Citrus Sinensis ID: 042283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHccEEEccccccccEEEEcccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHccEEEccccccccEEEEcccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
dkygtigdargwGFMLGVEFvtdsqlrkaETLDVMDKMKQMGVLigkggfygnvfriapplcftkedaNYLVDVMDCSMTKK
Flexible Loop (DISEMBL)
dkygtigdargwgfmLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK
Low Complexity Region (SEG)
DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK
Disordered region (IsUnstruct)
****TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC*****
Disordered Region (DISOPRED)
DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK*
Disordered Region (DISEMBL)
DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK
Disordered Region (DISPRO)
*KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9SR86	481	Alanine--glyoxylate amino	yes	no	0.987	0.168	0.690	1e-28
Q94AL9	477	Alanine--glyoxylate amino	no	no	0.987	0.169	0.630	1e-25
Q940M2	476	Alanine--glyoxylate amino	no	no	0.975	0.168	0.481	2e-20
Q5E9S4	497	Ethanolamine-phosphate ph	yes	no	0.963	0.158	0.414	3e-12
Q17QF0	514	Alanine--glyoxylate amino	no	no	0.987	0.157	0.364	4e-12
Q8BWU8	499	Ethanolamine-phosphate ph	yes	no	0.963	0.158	0.414	5e-12
Q5RFA3	514	Alanine--glyoxylate amino	yes	no	0.987	0.157	0.352	5e-12
Q9BYV1	514	Alanine--glyoxylate amino	yes	no	0.987	0.157	0.352	5e-12
Q3UEG6	513	Alanine--glyoxylate amino	no	no	0.987	0.157	0.352	8e-12
Q8TBG4	499	Ethanolamine-phosphate ph	no	no	0.963	0.158	0.414	1e-11

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +KY  IGD RG G MLGVEFV D  L+   KAETL +MD+MK+MGVL+GKGGFYGNVFRI
Sbjct: 397 NKYELIGDVRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRI 456

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFT  DA++LVDVMD +M+K
Sbjct: 457 TPPLCFTLSDADFLVDVMDHAMSK 480

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 4

>sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G MLGVE V+D +L+    AETL +MD+MK++GVLIGKGG++GNVFRI
Sbjct: 393 EKHEIIGDVRGRGLMLGVELVSDRKLKTPATAETLHIMDQMKELGVLIGKGGYFGNVFRI 452

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTK+DA++LV+ MD SM+K
Sbjct: 453 TPPLCFTKDDADFLVEAMDYSMSK 476

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 65/83 (78%), Gaps = 3/83 (3%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           ++  IGD RG G M+G+E V+D + +   KAET  + ++++++G+L+GKGG +GNVFRI 
Sbjct: 393 RHDIIGDVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLRELGILVGKGGLHGNVFRIK 452

Query: 59  PPLCFTKEDANYLVDVMDCSMTK 81
           PP+CFTK+DA++LVD +D S+++
Sbjct: 453 PPMCFTKDDADFLVDALDYSISR 475

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q5E9S4|AT2L1_BOVIN Ethanolamine-phosphate phospho-lyase OS=Bos taurus GN=AGXT2L1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           K+  IGD RG G  +G++ V D Q R    AE   ++ KMK+  VL+   G + NV +I 
Sbjct: 353 KHTLIGDIRGVGLFIGIDLVKDHQQRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 59  PPLCFTKEDANYLVDVMDCSMT 80
           PP+CFT+EDA ++V+ +D  +T
Sbjct: 413 PPMCFTEEDAKFMVEQLDGILT 434

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
           D++  +GD RG G M+G+E V D + R    + E   +    K MG+LIG+GG +   FR
Sbjct: 423 DEFEIVGDVRGKGLMIGIEMVKDKESRQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFR 482

Query: 57  IAPPLCFTKEDANYLVDVMDCSMTK 81
           IAP +C TK + ++ V+V   ++ +
Sbjct: 483 IAPSMCITKPEVDFAVEVFRSALIQ 507

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           K+  IGD RG G  +G++ V D + R    AE   ++ +MK  GVL+   G + NV +I 
Sbjct: 353 KHPLIGDIRGVGLFIGIDLVKDREKRTPATAEAQHIIYEMKGKGVLLSADGPHRNVLKIK 412

Query: 59  PPLCFTKEDANYLVDVMDCSMT 80
           PP+CFT++DA +LVD +D  +T
Sbjct: 413 PPMCFTEDDAKFLVDHLDGILT 434

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDS----QLRKAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
           D++  +GD RG G M+G+E V D      L + E   + +  K MG+L+G+G  +   FR
Sbjct: 423 DEFEIVGDVRGKGLMIGIEMVQDKISRRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFR 482

Query: 57  IAPPLCFTKEDANYLVDVMDCSMTK 81
           IAP +C TK + ++ V+V   ++T+
Sbjct: 483 IAPSMCITKPEVDFAVEVFRSALTQ 507

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDS----QLRKAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
           D++  +GD RG G M+G+E V D      L + E   + +  K MG+L+G+G  +   FR
Sbjct: 423 DEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFR 482

Query: 57  IAPPLCFTKEDANYLVDVMDCSMTK 81
           IAP +C TK + ++ V+V   ++T+
Sbjct: 483 IAPSMCITKPEVDFAVEVFRSALTQ 507

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q3UEG6|AGT2_MOUSE Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTD----SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
           D++  +GD RG G M+G+E V D      L K E   + +  K MG+L+G+GG +   FR
Sbjct: 422 DEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDMGLLVGRGGNFSQTFR 481

Query: 57  IAPPLCFTKEDANYLVDVMDCSMTK 81
           I PP+C TK + ++  +V   ++ +
Sbjct: 482 IVPPMCVTKMEVDFAYEVFRAALIQ 506

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 3/82 (3%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           K+  IGD RG G  +G++ V D   R    AE   ++ KMK+  VL+   G + NV +I 
Sbjct: 353 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 59  PPLCFTKEDANYLVDVMDCSMT 80
           PP+CFT+EDA ++VD +D  +T
Sbjct: 413 PPMCFTEEDAKFMVDQLDRILT 434

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
225434396	478	PREDICTED: alanine--glyoxylate aminotran	0.987	0.169	0.726	3e-28
297745799	436	unnamed protein product [Vitis vinifera]	0.987	0.185	0.726	3e-28
255580991	480	alanine-glyoxylate aminotransferase, put	0.987	0.168	0.690	1e-27
224140569	479	predicted protein [Populus trichocarpa]	0.987	0.169	0.714	1e-27
224091092	477	predicted protein [Populus trichocarpa]	0.987	0.169	0.714	1e-27
449464422	477	PREDICTED: alanine--glyoxylate aminotran	0.987	0.169	0.690	3e-27
15231974	481	PYRIMIDINE 4 [Arabidopsis thaliana] gi|7	0.987	0.168	0.690	5e-27
356506738	475	PREDICTED: alanine--glyoxylate aminotran	0.987	0.170	0.654	1e-26
356496283	475	PREDICTED: alanine--glyoxylate aminotran	0.987	0.170	0.654	2e-26
356568186	482	PREDICTED: alanine--glyoxylate aminotran	0.987	0.168	0.654	2e-26

>gi|225434396|ref|XP_002270785.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G MLGVE VTD QL+   K ETL VMDKMK+MGVLIGKGGFYGNVFRI
Sbjct: 394 EKHEIIGDVRGRGLMLGVELVTDRQLKTPAKVETLHVMDKMKEMGVLIGKGGFYGNVFRI 453

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA++LVDVMD +M++
Sbjct: 454 TPPLCFTKEDADFLVDVMDYTMSR 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745799|emb|CBI15855.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G MLGVE VTD QL+   K ETL VMDKMK+MGVLIGKGGFYGNVFRI
Sbjct: 352 EKHEIIGDVRGRGLMLGVELVTDRQLKTPAKVETLHVMDKMKEMGVLIGKGGFYGNVFRI 411

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA++LVDVMD +M++
Sbjct: 412 TPPLCFTKEDADFLVDVMDYTMSR 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580991|ref|XP_002531313.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis] gi|223529081|gb|EEF31063.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE VTD Q +   KAETL +MD+MK++GVL+GKGGFYGNVFRI
Sbjct: 396 DKYEIIGDVRGKGLMLGVELVTDRQQKTPAKAETLHIMDQMKEIGVLVGKGGFYGNVFRI 455

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTK+DA++LVD MD +M+K
Sbjct: 456 TPPLCFTKQDADFLVDAMDYTMSK 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140569|ref|XP_002323655.1| predicted protein [Populus trichocarpa] gi|222868285|gb|EEF05416.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/84 (71%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE VTD Q +   KAETL VM++MK++GVLIGKGGFYGNVFRI
Sbjct: 395 DKYEIIGDVRGKGLMLGVELVTDRQQKTPAKAETLHVMEQMKELGVLIGKGGFYGNVFRI 454

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA++LVD MD +M+K
Sbjct: 455 TPPLCFTKEDADFLVDAMDYTMSK 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091092|ref|XP_002309175.1| predicted protein [Populus trichocarpa] gi|222855151|gb|EEE92698.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/84 (71%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE VTD Q +   KAETL VM++MK++GVLIGKGGFYGNVFRI
Sbjct: 393 DKYEIIGDVRGKGLMLGVELVTDRQQKTPAKAETLHVMEQMKELGVLIGKGGFYGNVFRI 452

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA++LVD MD S++K
Sbjct: 453 TPPLCFTKEDADFLVDAMDYSISK 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464422|ref|XP_004149928.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Cucumis sativus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DK+  IGD RG G MLGVE VTD +L+   KAETL VMD+MK++GVLIGKGG+YGNVFRI
Sbjct: 393 DKHHIIGDVRGRGLMLGVELVTDRELKTPAKAETLHVMDQMKELGVLIGKGGYYGNVFRI 452

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTK+DA++LVD MD  M+K
Sbjct: 453 TPPLCFTKQDADFLVDAMDYIMSK 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231974|ref|NP_187498.1| PYRIMIDINE 4 [Arabidopsis thaliana] gi|75313797|sp|Q9SR86.1|AGT23_ARATH RecName: Full=Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial; AltName: Full=Beta-alanine-pyruvate aminotransferase 3; Flags: Precursor gi|6403506|gb|AAF07846.1|AC010871_22 putative aminotransferase [Arabidopsis thaliana] gi|20466700|gb|AAM20667.1| putative aminotransferase [Arabidopsis thaliana] gi|110740902|dbj|BAE98547.1| aminotransferase like protein [Arabidopsis thaliana] gi|332641167|gb|AEE74688.1| PYRIMIDINE 4 [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +KY  IGD RG G MLGVEFV D  L+   KAETL +MD+MK+MGVL+GKGGFYGNVFRI
Sbjct: 397 NKYELIGDVRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRI 456

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFT  DA++LVDVMD +M+K
Sbjct: 457 TPPLCFTLSDADFLVDVMDHAMSK 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506738|ref|XP_003522133.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Glycine max]

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE VTD +L+   K ETL VMD+MK++GVLIGKGG+YGNVFRI
Sbjct: 391 DKYELIGDVRGRGLMLGVELVTDRELKTPAKNETLHVMDQMKELGVLIGKGGYYGNVFRI 450

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA+++ D MD ++++
Sbjct: 451 TPPLCFTKEDADFVADAMDLTLSR 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496283|ref|XP_003516998.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Glycine max]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE VTD +L+   K ETL VMD+MK++GVLIGKGG+YGNVFRI
Sbjct: 391 DKYELIGDVRGRGLMLGVELVTDRELKTPAKGETLHVMDQMKELGVLIGKGGYYGNVFRI 450

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA+++ D MD ++++
Sbjct: 451 TPPLCFTKEDADFVADAMDLTLSR 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568186|ref|XP_003552294.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like [Glycine max]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           DKY  IGD RG G MLGVE V+D +L+   ++ETL VMD+MK++GVLIGKGG+YGNVFRI
Sbjct: 398 DKYELIGDVRGRGMMLGVELVSDGKLKTPAQSETLHVMDQMKELGVLIGKGGYYGNVFRI 457

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPLCFTKEDA++LVD MD + ++
Sbjct: 458 TPPLCFTKEDADFLVDAMDYTFSR 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2097623	481	PYD4 "PYRIMIDINE 4" [Arabidops	0.987	0.168	0.690	9.8e-26
TAIR|locus:2135237	476	AGT2 "alanine:glyoxylate amino	0.975	0.168	0.481	1.5e-18
UNIPROTKB|F1NQJ1	479	AGXT2 "Uncharacterized protein	0.987	0.169	0.423	1.7e-14
ZFIN|ZDB-GENE-050913-100	517	agxt2 "alanine-glyoxylate amin	0.926	0.147	0.487	2e-14
WB|WBGene00020382	444	T09B4.8 [Caenorhabditis elegan	0.865	0.159	0.479	3.9e-14
UNIPROTKB|E2QZD7	514	AGXT2 "Uncharacterized protein	0.902	0.143	0.435	5e-13
UNIPROTKB|Q5E9S4	497	AGXT2L1 "Ethanolamine-phosphat	0.963	0.158	0.414	2e-11
UNIPROTKB|F6XN94	397	AGXT2L1 "Uncharacterized prote	0.963	0.198	0.426	2.1e-11
FB|FBgn0037186	518	CG11241 [Drosophila melanogast	0.914	0.144	0.392	2.1e-11
UNIPROTKB|H9KZQ5	415	H9KZQ5 "Uncharacterized protei	0.963	0.190	0.390	2.3e-11

TAIR|locus:2097623 PYD4 "PYRIMIDINE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 9.8e-26, P = 9.8e-26
 Identities = 58/84 (69%), Positives = 68/84 (80%)

Query:     1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
             +KY  IGD RG G MLGVEFV D  L+   KAETL +MD+MK+MGVL+GKGGFYGNVFRI
Sbjct:   397 NKYELIGDVRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRI 456

Query:    58 APPLCFTKEDANYLVDVMDCSMTK 81
              PPLCFT  DA++LVDVMD +M+K
Sbjct:   457 TPPLCFTLSDADFLVDVMDHAMSK 480

GO:0003824 "catalytic activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0007568 "aging" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2135237 AGT2 "alanine:glyoxylate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 40/83 (48%), Positives = 65/83 (78%)

Query:     2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
             ++  IGD RG G M+G+E V+D + +   KAET  + ++++++G+L+GKGG +GNVFRI 
Sbjct:   393 RHDIIGDVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLRELGILVGKGGLHGNVFRIK 452

Query:    59 PPLCFTKEDANYLVDVMDCSMTK 81
             PP+CFTK+DA++LVD +D S+++
Sbjct:   453 PPMCFTKDDADFLVDALDYSISR 475

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019544 "arginine catabolic process to glutamate" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

UNIPROTKB|F1NQJ1 AGXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:     1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLD-VMDKMKQMGVLIGKGGFYGNVFR 56
             DK+  +GD RG G M+G+E VTD   R    AE ++ + +  K MGVLIG+GG Y   FR
Sbjct:   389 DKFEIVGDVRGKGLMIGIEMVTDKDSRHPLPAEEINQIWEDCKDMGVLIGRGGLYNQTFR 448

Query:    57 IAPPLCFTKEDANYLVDVMDCSMTK 81
             I PP+C T++D ++ V+V+  ++ +
Sbjct:   449 IKPPMCITRKDVDFAVEVIHTALER 473

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-050913-100 agxt2 "alanine-glyoxylate aminotransferase 2" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 39/80 (48%), Positives = 49/80 (61%)

Query:     1 DKYGTIGDARGWGFMLGVEFVTDSQLRKA---ETL-DVMDKMKQMGVLIGKGGFYGNVFR 56
             DKY  IGD RG G  +GVE V D   R     E + ++ +  K MGVLIGKGG YG  FR
Sbjct:   428 DKYEIIGDVRGKGLQIGVEMVKDKASRTPLPQEAMNEIFEDTKDMGVLIGKGGLYGQTFR 487

Query:    57 IAPPLCFTKEDANYLVDVMD 76
             I PP+C TK DA++ + V +
Sbjct:   488 IKPPMCITKADADFFLSVFN 507

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00020382 T09B4.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query:     5 TIGDARGWGFMLGVEFVTDS--QLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
             TIGD RG G M+GVE + +    L  A+T  + +  K  G+LIGKGG +GNV RI PP+C
Sbjct:   364 TIGDVRGKGLMIGVELIDEQGKPLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIKPPMC 423

Query:    63 FTKEDANYLVDVM 75
              TK+D ++ VD++
Sbjct:   424 ITKKDVDFAVDII 436

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|E2QZD7 AGXT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query:     1 DKYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
             D++  +GD RG G M+G+E V D   R    + E  ++ D  K+MG+LIGKGG +   FR
Sbjct:   423 DEFEIVGDVRGKGLMIGIEMVKDKMSRQPLPREEVNEIHDNCKRMGLLIGKGGIFAQTFR 482

Query:    57 IAPPLCFTKEDANYLVDV 74
             IAP +C TK D  + V+V
Sbjct:   483 IAPSMCITKPDVKFAVEV 500

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q5E9S4 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 34/82 (41%), Positives = 51/82 (62%)

Query:     2 KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
             K+  IGD RG G  +G++ V D Q R    AE   ++ KMK+  VL+   G + NV +I 
Sbjct:   353 KHTLIGDIRGVGLFIGIDLVKDHQQRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query:    59 PPLCFTKEDANYLVDVMDCSMT 80
             PP+CFT+EDA ++V+ +D  +T
Sbjct:   413 PPMCFTEEDAKFMVEQLDGILT 434

GO:0005739 "mitochondrion" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F6XN94 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 35/82 (42%), Positives = 51/82 (62%)

Query:     2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLD---VMDKMKQMGVLIGKGGFYGNVFRIA 58
             K+  IGD RG G  +G++ V D Q R   T +   V+ KMK+  VL+   G + NV +I 
Sbjct:   251 KHTLIGDIRGIGLFIGIDLVKDRQERTPATDEAQHVIYKMKEKRVLLSADGPHRNVLKIK 310

Query:    59 PPLCFTKEDANYLVDVMDCSMT 80
             PP+CFT+EDA ++VD +D  +T
Sbjct:   311 PPMCFTEEDAKFMVDQLDEILT 332

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

FB|FBgn0037186 CG11241 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query:     2 KYGTIGDARGWGFMLGVEFVTDSQLRKA----ETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
             ++  IGD RG G M+GVE V + + R        LD+ +K K  GVL+G+GG +GNV  +
Sbjct:   419 RFEIIGDVRGKGLMIGVELVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLSM 478

