQLGLEEVEIFYATNADAVARAGSQVSVLNQNLPSP 1077

Query: 1133 GNPTAIFLTR 1142
            G P+AI+LTR
Sbjct: 1078 GKPSAIYLTR 1087

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581103|ref|XP_002531366.1| leucyl-tRNA synthetase, putative [Ricinus communis] gi|223529026|gb|EEF31014.1| leucyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224129452|ref|XP_002328720.1| predicted protein [Populus trichocarpa] gi|222839018|gb|EEE77369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449519044|ref|XP_004166545.1| PREDICTED: leucine--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462083|ref|XP_004148771.1| PREDICTED: leucine--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225465204|ref|XP_002264666.1| PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147841413|emb|CAN66687.1| hypothetical protein VITISV_037862 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540870|ref|XP_003538907.1| PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|356497127|ref|XP_003517414.1| PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|224120062|ref|XP_002331127.1| predicted protein [Populus trichocarpa] gi|222872855|gb|EEF09986.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1142
TAIR|locus:20122401091 AT1G09620 [Arabidopsis thalian 0.947 0.991 0.737 0.0
UNIPROTKB|F1PZP6 1176 LARS "Uncharacterized protein" 0.906 0.880 0.495 3.6e-279
UNIPROTKB|A6QLR2 1176 LARS "Uncharacterized protein" 0.905 0.879 0.494 5.9e-279
UNIPROTKB|Q9P2J5 1176 LARS "Leucine--tRNA ligase, cy 0.907 0.880 0.486 2.6e-276
UNIPROTKB|E1C2I9 1177 LARS "Uncharacterized protein" 0.908 0.881 0.489 1.1e-275
MGI|MGI:1913808 1178 Lars "leucyl-tRNA synthetase" 0.908 0.880 0.485 2.3e-275
UNIPROTKB|F1LQC0 1179 Lars "Protein Lars" [Rattus no 0.908 0.880 0.484 1.3e-274
FB|FBgn0053123 1182 CG33123 [Drosophila melanogast 0.912 0.881 0.491 3.4e-274
UNIPROTKB|F5H698 1130 LARS "Leucine--tRNA ligase, cy 0.778 0.786 0.498 2.6e-272
UNIPROTKB|F1RM15 1136 LARS "Uncharacterized protein" 0.874 0.879 0.500 8.5e-271
TAIR|locus:2012240 AT1G09620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4334 (1530.7 bits), Expect = 0., P = 0.
 Identities = 802/1088 (73%), Positives = 923/1088 (84%)

Query:    55 MATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNG 114
             MA+ES KS+ARRDRLLEIE+ V  WWE+ +VF AE  E  P P  GEKFF  FPFPYMNG
Sbjct:     1 MASES-KSYARRDRLLEIEATVRKWWEDEDVFRAESCENLPKP--GEKFFSTFPFPYMNG 57

Query:   115 YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 174
             YLH+GHAFS SK++FA+AYHRL+GANVLLPFGFHCTGMPIKASADKL REI+QFGNPPVF
Sbjct:    58 YLHIGHAFSLSKVDFASAYHRLRGANVLLPFGFHCTGMPIKASADKLRREIEQFGNPPVF 117

Query:   175 LXXXXXXXXXXXXXXXDPNGGAPLD-KFXXXXXXXXXXXGVQMYQWEIMRSFGLSDSEIS 233
                             D     P+  +F           G Q+YQWEIMRSFGL+DSEI+
Sbjct:   118 TAEDTTKVPEVQEESSDTIA-LPIPGQFKGKKSKVAAKAGGQVYQWEIMRSFGLTDSEIA 176

Query:   234 EFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKII 293
              F+EP +WL +FPPLA EDL+A+GLGCDWRRSFVTT++NPFFD+FV+WQMRKLKSMGKI+
Sbjct:   177 NFREPSEWLYYFPPLAVEDLRAYGLGCDWRRSFVTTDVNPFFDAFVRWQMRKLKSMGKIV 236

Query:   294 KDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAA 353
             KD RYTI+SPLD QPCADHDRA+GEGVQPQ+YTLIKMEV++PFP K GPLEGK+V+LAAA
Sbjct:   237 KDRRYTIFSPLDGQPCADHDRATGEGVQPQEYTLIKMEVVKPFPLKLGPLEGKRVFLAAA 296

Query:   354 TLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVEL 413
             TLRPETMYGQTNAWVLPDGKYGA+EISET+V I+TERAALNLAYQNFS+ P++P+CLVEL
Sbjct:   297 TLRPETMYGQTNAWVLPDGKYGAYEISETEVFILTERAALNLAYQNFSKNPQEPSCLVEL 356

Query:   414 TGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAF 473
             TGYDLIGLPL+SPLS NE+IYALPMLTILT+KGTGIVTSVPSDAPDDYMAL DL  KPA 
Sbjct:   357 TGYDLIGLPLRSPLSVNEIIYALPMLTILTNKGTGIVTSVPSDAPDDYMALQDLIKKPAL 416

Query:   474 RAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGF 533
             + K+GVK EW LP E+IPIINIPEFGDK+AE+VC DLKIKSQN+K+KLAEAKRLTYL+GF
Sbjct:   417 QDKYGVKTEW-LPTEIIPIINIPEFGDKAAEKVCLDLKIKSQNDKEKLAEAKRLTYLKGF 475

Query:   534 TEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYI 593
             TEGTML+G+F G+KVQ+ KP+I++KLIETGEAI+YSEPEK VMSRSGDECVVALTDQWYI
Sbjct:   476 TEGTMLIGEFFGRKVQEIKPIIKTKLIETGEAIIYSEPEKPVMSRSGDECVVALTDQWYI 535

Query:   594 TYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVE 653
             TYGE EW+++A ECL+ MNLY DE RHGFEHTL WLNQWACSRSFGLGTRIPWD QFLVE
Sbjct:   536 TYGESEWRKIAEECLSKMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQFLVE 595

Query:   654 SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSI 713
             SLSDS++YMAYYTVAH+ H GDMY  +   I P QM DEVWE++FC GPYP+SS+IPS++
Sbjct:   596 SLSDSSLYMAYYTVAHIFHDGDMYKGSKSLIRPQQMNDEVWEYLFCDGPYPKSSDIPSAV 655

Query:   714 LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEK 773
             L+ MKQEF+YWYP DLRVSGKDLIQNHLTF IYNHTA+M+ R+WPRG RCNGHIMLNSEK
Sbjct:   656 LSEMKQEFDYWYPLDLRVSGKDLIQNHLTFFIYNHTALMANRNWPRGIRCNGHIMLNSEK 715

Query:   774 MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEE 833
             MSKSTGNFRTL+Q+IEEFSA  TRF LADAGDGVDDANF F+TAN  ILRLTKE+ WMEE
Sbjct:   716 MSKSTGNFRTLRQSIEEFSATGTRFCLADAGDGVDDANFAFETANAAILRLTKELTWMEE 775

Query:   834 VLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYR 893
             VL VESSLRTGPPSTYAD+VFEN++NIA+ +T++ YK+ +FREALK GFYDLQAARDEYR
Sbjct:   776 VLDVESSLRTGPPSTYADKVFENDMNIALRLTERAYKDCLFREALKNGFYDLQAARDEYR 835

Query:   894 LSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLI 953
             LSCG GG++ DL+ +FMDVQTRLI PICPH+A+YVWR +L K+G  + AGWP    PDL+
Sbjct:   836 LSCGTGGMHHDLLLKFMDVQTRLIVPICPHFADYVWRKVLNKEGCVLTAGWPPSNEPDLV 895

Query:   954 LKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAE 1013
             LKSANKYLQDSIVLMRKLLQKQ+ GSKK  KKGA V  + E KLKGLVYVNEQFDGW+A 
Sbjct:   896 LKSANKYLQDSIVLMRKLLQKQLSGSKKGAKKGAQVTAVPEGKLKGLVYVNEQFDGWRAH 955

Query:  1014 CLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGP 1073
             CLRILQS+FD ++ +F PD E+L  L  + + +  N K  QK+CMPFL+FKKDEA +IG 
Sbjct:   956 CLRILQSRFDQQTCSFPPDTEMLAELSATLLQEGKNLKAIQKVCMPFLKFKKDEAISIGT 1015

Query:  1074 QALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDXXXXXXXXXXXXXQNPPSPG 1133
             QAL+L+LPFGEIEVLQ N DLI+RQLGLEEVEI SA+DPD             QNPPSPG
Sbjct:  1016 QALNLRLPFGEIEVLQSNKDLIRRQLGLEEVEIYSASDPDDVSIAGPHASLLTQNPPSPG 1075

Query:  1134 NPTAIFLT 1141
             +PTAIF+T
Sbjct:  1076 SPTAIFVT 1083
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004823 "leucine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0008295 "spermidine biosynthetic process" evidence=RCA
UNIPROTKB|F1PZP6 LARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLR2 LARS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2J5 LARS "Leucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2I9 LARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1913808 Lars "leucyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQC0 Lars "Protein Lars" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0053123 CG33123 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F5H698 LARS "Leucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RM15 LARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BMJ2SYLC_MOUSE6, ., 1, ., 1, ., 40.48940.92380.8955yesno
Q10490SYLC_SCHPO6, ., 1, ., 1, ., 40.45120.91850.9441yesno
Q5R614SYLC_PONAB6, ., 1, ., 1, ., 40.49070.92110.8945yesno
Q54N83SYLC_DICDI6, ., 1, ., 1, ., 40.47910.89310.9640yesno
Q8U2E6SYL_PYRFU6, ., 1, ., 1, ., 40.31040.80030.9451yesno
Q9V0B9SYL_PYRAB6, ., 1, ., 1, ., 40.30690.80470.9503yesno
O58698SYL_PYRHO6, ., 1, ., 1, ., 40.31170.80120.9462yesno
Q8NKR7SYL_PYRKO6, ., 1, ., 1, ., 40.31100.80210.9472yesno
P26637SYLC_YEAST6, ., 1, ., 1, ., 40.41610.90890.9522yesno
Q9P2J5SYLC_HUMAN6, ., 1, ., 1, ., 40.49070.92110.8945yesno
Q09996SYLC_CAEEL6, ., 1, ., 1, ., 40.48140.88960.8566yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.40.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00860050
aminoacyl-tRNA ligase (EC-6.1.1.4) (1087 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00180323
aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa)
     •• 0.904
gw1.VII.52.1
branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)
   • •• 0.902
fgenesh4_pm.C_LG_IX000386
hypothetical protein (339 aa)
     •• 0.900
gw1.1161.2.1
hypothetical protein (342 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_XI0275
aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa)
     •  0.899
estExt_Genewise1_v1.C_LG_II1818
hypothetical protein (319 aa)
     •  0.899
estExt_Genewise1_v1.C_LG_IX0414
SubName- Full=Putative uncharacterized protein; (404 aa)
   •  • 0.794
gw1.120.71.1
hypothetical protein (874 aa)
   •  • 0.668
estExt_Genewise1_v1.C_LG_II3255
arginine-tRNA ligase (EC-6.1.1.19) (590 aa)
   •••• 0.658
eugene3.00050364
translation elongation factor EF-2 subunit (844 aa)
  •   • 0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1142
PLN029591084 PLN02959, PLN02959, aminoacyl-tRNA ligase 0.0
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 0.0
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 0.0
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 1e-137
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 1e-67
cd07959117 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d 3e-40
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 5e-28
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 6e-26
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 5e-24
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 2e-17
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 1e-14
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 1e-13
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 2e-13
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 4e-13
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 1e-12
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 6e-12
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-11
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 3e-11
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 6e-10
PTZ00419995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 2e-09
cd00672213 cd00672, CysRS_core, catalytic core domain of cyst 3e-09
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 4e-09
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 4e-09
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 1e-08
PRK00260463 PRK00260, cysS, cysteinyl-tRNA synthetase; Validat 1e-08
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 4e-08
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 6e-08
COG0215464 COG0215, CysS, Cysteinyl-tRNA synthetase [Translat 8e-08
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 2e-07
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 2e-07
TIGR00435464 TIGR00435, cysS, cysteinyl-tRNA synthetase 3e-07
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 4e-07
pfam01406301 pfam01406, tRNA-synt_1e, tRNA synthetases class I 5e-07
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 8e-07
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 9e-07
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 1e-06
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 5e-06
PLN02843974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 1e-05
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 2e-05
PLN02946557 PLN02946, PLN02946, cysteine-tRNA ligase 2e-04
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 3e-04
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 4e-04
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 4e-04
PRK06039975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 6e-04
PTZ00399651 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro 7e-04
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 8e-04
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 8e-04
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 0.002
PRK149001052 PRK14900, valS, valyl-tRNA synthetase; Provisional 0.002
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 0.003
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 0.003
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 0.004
PRK14536490 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi 0.004
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score = 2277 bits (5902), Expect = 0.0
 Identities = 875/1087 (80%), Positives = 972/1087 (89%), Gaps = 4/1087 (0%)

Query: 55   MATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNG 114
            M  E GKS ARRDRLLEIE  V  WWEE  VF AE G+ PP P  GEKFFGNFP+PYMNG
Sbjct: 1    MMAEGGKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKP--GEKFFGNFPYPYMNG 58

Query: 115  YLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVF 174
             LHLGHAFS SKLEFAAAYHRL+GANVLLPF FHCTGMPIKASADKLAREI+Q+GNPPVF
Sbjct: 59   LLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVF 118

Query: 175  LKE-AEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEIS 233
             +E  ++  +    +AE     AP DKFK KKSKA AKSG Q YQWEIMRSFGL DSEI+
Sbjct: 119  PEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIA 178

Query: 234  EFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKII 293
            +FQ+P  WL++FPPLAKEDLKAFGLGCDWRRSF+TT++NP++D+FV+WQ RKLK  GKI+
Sbjct: 179  KFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIV 238

Query: 294  KDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAA 353
            KD RYTIYSPLD QPCADHDRASGEGV PQ+Y LIKMEVL PFP K   LEGKKV+LAAA
Sbjct: 239  KDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAA 298

Query: 354  TLRPETMYGQTNAWVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVEL 413
            TLRPETMYGQTN WVLPDGKYGA+EI++T+V I+T RAALNLAYQNFS++P KPTCLVEL
Sbjct: 299  TLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVEL 358

Query: 414  TGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAF 473
            TGYDLIGLPLKSPL+FNEVIYALPMLTILTDKGTG+VTSVPSD+PDDYMAL DLKAKPA 
Sbjct: 359  TGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPAL 418

Query: 474  RAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGF 533
            RAK+GVKDEWVLPFEV+PIINIPEFGDKSAE+VC DLKIKSQN+K+KLAEAKRLTYL+GF
Sbjct: 419  RAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGF 478

Query: 534  TEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYI 593
            T+GTMLVG++AG+KVQ+AKPLI+ KLIE G+AI+YSEPEK+VMSRSGDECVVALTDQWY+
Sbjct: 479  TDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYL 538

Query: 594  TYGEEEWKRLATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVE 653
            TYGEEEWK+ A +CL+ MNLY DE RHGFEHTLGWLNQWACSRSFGLGTRIPWD QFL+E
Sbjct: 539  TYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIE 598

Query: 654  SLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSI 713
            SLSDSTIYMAYYTVAH+L  GDMYG    SI+P QMTDEVW+F+FCGGP P+SS+IP+ +
Sbjct: 599  SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSSDIPAEL 658

Query: 714  LNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEK 773
            L +MKQEFEYWYPFDLRVSGKDLIQNHLTF IYNHTAI ++ HWPRGFRCNGH+MLNSEK
Sbjct: 659  LEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEK 718