Query:    58 APPLCFTKEDANYLVDVMD 76
              PPLC   ED  + ++ ++
Sbjct:   479 RPPLCLCAEDVEFALETLE 497

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H9KZQ5 H9KZQ5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 32/82 (39%), Positives = 50/82 (60%)

Query:     2 KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
             K+  +GD RG G  +GV+ V D Q R    AE L ++ K+K+  +L+   G Y N+ +  
Sbjct:   330 KHPLVGDIRGVGLFVGVDLVKDQQKRTPATAEALHLIYKLKEQKILLSADGPYRNILKFK 389

Query:    59 PPLCFTKEDANYLVDVMDCSMT 80
             PP+CFT EDA ++V+ +D  +T
Sbjct:   390 PPMCFTMEDAKHVVEKIDVLLT 411

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	5e-22
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-18
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	4e-17
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	5e-16
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-13
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	8e-13
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-11
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	2e-11
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	5e-11
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	3e-10
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	5e-10
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	7e-10
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	9e-10
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	2e-09
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	4e-09
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	7e-09
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	2e-08
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-06
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-06
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	1e-06
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	2e-06
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	3e-06
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	3e-06
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	5e-06
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	6e-06
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	6e-06
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	6e-06
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	2e-05
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	5e-05
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	6e-05
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	6e-05
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	8e-05
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-04
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	2e-04
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	5e-04
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	5e-04
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	7e-04
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	0.001
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	0.002

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 87.3 bits (217), Expect = 5e-22
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+GVE V D   ++        ++ +  + G+L+   G +GNV RI
Sbjct: 362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRI 421

Query: 58  APPLCFTKEDANYLVDVMD 76
            PPL  + E+ +  +D+++
Sbjct: 422 LPPLTISDEELDEGLDILE 440

Length = 447

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETL---DVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  +GD RG G M+G+E V D   +  +      ++    + G+L+   G  GNV R+
Sbjct: 334 EKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRL 391

Query: 58  APPLCFTKEDANYLVDVMD 76
            PPL  T+E+ +  +D +D
Sbjct: 392 LPPLIITEEEIDEGLDALD 410

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score = 73.5 bits (181), Expect = 4e-17
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 1    DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
            D++  IGD RG G  LG+E VTD + +    A    V +  ++ G+LIG  G + NV +I
Sbjct: 927  DRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKI 986

Query: 58   APPLCFTKEDANYLVDVMD 76
             PPL F++ DA++L++V+D
Sbjct: 987  RPPLIFSRADADHLLEVLD 1005

Length = 1013

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQ-LRKA--ETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           D++  IG   G G  LGVE V D Q L  A  ET  + D++ ++GV++   G + N+ +I
Sbjct: 887 DRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKI 946

Query: 58  APPLCFTKEDANYLVDVMD 76
            PPLC  +E A++ VD++D
Sbjct: 947 KPPLCLDRESADFFVDMLD 965

Length = 972

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKM----KQMGVLIGKGGF----YGNVFRI 57
           +GD RG G ++G+E V D + ++    D +  +    K+ G++IGK G     Y NV  +
Sbjct: 366 VGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTL 425

Query: 58  APPLCFTKEDANYLVDVMDCSM 79
           +PPL  + E+  ++V  +  ++
Sbjct: 426 SPPLVISSEEIAFIVGTLKTAL 447

Length = 451

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 61.4 bits (150), Expect = 8e-13
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
            +Y  + + RG G M+G+E     + R     D++  +++ GVL+   G   NV R  PP
Sbjct: 325 RRYPLVKEVRGRGLMIGIELKEPYRAR-----DIVRALREEGVLVLPAG--PNVIRFLPP 377

Query: 61  LCFTKEDANYLVDVMD 76
           L  T+E+ +  +D ++
Sbjct: 378 LVITEEEIDEALDALE 393

Length = 404

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 1   DKYGTIGDARGWGFMLGVEFV-TDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
           +K+  IGD RG G M+G+E V  D +        ++DK  + G+L    G  GNV R+ P
Sbjct: 348 EKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIP 407

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
           PL  TKE+ +  +D++D ++T+
Sbjct: 408 PLTVTKEEIDEGLDILDEALTE 429

Length = 433

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
           +KY  I + RG G M+G+E    +        +++ K  + G+LI   G   NV R+ PP
Sbjct: 323 EKYPGIKEVRGLGLMIGIELDRPAA-------EIVKKALEKGLLINVTG--DNVLRLLPP 373

Query: 61  LCFTKEDANYLVDVMD 76
           L  +KE+ +  VD ++
Sbjct: 374 LIISKEEIDEAVDRLE 389

Length = 396

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 56.2 bits (136), Expect = 5e-11
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM--------GVLIGKGGFYG 52
           +++  +GD RG G ML ++ V D   R  E +D                GVL+      G
Sbjct: 362 ERFELVGDVRGKGLMLALDLVADKATR--EPIDPSKGYANAVADVARENGVLVRPS---G 416

Query: 53  NVFRIAPPLCFTKEDANYLVDVMDCSMTK 81
               ++PPL   +ED + +VD +D  ++ 
Sbjct: 417 TKIILSPPLVIQREDVDRIVDALDAGLSA 445

Length = 449

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
           + +  IGD RG G M+GVE V ++     E T  +  +  ++G+++   G +GNV RI P
Sbjct: 362 ESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITP 421

Query: 60  PLCFTKEDANYLVDVMD 76
           PL  TKE A   +++M+
Sbjct: 422 PLVITKEIAEKGLEIME 438

Length = 457

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score = 53.2 bits (128), Expect = 5e-10
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
            K+  IGD RG G M+GV+ V D + +     E   V+ +  ++G+++    F GNV RI
Sbjct: 345 KKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF--FSGNVLRI 402

Query: 58  APPLCFTKEDANYLVDVMD 76
            PPL   KE  +  +D+++
Sbjct: 403 QPPLTIEKEVLDEGLDILE 421

Length = 443

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 52.9 bits (128), Expect = 7e-10
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVM----DKMKQMGVLIGKGGFYGNVFRIAPPL 61
           +GD RG G +  +E V D   +      V         + G+LI   G   +V  + PPL
Sbjct: 367 VGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG---DVIYLMPPL 423

Query: 62  CFTKEDANYLVDVM 75
             T+E+ + LVD +
Sbjct: 424 IITREEIDELVDAL 437

Length = 449

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 52.4 bits (126), Expect = 9e-10
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           KY  +GD RG+G  +G++ V+D +L+  +    L + +   + GV+I      GNV R  
Sbjct: 349 KYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVI--IAVAGNVLRFQ 406

Query: 59  PPLCFTKEDANYLVDVMDCSMTK 81
           PPL  T E  +  ++ ++ + T 
Sbjct: 407 PPLVITYEQLDTALNTIEQAFTA 429

Length = 445

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLD-VMDKMKQMGVL-IGKGGFYGNVFRIA 58
           +KY  IGD RG G M+GVE V D +    +  D V+ +  + G+L +G G    +  RI 
Sbjct: 360 EKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG---KSAIRII 416

Query: 59  PPLCFTKEDANYLVDVMD 76
           PPL  T+E+A+  +++++
Sbjct: 417 PPLIITEEEADIGLEILE 434

Length = 441

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
            +   IGD RG G M+ +E V           T  +       GV++   G YGNV R+ 
Sbjct: 360 AEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLL 419

Query: 59  PPL 61
           PPL
Sbjct: 420 PPL 422

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 50.1 bits (120), Expect = 7e-09
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK------AETLDVMDKMKQMGVLI-----GKGG 49
            +   IGD RG G ++GVEFV D + ++      A   +++    + G+L+     G+ G
Sbjct: 346 QQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDG 405

Query: 50  FYGNVFRIAPPLCFTKEDANYLVDVM 75
             G+   IAPP+  T  + + L+ + 
Sbjct: 406 KEGDAVIIAPPMTITYSELDELLSIF 431

Length = 447

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           KY  IGD RG G M   E V D + +   K  T ++  +  + G+L+   G YGNV R+ 
Sbjct: 361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVL 420

Query: 59  PPLCFTKEDAN 69
            PL  T E   
Sbjct: 421 MPLVITDEQLE 431

Length = 451

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 10  RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDAN 69
           RG G MLG+E     +       D++ K  + G+L+   G    V R  PPL  TKE+ +
Sbjct: 319 RGKGLMLGIELEAPCK-------DIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEID 369

Query: 70  YLVDVMD 76
             V  ++
Sbjct: 370 EAVSALE 376

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 6   IGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
           IGD RG G M+ VE V D             +       G+L+   G +GN+ R  PPL 
Sbjct: 343 IGDVRGLGAMIAVELV-DPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLT 401

Query: 63  FTKEDANYLVDVM 75
              E  +  +D++
Sbjct: 402 IGDELLSEGLDIL 414

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 5   TIGDARGWGFMLGVEFVTDSQ------LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
            +GD RG   M  VE V D           A    +    ++ G+L+       ++  ++
Sbjct: 373 LVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRP---LEHLCVLS 429

Query: 59  PPLCFTKEDANYLVDVMDCSMT 80
           PPL  T+   + +V ++  ++ 
Sbjct: 430 PPLIITRAQIDEIVAILRAAIE 451

Length = 466

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           K+  IGD RG G M+ +E   D    K     T  ++ + +  G+++   G Y NV RI 
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRIL 400

Query: 59  PPLCFTKEDA 68
            PL  T EDA
Sbjct: 401 VPL--TIEDA 408

Length = 425

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 6   IGDARGWGFMLGVEF-VTDSQLRKAE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
           I D RG GFM  VEF   DS L  AE    V  K  + G+++   G +GNV R   P+  
Sbjct: 344 IADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITI 403

Query: 64  TKEDANYLVDVMDCSM 79
             +     +D+++ S+
Sbjct: 404 QDDVFAEALDILEASI 419

Length = 425

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 17/78 (21%)

Query: 2   KYGTIGDARGWGFMLGVEFV-------------TDSQLRKAETLDVMDKMKQMGVLIGKG 48
            Y  +GD RG G MLGVE V              + +L       +  +  + G+++  G
Sbjct: 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASL----IQRECLRRGLILELG 427

Query: 49  GFYGNVFRIAPPLCFTKE 66
           G +G+V R  PPL  T E
Sbjct: 428 GRHGSVVRFLPPLIITAE 445

Length = 464

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 17/85 (20%)

Query: 2   KYGTIGDARGWGFMLGVEFV-------------TDSQLRKAETLDVMDKMKQMGVLIGKG 48
           +Y  IG+ RG G M+G+E V              D +L  A    +     + G+L+ +G
Sbjct: 366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAA----IQKACFENGLLLERG 421

Query: 49  GFYGNVFRIAPPLCFTKEDANYLVD 73
           G  GNV R+ PPL  T+ +    +D
Sbjct: 422 GRNGNVVRLLPPLLITQAECEEFID 446

Length = 459

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR-----KAETLDVMDKMKQMGVLIGKGGFYGNVF 55
            KY  IGD RG G + GVE VTD   +     +AE   V+ +    G+        GNV 
Sbjct: 370 AKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEA--VLYRCLNNGLSFKVSQ--GNVI 425

Query: 56  RIAPPLCFTKEDANYLVDVMD 76
           +++PPL  T+E+    + +++
Sbjct: 426 QLSPPLIITREELTQALAILE 446

Length = 459

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G +  +  V D         D+  K+K+ G+L      +GN+ R+APPL  T+
Sbjct: 331 ITEVRGRGLLNAI--VIDESKTGRTAWDLCLKLKEKGLLAKPT--HGNIIRLAPPLVITE 386

Query: 66  EDANYLVDVM 75
           E  +  ++++
Sbjct: 387 EQLDEGLEII 396

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G +LG++ V  ++       D++  ++  G+L    G   NV R+ PPL  T+
Sbjct: 322 IEEVRGKGLLLGLKCVVPNR-------DLVQALRDEGLLTVGAG--DNVVRLLPPLIITE 372

Query: 66  EDAN 69
           E+ +
Sbjct: 373 EEID 376

Length = 389

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDK--------MKQMGVLIGKGGFYGNVFRI 57
           +G+ RG G +  VEFV D   R     D   K          + GV I +   +G++   
Sbjct: 374 VGEVRGVGMLAAVEFVADRDDRTP--FDPALKIGPQVSAAALERGV-IARAMPHGDILGF 430

Query: 58  APPLCFTKEDANYLVDV 74
           APPL  T+ +A+ +V +
Sbjct: 431 APPLVLTRAEADEIVAI 447

Length = 461

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
             + + RG G ML VE   ++   +       + +K+ G+L      + +  R+APPL  
Sbjct: 330 NIVREVRGRGLMLAVELEPEAGGARQ----YCEALKERGLLAKDT--HDHTIRLAPPLVI 383

Query: 64  TKEDANYLVD 73
           T+E  ++ ++
Sbjct: 384 TREQVDWALE 393

Length = 401

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 18/71 (25%)

Query: 10  RGWGFMLGVEFVTDSQLRKAETLDVM-----DKMKQMGVLIGKGGFYGNVFRIAPPLCFT 64
           RG G ++G++            LDV      D  +  G+L+   G  G+V R+ PPL  +
Sbjct: 317 RGVGLLVGIQ------------LDVPAGPLVDACRDSGLLVLTAG-KGDVVRLVPPLVIS 363

Query: 65  KEDANYLVDVM 75
           + +    V+++
Sbjct: 364 EAELEQAVEIL 374

Length = 382

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK--AETLDVMDKMKQMGVLIGKGGFY----GNV 54
           +++ ++G+ RG G    +E V D + R+  A        M  +     + G      GN 
Sbjct: 359 ERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNR 418

Query: 55  FRIAPPLCFTKEDANYLVDVMD 76
             + PP   T+++    + ++D
Sbjct: 419 IHVVPPCTVTEDEVREGLAILD 440

Length = 451

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMK---------QMGVLIGKGGFYG 52
           ++  IG+ RG G M G+  V + Q + A      D            + G+L+  GG  G
Sbjct: 347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREG 406

Query: 53  NVFRIAPPLCFTKED 67
            VFR+  P+   +E+
Sbjct: 407 EVFRLLCPITIDQEE 421

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 11/64 (17%)

Query: 5   TIGDARGWGFMLGVEFVTD-SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
           T+   RG G+M+G+E   D SQL +A         +  G+++   G   NV R+ PPL  
Sbjct: 310 TVTTVRGLGYMIGIETTADLSQLVEAA--------RDKGLIVLTAG--TNVIRLLPPLTL 359

Query: 64  TKED 67
           TKE+
Sbjct: 360 TKEE 363

Length = 375

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRK--AE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
           I D R  G M+ VEF  D Q  K   E T     +  + G+L+   G +GNV R   PL 
Sbjct: 344 IVDIRARGSMVAVEF-NDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPL- 401

Query: 63  FTKEDANY 70
            T  DA +
Sbjct: 402 -TIPDAQF 408

Length = 421

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKA---ETLDVMDKMKQM----GVLIGKGGFYGNVFRIA 58
           +GD RG G +  +E V D    K      LD  D++       G++     F   V   A
Sbjct: 368 VGDVRGRGLLGALELVADKA-TKTPFDAALDPADRIFDRAYANGLVFR--AFGDGVLGFA 424

Query: 59  PPLCFTKED 67
           P LC T+ +
Sbjct: 425 PALCCTEGE 433

Length = 459

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
           +GD R  G M+G+E V + + ++           V  + +++G+L       GN     P
Sbjct: 377 VGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRP---LGNTIVFMP 433

Query: 60  PLCFTKEDANYLVDVM 75
           PL  T ++ + ++ ++
Sbjct: 434 PLASTIDELDEMLRIL 449

Length = 460

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
           K   + + RG G +  + F   S    A   D+  K+K+ G+L        N+ R APPL
Sbjct: 321 KSPWVKEIRGKGLLNAIVF-DHSDGVNAW--DLCLKLKENGLLAKPTH--DNIIRFAPPL 375

Query: 62  CFTKEDANYLVDVM 75
             TKE  +  ++++
Sbjct: 376 VITKEQLDQALEII 389

Length = 400

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G  +GVE    ++          + +K+ G+L  +   +  V R APPL  TK
Sbjct: 331 IKEVRGRGLFIGVELNEPAR-------PYCEALKEEGLLCKET--HETVIRFAPPLVITK 381

Query: 66  ED 67
           E+
Sbjct: 382 EE 383

Length = 396

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 5   TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFT 64
            + + RG G M+G+E          E   V++++++ G+L+   G   NV R+ PPL  T
Sbjct: 312 CVKNIRGKGLMIGIEC-------TEEVAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVT 362