Query: 774  MSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEE 833
            MSKSTGNF TL+QAIEEFSADATRF+LADAGDGVDDANFVF+TAN  ILRLTKEIAWMEE
Sbjct: 719  MSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEE 778

Query: 834  VLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYR 893
            VLA ESSLRTGPPSTYADRVFENEINIA+  T+++Y+  MFREALK+GFYDLQAARDEYR
Sbjct: 779  VLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYR 838

Query: 894  LSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLI 953
            LSCG+GG+NRDLVWRFMDVQTRLITPICPHYAE+VWR ILKK+GFAV AGWP  G PDL 
Sbjct: 839  LSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAGEPDLT 898

Query: 954  LKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAE 1013
            LK ANKYLQDSIV  RKLLQKQ+ GSKKA K GAPV TL E KL GL+YV E++DGWK E
Sbjct: 899  LKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPV-TLPEKKLAGLIYVAEKYDGWKEE 957

Query: 1014 CLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGP 1073
            CLRILQSKFDS+SRTFAPD EILEAL+ SSVGQ +NFKQ QKLCMPF++FKKDEA A+GP
Sbjct: 958  CLRILQSKFDSQSRTFAPDAEILEALKESSVGQEANFKQVQKLCMPFVKFKKDEAIAVGP 1017

Query: 1074 QALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPG 1133
            QALDLKLPF EIEVLQENL+LIKRQLGLEEVEILSA+DPDA++KAG+ +SLLKQNPPSPG
Sbjct: 1018 QALDLKLPFDEIEVLQENLELIKRQLGLEEVEILSASDPDAVAKAGAHASLLKQNPPSPG 1077

Query: 1134 NPTAIFL 1140
            NP AIF+
Sbjct: 1078 NPVAIFV 1084

Length = 1084
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1142
PLN029591084 aminoacyl-tRNA ligase 100.0
KOG04371080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PTZ004271205 isoleucine-tRNA ligase, putative; Provisional 100.0
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PLN02943958 aminoacyl-tRNA ligase 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
PLN023811066 valyl-tRNA synthetase 100.0
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
KOG0432995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
KOG04341070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
PLN02224616 methionine-tRNA ligase 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
PLN02610801 probable methionyl-tRNA synthetase 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 99.98
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.97
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.96
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.95
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.95
PLN02946557 cysteine-tRNA ligase 99.94
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.94
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.93
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.91
cd00674353 LysRS_core_class_I catalytic core domain of class 99.89
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.86
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.83
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.78
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.76
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.73
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.71
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.7
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.67
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.64
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.63
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.6
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.52
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.48
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.38
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.37
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.27
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.22
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.17
cd00802143 class_I_aaRS_core catalytic core domain of class I 98.93
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 98.86
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 98.53
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 98.46
PLN02286576 arginine-tRNA ligase 98.25
cd09287240 GluRS_non_core catalytic core domain of non-discri 97.81
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.71
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 97.7
PLN02286576 arginine-tRNA ligase 97.67
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 97.55
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.26
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 97.17
PTZ00402601 glutamyl-tRNA synthetase; Provisional 96.88
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 96.81
PLN03233523 putative glutamate-tRNA ligase; Provisional 96.77
PLN02907722 glutamate-tRNA ligase 96.61
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 96.47
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 96.42
PLN02859788 glutamine-tRNA ligase 96.36
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 96.33
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 96.22
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 96.22
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 96.21
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 96.12
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 96.1
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 96.05
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 96.02
PRK05347554 glutaminyl-tRNA synthetase; Provisional 95.98
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 95.91
PRK14703771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 95.86
cd00808239 GluRS_core catalytic core domain of discriminating 95.64
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 95.56
PLN02627535 glutamyl-tRNA synthetase 95.34
PRK12558445 glutamyl-tRNA synthetase; Provisional 95.11
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 94.77
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 94.62
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 94.24
cd00802143 class_I_aaRS_core catalytic core domain of class I 94.21
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 94.2
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 93.64
PRK13354410 tyrosyl-tRNA synthetase; Provisional 93.59
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 93.56
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 93.25
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 93.23
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 92.49
PRK05912408 tyrosyl-tRNA synthetase; Validated 92.06
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 91.66
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 91.39
PRK08560329 tyrosyl-tRNA synthetase; Validated 89.34
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 89.27
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 89.05
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 87.37
PLN02563 963 aminoacyl-tRNA ligase 86.73
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 86.57
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 86.08
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 85.63
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 85.16
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 85.06
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 84.7
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 84.59
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 83.28
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 83.26
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 83.09
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 81.0
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=3.4e-224  Score=2121.20  Aligned_cols=1077  Identities=81%  Similarity=1.338  Sum_probs=971.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCC
Q 039882           60 GKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGA  139 (1142)
Q Consensus        60 ~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~  139 (1142)
                      ..+++||++|.++|++||++|+++++|+.+++.+.+.  ++++|++|+|||||||.||||||+|+|++||++||+||+||
T Consensus         6 ~~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~--~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~   83 (1084)
T PLN02959          6 GKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPK--PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGA   83 (1084)
T ss_pred             ccCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCC--CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999999987643211  15899999999999999999999999999999999999999


Q ss_pred             ceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCC-CCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhH
Q 039882          140 NVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEES-PQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQ  218 (1142)
Q Consensus       140 ~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  218 (1142)
                      ||+|||||||||||||++|+|++++++++|++++||...+..+. +.+++.....+..++++|+++|++.++|++..++|
T Consensus        84 ~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~  163 (1084)
T PLN02959         84 NVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQ  163 (1084)
T ss_pred             ccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHH
Confidence            99999999999999999999999999999999889853332221 11111223345678899999999999999998999


Q ss_pred             HHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceeccee
Q 039882          219 WEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRY  298 (1142)
Q Consensus       219 ~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~p  298 (1142)
                      |+||+++||++++|.+|+||.+|++||++.|+++|+|||+++||+|+|+|||.||+|++||+|||.+|+++|+||||.||
T Consensus       164 ~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rp  243 (1084)
T PLN02959        164 WEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRY  243 (1084)
T ss_pred             HHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEE
Q 039882          299 TIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFE  378 (1142)
Q Consensus       299 v~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~  378 (1142)
                      |+|||+|+|||||||++++++++|++|++|+|++.++++..+..+.+++++|+|||||||||||||||||||+.+|++++
T Consensus       244 v~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~  323 (1084)
T PLN02959        244 TIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYE  323 (1084)
T ss_pred             eeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEE
Confidence            99999999999999999999999999999999987644444434456678999999999999999999999999999999


Q ss_pred             ecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCCh
Q 039882          379 ISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAP  458 (1142)
Q Consensus       379 ~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~  458 (1142)
                      +++++.||||++++++|+||......++++++.+++|++|+|+.|.||+++.+.+||+|++||++++|||||||||||||
T Consensus       324 ~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~p  403 (1084)
T PLN02959        324 INDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSP  403 (1084)
T ss_pred             ecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCH
Confidence            98789999999999999999876555679999999999999999999998655599999999999999999999999999


Q ss_pred             hhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhccccccccc
Q 039882          459 DDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTM  538 (1142)
Q Consensus       459 ~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~  538 (1142)
                      +||++++||++|++++++|||+++|+.+++++|+|+++++|+++|+++|+++||+||+|+++|+|||+.+|++||++|+|
T Consensus       404 dDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m  483 (1084)
T PLN02959        404 DDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTM  483 (1084)
T ss_pred             HHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEEcccCccceecCchHHHHHHHHHHhcCceeCchh
Q 039882          539 LVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATECLNSMNLYHDEN  618 (1142)
Q Consensus       539 ~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~  618 (1142)
                      .+|+|+|++|.+||++|+++|++.|+++.+++++.|||||||++|++++++||||+|++++||+++++++++|+|+|+++
T Consensus       484 ~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~  563 (1084)
T PLN02959        484 LVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDET  563 (1084)
T ss_pred             cCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHH
Confidence            99999999999999999999999999987888889999999999999999999999998899999999999999999999


Q ss_pred             hhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEe
Q 039882          619 RHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIF  698 (1142)
Q Consensus       619 r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wF  698 (1142)
                      +++|.+||+|++||||||||+||||||||+.|+++|+||+++||++|+++|+++.++.+|.+.+.+.++++++|||||||
T Consensus       564 ~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF  643 (1084)
T PLN02959        564 RHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVF  643 (1084)
T ss_pred             HHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEee
Confidence            99999999999999999999999999999999999999999999999999999876556665445788889999999999


Q ss_pred             eCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCccccccC
Q 039882          699 CGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKST  778 (1142)
Q Consensus       699 ds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~KMSKS~  778 (1142)
                      +||++|.+++||.++++.++++|++|||+|+|++|+||++|||+|++++|+++++..|||++|++||||+.+|+|||||+
T Consensus       644 ~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSk  723 (1084)
T PLN02959        644 CGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKST  723 (1084)
T ss_pred             cCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccC
Confidence            99999998899999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhHHHHHHH
Q 039882          779 GNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEI  858 (1142)
Q Consensus       779 GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l  858 (1142)
                      ||||+|.++|++||||++||||++++++.+|++|+++.++.++.++.|+++|+.+++.....+........+|+|+++++
T Consensus       724 GNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l  803 (1084)
T PLN02959        724 GNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEI  803 (1084)
T ss_pred             CCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHH
Confidence            99999999999999999999999998899999999999999999999998887766542112222222257899999999


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCCccchHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcCCCC
Q 039882          859 NIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGAGGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGF  938 (1142)
Q Consensus       859 ~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~~~~~~~~l~~~l~~l~~lLaPi~P~~aEeiw~~L~~~~~s  938 (1142)
                      +.++++++++|++|+|++|++.++|+|...+++|+.++.....++.+|+++|+.+++||||||||+|||||+.|++..+|
T Consensus       804 ~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~~~~~~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~s  883 (1084)
T PLN02959        804 NIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRLSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGF  883 (1084)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCe
Confidence            99999999999999999999998999999999999876433356789999999999999999999999999998766789


Q ss_pred             eEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecCCChhhHHHHHHHH
Q 039882          939 AVKAGWPTYGTPDLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAECLRIL 1018 (1142)
Q Consensus       939 v~~~~wP~~~~~d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~~~~~w~~~~~~~l 1018 (1142)
                      |+++.||.++..|+.++..++++++++.+||++++++.+..|++|.++. .......|.+|+||||++||+||++++++|
T Consensus       884 I~~~~wP~~~~~d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~-~~~~~~~~~~v~IyVA~~yp~Wq~~~l~~l  962 (1084)
T PLN02959        884 AVTAGWPVAGEPDLTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGA-PVTLPEKKLAGLIYVAEKYDGWKEECLRIL  962 (1084)
T ss_pred             EEecCCCCCCccCHHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCCCC-CcccccCcceEEEEECCCChHHHHHHHHHH
Confidence            9999999987668888888999999999999999998877776543221 101123467799999999999999999999


Q ss_pred             HhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHHHHHHHHHHHHHHh
Q 039882         1019 QSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEIEVLQENLDLIKRQ 1098 (1142)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~~vL~~~~~yi~~~ 1098 (1142)
                      ++.++.++++|++++++|.+++++.+.++...|+.+|++|+|++++++++++.|+++|.+.++|||.++|+++++||+++
T Consensus       963 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~l~~~~~~~~~~ 1042 (1084)
T PLN02959        963 QSKFDSQSRTFAPDAEILEALKESSVGQEANFKQVQKLCMPFVKFKKDEAIAVGPQALDLKLPFDEIEVLQENLELIKRQ 1042 (1084)
T ss_pred             HHHHhhcccccCCHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHh
Confidence            99887766788888999998865555555567889999999999999889889999999999999999999999999999


Q ss_pred             cCCceEEEEecCCcccccccCccccccCCCCCCCCCceeEE
Q 039882         1099 LGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIF 1139 (1142)
Q Consensus      1099 l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~ 1139 (1142)
                      ||+++|+|+.++++...++.+...+...++.|+||+|+|+|
T Consensus      1043 ~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 1083 (1084)
T PLN02959       1043 LGLEEVEILSASDPDAVAKAGAHASLLKQNPPSPGNPVAIF 1083 (1084)
T ss_pred             cCCcEEEEEecccccccccccccccccccccCCCCCCeeee
Confidence            99988999988775443332211222457899999999987

>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1142
1wz2_A967 The Crystal Structure Of Leucyl-Trna Synthetase And 1e-134
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 1e-131
2wfd_A252 Structure Of The Human Cytosolic Leucyl-Trna Synthe 5e-76
3pz6_A311 The Crystal Structure Of Glleurs-Cp1 Length = 311 3e-53
2wfe_A261 Structure Of The Candida Albicans Cytosolic Leucyl- 1e-51
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 1e-09
3ziu_A637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 1e-06
1obh_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-05
2v0c_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-05
1gax_A862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 2e-04
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 3e-04
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure 
Iteration: 1

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 329/1049 (31%), Positives = 505/1049 (48%), Gaps = 134/1049 (12%)
Query: 72   IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAA 131
            IE K    W E+ +F     ++P      +KF+    FPY++G+LH+GHA +++  +  A
Sbjct: 9    IEEKWQKRWLEAKIFEPNIRDKPKE----KKFYITVAFPYLSGHLHVGHARTYTIPDVIA 64
Query: 132  AYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLXXXXXXXXXXXXXXXD 191
             + R++G NVL P  +H TG PI      +A  IK                        D
Sbjct: 65   RFKRMQGYNVLFPMAWHITGSPIVG----IAERIKN----------------------RD 98
Query: 192  PNGGAPLDKFXXXXXXXXXXXGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKE 251
            P                          W     + + +  +  F++P   + +F   AKE
Sbjct: 99   PKT-----------------------IWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKE 135
Query: 252  DLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQPCAD 311
                 G   DW R F TT + P F  F++WQ  KLK  G I+K      + P+   P  D
Sbjct: 136  TFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
Query: 312  HDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPD 371
            HD   GE V   DY +IK E+ +          G+ +YL AATLRPET+YG TN WV P+
Sbjct: 196  HDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPN 246
Query: 372  GKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLS 428
              Y   ++   D     IV++ AA  L++Q+     ++   + E  G  LIG  +++P+S
Sbjct: 247  ATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVS 301
Query: 429  FNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFE 488
             +EVI  LP   +  D  TG+V SVP+ AP D++AL DLK +     K+ +    V    
Sbjct: 302  GDEVI-ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENIT 360
Query: 489  VIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAGKKV 548
             I +I +  +GD  A      L IKSQ +K+KL +A +  Y   + +G   V  + GK V
Sbjct: 361  YISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPV 420
Query: 549  QDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVALT-DQWYITYGEEEWKRLATE 606
            Q+ K  I  +++E G A IMY   EK V+SR G+  V+ +  DQW+I YG  EWK  A +
Sbjct: 421  QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARK 480
Query: 607  CLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYT 666
             L  M +  +  R  FE  + WL++ AC+R  GLGT +PWDP++++ESLSDSTIYMAYYT
Sbjct: 481  ALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 667  VAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC-------GGPYPESSNIPSSILNRMKQ 719
            ++  ++K        G ++P ++T E +++IF             + + IP+ I++ MK+
Sbjct: 541  ISRHINKL----RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKE 596
Query: 720  EFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTG 779
            EFEYWYP D R SGKDLI NHLTF I+NH AI  + HWP+G   NG   L  +KMSKS G
Sbjct: 597  EFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKG 656
Query: 780  NFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--V 837
            N      AIEE  AD  R  +    +   D    FD     + +L K+I    E+++   
Sbjct: 657  NVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGKLRKQIERFYELISQFA 712
Query: 838  ESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY-RLSC 896
            E  ++        DR   + +N A++ T    + +  R A++  FY +      Y R + 
Sbjct: 713  EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772
Query: 897  GAGGLNRDLVWRFM-DVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTPDLILK 955
            G     +  V R + DV  RL+ P  PH  E +W   L  +GF   A W     P+ + +
Sbjct: 773  GRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEK-LGGEGFVSLAKW-----PEPVEE 826
Query: 956  SANKYLQDSIVLMRKLLQ--KQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKAE 1013
              N+ ++     +R +++  K+I+   K            E+  +  +Y  E    WK +
Sbjct: 827  WWNETIEAEEEFIRSVMEDIKEIIEVAK-----------IENAKRAYIYTAED---WKWK 872
Query: 1014 CLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGP 1073
               ++  K D KS        + E +++S + +    K+  K+            K I  
Sbjct: 873  VAEVVSEKRDFKS-------SMEELMKDSEIRKHG--KEVAKIVQ----------KLIKE 913
Query: 1074 QALDLKLPFGEIEVLQENLDLIKRQLGLE 1102
            +  D+K    E + L+E  + ++++LG+E
Sbjct: 914  RTFDVKR-INEEKALREAKEFMEKELGIE 941
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 252 Back     alignment and structure
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1 Length = 311 Back     alignment and structure
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 261 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1142
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 0.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 0.0
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 1e-102
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 5e-93
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 8e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 1e-08
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 1e-08
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 1e-08
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 5e-05
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 2e-08
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 3e-08
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 3e-08
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 6e-04
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 5e-08
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 3e-04
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 6e-08
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 1e-07
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 5e-07
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 6e-07
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 1e-06
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 2e-06
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 7e-06
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 5e-05
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 8e-05
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-04
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 3e-04
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
 Score =  905 bits (2340), Expect = 0.0
 Identities = 317/1088 (29%), Positives = 503/1088 (46%), Gaps = 143/1088 (13%)