Query: 65  KED 67
           KE+
Sbjct: 363 KEE 365

Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.91
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.82
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.81
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.81
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.78
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.77
PRK07483	443	hypothetical protein; Provisional	99.77
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.76
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.75
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.75
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.75
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.75
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.74
PRK05965	459	hypothetical protein; Provisional	99.74
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.74
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.73
PRK06149	972	hypothetical protein; Provisional	99.73
PRK06105	460	aminotransferase; Provisional	99.73
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.72
PRK06917	447	hypothetical protein; Provisional	99.72
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK06148	1013	hypothetical protein; Provisional	99.7
PRK07480	456	putative aminotransferase; Validated	99.7
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.7
PRK07481	449	hypothetical protein; Provisional	99.7
PRK12403	460	putative aminotransferase; Provisional	99.7
PRK07036	466	hypothetical protein; Provisional	99.7
PRK07482	461	hypothetical protein; Provisional	99.69
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.69
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.68
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.68
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.68
PRK07678	451	aminotransferase; Validated	99.68
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.67
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.66
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.66
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.66
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.65
PRK06062	451	hypothetical protein; Provisional	99.65
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.65
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.65
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.64
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.64
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.64
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.63
PRK06541	460	hypothetical protein; Provisional	99.63
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.61
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.61
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.59
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.56
PRK08297	443	L-lysine aminotransferase; Provisional	99.55
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.54
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.54
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.52
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.51
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.5
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.48
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.47
PLN00144	382	acetylornithine transaminase	99.47
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.42
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.41
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.41
PLN02624	474	ornithine-delta-aminotransferase	99.36
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.34
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.31
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.29
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.28
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.18
PRK04260	375	acetylornithine aminotransferase; Provisional	99.13
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.12
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.12
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.11
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.1
PRK02627	396	acetylornithine aminotransferase; Provisional	99.07
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.04
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.02
PRK07046	453	aminotransferase; Validated	98.96
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	98.94
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.92
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	98.87
PRK07505	402	hypothetical protein; Provisional	98.65
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.55
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.53
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.51
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	98.46
PRK13393	406	5-aminolevulinate synthase; Provisional	98.34
PRK07179	407	hypothetical protein; Provisional	98.04
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.99
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	97.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	97.8
PRK09064	407	5-aminolevulinate synthase; Validated	97.76
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	97.62
TIGR01814	406	kynureninase kynureninase. This model describes ky	97.5
PLN02721	353	threonine aldolase	97.41
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	97.39
PRK13520	371	L-tyrosine decarboxylase; Provisional	97.33
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	97.29
PRK13392	410	5-aminolevulinate synthase; Provisional	97.28
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.21
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	97.18
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	97.1
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	97.02
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	96.96
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	96.93
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	96.72
PLN02483	489	serine palmitoyltransferase	96.67
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	96.66
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	96.62
PRK02731	367	histidinol-phosphate aminotransferase; Validated	96.54
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	96.47
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	96.46
cd00609	350	AAT_like Aspartate aminotransferase family. This f	96.32
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	96.3
PRK06225	380	aspartate aminotransferase; Provisional	96.29
PRK10874	401	cysteine sulfinate desulfinase; Provisional	96.24
PRK03080	378	phosphoserine aminotransferase; Provisional	96.19
COG3844	407	Kynureninase [Amino acid transport and metabolism]	96.17
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	95.96
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	95.92
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	95.85
PRK02948	381	cysteine desulfurase; Provisional	95.76
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	95.73
PRK00950	361	histidinol-phosphate aminotransferase; Validated	95.67
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	95.57
PLN02822	481	serine palmitoyltransferase	95.46
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	95.39
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	95.37
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	95.34
PRK06108	382	aspartate aminotransferase; Provisional	95.33
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	95.32
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	95.26
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	95.25
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	95.23
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	94.99
PRK10534	333	L-threonine aldolase; Provisional	94.93
PRK04366	481	glycine dehydrogenase subunit 2; Validated	94.74
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	94.64
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	94.61
PRK05764	393	aspartate aminotransferase; Provisional	94.51
PRK13034	416	serine hydroxymethyltransferase; Reviewed	94.44
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	94.41
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	94.38
PTZ00094	452	serine hydroxymethyltransferase; Provisional	94.37
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	94.33
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	94.33
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	94.28
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	94.09
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	94.08
PRK03321	352	putative aminotransferase; Provisional	93.89
PLN02955	476	8-amino-7-oxononanoate synthase	93.88
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	93.78
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	93.77
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	93.69
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	93.69
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	93.49
PRK00451	447	glycine dehydrogenase subunit 1; Validated	93.49
PRK07682	378	hypothetical protein; Validated	93.47
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	93.27
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	93.19
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	92.9
PRK06836	394	aspartate aminotransferase; Provisional	92.89
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	92.79
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	92.76
PRK06425	332	histidinol-phosphate aminotransferase; Validated	92.76
PRK01533	366	histidinol-phosphate aminotransferase; Validated	92.75
PRK07324	373	transaminase; Validated	92.66
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	92.59
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	92.45
PRK07908	349	hypothetical protein; Provisional	92.12
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	91.99
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	91.99
PRK05367	954	glycine dehydrogenase; Provisional	91.9
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	91.45
PRK13580	493	serine hydroxymethyltransferase; Provisional	91.44
PLN02414	993	glycine dehydrogenase (decarboxylating)	91.39
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	91.19
PRK07568	397	aspartate aminotransferase; Provisional	90.9
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	90.74
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	90.71
PRK09265	404	aminotransferase AlaT; Validated	90.69
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	90.41
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	90.24
PRK06358	354	threonine-phosphate decarboxylase; Provisional	89.93
PRK07683	387	aminotransferase A; Validated	89.66
PRK06207	405	aspartate aminotransferase; Provisional	89.28
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	89.25
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	88.95
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	88.8
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	88.47
PRK08056	356	threonine-phosphate decarboxylase; Provisional	88.22
PRK08361	391	aspartate aminotransferase; Provisional	87.97
PRK09105	370	putative aminotransferase; Provisional	87.96
PRK08912	387	hypothetical protein; Provisional	87.91
PLN02409	401	serine--glyoxylate aminotransaminase	87.86
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	87.83
PRK14012	404	cysteine desulfurase; Provisional	87.75
PLN00175	413	aminotransferase family protein; Provisional	87.55
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	87.53
PRK08363	398	alanine aminotransferase; Validated	87.49
PHA02771	90	hypothetical protein; Provisional	87.22
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	87.1
PRK05957	389	aspartate aminotransferase; Provisional	86.73
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	86.7
PTZ00433	412	tyrosine aminotransferase; Provisional	86.49
PRK07681	399	aspartate aminotransferase; Provisional	86.46
PRK05367	954	glycine dehydrogenase; Provisional	86.36
PRK12566	954	glycine dehydrogenase; Provisional	86.33
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	85.96
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	85.74
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	85.51
PRK05839	374	hypothetical protein; Provisional	85.42
KOG1368	384	consensus Threonine aldolase [Amino acid transport	84.86
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	84.79
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	84.56
PTZ00377	481	alanine aminotransferase; Provisional	84.42
PLN02187	462	rooty/superroot1	84.3
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	84.23
PLN02414	993	glycine dehydrogenase (decarboxylating)	84.16
PRK08175	395	aminotransferase; Validated	83.84
PRK06107	402	aspartate aminotransferase; Provisional	83.55
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	83.55
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	83.43
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	83.39
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	83.24
PRK06348	384	aspartate aminotransferase; Provisional	83.08
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	82.55
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	82.46
PRK12414	384	putative aminotransferase; Provisional	81.33
PRK07366	388	succinyldiaminopimelate transaminase; Validated	81.3
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	81.28
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	81.23
PHA02772	95	hypothetical protein; Provisional	81.18
PRK08354	311	putative aminotransferase; Provisional	81.17
PLN02656	409	tyrosine transaminase	81.12
PRK07550	386	hypothetical protein; Provisional	80.48
PRK08637	388	hypothetical protein; Provisional	80.26
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	80.11
PRK15399	713	lysine decarboxylase LdcC; Provisional	80.08
PRK13578	720	ornithine decarboxylase; Provisional	80.05
PRK08960	387	hypothetical protein; Provisional	80.02

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.91  E-value=3.1e-24  Score=151.17  Aligned_cols=81  Identities=32%  Similarity=0.578  Sum_probs=74.7

Q ss_pred             CCCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         1 ~~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ++||.|+||||+|||+||||+++..++   .+.+.+++..|+++||++..||.++|+|||.|||+||++|+|+++++|++
T Consensus       362 ~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~  441 (447)
T COG0160         362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEE  441 (447)
T ss_pred             hhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHH
Confidence            468999999999999999999876543   57889999999999999999999999999999999999999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      +|.+
T Consensus       442 al~~  445 (447)
T COG0160         442 ALKE  445 (447)
T ss_pred             HHHh
Confidence            9874

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.82  E-value=7.5e-20  Score=126.63  Aligned_cols=75  Identities=55%  Similarity=0.920  Sum_probs=65.5

Q ss_pred             CCCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            1 DKYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         1 ~~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++||.|+||||+|||+|+|+++++...    ...+..+.+.|.++|+++...+.++|++|+.||||||++|+|.+++..
T Consensus       354 d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  354 DKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             hcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence            478999999999999999999887322    345677889999999999888889999999999999999998888855

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.81  E-value=1.3e-19  Score=127.67  Aligned_cols=77  Identities=29%  Similarity=0.473  Sum_probs=69.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      +||.|+||||+|||.|||++.+++++    ...+.++.+.++++||++|+.   ++++.++|||+||++|+|++++++.+
T Consensus       363 ~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g~~i~~~PPliit~~eid~l~~~l~~  439 (449)
T COG0161         363 DHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---GDVIYLMPPLIITREEIDELVDALRE  439 (449)
T ss_pred             cCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec---CCEEEEcCCccCCHHHHHHHHHHHHH
Confidence            57899999999999999999888765    345778899999999999997   68999999999999999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      ++++
T Consensus       440 al~~  443 (449)
T COG0161         440 ALDE  443 (449)
T ss_pred             HHHH
Confidence            9863

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.5e-19  Score=125.67  Aligned_cols=73  Identities=29%  Similarity=0.610  Sum_probs=66.1

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +||.|++|||+|||+|+||..+.     .+..+++.++++||++..++  +|+|||.|||+||++|+|+++++++++++.
T Consensus       326 ~~~~v~~vRG~GLmiGiel~~~~-----~a~~~~~~~~~~gvL~~~a~--~~ViR~~PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         326 RYPLVKEVRGRGLMIGIELKEPY-----RARDIVRALREEGVLVLPAG--PNVIRFLPPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             cCCceeeeecceeEEEEEecCcc-----cHHHHHHHHHHCCeEEecCC--CCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence            57789999999999999998653     47789999999999999875  789999999999999999999999999863

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.78  E-value=1.7e-18  Score=123.21  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=65.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|||+||||+.+..++      ...+..+.+.|+++||+++++   +|+|+|+|||+||++|+|++++++
T Consensus       385 ~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g~vi~~~PpL~it~~ei~~~~~~l  461 (472)
T PRK08742        385 EHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL---GDVLYWMPPYCVDEAQLALLADTT  461 (472)
T ss_pred             cCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999998654321      123567889999999999886   589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       462 ~~~l~~  467 (472)
T PRK08742        462 RHAIDE  467 (472)
T ss_pred             HHHHHH
Confidence            999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.77  E-value=2.6e-18  Score=121.94  Aligned_cols=80  Identities=29%  Similarity=0.494  Sum_probs=68.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.|++|||.|||+|+||+++..++         ...+..+...|+++|+++.+++..+++|+|.|||++|++|+|+++
T Consensus       372 ~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~  451 (464)
T PRK06938        372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVA  451 (464)
T ss_pred             hCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHH
Confidence            58899999999999999997653221         235677889999999999887656799999999999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++++++|.+
T Consensus       452 ~~l~~~l~~  460 (464)
T PRK06938        452 EIFAEAVAA  460 (464)
T ss_pred             HHHHHHHHH
Confidence            999999863

>PRK07483 hypothetical protein; Provisional

Probab=99.77  E-value=3.8e-18  Score=120.47  Aligned_cols=80  Identities=23%  Similarity=0.392  Sum_probs=67.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANY   70 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~   70 (82)
                      +||.|.+|||+|||+|+||+++..+.      .+.+..+.+.|+++|+++.+++.     .+++|+|+|||+||++|+|+
T Consensus       347 ~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~  426 (443)
T PRK07483        347 QHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDE  426 (443)
T ss_pred             cCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHH
Confidence            58889999999999999998653221      13467789999999999987642     26899999999999999999


Q ss_pred             HHHHHHHhHhc
Q 042283           71 LVDVMDCSMTK   81 (82)
Q Consensus        71 ~~~~l~~~l~~   81 (82)
                      ++++++++|.+
T Consensus       427 ~~~~l~~~l~~  437 (443)
T PRK07483        427 IVERLGDAIDA  437 (443)
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.76  E-value=5e-18  Score=119.71  Aligned_cols=80  Identities=24%  Similarity=0.419  Sum_probs=68.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.|++|||+|||+||||+++..+.         ...+..+...|+++|+++.+.+..+++|+|+|||+||++|+|+++
T Consensus       347 ~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~  426 (442)
T TIGR00709       347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGI  426 (442)
T ss_pred             hCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHH
Confidence            68899999999999999997653211         235677889999999999887666899999999999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++++++|++
T Consensus       427 ~~l~~~l~~  435 (442)
T TIGR00709       427 SRFKQAVEE  435 (442)
T ss_pred             HHHHHHHHH
Confidence            999999863

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.75  E-value=1.1e-17  Score=117.67  Aligned_cols=80  Identities=26%  Similarity=0.348  Sum_probs=68.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++|.+.+|||.|+|+++||.++...  ....+..+.+.|+++|+++..++..+|+|||.|||+||++|+|+++++++++|
T Consensus       340 ~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l  419 (425)
T PRK07495        340 TVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASI  419 (425)
T ss_pred             hCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence            4788999999999999999754321  12456788999999999998876667999999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       420 ~~  421 (425)
T PRK07495        420 LE  421 (425)
T ss_pred             HH
Confidence            63

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.75  E-value=5.9e-18  Score=117.19  Aligned_cols=70  Identities=20%  Similarity=0.420  Sum_probs=61.9

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.|++|||+|||+|+||.++       +..+.+.|+++|+++.+++  .|++||.|||+||++|+|++++++++++++
T Consensus       291 ~~~v~~vRG~Gl~~gve~~~~-------~~~i~~~~~~~Gll~~~~g--~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        291 GERVVTTRGRGLMIGIVLKKP-------VGKYVEELQNRGYLVHTAG--QRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             cCcceeeeeCcEEEEEEeCCc-------HHHHHHHHHhCCcEEeeCC--CCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence            367999999999999999632       4578899999999998864  599999999999999999999999999863

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.75  E-value=1e-17  Score=118.74  Aligned_cols=80  Identities=30%  Similarity=0.591  Sum_probs=68.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC---------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL---------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~---------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.|++|||.|+|+|+||+++..+         ....+..+...|+++|+++.+.+..+|+++|+|||++|++|+|+++
T Consensus       366 ~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~  445 (459)
T PRK06931        366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFI  445 (459)
T ss_pred             hCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHH
Confidence            5889999999999999999764321         1245677889999999999887656899999999999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++++++|.+
T Consensus       446 ~~l~~~l~~  454 (459)
T PRK06931        446 DRFEQALLA  454 (459)
T ss_pred             HHHHHHHHH
Confidence            999999863

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.75  E-value=8.7e-18  Score=118.05  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=64.4

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.|++|||+|+|++|||.++.     .+..+.+.|+++|+++.+.   +++++|+|||++|++|+|+++++++++|++
T Consensus       349 ~~~~v~~vRg~Gl~~~ie~~~~~-----~~~~~~~~~~~~Gl~~~~~---g~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        349 HLPGVADVRVLGAIGVVEMEQPV-----DMEEATQAAVDHGVWLRPF---GRLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             cCCCeeeeeccccEEEEEECCcc-----cHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            47889999999999999997532     2457888999999999875   489999999999999999999999999987


Q ss_pred             C
Q 042283           82 K   82 (82)
Q Consensus        82 ~   82 (82)
                      |
T Consensus       421 ~  421 (422)
T PRK05630        421 K  421 (422)
T ss_pred             c
Confidence            6

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=1.3e-17  Score=118.23  Aligned_cols=78  Identities=33%  Similarity=0.591  Sum_probs=66.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.|++|||+|+|+|+||+.+..+.   .+.+..+...|+++||++.+++  +++++|+|||+||++|||+++++++++
T Consensus       371 ~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~i~~~Ppl~it~~eid~~~~~l~~~  448 (459)
T PRK06082        371 KYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ--GNVIQLSPPLIITREELTQALAILEEA  448 (459)
T ss_pred             hCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC--CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence            58889999999999999998643322   2456778899999999998763  799999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +.+
T Consensus       449 l~~  451 (459)
T PRK06082        449 IAK  451 (459)
T ss_pred             HHH
Confidence            853

>PRK05965 hypothetical protein; Provisional

Probab=99.74  E-value=2e-17  Score=117.29  Aligned_cols=78  Identities=22%  Similarity=0.412  Sum_probs=66.4

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|+|+||||..+..++      ...+..+...|+++|+++++++  .++|+|+|||++|++|+|++++++
T Consensus       364 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--~~~i~~~PpL~it~~ei~~~~~~l  441 (459)
T PRK05965        364 AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG--DGVLGFAPALCCTEGEFDLIFERT  441 (459)
T ss_pred             cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC--CcEEEEECCCcCCHHHHHHHHHHH
Confidence            47889999999999999998643221      1356788999999999998864  589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       442 ~~~l~~  447 (459)
T PRK05965        442 RKTLDD  447 (459)
T ss_pred             HHHHHH
Confidence            999863

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=2.4e-17  Score=116.82  Aligned_cols=79  Identities=34%  Similarity=0.595  Sum_probs=67.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc-hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR-KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~-~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +||.+.+|||+|||+++||..+...+ .+.+..+.+.|+++|+++.+++..+++|||.|||++|++|+|+++++++++++
T Consensus       363 ~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~  442 (457)
T PRK05639        363 SFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK  442 (457)
T ss_pred             hCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence            57889999999999999997643322 34567889999999999988765579999999999999999999999999985

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.73  E-value=2.2e-17  Score=116.95  Aligned_cols=77  Identities=10%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +||.|++|||+|+|+++||+.+.......+..+...|+++||++.++   +++++|+|||++|++|||+++++++++|++
T Consensus       370 ~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~---g~~l~~~Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        370 AHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI---GTTVYLMPPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             cCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec---CCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999998543222345678899999999999876   478999999999999999999999999863

>PRK06149 hypothetical protein; Provisional

Probab=99.73  E-value=2.4e-17  Score=124.98  Aligned_cols=80  Identities=36%  Similarity=0.682  Sum_probs=69.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.|++|||+|||+|+||+.+..+.   .+.+..+.+.|+++|+++.++|..+|+|+|.|||+||++|+|+++++++++
T Consensus       888 ~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~  967 (972)
T PRK06149        888 RHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRV  967 (972)
T ss_pred             hCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence            58899999999999999998543321   345678999999999999998767799999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      |.+
T Consensus       968 l~~  970 (972)
T PRK06149        968 LTE  970 (972)
T ss_pred             HHh
Confidence            964

>PRK06105 aminotransferase; Provisional

Probab=99.73  E-value=3.2e-17  Score=116.21  Aligned_cols=77  Identities=22%  Similarity=0.390  Sum_probs=65.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|+|+||||+.+..++      ...+..+...|+++||++.++   +++++|+|||+||++|+|++++++
T Consensus       367 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l  443 (460)
T PRK06105        367 DHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM---GDTLAFCPPLIITAAQVDEMVDRF  443 (460)
T ss_pred             cCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCccCHHHHHHHHHHH
Confidence            58899999999999999998543321      234567889999999999875   589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       444 ~~~l~~  449 (460)
T PRK06105        444 GRALDD  449 (460)
T ss_pred             HHHHHH
Confidence            999863

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.72  E-value=6.6e-17  Score=114.01  Aligned_cols=80  Identities=30%  Similarity=0.488  Sum_probs=68.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +|+.|++|||.|+|++++|+++...  ..+.+..+.+.|+++||++.+++..+++|||+|||++|++|+|+++++++++|
T Consensus       361 ~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l  440 (443)
T PRK06058        361 EDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAAL  440 (443)
T ss_pred             hCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence            4788999999999999999865311  13467788999999999998876567999999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       441 ~~  442 (443)
T PRK06058        441 AD  442 (443)
T ss_pred             Hh
Confidence            64