Query: 69   LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLE 128
               IE K    W E+ +F     ++P      +KF+    FPY++G+LH+GHA +++  +
Sbjct: 6    FKAIEEKWQKRWLEAKIFEPNIRDKP----KEKKFYITVAFPYLSGHLHVGHARTYTIPD 61

Query: 129  FAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEE 188
              A + R++G NVL P  +H TG PI   A+++                           
Sbjct: 62   VIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDP---------------------- 99

Query: 189  AEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPL 248
                                          W     + + +  +  F++P   + +F   
Sbjct: 100  ---------------------------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKA 132

Query: 249  AKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPLDDQP 308
            AKE     G   DW R F TT + P F  F++WQ  KLK  G I+K      + P+   P
Sbjct: 133  AKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192

Query: 309  CADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWV 368
              DHD   GE V   DY +IK E+ +          G+ +YL AATLRPET+YG TN WV
Sbjct: 193  LGDHDLMEGEDVPILDYIIIKFELRE---------NGEVIYLPAATLRPETVYGVTNMWV 243

Query: 369  LPDGKYGAFEISETD---VLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKS 425
             P+  Y   ++   D     IV++ AA  L++Q+     ++   + E  G  LIG  +++
Sbjct: 244  NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRN 298

Query: 426  PLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVL 485
            P+S +EV   LP   +  D  TG+V SVP+ AP D++AL DLK +     K+ +    V 
Sbjct: 299  PVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVE 357

Query: 486  PFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVGDFAG 545
                I +I +  +GD  A      L IKSQ +K+KL +A +  Y   + +G   V  + G
Sbjct: 358  NITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEG 417

Query: 546  KKVQDAKPLIRSKLIETGEA-IMYSEPEKRVMSRSGDECVVAL-TDQWYITYGEEEWKRL 603
            K VQ+ K  I  +++E G A IMY   EK V+SR G+  V+ +  DQW+I YG  EWK  
Sbjct: 418  KPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477

Query: 604  ATECLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMA 663
            A + L  M +  +  R  FE  + WL++ AC+R  GLGT +PWDP++++ESLSDSTIYMA
Sbjct: 478  ARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMA 537

Query: 664  YYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCG-------GPYPESSNIPSSILNR 716
            YYT++  ++K        G ++P ++T E +++IF             + + IP+ I++ 
Sbjct: 538  YYTISRHINKLRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHE 593

Query: 717  MKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSK 776
            MK+EFEYWYP D R SGKDLI NHLTF I+NH AI  + HWP+G   NG   L  +KMSK
Sbjct: 594  MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSK 653

Query: 777  STGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA 836
            S GN      AIEE  AD  R  +    +   D ++          ++ +    + +   
Sbjct: 654  SKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF-- 711

Query: 837  VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSC 896
             E  ++        DR   + +N A++ T    + +  R A++  FY +      Y    
Sbjct: 712  AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT 771

Query: 897  GA--GGLNRDLVWRFMDVQTRLITPICPHYAEYVWRVILKKDGFAVKAGWPTYGTP--DL 952
                    R ++    DV  RL+ P  PH  E +W   L  +GF   A WP       + 
Sbjct: 772  EGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEK-LGGEGFVSLAKWPEPVEEWWNE 830

Query: 953  ILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNEQFDGWKA 1012
             +++  ++++  +  ++++++     +K  N K            +  +Y  E    WK 
Sbjct: 831  TIEAEEEFIRSVMEDIKEIIEV----AKIENAK------------RAYIYTAED---WKW 871

Query: 1013 ECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIG 1072
            +   ++  K D KS        + E +++S + +  + K+  K+    ++ +  + K   
Sbjct: 872  KVAEVVSEKRDFKS-------SMEELMKDSEIRK--HGKEVAKIVQKLIKERTFDVK--- 919

Query: 1073 PQALDLKLPFGEIEVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSP 1132
                       E + L+E  + ++++LG+ E+ I    D     K              P
Sbjct: 920  --------RINEEKALREAKEFMEKELGI-EIIINPTEDKGGKKKQ-----------AMP 959

Query: 1133 GNPTAIFL 1140
              P AIF+
Sbjct: 960  LKP-AIFI 966
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1142
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 100.0
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 100.0
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 100.0
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 99.98
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.98
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 99.96
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 99.96
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 99.95
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.87
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.81
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.76
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.76
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.37
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 97.24
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 97.2
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 97.08
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 97.03
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 97.02
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 96.84
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 96.74
2hz7_A851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 96.72
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 96.58
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 96.34
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 96.29
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 95.98
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 95.44
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 95.4
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 95.34
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 95.32
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 95.3
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 95.06
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 95.06
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 94.88
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 94.77
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 94.75
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 94.61
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 94.6
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 94.34
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 93.92
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 93.85
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 93.84
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 93.54
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 92.75
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 91.88
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 91.33
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 91.09
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.97
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 90.61
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 90.22
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 90.2
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 89.72
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 88.93
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 88.41
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 88.34
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 88.27
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 88.1
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 87.73
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 86.92
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 86.86
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 86.85
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 86.73
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 86.55
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 86.23
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 85.71
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 84.99
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 84.07
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 81.29
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 80.52
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
Probab=100.00  E-value=4.3e-178  Score=1704.18  Aligned_cols=947  Identities=32%  Similarity=0.573  Sum_probs=811.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhHHHHHHHHHHHcCCceeec
Q 039882           65 RRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLP  144 (1142)
Q Consensus        65 ~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~~D~i~Ry~rm~G~~Vl~~  144 (1142)
                      +.+++.++|++||++|+++++|+.+.+.+.+    +++|++++|||||||.|||||++|++++|+++||+||+||+|+||
T Consensus         2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~----~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~   77 (967)
T 1wz2_A            2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPK----EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP   77 (967)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTTSCCGGGSCG----GGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCcccCccccCC----CCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence            3568899999999999999999987752211    489999999999999999999999999999999999999999999


Q ss_pred             ccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcchhhHHHHHHh
Q 039882          145 FGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKSKAAAKSGVQMYQWEIMRS  224 (1142)
Q Consensus       145 ~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~~~  224 (1142)
                      |||||||||||.+|+++++     |.                                            ...++.+.+.
T Consensus        78 ~GwD~~GlPie~~a~~~~~-----~~--------------------------------------------~~~~~~~~~~  108 (967)
T 1wz2_A           78 MAWHITGSPIVGIAERIKN-----RD--------------------------------------------PKTIWIYRDV  108 (967)
T ss_dssp             CCBBCCSSHHHHHHHHHHT-----TC--------------------------------------------HHHHHHHHTT
T ss_pred             CcCCCCCcHHHHHHHHhhc-----cc--------------------------------------------hhHHHHHHHh
Confidence            9999999999999986432     21                                            0123344445


Q ss_pred             cCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHHHHcCcceecceeeeccCC
Q 039882          225 FGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKLKSMGKIIKDVRYTIYSPL  304 (1142)
Q Consensus       225 ~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L~~~GlIy~g~~pv~w~p~  304 (1142)
                      +|+++++|++|.+|++|+++|.+.|++||++||+++||+|+|+|||.||.|+++++|+|.+|+++||||+|.+||+|||.
T Consensus       109 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~  188 (967)
T 1wz2_A          109 YKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPV  188 (967)
T ss_dssp             SCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCC
Confidence            69999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             CCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEEEECCCCceeEEEecC---
Q 039882          305 DDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNAWVLPDGKYGAFEISE---  381 (1142)
Q Consensus       305 ~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai~V~P~~~Y~~~~~~~---  381 (1142)
                      |+|+||||||++++++.++.|++|+|++.+.         +.+.+|+||||||||||||+||||||+++|+.+++++   
T Consensus       189 ~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~---------~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~  259 (967)
T 1wz2_A          189 VGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDK  259 (967)
T ss_dssp             TSCBCCSSSCSSCCCCCEECCEEEEEECCCS---------SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSC
T ss_pred             CCCCcchhhhccCCCceeceeEEEEEEecCC---------CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCc
Confidence            9999999999999999999999999987541         1247999999999999999999999999999999853   


Q ss_pred             CcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCCCCccccCCCCChhhH
Q 039882          382 TDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKGTGIVTSVPSDAPDDY  461 (1142)
Q Consensus       382 ~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~GTGiV~~~Pah~~~Dy  461 (1142)
                      +++||++++++.+++||.     ++++++.+++|++|+|++|.||+++ +.+||++++||++++|||+||+|||||++||
T Consensus       260 ~~~~i~a~~~~~~~~~~~-----~~~~~~~~~~G~~l~G~~~~~P~~~-~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy  333 (967)
T 1wz2_A          260 EETWIVSKEAAYKLSFQD-----REIEVIEEFKGEKLIGKYVRNPVSG-DEVIILPAEFVDPDNATGVVMSVPAHAPFDH  333 (967)
T ss_dssp             EEEEEEEHHHHHHHHHSS-----CEEEEEEECCSSTTSSCEEECSSSS-CEEEEEECSSCCSSSTTSCEEECTTSCTTTT
T ss_pred             ceeeehHHHHHHHHHhhc-----cCcEEEEEEEchhhcCCEEECCCCC-CceEEEecccccCCCCcccEEeecCCCHHHH
Confidence            289999999999999873     4578999999999999999999984 6899999999999999999999999999999


Q ss_pred             HHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHHhhhcccccccccccc
Q 039882          462 MALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKRLTYLRGFTEGTMLVG  541 (1142)
Q Consensus       462 ~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~~~y~~~f~~g~~~~g  541 (1142)
                      +++++++++++|+++|||+++|+.++++++||+++++|+++++.+|++++|.+|+|..+|++|++.+|+++|++|+|.+|
T Consensus       334 ~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g  413 (967)
T 1wz2_A          334 VALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVP  413 (967)
T ss_dssp             TTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSS
T ss_pred             HHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEecc
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CCCCcchHhhhHHHHHHHHHcCCeeeeeccC-ccccccCCCeEEEc-ccCccceecCchHHHHHHHHHHhcCceeCchhh
Q 039882          542 DFAGKKVQDAKPLIRSKLIETGEAIMYSEPE-KRVMSRSGDECVVA-LTDQWYITYGEEEWKRLATECLNSMNLYHDENR  619 (1142)
Q Consensus       542 ~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~-~~v~~Rsg~~~i~~-~~~QWFi~~~~~~~k~~~~~~l~~v~~~P~~~r  619 (1142)
                      +|+|+.|.+|++.|+++|++.|.++..+++. +|+|||||+||+++ +++||||+|++..||+++++++++++|+|++++
T Consensus       414 ~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~  493 (967)
T 1wz2_A          414 PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR  493 (967)
T ss_dssp             SSCSSBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTH
T ss_pred             CcCCcCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCcccc
Confidence            9999999999999999999999999877765 69999999999999 699999999977799999999999999999999


Q ss_pred             hhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcccCcccCCCCCCCCCCCCCccceEEEee
Q 039882          620 HGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFC  699 (1142)
Q Consensus       620 ~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~~~~~~g~~~~~~~~e~~~~dv~D~wFd  699 (1142)
                      ++|.+|++|++||||||||+||||||||+.|++++++|+++|+++|+++|.++..  .+.  +.+.++++.+++||+||.
T Consensus       494 ~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~--~~~--~g~~~~~l~~~~~d~~~~  569 (967)
T 1wz2_A          494 AQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKL--RQE--GKLDPEKLTPEFFDYIFL  569 (967)
T ss_dssp             HHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHH--HHT--TCCCGGGCCHHHHHHTTT
T ss_pred             chHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHH--HHh--cCCChHHcCcccceeecc
Confidence            9999999999999999999999999998889999999999999999998887521  000  114566778899999997


Q ss_pred             C----CCC---CCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHHHHHhcCCCCCcEEEEeeEEeecCc
Q 039882          700 G----GPY---PESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSE  772 (1142)
Q Consensus       700 s----~~~---~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~~al~~~~~~Pk~v~~hG~vl~~G~  772 (1142)
                      +    |..   +..+|+|.+.+..++++|++|||+|+|++|+||+++|+.+++++|.++++..+||+++++||||+.+|+
T Consensus       570 ~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~  649 (967)
T 1wz2_A          570 EEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQ  649 (967)
T ss_dssp             SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSS
T ss_pred             CccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCE
Confidence            5    111   113578887777778899999999999999999999999999999999998899999999999999999


Q ss_pred             cccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCCh
Q 039882          773 KMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG---ILRLTKEIAWMEEVLAVESSLRTGPPSTY  849 (1142)
Q Consensus       773 KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~---~~kl~n~~~~~~~~~~~~~~~~~~~~~~~  849 (1142)
                      |||||+||||+|.++|++||||++||||++++++.+|++|+++.++..   +++++|+++++.   .. . .+.......
T Consensus       650 KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~---~~-~-~~~~~~~~~  724 (967)
T 1wz2_A          650 KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFA---EY-E-VKGNVELKD  724 (967)
T ss_dssp             CCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHH---SS-C-CCCCCCCCH
T ss_pred             EccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHh---cC-C-CCCcccCCH
Confidence            999999999999999999999999999998778999999999988754   556666655442   21 1 111112257


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhhHHHHHhcCC--ccchHHHHHHHHHHHHHHhhchhhHHHHH
Q 039882          850 ADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEYRLSCGA--GGLNRDLVWRFMDVQTRLITPICPHYAEY  927 (1142)
Q Consensus       850 ~D~~il~~l~~~i~~v~~~ye~~~f~~a~~~~~~~l~~~~~~Y~~~~~~--~~~~~~~l~~~l~~l~~lLaPi~P~~aEe  927 (1142)
                      .|+|++++++.++++++++|++|+|+.|++.+++.+.+.+|+|++.+++  +..++.+++++|+.+++||||||||+|||
T Consensus       725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEe  804 (967)
T 1wz2_A          725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEE  804 (967)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            8999999999999999999999999999987666788889999988763  23467799999999999999999999999