>PRK06917 hypothetical protein; Provisional

Probab=99.72  E-value=6.9e-17  Score=114.21  Aligned_cols=80  Identities=29%  Similarity=0.500  Sum_probs=67.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANY   70 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~   70 (82)
                      +||.+.+|||.|+|+++||+++..+.      .+.+..+...|+++||++.+++     ..+|+++|+|||++|++|||+
T Consensus       347 ~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~  426 (447)
T PRK06917        347 QSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDE  426 (447)
T ss_pred             cCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHH
Confidence            57889999999999999998653321      2456788999999999998763     237899999999999999999


Q ss_pred             HHHHHHHhHhc
Q 042283           71 LVDVMDCSMTK   81 (82)
Q Consensus        71 ~~~~l~~~l~~   81 (82)
                      ++++++++|++
T Consensus       427 ~~~~l~~~l~~  437 (447)
T PRK06917        427 LLSIFAKSVEE  437 (447)
T ss_pred             HHHHHHHHHHH
Confidence            99999999853

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=8.6e-17  Score=114.27  Aligned_cols=77  Identities=23%  Similarity=0.412  Sum_probs=65.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|+|++|||++++.++      ...+..+...|+++|+++.++   +++++|+|||++|++|||++++++
T Consensus       364 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~i~~~Ppl~it~~eid~~~~~l  440 (466)
T PRK07030        364 DHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---GSVVYFLPPYVITPEQIDFLAEVA  440 (466)
T ss_pred             cCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHHHHHHHHHH
Confidence            57889999999999999998644321      123467889999999999875   489999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       441 ~~al~~  446 (466)
T PRK07030        441 SEGIDI  446 (466)
T ss_pred             HHHHHH
Confidence            999864

>PRK06148 hypothetical protein; Provisional

Probab=99.70  E-value=6.9e-17  Score=122.91  Aligned_cols=80  Identities=39%  Similarity=0.711  Sum_probs=69.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.|++|||.|||+|+||..+..+.   .+.+..+.+.|+++||++.++|..++++||.|||++|++|+|+++++++++
T Consensus       928 ~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148        928 RFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred             hCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            58899999999999999998654322   345678999999999999988777899999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      |.+
T Consensus      1008 l~~ 1010 (1013)
T PRK06148       1008 LAA 1010 (1013)
T ss_pred             HHH
Confidence            863

>PRK07480 putative aminotransferase; Validated

Probab=99.70  E-value=9.4e-17  Score=113.79  Aligned_cols=77  Identities=23%  Similarity=0.366  Sum_probs=64.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||.|+|+|+||+++..++      ......+...|+++|+++.++   +++++|+|||+||++|||++++++
T Consensus       366 ~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~l~~~Ppl~it~~eid~~~~~l  442 (456)
T PRK07480        366 DHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV---GDRMIISPPLVITHAEIDELVEKA  442 (456)
T ss_pred             cCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999998653321      123457788999999999875   589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|.+
T Consensus       443 ~~al~~  448 (456)
T PRK07480        443 RKALDA  448 (456)
T ss_pred             HHHHHH
Confidence            999863

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.70  E-value=7.7e-17  Score=113.53  Aligned_cols=72  Identities=18%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +||.|++|||+|+|+++|+..+.     .+..+...|+++|++++++   +++|+|+|||+||++|+++++++++++|++
T Consensus       352 ~~~~i~~vRg~Gl~~~ve~~~~~-----~~~~~~~~l~~~Gl~~~~~---g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        352 DAPMVADVRVLGAIGVVETTRPV-----NMAALQRFFVEQGVWIRPF---GKLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             cCCCEEeEeccceEEEEEeCCcc-----cHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            47889999999999999997542     2557889999999999876   589999999999999999999999999864

>PRK07481 hypothetical protein; Provisional

Probab=99.70  E-value=1.4e-16  Score=112.60  Aligned_cols=77  Identities=32%  Similarity=0.642  Sum_probs=65.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|+|+|+||..+..+.      ...+..+...|+++|+++.++   +++++|+|||+||++|||++++++
T Consensus       363 ~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l  439 (449)
T PRK07481        363 RFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKIILSPPLVIQREDVDRIVDAL  439 (449)
T ss_pred             cCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999997543211      235677889999999999886   468999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      ++++++
T Consensus       440 ~~~l~~  445 (449)
T PRK07481        440 DAGLSA  445 (449)
T ss_pred             HHHHHh
Confidence            999864

>PRK12403 putative aminotransferase; Provisional

Probab=99.70  E-value=1.3e-16  Score=113.09  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=63.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||.|+|+|+||+.+..+.      ......+...|+++|+++.++   +++++|+|||+||++|+|++++++
T Consensus       370 ~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~~~l~Ppl~it~~eid~~~~~l  446 (460)
T PRK12403        370 DHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST---LGRMIMAPALVAGRAEIDELVDKT  446 (460)
T ss_pred             cCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998643321      123455778889999999865   468999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|.+
T Consensus       447 ~~al~~  452 (460)
T PRK12403        447 RIAVDR  452 (460)
T ss_pred             HHHHHH
Confidence            999863

>PRK07036 hypothetical protein; Provisional

Probab=99.70  E-value=1.6e-16  Score=112.87  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=65.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||.|+|+++||+++..++      ...+..+...|+++|+++.+.   +++++|+|||+||++|||++++++
T Consensus       370 ~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~~~~~l~Ppl~it~~~id~~~~~l  446 (466)
T PRK07036        370 ELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL---EHLCVLSPPLIITRAQIDEIVAIL  446 (466)
T ss_pred             cCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec---CCEEEEeCCCcCCHHHHHHHHHHH
Confidence            58899999999999999998654321      235677889999999999875   479999999999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++|+
T Consensus       447 ~~al~  451 (466)
T PRK07036        447 RAAIE  451 (466)
T ss_pred             HHHHH
Confidence            99985

>PRK07482 hypothetical protein; Provisional

Probab=99.69  E-value=1.4e-16  Score=112.94  Aligned_cols=79  Identities=27%  Similarity=0.431  Sum_probs=65.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||.|+|+|+||+++..++      ...+..+...|+++|+++++.. .+++++|+|||++|++|||++++++
T Consensus       370 ~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~-~~~~i~~~Ppl~it~~ei~~~~~~l  448 (461)
T PRK07482        370 DHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP-HGDILGFAPPLVLTRAEADEIVAIA  448 (461)
T ss_pred             cCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC-CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            68899999999999999998643221      1245788999999999987532 3699999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       449 ~~~l~~  454 (461)
T PRK07482        449 KDAVDE  454 (461)
T ss_pred             HHHHHH
Confidence            999863

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.69  E-value=1.9e-16  Score=112.33  Aligned_cols=77  Identities=22%  Similarity=0.486  Sum_probs=65.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +||.|++|||+|+|+|+||+++..++      ...+..+...|+++|+++.+.   +++++|+|||++|++|||++++++
T Consensus       373 ~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~l~~~Ppl~it~~~id~~~~~l  449 (460)
T PRK06916        373 ALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL---GNTIVFMPPLASTIDELDEMLRIL  449 (460)
T ss_pred             cCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHH
Confidence            47889999999999999998654321      123567889999999999875   589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       450 ~~~l~~  455 (460)
T PRK06916        450 YKAISD  455 (460)
T ss_pred             HHHHHh
Confidence            999863

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.68  E-value=1.8e-16  Score=112.17  Aligned_cols=73  Identities=23%  Similarity=0.394  Sum_probs=64.5

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +|| .|++|||.|+|++|||.++     ..+..+++.|+++|+++.+++..++++||.|||++|++|+|+++++++++|
T Consensus       369 ~~~~~i~~vRG~Gl~~giel~~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       369 EYPDLIIEARGKGLLMAIEFRDN-----EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             hCCCceEEEecceEEEEEEeCCh-----HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            477 7899999999999999764     256789999999999998765557999999999999999999999999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.68  E-value=2.1e-16  Score=111.37  Aligned_cols=72  Identities=14%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.|++|||.|+|++|++.++.     .+..+.+.|+++|+++.+.   +++|+|+|||+||++|+|+++++|+++|.+
T Consensus       354 ~~~~v~~vRg~Gl~~~iel~~~~-----~~~~i~~~l~e~Gi~v~~~---g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        354 EFDSVAEVRVLGAIGVVEMKEPV-----NMATLQPRFVEHGIWVRPF---GKLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             cCCCeeeeeccceEEEEEeCCcc-----cHHHHHHHHHHCCeEEEec---CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999996432     3467889999999999876   489999999999999999999999999863

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.68  E-value=3.3e-16  Score=112.28  Aligned_cols=76  Identities=26%  Similarity=0.449  Sum_probs=65.1

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.|.+|||.|+|+|++|.++....      ...+..+.+.|+++|+++.+.   +++++|+|||++|++|||++++++
T Consensus       409 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~lrl~Ppl~it~eeid~~~~~l  485 (504)
T PLN02760        409 GSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA---GDNIMMSPPLIITPEEVDELISIY  485 (504)
T ss_pred             cCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999998654321      134677889999999999875   578999999999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++|+
T Consensus       486 ~~al~  490 (504)
T PLN02760        486 GKALK  490 (504)
T ss_pred             HHHHH
Confidence            99985

>PRK07678 aminotransferase; Validated

Probab=99.68  E-value=4.7e-16  Score=110.05  Aligned_cols=80  Identities=30%  Similarity=0.675  Sum_probs=66.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +||.|.+|||+|+|++++|+.+..+.    .+.+..+...|+++|+++.+.+.    .+++|+|+|||++|++|||++++
T Consensus       362 ~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~  441 (451)
T PRK07678        362 EHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVG  441 (451)
T ss_pred             cCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHH
Confidence            57889999999999999998643221    24567889999999999987542    24899999999999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      ++++++++
T Consensus       442 ~l~~~l~~  449 (451)
T PRK07678        442 TLKTALER  449 (451)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.67  E-value=5.6e-16  Score=109.56  Aligned_cols=77  Identities=22%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.|.++||.|+|++++|..........+..+.+.|+++|++++..   ++++||+|||++|++|||+++++++++|.+
T Consensus       367 ~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~  443 (445)
T PRK09221        367 GLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELVDALGDALRA  443 (445)
T ss_pred             cCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec---CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence            46889999999999999998532211234567889999999999874   589999999999999999999999999864

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.66  E-value=3.8e-16  Score=106.35  Aligned_cols=80  Identities=35%  Similarity=0.647  Sum_probs=70.2

Q ss_pred             CCCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHH-cCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283            1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQ-MGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus         1 ~~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~-~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ++|+.|+||||.||||||+++++..++   .+.+..++.++.+ +|+++...|++.|+++|-||+++++++.++++..|+
T Consensus       353 ~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld  432 (452)
T KOG1403|consen  353 QKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLD  432 (452)
T ss_pred             hhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHH
Confidence            368999999999999999999887654   3456667788876 679999999999999999999999999999999999


Q ss_pred             HhHh
Q 042283           77 CSMT   80 (82)
Q Consensus        77 ~~l~   80 (82)
                      ++|.
T Consensus       433 ~iLT  436 (452)
T KOG1403|consen  433 EILT  436 (452)
T ss_pred             HHHH
Confidence            8874

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.66  E-value=4.6e-16  Score=110.46  Aligned_cols=74  Identities=24%  Similarity=0.433  Sum_probs=65.7

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +|| .|++|||.|+|++|+|.++     +.+..+.+.|+++|+++.+.+.+++++||.|||++|++|+|+++++++++++
T Consensus       376 ~~~~~i~~VrG~Gl~~giel~~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~  450 (459)
T PRK11522        376 EYPDLVQEARGKGMLMAIEFVDN-----EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA  450 (459)
T ss_pred             hCCCceeeEEeceeEEEEEecCc-----hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            577 7899999999999999754     2567889999999999987755679999999999999999999999999985

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.66  E-value=8.9e-16  Score=108.48  Aligned_cols=77  Identities=32%  Similarity=0.635  Sum_probs=65.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.|++|||.|+|++++|..+....   ...+..+...|+++|+++.+.  .++++||+|||++|++|+|+++++++++
T Consensus       349 ~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~  426 (445)
T PRK08593        349 KYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV--AGNVLRFQPPLVITYEQLDTALNTIEQA  426 (445)
T ss_pred             cCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc--CCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence            58899999999999999998543211   345678899999999999765  3689999999999999999999999998


Q ss_pred             Hh
Q 042283           79 MT   80 (82)
Q Consensus        79 l~   80 (82)
                      ++
T Consensus       427 l~  428 (445)
T PRK08593        427 FT  428 (445)
T ss_pred             HH
Confidence            75

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.65  E-value=1.4e-15  Score=106.72  Aligned_cols=79  Identities=23%  Similarity=0.369  Sum_probs=67.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc--hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~--~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +||.+.++||+|+|+++||.++....  ...+..+.+.|+++|+++.+++..+|+|||.|||++|++|++++++++++++
T Consensus       340 ~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l  419 (421)
T PRK09792        340 SVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDAL  419 (421)
T ss_pred             hCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence            57889999999999999997532111  2356788999999999998766567999999999999999999999999998


Q ss_pred             h
Q 042283           80 T   80 (82)
Q Consensus        80 ~   80 (82)
                      .
T Consensus       420 ~  420 (421)
T PRK09792        420 S  420 (421)
T ss_pred             h
Confidence            5

>PRK06062 hypothetical protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=108.17  Aligned_cols=77  Identities=25%  Similarity=0.452  Sum_probs=64.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.|.++||.|+|+||||..+..++         ...+..+.+.|+++|+++.+.   ++++||+|||++|++|||+++
T Consensus       360 ~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~---~~~lrl~ppl~~t~~eid~~~  436 (451)
T PRK06062        360 RHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN---GNRIHVVPPCTVTEDEVREGL  436 (451)
T ss_pred             cCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec---CCEEEEECCccCCHHHHHHHH
Confidence            47889999999999999997543211         124668889999999998764   689999999999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++++++|++
T Consensus       437 ~~l~~~l~~  445 (451)
T PRK06062        437 AILDAALAV  445 (451)
T ss_pred             HHHHHHHHH
Confidence            999999863

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.65  E-value=1.4e-15  Score=107.51  Aligned_cols=77  Identities=19%  Similarity=0.359  Sum_probs=64.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.|.+|||.|+|++++|+.........+..+...|+++||++.++   ++++||+|||++|++|||++++++++++++
T Consensus       364 ~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~---~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~  440 (442)
T PRK13360        364 DAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT---GDILALSPPLIIEEAQIDELFDILAQALKE  440 (442)
T ss_pred             cCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec---CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            36788999999999999998543222234567888999999999875   589999999999999999999999999864

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=2e-15  Score=105.94  Aligned_cols=79  Identities=23%  Similarity=0.272  Sum_probs=67.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++|.+.++||.|+|+++++..+...  ..+.+..+.+.++++||++.+++..++++||+|||++|+++++++++++++++
T Consensus       340 ~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l  419 (421)
T PRK06777        340 SCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL  419 (421)
T ss_pred             hCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            4678999999999999999753211  13467778888999999999887667999999999999999999999999988


Q ss_pred             h
Q 042283           80 T   80 (82)
Q Consensus        80 ~   80 (82)
                      .
T Consensus       420 ~  420 (421)
T PRK06777        420 A  420 (421)
T ss_pred             h
Confidence            5

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.64  E-value=1e-15  Score=107.22  Aligned_cols=74  Identities=22%  Similarity=0.448  Sum_probs=64.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +|+.++++||.|+|++++|.++.   ...+..+.+.|+++|+++.+.+  .+++||.|||++|++|+|+++++++++|.
T Consensus       329 ~~~~i~~vrg~Gl~~~i~~~~~~---~~~a~~i~~~l~~~Gvlv~~~g--~~~lRl~Ppl~it~eeid~~l~~l~~~l~  402 (408)
T PRK04612        329 EFGVFAQVRGRGLMLGAVLAPAH---AGQAGAILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAELADGLARLRLALA  402 (408)
T ss_pred             hCCCeeeeeccceEEEEEecCch---hhHHHHHHHHHHHCCeEEeeCC--CCEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence            47889999999999999997432   1346778899999999998864  59999999999999999999999999985

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=1.6e-15  Score=107.15  Aligned_cols=77  Identities=34%  Similarity=0.562  Sum_probs=65.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.+++|||+|+|+|+||+++..++   ...+..+...|+++|+++.+.  .++++||+|||++|++|+|+++++++++
T Consensus       346 ~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~~lr~~P~l~~t~~~id~~~~~l~~~  423 (443)
T PRK08360        346 KHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF--SGNVLRIQPPLTIEKEVLDEGLDILEEA  423 (443)
T ss_pred             hCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec--CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            47889999999999999998653222   234567889999999998764  3699999999999999999999999999


Q ss_pred             Hh
Q 042283           79 MT   80 (82)
Q Consensus        79 l~   80 (82)
                      ++
T Consensus       424 l~  425 (443)
T PRK08360        424 IE  425 (443)
T ss_pred             HH
Confidence            85

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.64  E-value=5.8e-16  Score=106.06  Aligned_cols=75  Identities=23%  Similarity=0.456  Sum_probs=64.8

Q ss_pred             CC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            3 YG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         3 ~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .| .|++|||+||+.+|+|...+. +...+..++-.+.++|++..+.  ++|+|||+|||+|+++|+++.++++.+++.
T Consensus       351 ~p~~v~~VRGrGl~~ai~i~~~~~-~~~~aw~~cl~lk~~g~LAkpt--H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  351 FPHVVKEVRGRGLLNAIVINPSKT-SGQDAWDVCLALKENGLLAKPT--HGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ccchhheeeccceEEEEEeccccc-cchhHHHHHHcccccccccCCC--CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            45 578999999999999975432 2346778888999999999885  799999999999999999999999999875

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.63  E-value=3e-15  Score=105.74  Aligned_cols=78  Identities=33%  Similarity=0.572  Sum_probs=66.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC-chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL-RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~-~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +||.++++||.|+|++++|.++... ..+.+..+.+.|+++|+++.+.+  .+++||+||+++|++|||++++++++++.
T Consensus       361 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  438 (441)
T PRK05769        361 KYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG--KSAIRIIPPLIITEEEADIGLEILEEAIK  438 (441)
T ss_pred             hCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            4788999999999999999765311 13456778899999999998764  58999999999999999999999999986


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       439 ~  439 (441)
T PRK05769        439 E  439 (441)
T ss_pred             H
Confidence            4