Q ss_pred             HHHHhhcCCCCeEeccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcCccCCCcEEEEEecC
Q 039882          928 VWRVILKKDGFAVKAGWPTYGTP--DLILKSANKYLQDSIVLMRKLLQKQILGSKKANKKGAPVATLTEDKLKGLVYVNE 1005 (1142)
Q Consensus       928 iw~~L~~~~~sv~~~~wP~~~~~--d~~l~~~~~~~~~~i~~iR~~~~~~~e~~rk~k~~~~~~~~~~~~~~~v~i~va~ 1005 (1142)
                      ||+.| +..+||+++.||++++.  |+.++..+++++++++++|+++....         ++       .|++++||++.
T Consensus       805 iw~~L-~~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~~---------~~-------~p~~~~i~~~~  867 (967)
T 1wz2_A          805 LWEKL-GGEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK---------IE-------NAKRAYIYTAE  867 (967)
T ss_dssp             HHHHS-SCCSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTSC---------CC-------CSBEEEECCCT
T ss_pred             HHHhc-CCCCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhC---------CC-------CCCeEEEEECC
Confidence            99987 55689999999998864  89999999999999999998886542         11       46899999884


Q ss_pred             CChhhHHHHHHHHHhhhhccCCCCCCcHHHHHHhhcccccccchhhHHHhHHhHHHHHhHHHHhhcChhhhccCCCCCHH
Q 039882         1006 QFDGWKAECLRILQSKFDSKSRTFAPDGEILEALQNSSVGQASNFKQTQKLCMPFLRFKKDEAKAIGPQALDLKLPFGEI 1085 (1142)
Q Consensus      1006 ~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~m~f~~~~~~~~~~~g~~al~~~~~fdE~ 1085 (1142)
                         +|+.++++.+.+..        ++++++..+     +.++.+++.+|++|+|++.+++      .+++ ..++|||.
T Consensus       868 ---~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~e~  924 (967)
T 1wz2_A          868 ---DWKWKVAEVVSEKR--------DFKSSMEEL-----MKDSEIRKHGKEVAKIVQKLIK------ERTF-DVKRINEE  924 (967)
T ss_dssp             ---TTTTTTHHHHTTTC--------SSSHHHHHH-----HTSTTTTTTGGGTTHHHHHHTT------CCCC-CCCTTHHH
T ss_pred             ---HHHHHHHHHHHhcc--------ChHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhh------cccc-ccCCCCHH
Confidence               68888877765411        234566544     2356678889999999999876      2333 44699999


Q ss_pred             HHHHHHHHHHHHhcCCceEEEEecCCcccccccCccccccCCCCCCCCCceeEEE
Q 039882         1086 EVLQENLDLIKRQLGLEEVEILSATDPDALSKAGSLSSLLKQNPPSPGNPTAIFL 1140 (1142)
Q Consensus      1086 ~vL~~~~~yi~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~a~PgkP~i~~~ 1140 (1142)
                      ++|+++++||++++|+ +|+|..+++  +.         .+++.|+||+|+|+|+
T Consensus       925 ~~l~~~~~~~~~~~~~-~v~v~~~~~--~~---------~~~~~a~p~~p~i~~~  967 (967)
T 1wz2_A          925 KALREAKEFMEKELGI-EIIINPTED--KG---------GKKKQAMPLKPAIFIE  967 (967)
T ss_dssp             HHHTTTHHHHHHHHTS-BCCCSCSSC--CS---------SCTTCCBTTBCEEEEC
T ss_pred             HHHHHHHHHHHHhhCc-eEEEEecCC--cc---------cccccCcCCCCeEEeC
Confidence            9999999999999999 688877652  11         2378899999999985
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1142
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 1e-19
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 1e-18
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 2e-13
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 5e-18
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 3e-10
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 8e-17
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 3e-16
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 8e-13
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 1e-10
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 3e-12
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 1e-10
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 3e-10
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-10
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 1e-09
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-09
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 5e-05
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 91.6 bits (226), Expect = 1e-19
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 71  EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFA 130
            IE+K   +WEE     A+       P    K +    FPY +G LH+GH  +++  +  
Sbjct: 8   AIEAKWQRFWEEKGFMKAKD-----LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVL 62

Query: 131 AAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQF 168
           A + R++G  VL P G+   G+P + +A K     K +
Sbjct: 63  ARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDW 100
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1142
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.96
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.96
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.95
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.92
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.85
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.83
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.77
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.74
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.65
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.13
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 98.7
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 98.63
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 98.48
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 98.1
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 97.44
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 97.17
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 96.54
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 96.4
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 95.27
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 93.61
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 92.99
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 91.46
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 88.9
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 85.45
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.6e-83  Score=763.82  Aligned_cols=428  Identities=20%  Similarity=0.299  Sum_probs=346.9

Q ss_pred             cChhhhcccccccCCCCCCCCChHHHHHHHHHHHHhCCccccCCCCCCCCCCCCCcEEEeCCCCCCCCcCchhhhhhhhH
Q 039882           47 HSFSQFHDMATESGKSFARRDRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSK  126 (1142)
Q Consensus        47 ~~~~~~~~~~~~~~~~f~~r~~l~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~~kf~i~~ppPy~nG~LHiGHa~~~~~  126 (1142)
                      |.|++|++||   +|.||||++|+++|++||++|+++++|++..+.+++    +++|+|++|||||||.||||||+|+++
T Consensus         1 ~~~~~tl~lp---~t~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~----~~~f~~~~~pPy~nG~lHiGH~~~~~~   73 (450)
T d1ffya3           1 MDYEKTLLMP---KTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKG----NETFILHDGPPYANGNLHMGHALNKIL   73 (450)
T ss_dssp             CCSGGGSCCC---CCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTT----SCBCCEECCCCBSSSCCCHHHHHHHHH
T ss_pred             CCcccccCCC---CCCCCCCCChHHHHHHHHHHHHHCCCccccccccCC----CCcEEEecCCCCCCCchhhhHHHHHHH
Confidence            5799999999   999999999999999999999999999875443322    589999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCceeecccCCccCchhHHHHHHHHHHHHHcCCCCCCcccccccCCCCCCCCCCCCCCCChhhHHHHHH
Q 039882          127 LEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQFGNPPVFLKEAEKEESPQPEEAEDPNGGAPLDKFKSKKS  206 (1142)
Q Consensus       127 ~D~i~Ry~rm~G~~Vl~~~G~D~~GlPIe~~a~k~~~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (1142)
                      +||++||+||+||+|+|++||||||+|||.+|++       .|..                     +++++++.+.+.| 
T Consensus        74 ~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~-------~~~~---------------------~~~~~~~~~~~~~-  124 (450)
T d1ffya3          74 KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTK-------KGVD---------------------RKKMSTAEFREKC-  124 (450)
T ss_dssp             HHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHH-------HTCC---------------------STTTCHHHHHHHH-
T ss_pred             HHHHHHHHHhcCCccccccccccCCcHHHHHHHh-------hCCc---------------------cccccHHHHhhhc-
Confidence            9999999999999999999999999999998865       2322                     1234445555544 