>PRK06541 hypothetical protein; Provisional

Probab=99.63  E-value=3.1e-15  Score=106.21  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=64.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc----hH-----HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR----KA-----ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~-----~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.|.++||.|+|+++||+++..++    ..     ....+...|+++|+++.+.+...++|||+|||++|++|||+++
T Consensus       367 ~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~  446 (460)
T PRK06541        367 DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIE  446 (460)
T ss_pred             cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHH
Confidence            36888999999999999998643221    11     1235778999999999875333589999999999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      +++++++.+
T Consensus       447 ~~l~~~l~~  455 (460)
T PRK06541        447 QILRSVLTE  455 (460)
T ss_pred             HHHHHHHHH
Confidence            999999863

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.61  E-value=1.8e-15  Score=107.64  Aligned_cols=71  Identities=27%  Similarity=0.458  Sum_probs=62.2

Q ss_pred             CCC-ceeeec--ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYG-TIGDAR--GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~-~v~~vR--g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +|| .|++||  |.|+|+++++.+     ...+..+.+.|+++|+++...+  .++|||.|||++|++|+|+++++|+++
T Consensus       391 ~~~~~i~~vRg~G~Glm~gie~~~-----~~~~~~i~~~~~~~Gvl~~~~g--~~~ir~~Ppl~it~~eid~~~~~l~~~  463 (464)
T TIGR00699       391 KYPEFIQNLRGKGRGTFIAWDTPD-----EAKRDKLLKKARNNGVNIGGCG--VKAIRLRPMLVFQKHHADIFLEIISKI  463 (464)
T ss_pred             hCCCceeeecccCeEEEEEEecCC-----HHHHHHHHHHHHHCCcEEecCC--CCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            478 799999  999999999942     1356789999999999998764  589999999999999999999999987


Q ss_pred             H
Q 042283           79 M   79 (82)
Q Consensus        79 l   79 (82)
                      +
T Consensus       464 ~  464 (464)
T TIGR00699       464 I  464 (464)
T ss_pred             C
Confidence            5

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.61  E-value=5.3e-15  Score=110.76  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      +||.|++|||+|+|+||||+++..+.   ...+..+.+.|+ ++|+++++.   +|+|+++||++++++|++++++++++
T Consensus       738 ~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~---Gnvi~l~pP~~i~~e~l~~~~~~l~~  814 (817)
T PLN02974        738 SLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL---GNVVYLMCGPTTSPETCTRLLRKVYR  814 (817)
T ss_pred             hCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            58899999999999999998754321   235678889999 999999986   58999999999999999999999998


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      .|.
T Consensus       815 ~~~  817 (817)
T PLN02974        815 RLS  817 (817)
T ss_pred             HhC
Confidence            873

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.59  E-value=8.1e-15  Score=102.67  Aligned_cols=75  Identities=23%  Similarity=0.411  Sum_probs=65.7

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++| .+.++||.|+|++++|.+.     ..+..+...|+++|+++.+++..+++|||+|||++|++|+|+++++++++|+
T Consensus       337 ~~~~~~~~vrg~Gl~~~l~l~~~-----~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       337 EYPELIKQVRGRGLMQGIECGDG-----DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             hCCCceEeeecceeEEEEEecCh-----HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            356 5789999999999999643     2567889999999999988766679999999999999999999999999987


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       412 ~  412 (412)
T TIGR02407       412 E  412 (412)
T ss_pred             C
Confidence            5

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.56  E-value=3.3e-14  Score=99.89  Aligned_cols=79  Identities=37%  Similarity=0.569  Sum_probs=66.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc-hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR-KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~-~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +|+.+.++||.|+|++++|.++...+ ...+..+.+.++++|+++.+++..++++||.||+++|++||++++++++++++
T Consensus       349 ~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~  428 (433)
T PRK08117        349 KHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT  428 (433)
T ss_pred             cCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence            47788899999999999998653211 34566788999999999987765679999999999999999999999999985

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.55  E-value=2e-14  Score=101.64  Aligned_cols=73  Identities=23%  Similarity=0.451  Sum_probs=62.7

Q ss_pred             CCCcee-eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIG-DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~-~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +||.+. +|||.|+|++++|.+.     .....+...|+++|+++.+++  .+++||+|||++|++|+|++++++++++.
T Consensus       368 ~~~~~~~~vrg~G~~~~i~~~~~-----~~~~~~~~~l~~~Gvl~~~~~--~~~lr~~P~l~~t~~eid~~l~~l~~~l~  440 (443)
T PRK08297        368 EFPAVVSNVRGRGLMCAFDLPTT-----ADRDEVIRRLWEEGVLVLPCG--ERSIRFRPALTVTTEEIDAAIDALRRALP  440 (443)
T ss_pred             HCCCcceeeeccceEEEEEecCH-----HHHHHHHHHHHHCCEEEecCC--CCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            467665 9999999999999532     356678899999999998864  58999999999999999999999999986


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       441 ~  441 (443)
T PRK08297        441 E  441 (443)
T ss_pred             h
Confidence            4

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.54  E-value=7.3e-14  Score=97.91  Aligned_cols=79  Identities=27%  Similarity=0.430  Sum_probs=66.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++|.+.++||.|+|++++|.++...  ....+..+.+.|+++||++.+++..++++||+||+++|++++++++++++++|
T Consensus       339 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l  418 (420)
T TIGR00700       339 VDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL  418 (420)
T ss_pred             hCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence            4677899999999999999743211  13456788899999999999876567999999999999999999999999998


Q ss_pred             h
Q 042283           80 T   80 (82)
Q Consensus        80 ~   80 (82)
                      +
T Consensus       419 ~  419 (420)
T TIGR00700       419 A  419 (420)
T ss_pred             h
Confidence            5

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.54  E-value=7.7e-14  Score=98.63  Aligned_cols=79  Identities=34%  Similarity=0.565  Sum_probs=66.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.+.++||.|+|+++++..+..+   ....+..+.+.|+++|+++.+++..++++||.||+++|+++||+++++|+++
T Consensus       361 ~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~  440 (451)
T PRK06918        361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEES  440 (451)
T ss_pred             hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence            4677899999999999999743321   1345778889999999999987655799999999999999999999999999


Q ss_pred             Hh
Q 042283           79 MT   80 (82)
Q Consensus        79 l~   80 (82)
                      +.
T Consensus       441 l~  442 (451)
T PRK06918        441 LQ  442 (451)
T ss_pred             HH
Confidence            85

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.52  E-value=9.2e-14  Score=97.85  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=62.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +++.+.++||.|+|++++|.++.     .+..+...|+++||++.+.   +++++|.|||++|++|||+++++++++|++
T Consensus       355 ~~~~i~~vrg~G~~~~i~~~~~~-----~~~~~~~~l~~~Gv~~~~~---~~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       355 KNPVVKDVRVLGAIGVVEMYKPV-----NVEELQKKFVEQGVWIRPF---GKLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             cCCCEEeEeccccEEEEEECCcc-----CHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            35678899999999999996432     3467889999999999875   479999999999999999999999999976

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.51  E-value=1.3e-13  Score=96.63  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=64.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.+.++||.|+|+++++.++..  ...+..+...++++|+++.+.   ++++||+|||++|++|||++++++++++++
T Consensus       348 ~~~~i~~vrg~Gl~~~i~l~~~~~--~~~~~~l~~~l~~~Gv~v~~~---~~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        348 DLPGVADVRVLGAIGAVELDRPVL--ERDGPALRAFALERGVLLRPL---GNTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             cCCCeEEeecccEEEEEEeccCcc--hhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence            467788999999999999975421  124567889999999999875   489999999999999999999999999976

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.50  E-value=1.3e-13  Score=96.21  Aligned_cols=70  Identities=23%  Similarity=0.458  Sum_probs=58.1

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHc---CceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM---GVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~---Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++ +.++||.|+|++|++.++      .+..+.+.++++   |+++..++  +++|||+||+++|++|+|+++++|++++
T Consensus       321 ~~-i~~vrG~Glm~~i~l~~~------~~~~~~~~~~~~~~~Gi~~~~~~--~~~lR~~p~l~~t~~ei~~~~~~l~~~l  391 (395)
T PRK03715        321 RG-LEGERGEGLLRALLLGKD------IGPQIVEKARDMQPDGLLLNAPR--PNLLRFMPALNVTTEEIDQMIAMLRSVL  391 (395)
T ss_pred             CC-cCeEEcceeEEEEEecCc------hHHHHHHHHHhccCCCEEEeecC--CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence            44 788999999999999753      234566666666   99987653  6899999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       392 ~~  393 (395)
T PRK03715        392 DK  393 (395)
T ss_pred             Hh
Confidence            64

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.48  E-value=1.5e-13  Score=96.85  Aligned_cols=70  Identities=24%  Similarity=0.487  Sum_probs=60.3

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ++| .+.++||.|+|++++|...     ..+..+.+.|+++|+++.+.+  .+++||+|||++|++|+|+++++++++
T Consensus       361 ~~~~~i~~vrg~G~~~~i~~~~~-----~~~~~~~~~l~~~Gvl~~~~g--~~~lr~~P~l~~t~~eid~~l~~l~~~  431 (431)
T TIGR03251       361 EFPHLVSNPRGRGLMCAFDLPST-----ADRDEVIRQLYREGVLLLGCG--ERSIRFRPPLTVTREEIDAAIDAIRRV  431 (431)
T ss_pred             hCccceecccccceeEEEEeCCH-----HHHHHHHHHHHhCCeEEecCC--CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence            467 8899999999999999532     246678899999999998764  489999999999999999999999874

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.47  E-value=2.4e-13  Score=95.56  Aligned_cols=74  Identities=23%  Similarity=0.432  Sum_probs=64.0

Q ss_pred             CCCc-eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGT-IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~-v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +||. +.++||.|+|+++++.+.     ..+..+.+.|+++|+++.+++...++|||+|||++|++|+++++++++++++
T Consensus       341 ~~~~~~~~vrg~Gl~~~i~l~~~-----~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~  415 (425)
T PRK09264        341 KYPGLGAEVRGRGMMQGIDFGDG-----ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVA  415 (425)
T ss_pred             hCCCceecceecccEEEEEecCh-----HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            3664 489999999999999642     3567889999999999988765679999999999999999999999999875

>PLN00144 acetylornithine transaminase

Probab=99.47  E-value=3.1e-13  Score=93.91  Aligned_cols=72  Identities=21%  Similarity=0.488  Sum_probs=62.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +||.+.++||.|+|++++|..       .+..+...|+++|+++.+++. +++|||.||+++|++|+++++++|++++.+
T Consensus       309 ~~~~~~~vrg~G~~~~l~l~~-------~~~~~~~~~~~~Gv~i~~~~~-~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        309 GNPHVKEVRGVGLLVGIQLDV-------PAGPLVDACRDSGLLVLTAGK-GDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             hCCCceeeecCceEEEEEecC-------ccHHHHHHHHHCCeEEeecCC-CCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence            577889999999999999932       235688899999999988643 599999999999999999999999999864

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.42  E-value=2.3e-12  Score=90.42  Aligned_cols=80  Identities=25%  Similarity=0.434  Sum_probs=67.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ++|.+.++||.|+|++++|.++..+   ....+..+...|+++|+++.+++..++++||.||+++|++||++++++++++
T Consensus       341 ~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~  420 (425)
T PRK08088        341 KHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQC  420 (425)
T ss_pred             hCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence            4677889999999999999654321   1345778999999999998877656799999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +.+
T Consensus       421 l~~  423 (425)
T PRK08088        421 FDE  423 (425)
T ss_pred             HHh
Confidence            863

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.41  E-value=1.9e-12  Score=90.10  Aligned_cols=75  Identities=20%  Similarity=0.424  Sum_probs=63.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|+.+.++||.|+|+++++.+..   ...+..++..|+++|+++.+.+  .+++||.||+++|++|+|++++++++++.+
T Consensus       321 ~~~~~~~vrg~G~~~~i~~~~~~---~~~~~~~~~~l~~~Gv~~~~~g--~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       321 RYNVFSEIRGKGLLIGAVLTEAY---QGKAKQFVNAAAEEGVIALIAG--PNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             cCCCeEeeecCceEEEEEEcCch---hhHHHHHHHHHHHCCeEEeecC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            36778999999999999997531   1246688899999999998764  589999999999999999999999999863

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.41  E-value=1.6e-12  Score=90.68  Aligned_cols=74  Identities=23%  Similarity=0.458  Sum_probs=62.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +++.+.++||.|+|+++++.++.   ...+..+.+.|+++|+++.+++  .+++||.||+++|++|++++++++++++.
T Consensus       325 ~~~~~~~vrg~Gl~~~~~l~~~~---~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~p~~~~t~~~i~~~~~~l~~~l~  398 (406)
T PRK12381        325 RYGLFSEIRGLGLLIGCVLNAEY---AGKAKQISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEITTGLDRFARACE  398 (406)
T ss_pred             hCCCEEEEecCeEEEEEEecCch---hhHHHHHHHHHHHCCcEEeeCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence            35678899999999999997531   1245678899999999998764  58999999999999999999999999885

>PLN02624 ornithine-delta-aminotransferase

Probab=99.36  E-value=6.1e-12  Score=89.68  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=62.7

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++| .+.++||.|+|++|++..+. .....+..+.+.|+++||++.+.+  +++|||+||+++|++||++++++|++++.
T Consensus       367 ~~~~~i~~vrg~G~~~~i~l~~~~-~~~~~a~~~~~~L~e~GV~v~p~~--~~~lR~~p~l~~t~e~id~~l~~L~~~l~  443 (474)
T PLN02624        367 QFPKLIKEVRGRGLLNAVVLNSPK-LGPVSAYDVCLKLKERGLLAKPTH--DTIIRLAPPLSISEDELQECSKALSDVLE  443 (474)
T ss_pred             hCCCceEEEEeeEEEEEEEecCCC-cChHHHHHHHHHHHhCCeEEecCC--CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            356 57899999999999995432 112356678889999999998764  68999999999999999999999999875

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.34  E-value=1.1e-11  Score=85.76  Aligned_cols=71  Identities=23%  Similarity=0.427  Sum_probs=61.9

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+.++||.|+|+++++..+      .+..+.+.|+++|+++.+.+  .++|||+||+++|++|+++++++|++++.+
T Consensus       324 ~~~~~~v~g~g~~~~i~~~~~------~~~~~~~~l~~~Gv~~~~~~--~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        324 HPLVDHVRGRGLLLGIVLTAP------VAKAVEAAAREAGFLVNAVA--PDVIRLAPPLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             CCceeeEeeccEEEEEEEecc------HHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            567789999999999999532      45678899999999998753  689999999999999999999999999853

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.31  E-value=1.5e-11  Score=85.39  Aligned_cols=69  Identities=28%  Similarity=0.515  Sum_probs=59.1

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++.+.++||.|+|+++++..       .+..+.+.++++|+++.+.+  +++|||+|||++|++|+|+++++|++++.
T Consensus       328 ~~~i~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~Gv~~~~~~--~~~iRi~p~l~~t~e~i~~~~~~l~~~l~  396 (396)
T PRK04073        328 NPMIKEVRGRGLFIGVELNE-------PARPYCEALKEEGLLCKETH--ETVIRFAPPLVITKEELDWAFEKIKAVLS  396 (396)
T ss_pred             CCcccceecceEEEEEEecc-------hHHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHHhC
Confidence            35678899999999999853       24578888999999998753  58999999999999999999999999863

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.29  E-value=3.1e-11  Score=83.92  Aligned_cols=73  Identities=25%  Similarity=0.433  Sum_probs=61.5

Q ss_pred             CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.+.++||.|+|+++++..+..  ...+..+.+.|.++|+++.+.+  ++++||.||+++|++||++++++|+++++
T Consensus       329 ~~~~~~~g~g~~~~i~~~~~~~--~~~~~~l~~~l~~~Gv~v~~~~--~~~lRi~p~l~~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       329 PIITEVRGRGLLNAIVIDESKT--GRTAWDLCLKLKEKGLLAKPTH--GNIIRLAPPLVITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             CceeEEeecCeeEEEEeccCcc--hhHHHHHHHHHHhCCEEEEecC--CCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence            5678899999999999964321  1246788899999999998763  68999999999999999999999999874

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.28  E-value=2.9e-11  Score=83.60  Aligned_cols=71  Identities=27%  Similarity=0.560  Sum_probs=61.4

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++| .+.++||.|+|+++++..+       +..+.+.|+++||++.+.+  .+.+||+||+++|++++++++++|+++++
T Consensus       317 ~~~~~~~~v~g~G~~~~i~~~~~-------~~~~~~~l~~~GV~~~p~~--~~~lR~~p~~~~~~~~i~~~l~~l~~~l~  387 (389)
T PRK01278        317 RFPDVIEEVRGKGLLLGLKCVVP-------NRDLVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEALERLERAAE  387 (389)
T ss_pred             hCCCceeeEecccEEEEEEEecC-------HHHHHHHHHHCCeEEeecC--CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence            356 6789999999999999532       4578889999999998864  68999999999999999999999999986


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       388 ~  388 (389)
T PRK01278        388 S  388 (389)
T ss_pred             h
Confidence            4

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.18  E-value=2.7e-10  Score=78.78  Aligned_cols=74  Identities=24%  Similarity=0.410  Sum_probs=61.9

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++.+.++|+.|+|.++++..+..   ..+..+.+.|+++|+++.+.  .+++|||.||++++++++++++++|++++.+
T Consensus       322 ~~~~~~~~~~g~~~~v~~~~~~~---~~~~~~~~~l~~~Gv~v~~~--~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        322 SPWVKEIRGKGLLNAIVFDHSDG---VNAWDLCLKLKENGLLAKPT--HDNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             CCCeEEEecccEEEEEEEccCcc---hHHHHHHHHHHHCCeEEeec--CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            56678899999999999964221   24567888999999999875  3689999999999999999999999998853

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.13  E-value=3.5e-10  Score=78.01  Aligned_cols=69  Identities=26%  Similarity=0.555  Sum_probs=59.1

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +++.+.++||.|+|+++++..       .+.++.+.|+++|+++.+.+  .+.+||.||+++|++|++++++++++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~Gi~v~~~~--~~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        307 DKETVTTVRGLGYMIGIETTA-------DLSQLVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             hCCCeeEEeccceEEEEEecC-------cHHHHHHHHHhCCCEEecCC--CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            356678999999999999942       24578899999999998764  5899999999999999999999998864

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.12  E-value=5.1e-10  Score=78.91  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             CCCceeee-cccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDA-RGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~v-Rg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +||.+.++ ||.| |++++|.++....        ...+..+...|+++|+++.+.+  .++  +.|||++|++|+|+++
T Consensus       344 ~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~--~~~~l~~t~e~id~~~  418 (428)
T PRK12389        344 KHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK--YEA--WFLTTAHTEEDIEETL  418 (428)
T ss_pred             hCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC--CCC--eeecCCCCHHHHHHHH
Confidence            47777777 8888 7799997543211        2346678899999999998764  233  4699999999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      +++++++++
T Consensus       419 ~~l~~~l~~  427 (428)
T PRK12389        419 EAVDRAFAQ  427 (428)
T ss_pred             HHHHHHHHh
Confidence            999999975

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.12  E-value=4.8e-10  Score=77.14  Aligned_cols=69  Identities=29%  Similarity=0.580  Sum_probs=59.4

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +++.+.++|+.|+|+.+++.++       +..+.+.+.++|+++.+.+  .+.+||.||++++++++++++++|+++|
T Consensus       309 ~~~~~~~v~~~g~~~~i~~~~~-------~~~~~~~l~~~gv~v~~~g--~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        309 HLECVKNIRGKGLMIGIECTEE-------VAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             hCCcEEeEeecceEEEEEecch-------HHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            3677888999999999999642       4567888999999998864  5899999999999999999999999875

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.11  E-value=8e-10  Score=76.65  Aligned_cols=70  Identities=24%  Similarity=0.517  Sum_probs=59.5

Q ss_pred             ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            5 TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         5 ~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.++||.|+|+++++..+.    .....+++.++++|+++.+.+  +++|||+||+++|+++|+++++++++++.
T Consensus       331 ~~~~~~g~g~~~~i~~~~~~----~~~~~~~~~L~~~GV~v~~~~--~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        331 IVREVRGRGLMLAVELEPEA----GGARQYCEALKERGLLAKDTH--DHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             ceEEEeccceEEEEEEecCc----hhHHHHHHHHHHCCeEEecCC--CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            45778999999999996542    245678899999999997653  68999999999999999999999999875

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.10  E-value=5.9e-10  Score=78.45  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +++.+.++||.|+|+++++.++..+        ....+..+...|+++|+++.+++  .+++++  ++++|++|+|++++
T Consensus       341 ~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~~ei~~~~~  416 (426)
T PRK00062        341 KAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ--FEAGFV--SAAHTDEDIEKTLE  416 (426)
T ss_pred             HcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC--cCceee--eccCCHHHHHHHHH
Confidence            4677889999999999999754321        12345789999999999998864  356654  59999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      ++++++++
T Consensus       417 ~l~~~l~~  424 (426)
T PRK00062        417 AARKAFAA  424 (426)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.07  E-value=1.3e-09  Score=75.22  Aligned_cols=70  Identities=33%  Similarity=0.630  Sum_probs=60.2

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+.++||.|+|+++++..       ....+.+.++++|+++.+++  .+.+||+||++++++|+++++++|++++++
T Consensus       325 ~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        325 YPGIKEVRGLGLMIGIELDR-------PAAEIVKKALEKGLLINVTG--DNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             CCCeeeeccCcEEEEEEecC-------cHHHHHHHHHHCCeEEeecC--CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            56677899999999999932       24578889999999998864  588999999999999999999999998864

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.04  E-value=2.4e-09  Score=74.55  Aligned_cols=74  Identities=26%  Similarity=0.514  Sum_probs=61.2

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++.+.++||.|+|+++++.++.   ...+.+++..|+++|+++.+.+  .+.+||.||++++++++++++++|+++++.
T Consensus       327 ~~~~~~~~~~G~~~~~~l~~~~---~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~  400 (403)
T PRK05093        327 YGVFSEIRGMGLLIGAELKPQY---KGRARDFLNAAAEEGVMVLVAG--PDVLRFAPSLVIEEADIDEGLARFEKAVAK  400 (403)
T ss_pred             CCCeEeEeeCceEEEEEecCcc---hhHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4556789999999999996421   1245678899999999998754  589999999999999999999999998853

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.02  E-value=2.6e-09  Score=74.75  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +++.+.++||.|+|+++++..+..++        ...+..+.+.|+++||++.+.+  .++++|+||  +|++|++++++
T Consensus       339 ~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~l~~~--~t~~~i~~~~~  414 (423)
T TIGR00713       339 DTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ--FEACFLSAA--HTEEDIENTIE  414 (423)
T ss_pred             hcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC--ccceeeECC--CCHHHHHHHHH
Confidence            46677899999999999997532110        1235578889999999987653  467899998  79999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      ++++++++
T Consensus       415 ~l~~~l~~  422 (423)
T TIGR00713       415 AAEEVFAE  422 (423)
T ss_pred             HHHHHHhh
Confidence            99999864

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK07046 aminotransferase; Validated

Probab=98.96  E-value=5.5e-09  Score=74.41  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV   72 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~   72 (82)
                      +++.+.++||.|+|++++|.++....         ......+...|+++|+++.+.   ++.++++||  +|++|||+++
T Consensus       367 ~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~~~~~p~--~t~~did~~~  441 (453)
T PRK07046        367 RHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF---HNMMLVCPA--TTAADVDRLV  441 (453)
T ss_pred             hCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc---cCcEEEeCC--CCHHHHHHHH
Confidence            46777899999999999996532211         234556788899999999874   477889998  8999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++++++|++
T Consensus       442 ~~~~~~l~~  450 (453)
T PRK07046        442 AAFDACLGE  450 (453)
T ss_pred             HHHHHHHHH
Confidence            999999863

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=98.94  E-value=2.2e-09  Score=74.92  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             CCCceeeeccc--------ceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCC-CCEEEEecCccc-----
Q 042283            2 KYGTIGDARGW--------GFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFY-GNVFRIAPPLCF-----   63 (82)
Q Consensus         2 ~~~~v~~vRg~--------Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~-~~~i~~~PPL~i-----   63 (82)
                      .+|.|+++||.        |.|++|++.++..+.    ......+.+.++++|+++.+.+.+ ...+++.||++|     
T Consensus       282 ~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~  361 (392)
T PLN03227        282 SHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN  361 (392)
T ss_pred             CCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec
Confidence            46788999994        447999995432111    113458889999999999875411 134679999999     


Q ss_pred             ---CHHHHHHHHHHHHHhHhc
Q 042283           64 ---TKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        64 ---~~~eid~~~~~l~~~l~~   81 (82)
                         |++|+|++++++++++++
T Consensus       362 ~~~t~eei~~~~~~l~~~~~~  382 (392)
T PLN03227        362 ASHTREDIDKLLTVLGEAVEA  382 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence               999999999999998853

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.92  E-value=2.8e-09  Score=74.30  Aligned_cols=73  Identities=26%  Similarity=0.428  Sum_probs=65.0

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +|| .+.+.||+|.|+++++.+++     ..++++..++-+|+.+..||  ...|||.|.|++.+.+.+.+++++++.|+
T Consensus       410 ~~p~~~~~~RGrGTF~a~d~ps~~-----~Rdk~i~~~~~nGv~~GGCg--~~siRfRPsLvf~~~Ha~i~l~~~~k~l~  482 (484)
T KOG1405|consen  410 KYPGKINNLRGRGTFIAWDCPSGS-----IRDKLILIARLNGVNLGGCG--DKSIRFRPSLVFRKHHADIFLDIFDKILA  482 (484)
T ss_pred             hCchhhhcccccceEEEEeCCChH-----HHHHHHHHHHHcCceecccc--cceeeeccceeehhhhHHHHHHHHHHHhc
Confidence            577 57899999999999997643     67789999999999999886  78999999999999999999999999986


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      .
T Consensus       483 ~  483 (484)
T KOG1405|consen  483 G  483 (484)
T ss_pred             c
Confidence            4

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=98.87  E-value=2.3e-08  Score=69.14  Aligned_cols=75  Identities=33%  Similarity=0.634  Sum_probs=61.4

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++.+.++|+.|.|+++++.++..+.   ......+.+.++++|+++.+.+  ++.+|+.|++.+|++|++++++++++++
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         336 HPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             CCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            3567788999999999997542111   1356678899999999998864  6899999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK07505 hypothetical protein; Provisional

Probab=98.65  E-value=1.9e-07  Score=65.07  Aligned_cols=71  Identities=10%  Similarity=0.110  Sum_probs=54.3

Q ss_pred             eeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            7 GDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         7 ~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .++||.|+++......+    ...+..+.+.|+++|++++++.     ...++|||+||+++|++|+++++++|++++++
T Consensus       324 ~~~~g~~~~i~~~~~~~----~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        324 TEQSGSFLPIRLIYIGD----EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             hcCCCCCCCEEEEEeCC----HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            45688888864432221    1245678999999999998752     12379999999999999999999999999864

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.55  E-value=6.2e-07  Score=64.40  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             CCce-eeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            3 YGTI-GDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         3 ~~~v-~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +|.+ .++||   |++++|..+...        .......+.+.|+++|+++.+.+. +.   ..||+++|++|||++++
T Consensus       393 ~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~-~~---~~psl~ht~~dId~~l~  465 (474)
T PLN02482        393 HEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF-EA---GFTSLAHTEEDIDFTIA  465 (474)
T ss_pred             CCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC-CC---CcCCCCCCHHHHHHHHH
Confidence            3543 56666   889999764211        123456788999999999987542 11   24999999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      ++++++.+
T Consensus       466 al~~~l~~  473 (474)
T PLN02482        466 AAERVLAR  473 (474)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.53  E-value=4.1e-07  Score=64.37  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCccc----CHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF----TKEDANYLVDV   74 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i----~~~eid~~~~~   74 (82)
                      +++.+.++||.|+++++++......   .......+.+.++++|+++             ||++|    |++|||+++++
T Consensus       332 ~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-------------p~l~is~~ht~~dId~~l~~  398 (431)
T PRK06209        332 EHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM-------------PSLVVSYAHGDADIERTIDA  398 (431)
T ss_pred             hCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccc-------------ccccccccCCHHHHHHHHHH
Confidence            4677789999999999999743211   1234457788899999864             77888    99999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      +++++.+
T Consensus       399 l~~~l~~  405 (431)
T PRK06209        399 VHGALGV  405 (431)
T ss_pred             HHHHHHH
Confidence            9998853

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.51  E-value=8.7e-07  Score=62.97  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=54.4

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      +| +.++| .|+|++++|.++..++        .+....+...|+++||++.+......    ......|++|||+++++
T Consensus       348 ~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~----~ls~~ht~~did~~~~a  421 (433)
T PRK00615        348 FP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS----FLSSAHSMENLDYAQNV  421 (433)
T ss_pred             CC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc----ceecCCCHHHHHHHHHH
Confidence            45 88899 9999999998654321        23456788999999999987532222    23455699999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      ++++++.
T Consensus       422 ~~~~~~~  428 (433)
T PRK00615        422 LIDSLEK  428 (433)
T ss_pred             HHHHHHH
Confidence            9999863

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=98.46  E-value=1.2e-06  Score=60.09  Aligned_cols=64  Identities=33%  Similarity=0.603  Sum_probs=53.6

Q ss_pred             eeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            7 GDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         7 ~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..+++.|.|+.+++.++       ...+.+.|.++|+++.+.+  .+.+|++|+++.|+++++++++++++++
T Consensus       316 ~~~~~~g~~~~~~~~~~-------~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       316 KEVRGKGLMLGIELEAP-------CKDIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             CccccCceEEEEEecCc-------HHHHHHHHHHCCcEEeeCC--CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            35667899999988532       3578888999999999864  5899999999999999999999998864

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.34  E-value=2.7e-06  Score=59.34  Aligned_cols=69  Identities=14%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             eecccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC----C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG----F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g----~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+++.|.|+.+.+.+.     ..+..+.+.+++ +|+++++..    . ..+.||++||+.+|++|+|+++++|++++++
T Consensus       322 ~~~~~~~i~~v~~~~~-----~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~  396 (406)
T PRK13393        322 HLPNPSHIVPVMVGDP-----VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWAR  396 (406)
T ss_pred             cCCCCCCeEEEEeCCH-----HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence            3578899988865321     245678888887 599997642    1 2378999999999999999999999998753

>PRK07179 hypothetical protein; Provisional

Probab=98.04  E-value=3.3e-05  Score=53.91  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec-CC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG-GF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~-g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++++.|.+.++++...     ..+..+.+.+.++|++.... .+    ..+.+||+|+..+|++|+++++++|++++++
T Consensus       325 ~v~~~~~i~~l~~~~~-----~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        325 NIRSESQIIALETGSE-----RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             CCCCCCCEEEEEeCCH-----HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence            4567788888886421     13456778899999974321 11    2479999999999999999999999998764

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.99  E-value=3.7e-05  Score=52.60  Aligned_cols=65  Identities=12%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...|.|..+.+.+     .....++.+.|.++|+++.+++.     ..+.+|++|++.++++|+++++++|++++
T Consensus       316 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        316 DSQSAIQPLIVGD-----NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             CCCCCEEEEEeCC-----HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            4567777777632     12456788999999999976321     24789999999999999999999998864

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=97.95  E-value=5.2e-05  Score=52.80  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..|.++.+.+..     ...+..+.+.+++ +|+++++..     ...+.+|++||+..|++|+|+++++|++++++
T Consensus       325 ~~~~i~~i~~~~-----~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       325 NPSHIVPVIIGD-----AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR  396 (402)
T ss_pred             CCCCEEEEEeCC-----HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            346677776532     1245678888875 699987642     12368999999999999999999999998753

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=97.80  E-value=9.9e-05  Score=50.75  Aligned_cols=51  Identities=14%  Similarity=0.085  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.++++|+++...+     ...+.||++||+.++++|++++++++++++++
T Consensus       326 ~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       326 AQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             HHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            4578888999999885321     12378999999999999999999999998753

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=97.76  E-value=0.00017  Score=50.28  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+..+.+.+.     ..+..+.+.+++ +|+++++...     ..+.+|++|++.+|++|+++++++|+++++
T Consensus       327 ~~~iv~i~~~~~-----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~  396 (407)
T PRK09064        327 ESHIVPVMVGDP-----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA  396 (407)
T ss_pred             CCCEEEEEeCCH-----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            355666655321     245678888875 6999976421     236899999999999999999999999875

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=97.62  E-value=0.00016  Score=51.28  Aligned_cols=69  Identities=26%  Similarity=0.386  Sum_probs=50.2

Q ss_pred             eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEec--CcccC--HHHHHHHHHHHHHhH
Q 042283            6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAP--PLCFT--KEDANYLVDVMDCSM   79 (82)
Q Consensus         6 v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~P--PL~i~--~~eid~~~~~l~~~l   79 (82)
                      +...+|+|+++|+++..+       .+.....+.+.|+++...+.  -...+|++|  ++++.  +|.+.+.++++++.+
T Consensus       356 i~g~~grgl~ig~~~~~p-------~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l  428 (433)
T KOG1401|consen  356 ICGGVGRGLVIGFEFEGP-------VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKVL  428 (433)
T ss_pred             eeeeeeeEEEEEEEEeec-------hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHHHHHH
Confidence            444599999999999754       33455556666665544331  124799999  78888  999999999999988


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      .+
T Consensus       429 ~~  430 (433)
T KOG1401|consen  429 SA  430 (433)
T ss_pred             HH
Confidence            63

>TIGR01814 kynureninase kynureninase

Probab=97.50  E-value=0.00082  Score=46.96  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      .++.+.+|.+. .      .+..+.+.+.++|+++...  .++.||++| ++..|++|+|.++++|+++++
T Consensus       345 ~r~~~v~~~~~-~------~~~~~~~~L~~~gi~v~~~--~~~~iRiS~~~~~nt~~did~l~~~l~~~~~  406 (406)
T TIGR01814       345 QRGCQLSLTHP-V------PGKAVFQALIKRGVIGDKR--EPSVIRVAPVPLYNTFVDVYDAVNVLEEILD  406 (406)
T ss_pred             hcCCeEEEEec-C------CHHHHHHHHHHCCEEEecc--CCCeEEEechhccCCHHHHHHHHHHHHHHhC
Confidence            34556677663 1      2346788888999987643  357999999 899999999999999998763

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN02721 threonine aldolase

Probab=97.41  E-value=0.0014  Score=44.33  Aligned_cols=64  Identities=13%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +-|+.+++.....   .....+.+.+.++|+.+++.+  .+.+|+++++..+++|+++++++|++++..
T Consensus       289 ~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~~~--~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        289 TNIVYFDITDGSR---ITAEKLCKSLEEHGVLLMPGN--SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             ceEEEEEccCCcc---ccHHHHHHHHHhCCcEEecCC--CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            4456666643110   134578888999999999863  679999999999999999999999998753

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=97.39  E-value=0.0014  Score=44.37  Aligned_cols=66  Identities=17%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..|++..+.+.....   .....+.+.+.++|+++.+++. ..+.+||.+...++++|++++++.|++++
T Consensus       289 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       289 QSPIIVSFLYPDDPD---FDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             CCCcEEEEECCCCCc---chHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            345666666532110   1345788899999999987631 23789999988899999999999998764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=97.33  E-value=0.00099  Score=45.47  Aligned_cols=49  Identities=14%  Similarity=0.163  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.++|+++..+. .++++|++++...|++|++.+++.|+++++
T Consensus       322 ~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        322 PDEVREKLRERGWRVSVTR-CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            4578888899999998764 467899987778899999999999998875

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=97.29  E-value=0.0021  Score=44.24  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=47.9

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +.|.+..+.+..     ......+.+.+.++|+.+.+..     ...+.||+++++..+++|+++++++|++++++
T Consensus       323 ~~~~~~~~~~~~-----~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        323 GEHPIIPVMLGD-----AKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             CCCCEEEEEECC-----HHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            455565544321     1235678888999999886431     12368999999999999999999999998753

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=97.28  E-value=0.0019  Score=45.14  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=42.0

Q ss_pred             HHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           30 ETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        30 ~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.++.+.++ ++|+++.+...     ....+|++|++..|++|+|.++++|++++++
T Consensus       340 ~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~  397 (410)
T PRK13392        340 LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDR  397 (410)
T ss_pred             HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            3567888886 68999986421     2368999999999999999999999988753

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.21  E-value=0.00067  Score=46.87  Aligned_cols=46  Identities=17%  Similarity=0.146  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283           30 ETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      .+..+.+.+.++|+++.... ...++||++|++..|++|||+++++|
T Consensus       352 ~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         352 RAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             HHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            45678888999999875421 13689999999999999999999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=97.18  E-value=0.002  Score=43.85  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++ |+.+.+..  ..++.||++|....|++|+++++++|+++++
T Consensus       304 ~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         304 GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             HHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            56788899988 99987642  1357999999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=97.10  E-value=0.0021  Score=43.29  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             HHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           39 KQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        39 ~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .++|+++.+.+  .+.|||+|++.++++|+++++++++++
T Consensus       301 ~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~  338 (338)
T cd06502         301 RGEGVLFYAWG--EGGVRFVTHWDTTEEDVDELLSALKAV  338 (338)
T ss_pred             hhCCEEEEecC--CCeEEEEeecCCCHHHHHHHHHHHhcC
Confidence            37899998764  489999999999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=97.02  E-value=0.0032  Score=42.58  Aligned_cols=60  Identities=17%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      .|.++.+.+...     .....+.+.+.++|+++.+..     ...+.+|++|+...+++|+++++++|+
T Consensus       296 ~~~~~~~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       296 CTPIVPVIIGDN-----ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CCCEEEEEeCCH-----HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            455666665321     135578889999999997531     124689999999999999999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=96.96  E-value=0.0048  Score=42.68  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.+... .+....||++|....|++|+|.+++.|+++++
T Consensus       299 ~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~  349 (370)
T PRK05937        299 EQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLE  349 (370)
T ss_pred             HHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            456778888999988642 12356899999999999999999999998874

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=96.93  E-value=0.0044  Score=41.85  Aligned_cols=49  Identities=18%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ...++.+.+.++|+.+.+++.     .++.+|+.|++..+++|+++++++|+++
T Consensus       295 ~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         295 KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            456788889999999876421     2479999999999999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=96.72  E-value=0.0063  Score=41.64  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ..+.+.+.++|+++..+. .++.+|+++....|++|+|.++++|++
T Consensus       328 ~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       328 EEVRKKLRDRGWYVSVTR-CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             HHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            468888999999998753 467999999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02483 serine palmitoyltransferase

Probab=96.67  E-value=0.013  Score=42.34  Aligned_cols=51  Identities=16%  Similarity=0.077  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+.+.++++|+.+.+.+.     ....+||+++...|++||++++++|+++++
T Consensus       410 ~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~  465 (489)
T PLN02483        410 KIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGD  465 (489)
T ss_pred             HHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            345688889999999986432     126899999999999999999999998864

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=96.66  E-value=0.01  Score=41.01  Aligned_cols=52  Identities=10%  Similarity=0.008  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           30 ETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+..+.+.+.++|+++....     .....+|+++.+..|++|+++++++|++++++
T Consensus       333 ~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       333 LAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             HHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            35678888999999886321     12257999999999999999999999998753

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=96.62  E-value=0.0068  Score=41.79  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCceeeecCC---------------------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+...+.++|+.++....                     ..+.+|++|....|++|||++++.|+++++
T Consensus       301 ~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~  371 (379)
T TIGR03402       301 GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA  371 (379)
T ss_pred             HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            35677778889999875310                     136899999999999999999999998875

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=96.54  E-value=0.024  Score=38.81  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=47.5

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..|.+..+++....     ....+.+.+.++|++++++...  .+.+|++..   +.+|++.++++|+++++.
T Consensus       302 ~~g~~~~i~~~~~~-----~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        302 SVGNFILVDFDDGK-----DAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLAA  366 (367)
T ss_pred             CCceEEEEECCCCC-----CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence            35778778773211     3557888888999999886432  468999964   889999999999998864

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=96.47  E-value=0.014  Score=40.49  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.++.+..          ..+.||++|....|++|++.+++.|+++++
T Consensus       335 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~  394 (398)
T TIGR03392       335 HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALE  394 (398)
T ss_pred             HHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            34677788899999886421          146899999999999999999999998875

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=96.46  E-value=0.022  Score=39.50  Aligned_cols=63  Identities=17%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +-+..+.+...      ....+.+.+.++|+.++...          ..+..+|++|++..|++|+++++++|+++++.
T Consensus       329 ~~~v~~~~~~~------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~  401 (403)
T TIGR01979       329 GGIISFNVEGV------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKF  401 (403)
T ss_pred             CceEEEEeCCc------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence            45666665321      24467788889999887421          01468999999999999999999999987753

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=96.32  E-value=0.024  Score=37.82  Aligned_cols=61  Identities=13%  Similarity=0.181  Sum_probs=45.2

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHH
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ....|.+..+++....     ....+.+.+.++|+.+.++..    .++.+|+.|+..  ++|++.++++++
T Consensus       285 ~~~~g~~~~~~~~~~~-----~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         285 KPSGGFFLWLDLPEGD-----DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             CCCccEEEEEecCCCC-----hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            3455777777775321     344566777788999887531    468999999999  999999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=96.30  E-value=0.03  Score=40.00  Aligned_cols=60  Identities=22%  Similarity=0.401  Sum_probs=42.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |.|+.++..+.      .++++++.|.+.||.+-+.|        ++.+.||++|.+= +-+|++..++.+.-|+
T Consensus       346 GYFIsld~~~G------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  346 GYFISLDVLDG------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCV  413 (425)
T ss_dssp             SS-EEEEESTT-------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCC------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHH
Confidence            78888887653      68899999999999887765        3678999999874 7889999999887765

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK06225 aspartate aminotransferase; Provisional

Probab=96.29  E-value=0.04  Score=38.11  Aligned_cols=65  Identities=11%  Similarity=0.294  Sum_probs=46.8

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...|.|..+++....    .....+.+.+.++|+.++++.     ...+.+|+.  +..+++|++++++.|.++++
T Consensus       306 ~~~g~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~  375 (380)
T PRK06225        306 PSHGNMMVIDISEAG----IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVE  375 (380)
T ss_pred             CCCCeEEEEEccccc----CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence            445778788875321    124567788889999988741     123578887  56689999999999999885

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=96.24  E-value=0.026  Score=39.26  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.++.+..          ..+.||+++..-.|++|+|.++++|+++++
T Consensus       338 ~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~  397 (401)
T PRK10874        338 HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALE  397 (401)
T ss_pred             HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence            35677888899999886421          146899999999999999999999998875

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=96.19  E-value=0.026  Score=39.31  Aligned_cols=49  Identities=14%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+...+.++|++++..+.  ..+++|++|-...|++|++.++++++++++
T Consensus       322 ~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~  372 (378)
T PRK03080        322 AAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE  372 (378)
T ss_pred             HHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            3466667777888765331  247899999999999999999999999875

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.018  Score=40.54  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.+|.+.+.++||+...-  .+++|||.| ||..+-+|+-..++.|+++|+.
T Consensus       352 ~~~~V~qaLi~rGVigD~R--~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         352 HGYQVMQALIDRGVIGDFR--EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             cHHHHHHHHHHcCcccccc--CCCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence            4678999999999998763  589999988 7999999999999999999864

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=95.96  E-value=0.047  Score=37.42  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.+.+... ..+.+|+.+-.-.+.+|+++++++|++++.
T Consensus       311 ~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       311 FADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             HHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            34678888999999987532 257999998555799999999999999874

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=95.92  E-value=0.045  Score=37.48  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=42.8

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ..+.+..+.+...      ...++.+.+.++|+.+.....          ..+.||+++....|++|+|+++++|
T Consensus       305 ~~~~~~~~~~~~~------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         305 DRAGVVSFNLEGI------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             ccCCeEEEEECCc------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            3455666665321      245788888999998864321          2578999999999999999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=95.85  E-value=0.061  Score=36.51  Aligned_cols=56  Identities=14%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC---CCEEEEecCcccCHHHHHHHHHHHH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY---GNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~---~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ..|.++.+++..       .+.++.+.+.++|+++.++...   .+.+|++..   +++|++++++.|+
T Consensus       288 ~~g~~~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       288 SDANFVLIRFPR-------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             CcCCEEEEecCC-------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence            357777777742       2456888899999999886422   588999965   8999999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK02948 cysteine desulfurase; Provisional

Probab=95.76  E-value=0.031  Score=38.57  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHcCceeeecCC---------------------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+...+.++|+.++.+..                     ..+.+|+++....|++|+|.+++.|+++++
T Consensus       303 ~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~  373 (381)
T PRK02948        303 GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN  373 (381)
T ss_pred             HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            34566677889999985321                     136899999999999999999999998875

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=95.73  E-value=0.033  Score=38.58  Aligned_cols=48  Identities=23%  Similarity=0.432  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHcCce-eeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVL-IGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll-~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+.+.++|++ +++.  ..+.+|++. ...+++|+++++++|++++++
T Consensus       320 ~~~~~~~L~e~GI~~ir~~--~~~~iRis~-~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       320 GYFLYEELKKRGIHGIRSG--QTKYFKLSV-YGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             cHHHHHHHHhCCCccccCC--cceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence            34688899999997 6653  256899997 468999999999999998753

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=95.67  E-value=0.12  Score=35.29  Aligned_cols=59  Identities=12%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |.+.-+++ +.     .....+.+.+.++|++++++..    ..+.+|++..   +.+|+++++++|+++++
T Consensus       299 ~~~i~~~~-~~-----~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        299 ANFVLVDV-TP-----MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIVE  361 (361)
T ss_pred             ceEEEEEC-CC-----CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHhC
Confidence            45555666 21     1355788888999999987531    2468999955   88999999999998763

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=95.57  E-value=0.048  Score=37.68  Aligned_cols=50  Identities=12%  Similarity=0.221  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCceeee---cC--------------C----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGK---GG--------------F----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~---~g--------------~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+...+.++|+.++.   |.              .    ...+||+++....|++|+|++++.|+++++
T Consensus       304 ~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~  374 (382)
T TIGR03403       304 GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ  374 (382)
T ss_pred             HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            44566677889999984   21              0    136799999999999999999999998774

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02822 serine palmitoyltransferase

Probab=95.46  E-value=0.075  Score=38.45  Aligned_cols=51  Identities=14%  Similarity=0.021  Sum_probs=40.6

Q ss_pred             HHHHHHHHHH-HcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMK-QMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~-~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+++.++ ++|+++.+...       .+..+|++-....|++||+++++++++++.
T Consensus       418 ~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~  476 (481)
T PLN02822        418 LLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAA  476 (481)
T ss_pred             HHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            3567888887 88999986421       134699998888999999999999998875

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=95.39  E-value=0.071  Score=37.12  Aligned_cols=50  Identities=20%  Similarity=0.097  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+...+.++|+.+.......+++|+++-...|++|+|.+++.|++.+..
T Consensus       309 ~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        309 KKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             HHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            56667888999998443222578999999999999999999999998753

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=95.37  E-value=0.058  Score=37.32  Aligned_cols=45  Identities=20%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHcCceeeecC-------------CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQMGVLIGKGG-------------FYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-------------~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +..+.+.+.++|++++.+.             ...+.+|++|....|++|++.++++|
T Consensus       340 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       340 PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            4568888999999998651             13468999999999999999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=95.34  E-value=0.072  Score=37.45  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHc-CceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQM-GVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~-Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++ |+.++.+.          .....+|++|.+.-|++|++.+++.|+++++
T Consensus       357 ~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~  417 (424)
T PLN02855        357 PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA  417 (424)
T ss_pred             HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            44677888777 99887421          0136799999999999999999999998875

>PRK06108 aspartate aminotransferase; Provisional

Probab=95.33  E-value=0.13  Score=35.33  Aligned_cols=61  Identities=8%  Similarity=0.076  Sum_probs=43.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++.-+++....     ....+++.++ ++|+++.++..    ..+.+|++...  +++++++++++|.++++
T Consensus       316 g~~~~~~l~~~~-----~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        316 AMYAFFRIPGVT-----DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             eEEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            555556664221     2446777765 58999977421    25789999887  99999999999999875

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=95.32  E-value=0.12  Score=36.50  Aligned_cols=62  Identities=31%  Similarity=0.441  Sum_probs=49.5

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      .-+|.-+.+.|..+       ...+...+.++|++...-  ++|+||++| ||.=|-.++-.+++.|.++++
T Consensus       398 ~erGcQLsl~Fssp-------~~~vfqeL~krGv~~DkR--~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d  460 (465)
T KOG3846|consen  398 DERGCQLSLYFSSP-------TPKVFQELHKRGVIGDKR--RPNVIRVAPVPLYNTFSDVYIFVNALNEAMD  460 (465)
T ss_pred             ccccceEEEEeCCC-------chHHHHHHHHcCeecccc--CCCceEeecchhhccHHHHHHHHHHHHHHHH
Confidence            34467777777553       347889999999998763  699999999 577788999999999988875

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=95.26  E-value=0.12  Score=35.41  Aligned_cols=51  Identities=20%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.++++.. ..+.+|+..---.+++|++.+++.|++++++
T Consensus       312 ~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        312 FKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYW  363 (368)
T ss_pred             HHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            35788899999999987531 2468999864456899999999999998863

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=95.25  E-value=0.094  Score=36.41  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++.+.+.++|+.+........++|+++-...|++|+|.++++|++.++.
T Consensus       298 ~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       298 EKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             hHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            356667888999955443222468999999999999999999999987653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=95.23  E-value=0.12  Score=35.63  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.|.++|+++.+++ ..+.+|+.-   .+.++++.++++++++++
T Consensus       318 ~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~---~~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        318 RHAVWQGLLDRGVLIRDVG-IPGWLRVTI---GTPEENDAFLAALAEVLA  363 (368)
T ss_pred             HHHHHHHHHHCCEEEEeCC-CCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence            4568888999999998865 468999993   378999999999999875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=94.99  E-value=0.25  Score=33.88  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=44.3

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .-|+++-+++.+        ...+.+.+.++|+++.++..  ..+.+|++-   -+++++++++++|.++++
T Consensus       296 ~~g~f~~~~~~~--------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        296 SAGNFVLAEVGD--------ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA  356 (357)
T ss_pred             CCCCEEEEECCC--------HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence            457777777631        34577788899999998642  246899983   368999999999999875

>PRK10534 L-threonine aldolase; Provisional

Probab=94.93  E-value=0.1  Score=35.28  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|++++++    ..+|+.--+-+|++|+++++++|++.+.
T Consensus       287 ~~~~~~~l~~~gi~v~~~----~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        287 AAALGEYMRERNVLINAS----PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             HHHHHHHHHHcCeeecCC----ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            456778899999999874    4577766555799999999999997764

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=94.74  E-value=0.12  Score=37.39  Aligned_cols=51  Identities=18%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCceeeecC---CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGG---FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g---~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..+.+.+.++|+......   ...+.++++|-..-|++|||.++++|+++.+
T Consensus       394 ~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~  447 (481)
T PRK04366        394 RTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAE  447 (481)
T ss_pred             CHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHH
Confidence            35678899999998865221   1256899999999999999999999988764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=94.64  E-value=0.35  Score=33.44  Aligned_cols=63  Identities=11%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|.++-+++..+.    ..+..+.+.+.++|++++..+.  ..+.+|++--   +++|++.+++++++++.
T Consensus       300 ~~~~f~~~~~~~~~----~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~  364 (369)
T PRK08153        300 SATNFVAIDCGRDG----AFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALE  364 (369)
T ss_pred             CcCcEEEEECCCCc----ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence            34566655553211    2467888999999999964331  2468898843   89999999999999874

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=94.61  E-value=0.33  Score=35.13  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             eecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            8 DARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+.+.|-|..+-|.+.....        .+.-.++...++++|+++.++.  -+..-+++  -.|+++||..++++++++
T Consensus       351 ~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~--~ea~flS~--ahte~di~~~~~a~~~~~  426 (432)
T COG0001         351 TVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQ--FEAGFLST--AHTEEDIDRTLEAADEAF  426 (432)
T ss_pred             EEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcc--ccceeeec--ccCHHHHHHHHHHHHHHH
Confidence            56788999999998643222        1223345668899999998752  24455554  468999999999999988


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       427 ~~  428 (432)
T COG0001         427 KE  428 (432)
T ss_pred             HH
Confidence            63

>PRK05764 aspartate aminotransferase; Provisional

Probab=94.51  E-value=0.36  Score=33.39  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             HHHHHHHHH-HcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMK-QMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++...++ ++|+.+.++...  .+.+|++  +..+++++++++++|.+++++
T Consensus       340 ~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        340 SLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             HHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            356776665 579998875322  4789998  456899999999999998863

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=94.44  E-value=0.18  Score=35.70  Aligned_cols=50  Identities=16%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             HHHHHHHHHcCceeeecC--------CCCCEEEEecCc----ccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPL----CFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL----~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|+++...+        .....||+.+..    -++++|++++++.+++++.+
T Consensus       331 ~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        331 KDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             HHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            445577888999987521        124579999998    66799999999999998864

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=94.41  E-value=0.35  Score=33.05  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +...|.+.-+++..       ....+.+.+.++|+++.++..  ..+.+||.   +-+.+|.+.++++|++.
T Consensus       297 ~~~~g~~i~~~~~~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        297 YPSQTNFIFVDTGR-------DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL  358 (359)
T ss_pred             CCCcCcEEEEECCC-------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence            44557777776631       234677888899999998521  35789998   44999999999999875

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=94.38  E-value=0.16  Score=35.37  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHcC--ceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           30 ETLDVMDKMKQMG--VLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        30 ~~~~v~~~~~~~G--ll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ....+.+.+.++|  ++.++.....+.+++.|+ +++++|+|.++++|++.+
T Consensus       313 ~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       313 TAADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREIV  363 (363)
T ss_pred             CHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHhC
Confidence            3567888888777  777753334678999999 577999999999998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=94.37  E-value=0.14  Score=36.58  Aligned_cols=50  Identities=14%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCceeeecC-------CCCCEEEEecCcccC----HHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG-------FYGNVFRIAPPLCFT----KEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-------~~~~~i~~~PPL~i~----~~eid~~~~~l~~~l~   80 (82)
                      ...+...+.++|+++...+       ..+..||+.|+...+    ++|++++++.|.+++.
T Consensus       347 ~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        347 GSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             HHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            3456666767899985321       124689999988876    9999999999999885

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=94.33  E-value=0.23  Score=34.54  Aligned_cols=51  Identities=16%  Similarity=0.205  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.+.+..  ..++++|+..-...|++|++.++++|++++++
T Consensus       308 ~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       308 AATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             HHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence            4567778888999875431  12568999999999999999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=94.33  E-value=0.28  Score=34.22  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+...+.++|+.++...          ..+..+|++|.+.-|++|+|.++++|++..
T Consensus       344 ~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~  402 (406)
T PRK09295        344 AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH  402 (406)
T ss_pred             HHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            3456677788999887421          013579999999999999999999998764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=94.28  E-value=0.3  Score=33.53  Aligned_cols=47  Identities=11%  Similarity=0.055  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.++|++++.++ ..+.+|++  +.-+.+|.+.++++|++.++
T Consensus       286 ~~~l~~~l~~~GI~vr~~~-~~~~lRis--i~~~~~e~~~l~~al~~~~~  332 (339)
T PRK06959        286 AAALHAALARRGIWTRYFA-PPPSVRFG--LPADEAEWQRLEDALAECVP  332 (339)
T ss_pred             HHHHHHHHHhCCeEEEECC-CCCeEEEE--CCCCHHHHHHHHHHHHHHHH
Confidence            3568889999999999875 45689998  33578899999999988764

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=94.09  E-value=0.46  Score=32.91  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=42.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      -|.++-+++....     ....+.+.+.++|++++.+   .+.+|+.-   -+.+++++++++|.+++..
T Consensus       313 ~g~f~~~~l~~~~-----~~~~~~~~l~~~gi~v~~~---~~~lRls~---~~~~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        313 AANFLYLRLSQDA-----ALAALHQALKAQGTLVRHT---GGGLRITI---GTPEENQRTLERLQAALTQ  371 (374)
T ss_pred             cceEEEEeCCCCC-----CHHHHHHHHHHCCEEEEeC---CCeEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence            3566556664211     2456778889999999864   57899982   3567899999999998753

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=94.08  E-value=0.37  Score=32.80  Aligned_cols=47  Identities=19%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|++++..+.  ..+.+|+.-.   +++++++++++|++++.
T Consensus       304 ~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        304 AAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            45678888999999977642  2468999743   78999999999999875

>PRK03321 putative aminotransferase; Provisional

Probab=93.89  E-value=0.42  Score=32.62  Aligned_cols=57  Identities=12%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|+++-+.+..       ....+.+.+.++|+++.+++  .+.||+.   +-+.++.++++++++++++
T Consensus       294 ~g~~i~i~l~~-------~~~~~~~~l~~~gI~v~~~~--~~~iRi~---~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        294 QANFVWLPLGE-------RTADFAAAAAEAGVVVRPFA--GEGVRVT---IGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             CCCEEEEeCCC-------CHHHHHHHHHHCCEEEEccC--CCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence            47777666631       24578888899999998864  4569999   4799999999999999875

>PLN02955 8-amino-7-oxononanoate synthase

Probab=93.88  E-value=0.44  Score=34.85  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+..+.+.|+++|+++.+..     .....+|++-.---|++||+.++++|.++.+
T Consensus       404 ~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        404 EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHh
Confidence            456778999999999987542     1234699999999999999999999998765

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=93.78  E-value=0.33  Score=33.20  Aligned_cols=47  Identities=17%  Similarity=0.256  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHc-CceeeecC------------CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQM-GVLIGKGG------------FYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        31 ~~~v~~~~~~~-Gll~~~~g------------~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ...+.+.+.++ |+.++...            ...+.+|+.+..-.|++|++.++++|++
T Consensus       316 ~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       316 SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            45678888877 98886531            1347899999999999999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=93.77  E-value=0.31  Score=34.75  Aligned_cols=63  Identities=17%  Similarity=0.267  Sum_probs=46.0

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC----------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY----------GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~----------~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++-+.++.+..-      ....+...+.++|+.++.....          ..++|++|.+.=|++|+|.++++|++...
T Consensus       332 r~~~vsF~v~~~------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         332 RGGIVSFNVKGI------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CceEEEEEeCCC------CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            444555555321      3667888999999777753211          23499999999999999999999998764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=93.69  E-value=0.23  Score=33.55  Aligned_cols=49  Identities=20%  Similarity=0.225  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHcCceeeecC--CCCCEEEEecCccc-CHHHHHHHHHHHHHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCF-TKEDANYLVDVMDCS   78 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i-~~~eid~~~~~l~~~   78 (82)
                      ....+.+.+.++|.+..+..  .....+|+++-... |++|+|++++.|+++
T Consensus       294 ~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~~  345 (345)
T cd06450         294 LNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA  345 (345)
T ss_pred             HHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence            34578888889865443321  13578999998764 999999999999764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=93.69  E-value=0.37  Score=33.41  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             HHHHHHHHHcCceeeecC--------CCCCEEEEecCcc----cCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLC----FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~----i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|+.+.+..        ...+.+|+.+..+    ++++|++++++.|.+++.+
T Consensus       324 ~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         324 KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            355667788999996421        1346899988775    4799999999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=93.49  E-value=0.44  Score=34.00  Aligned_cols=50  Identities=16%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+..+...++++|+++.+..     .....||++|....|++||+.+++.+.++
T Consensus       333 ~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         333 ERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             HHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            467778889999999887542     12467999999999999999999999875

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=93.49  E-value=0.32  Score=34.41  Aligned_cols=49  Identities=24%  Similarity=0.207  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHcCceeee----cC-CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGK----GG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~----~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..++.+.+.++|+....    .. ...+.+|+++....|++|++++++.|++.+
T Consensus       393 ~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        393 AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            45788889998876421    11 113689999999999999999999998865

>PRK07682 hypothetical protein; Validated

Probab=93.47  E-value=0.82  Score=31.53  Aligned_cols=49  Identities=10%  Similarity=0.049  Sum_probs=37.4

Q ss_pred             HHHHHHHHH-HcCceeeecC---C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMK-QMGVLIGKGG---F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g---~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.++ ++|+.+.++.   . ..+.+|++-.  .+++++++++++|.+++++
T Consensus       323 ~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        323 SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence            346777765 6899998752   1 2578999844  4799999999999999865

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=93.27  E-value=0.47  Score=32.46  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |+++-+++....     ....+++.+.++|+++.++..    ..+.+|+.  +..++++++++++++.+
T Consensus       288 ~~~~~~~~~~~~-----~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       288 TFYLWVKVPSGI-----DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRLWER  349 (350)
T ss_pred             EEEEEEECCCCC-----CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHhc
Confidence            666667664321     245788888899999987432    14678986  34578999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=93.19  E-value=0.56  Score=32.28  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCC----------CEEEEecCcccCHHHHHHH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYG----------NVFRIAPPLCFTKEDANYL   71 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~----------~~i~~~PPL~i~~~eid~~   71 (82)
                      .++-+..+.+.. .     ....+.+.+.++|+.+.......          .++|++|....|++|+|++
T Consensus       307 ~~~~i~~~~~~~-~-----~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  307 RRPSIVSFNLPG-S-----DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             BGTTEEEEEETT-S-----SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             cccceEEEeecC-C-----CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            345566666622 1     35678888888899988732222          7999999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=92.90  E-value=0.51  Score=32.62  Aligned_cols=47  Identities=17%  Similarity=0.097  Sum_probs=36.4

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+...+.++|+.....-...+++|+++-.-.|++|+|.++++|++.
T Consensus       307 ~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         307 KEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             HHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            44556778899974332112478999999999999999999999884

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK06836 aspartate aminotransferase; Provisional

Probab=92.89  E-value=0.53  Score=32.81  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+++.+.++|+.+.++..  .++.+||.--  .+++++++++++|.+++++
T Consensus       341 ~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~  391 (394)
T PRK06836        341 DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKE  391 (394)
T ss_pred             HHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            44567888899999988632  2467998764  6899999999999999864

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=92.79  E-value=0.45  Score=33.16  Aligned_cols=48  Identities=19%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.++|+...+.+ .+.++++..+- .|++|++.++++|++++.
T Consensus       333 ~~~~~~~L~~~gI~~~~~~-~~~i~ri~~~g-~t~~di~~l~~aL~~i~~  380 (387)
T PRK09331        333 GFFLYEELKKRGIHGIKPG-ATKEFKLSTYG-LTWEQVEYVADAFKEIAE  380 (387)
T ss_pred             chhHHHHHHHcCceEEccC-CceEEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence            3568888999999854432 34566666644 899999999999998865

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=92.76  E-value=1.2  Score=31.43  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      -|+++-+++..       ....+...+.++||.+.++...     ++.+|+.-.. .+++++++++++|.++++
T Consensus       365 gg~f~~~~l~~-------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        365 DGLNLWLPLDT-------DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             CeEEEEEECCC-------CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence            36776666632       1346777888999999884311     3578888544 579999999999999886

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=92.76  E-value=0.76  Score=31.29  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.+.-+.+.        ....+.+.+.++|+.++++...    .+.+|++   +-+.++.+.++++|++.++
T Consensus       271 ~g~f~~~~~~--------~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~~~  332 (332)
T PRK06425        271 SANFITFMIP--------DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNALRNFLN  332 (332)
T ss_pred             CceEEEEEcC--------CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHhC
Confidence            4555555542        1356788888999999986432    3689988   5578999999999998763

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=92.75  E-value=0.56  Score=32.59  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|++++++   .+.+|++   +=+.+|.+.++++|++.++.
T Consensus       312 ~~~~~~l~~~GI~Vr~~---~~~iRis---~~~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        312 GEIYEACAHAGFIIRPF---PNGVRIT---VGTREQNEGVISVLQQHFEN  355 (366)
T ss_pred             HHHHHHHHHCCcEEccC---CCceEEe---CCCHHHHHHHHHHHHHHHHh
Confidence            46788899999999985   5779988   77889999999999998864

>PRK07324 transaminase; Validated

Probab=92.66  E-value=2  Score=29.79  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             HHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+++.++ ++||++.++..  ..+.+|+.  +..+++.+.+++++|.+++++
T Consensus       319 ~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        319 SEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             HHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            345677765 67999988642  24688887  566899999999999998864

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=92.59  E-value=0.53  Score=32.33  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..+.+.+.++|++....+ .++.+|+..+- .+++|++.++++|++++
T Consensus       315 ~~~~~~L~~~gI~~~~~~-~~~~~ri~~~g-~~~e~~~~l~~al~~~~  360 (361)
T cd06452         315 YFLYSELKKRGIHGIKPG-LTRYFKLSTYG-LTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             hhHHHHHHHcCceEEcCC-CceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence            468889999999865433 35678888744 79999999999998765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=92.45  E-value=1.3  Score=31.99  Aligned_cols=63  Identities=14%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++=+++....     ....+.+.+.++|+.+.+.|       ...|.+||..... +++++++++..|.+++.+
T Consensus       386 G~flwl~l~~~~-----~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         386 GLFLWLELPEGI-----DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             eEEEEEEcCCCC-----CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence            899988887543     36678999999999998843       1356899987765 489999999999988753

>PRK07908 hypothetical protein; Provisional

Probab=92.12  E-value=0.6  Score=31.91  Aligned_cols=47  Identities=13%  Similarity=0.254  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|+++.++..    ..+.+|++.   -+++|+++++++|++.+..
T Consensus       297 ~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        297 ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILKA  347 (349)
T ss_pred             HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHhc
Confidence            4677788899999987532    257899996   4889999999999988754

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=91.99  E-value=1  Score=31.56  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+.+.++|+++|.+..   ..+.+|++   +=|++|-+.++++|.+++..
T Consensus       304 ~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~  354 (356)
T COG0079         304 AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG  354 (356)
T ss_pred             HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence            55788999999999999843   34589988   66899999999999998753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=91.99  E-value=1.1  Score=31.43  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----------GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----------~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |+++-+++....    .....+.+.+.++||++.++...           .+.+|+.-.  -+++++++++++|.+++.
T Consensus       338 g~fiw~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~  410 (416)
T PRK09440        338 AIFLWLWFKDLP----ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVE  410 (416)
T ss_pred             ceEEEEECCCCC----CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            677666664311    02356777788999999875321           247888744  379999999999998875

>PRK05367 glycine dehydrogenase; Provisional

Probab=91.90  E-value=0.51  Score=37.25  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      .+.++.+.+.++|+..+..  ..+.++++|-.+-|++|||.+++.|.
T Consensus       393 ~~~~i~~~l~~~gi~~~~~--~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        393 DAAAVLARALAAGINLRRV--DDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             CHHHHHHHHHHCCceeccc--cCCEEEEEecccCCHHHHHHHHHHHc
Confidence            3567899999999998654  26789999999999999999999986

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=91.45  E-value=1.2  Score=30.59  Aligned_cols=44  Identities=11%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             HHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           32 LDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+.+.+.++|+.++.++.  .++.+|++   +-+++|++.+++++++-
T Consensus       307 ~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~~  352 (354)
T PRK04635        307 DAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRNQ  352 (354)
T ss_pred             HHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence            4567788899999987642  25689999   45899999999999763

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=91.44  E-value=1.6  Score=32.19  Aligned_cols=50  Identities=8%  Similarity=0.247  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCceeeecC----C----CCCEEEEecCc----ccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG----F----YGNVFRIAPPL----CFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g----~----~~~~i~~~PPL----~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.|.+.|+++....    +    ....|||.++-    -.+++|++++.+.|.++++
T Consensus       383 g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        383 GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence            3466678999999987431    1    15679999998    4579999999999998875

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=91.39  E-value=0.68  Score=36.77  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      .++.+.+.++|+.++...  .+.+++++-..-|++|||.++++|.
T Consensus       422 ~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~L~~~l~  464 (993)
T PLN02414        422 DAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDKLFKVFA  464 (993)
T ss_pred             HHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHHHHHHHc
Confidence            678899999999887653  6789999999999999999999996

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=91.19  E-value=1.2  Score=30.41  Aligned_cols=45  Identities=22%  Similarity=0.353  Sum_probs=35.7

Q ss_pred             HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..+.+.+.++|+.++++..    ..+.+|+.-.   +.++.+.++++|++++
T Consensus       308 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        308 AAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence            4677888999999987632    2468999855   7899999999998764

>PRK07568 aspartate aminotransferase; Provisional

Probab=90.90  E-value=1.6  Score=30.15  Aligned_cols=47  Identities=17%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             HHHHHHHHH------cCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQ------MGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~------~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+.+.+.+      +||++.++..       ..+.+|++  +..+++++++++++|.++++
T Consensus       332 ~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls--~~~~~~~~~~~~~~l~~~l~  391 (397)
T PRK07568        332 EDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA--YVLNEEDLKRAMEILKEALE  391 (397)
T ss_pred             HHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE--EeCCHHHHHHHHHHHHHHHH
Confidence            345555554      6999887421       13689998  45678999999999999875

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=90.74  E-value=1  Score=30.90  Aligned_cols=42  Identities=19%  Similarity=0.394  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ...+.+.+.++|++++.++.   ..+.+|++--   +++|.+.++++|
T Consensus       306 ~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al  350 (351)
T PRK01688        306 SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL  350 (351)
T ss_pred             HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence            35688889999999987642   2468999955   789999999876

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=90.71  E-value=1.5  Score=30.75  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |+++=+++....     ....+...+. ++||++.++..    ..+.+|+.  +..+++++++++++|.++|
T Consensus       345 ~~f~wi~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~  409 (409)
T PRK07590        345 APYIWVKTPDGM-----SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERIKKAL  409 (409)
T ss_pred             ceEEEEECCCCC-----CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHHHhhC
Confidence            455555653211     2345666666 57999887531    23589998  4568999999999998764

>PRK09265 aminotransferase AlaT; Validated

Probab=90.69  E-value=2.7  Score=29.39  Aligned_cols=67  Identities=15%  Similarity=0.062  Sum_probs=44.7

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+.+.............+...+.++||++.++..    ..+.+|+.=  ..+++++++++++|.+++..
T Consensus       331 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        331 ALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             ceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence            66666666431100001234566788899999987532    246788874  57899999999999998853

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=90.41  E-value=2  Score=29.27  Aligned_cols=48  Identities=13%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+.+.++|++++..+ ..+.+|++-.  .++++.+++.++|++..++
T Consensus       281 ~~~~~~~l~~~gi~v~~f~-~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        281 AAALHEFLARRGILTRLFE-QPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             HHHHHHHHHHCCeEEEECC-CCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence            4577888999999998764 4678998833  3678899999999877654

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=90.24  E-value=2.7  Score=29.28  Aligned_cols=68  Identities=10%  Similarity=0.117  Sum_probs=44.7

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      -|+++=+++....-........+++.++ ++||++.++..  ..+.+|+.  +..+++++++++++|.+.+++
T Consensus       329 ~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis--~~~~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       329 GAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV--LTVPVVMMEEACSRIQEFCER  399 (401)
T ss_pred             eeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEE--EcCCHHHHHHHHHHHHHHHhc
Confidence            4777777764310000002345677775 78999987542  25778887  445689999999999998864

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=89.93  E-value=3.4  Score=28.43  Aligned_cols=45  Identities=24%  Similarity=0.502  Sum_probs=36.5

Q ss_pred             HHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           32 LDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..+.+.+.++|+.++++...    .+.+|+.   +-++++.+++++++++.+
T Consensus       305 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        305 IDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            46888889999999986422    3578988   678899999999999876

>PRK07683 aminotransferase A; Validated

Probab=89.66  E-value=2.6  Score=29.31  Aligned_cols=48  Identities=15%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             HHHHH-HHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           33 DVMDK-MKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        33 ~v~~~-~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      .+... +.++|+.+.++..    ..+.+|+.  +..+++++.+++++|.+.+++|
T Consensus       332 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~~~~~~~~~~al~~l~~~l~~~  384 (387)
T PRK07683        332 DFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--YAYSIETLKEGLDRLEAFLQQK  384 (387)
T ss_pred             HHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence            45544 5678999987532    24688886  4458999999999999998765

>PRK06207 aspartate aminotransferase; Provisional

Probab=89.28  E-value=2.8  Score=29.45  Aligned_cols=63  Identities=14%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+++....    .....+.+.+. ++||++.++..    ..+.+|+.=.  .+++++++++++|.+++++
T Consensus       335 g~fl~~~l~~~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~  402 (405)
T PRK06207        335 GSYLFPRLPRLA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIER  402 (405)
T ss_pred             eEEEEEeCcccC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            677777764211    02456777776 68999988532    2567888854  4799999999999998853

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=89.25  E-value=1.6  Score=30.55  Aligned_cols=51  Identities=12%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHcCceeeecC--------CCCCEEEEecC----cccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPP----LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PP----L~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.+....        ...+.+|+...    ..+|++|++.+++.|++++..
T Consensus       327 ~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        327 GKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             HHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            3567788889999987321        12346787442    357899999999999998753

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=88.95  E-value=2.9  Score=29.49  Aligned_cols=53  Identities=13%  Similarity=0.101  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           28 KAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        28 ~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+.+....++++|+.+....     .....||+.-.-.-|++|||+.++++.++.+
T Consensus       354 a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  354 ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence            3577888999999999876432     2456788888888999999999999998864

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=88.80  E-value=2.6  Score=29.45  Aligned_cols=60  Identities=15%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |.++=+++...-     ....+.+.+. ++|+++.++..    ..+.+|+.  +..++++++++++++.++|
T Consensus       338 ~~f~~v~l~~~~-----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~  402 (402)
T TIGR03542       338 APYLWVKTPEGI-----SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEAL  402 (402)
T ss_pred             eeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhhC
Confidence            555555553211     2346777766 57999988531    24679998  5558999999999998864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=88.47  E-value=5.4  Score=27.59  Aligned