Q ss_pred             HHHHhhcchhhHHHHHHhcCCChhHHhhhcchhhhhhcCchHHHHHHHHcccccccccceEecCCChhhHHHHHHHHHHH
Q 039882          207 KAAAKSGVQMYQWEIMRSFGLSDSEISEFQEPEKWLNFFPPLAKEDLKAFGLGCDWRRSFVTTEINPFFDSFVQWQMRKL  286 (1142)
Q Consensus       207 ~~~~k~~~~~~~~~i~~~~~i~~~~i~~f~~p~~w~~~~~~~~~~~~~~lG~~~DW~r~y~T~d~np~y~~~v~~~F~~L  286 (1142)
                                                      .+|++++...++++|++||+++||+++|.|++  |.|.++++|+|.+|
T Consensus       125 --------------------------------~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~--~~~~~~v~~~f~~l  170 (450)
T d1ffya3         125 --------------------------------KEFALEQIELQKKDFRRLGVRGDFNDPYITLK--PEYEAAQIRIFGEM  170 (450)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHTTTCCSCTTSCEETTS--HHHHHHHHHHHHHH
T ss_pred             --------------------------------chhhhhhhhhHHHHHHHHhhhccccccccccc--HHHHHHHHHHHHHH
Confidence                                            45555566788999999999999999999998  99999999999999


Q ss_pred             HHcCcceecceeeeccCCCCccccccccccCCccccccceeEeeeccCCCCCCcccCCCCceEEEEeecCCCccccCcEE
Q 039882          287 KSMGKIIKDVRYTIYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVLQPFPAKFGPLEGKKVYLAAATLRPETMYGQTNA  366 (1142)
Q Consensus       287 ~~~GlIy~g~~pv~w~p~~~t~lad~ev~~~e~~~~~~y~~ikf~~~~~~~~~~~~l~~~~~~l~i~TtrPeTl~g~~ai  366 (1142)
                      +++|+||+|.+||+|||+|+|+++++|++                                                   
T Consensus       171 ~~~G~iy~~~~~v~~~p~~~~~~~~~e~~---------------------------------------------------  199 (450)
T d1ffya3         171 ADKGLIYKGKKPVYWSPSSESSLAEAEIE---------------------------------------------------  199 (450)
T ss_dssp             HHTTCEEEEEEEEEEETTTTEECCGGGEE---------------------------------------------------
T ss_pred             HHcCCeeccccccccccccCccccccccc---------------------------------------------------
Confidence            99999999999999999999876653310                                                   


Q ss_pred             EECCCCceeEEEecCCcEEEEehHHHHhhhhhccccCCCCCeeeEeEecceecCCeEecCCCCCceEEEccCCccccCCC
Q 039882          367 WVLPDGKYGAFEISETDVLIVTERAALNLAYQNFSRIPKKPTCLVELTGYDLIGLPLKSPLSFNEVIYALPMLTILTDKG  446 (1142)
Q Consensus       367 ~V~P~~~Y~~~~~~~~e~~i~~~~~~~~l~~q~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~v~il~~~~V~~~~G  446 (1142)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (450)
T d1ffya3         200 --------------------------------------------------------------------------------  199 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCChhhHHHHhhhccChhHHHhhCCCccccCCcccceeecCCCCCCchhhhhhhhhhccchhhHHHHHHHHH
Q 039882          447 TGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIINIPEFGDKSAERVCTDLKIKSQNEKDKLAEAKR  526 (1142)
Q Consensus       447 TGiV~~~Pah~~~Dy~~~~~l~~~~~~~~k~gl~~~~~~~~~~~~vi~~~~~G~~~a~~~~~~~~i~s~~d~~~l~ea~~  526 (1142)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (450)
T d1ffya3         200 --------------------------------------------------------------------------------  199 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccccccccccccCCCCcchHhhhHHHHHHHHHcCCeeeeeccCccccccCCCeEEEcccCccceecCchHHHHHHHH
Q 039882          527 LTYLRGFTEGTMLVGDFAGKKVQDAKPLIRSKLIETGEAIMYSEPEKRVMSRSGDECVVALTDQWYITYGEEEWKRLATE  606 (1142)
Q Consensus       527 ~~y~~~f~~g~~~~g~~~G~~v~ea~~~I~~~L~~~g~l~~~~e~~~~v~~Rsg~~~i~~~~~QWFi~~~~~~~k~~~~~  606 (1142)
                                                                    +|.|+||++|++.+.++|||+++.  .+++.+++
T Consensus       200 ----------------------------------------------~~~~~r~~~~~~~~~~~qwf~~~~--~~~~~~~~  231 (450)
T d1ffya3         200 ----------------------------------------------YPHDWRTKKPVIFRATPQWFASIS--KVRQDILD  231 (450)
T ss_dssp             ----------------------------------------------EEEETTTCCBCEEEEEEEEEECHH--HHHHHHHH
T ss_pred             ----------------------------------------------ccccccccCCceeeccccceeccc--cccccchh
Confidence                                                          023678888889999999999995  79999999


Q ss_pred             HHhcCceeCchhhhhHHHhhhcCCceeeecccCCCccCCCCCceeeccCCCcceeeehhhhhhhcc---c----------
Q 039882          607 CLNSMNLYHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLH---K----------  673 (1142)
Q Consensus       607 ~l~~v~~~P~~~r~~~~~~i~~l~DW~ISRqr~WG~PIP~d~~~~iesl~d~~iy~~~~ti~~~l~---~----------  673 (1142)
                      .+..+++.|+..+.++..|+++++||||||||+||+|||.   +.++..   .++.....+.++..   .          
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~Dw~iSRqr~WG~piP~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T d1ffya3         232 AIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV---FYAENG---EIIMTKETVNHVADLFAEHGSNIWFERE  305 (450)
T ss_dssp             HHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCC---EECTTS---CEECCHHHHHHHHHHHHHHCTHHHHHSC
T ss_pred             hcccccccccccceeeeccccCccchheeeecccccCcce---eecCCC---CEecchhhhHHHHHhhhhcCcccccccc
Confidence            9999999999999999999999999999999999999994   222211   11111111100000   0          


Q ss_pred             -Ccc--cCC-CCCC-CCCCCCCccceEEEeeCCCCCCCCCCChhhHhhhHHhhhhcCCcceEEeecccchhhHHHHHHHH
Q 039882          674 -GDM--YGS-TTGS-IEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNH  748 (1142)
Q Consensus       674 -~~~--~g~-~~~~-~~~e~~~~dv~D~wFds~~~~~~~~~~~~~l~~~~~ef~~~~P~Dl~~~G~D~ir~hl~~~l~~~  748 (1142)
                       .+.  .+. .++. ...-....||+|+||+|+.++....         ...+..+||+|++++|+||+|+||.++++.+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~---------~~~~~~~~P~d~~~~G~Di~r~w~~~~~~~~  376 (450)
T d1ffya3         306 AKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVL---------ETRPELSFPADMYLEGSDQYRGWFNSSITTS  376 (450)
T ss_dssp             HHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTT---------TTSTTCCSSBSEEEEEGGGGTTHHHHHHHHH
T ss_pred             ccccccccccccCCCCCcceeeeeeecccccccccccccc---------cccccccCCCcccccCcchhhHHHHHHHHHH
Confidence             000  000 0000 0001125799999999987654210         1223567999999999999999999999999


Q ss_pred             HHHhcCCCCCcEEEEeeEEe-ecCccccccCCCcCChHHHHHHcChhhhhhhhhccCCCCCCccchHHHHHHH
Q 039882          749 TAIMSQRHWPRGFRCNGHIM-LNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTG  820 (1142)
Q Consensus       749 ~al~~~~~~Pk~v~~hG~vl-~~G~KMSKS~GNvI~p~~~i~~yGaDalRl~la~~~~~~~D~~fs~~~~~~~  820 (1142)
                      .++.+..|| ++|++||||+ .+|+|||||+||+|+|.++|++||||+|||||+++ ++++|++|+++.+++.
T Consensus       377 ~~~~~~~Pf-k~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~-~~~~D~~fs~~~l~~~  447 (450)
T d1ffya3         377 VATRGVSPY-KFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST-DYLADVRISDEILKQT  447 (450)
T ss_dssp             HHHHSSCSB-SEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS-CTTSCEECCHHHHHHH
T ss_pred             HHhcCCCCc-ceEEEcceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcC-CCCCCcCcCHHHHHHh
Confidence            999999887 9999999998 79999999999999999999999999999999976 6889999999887654
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure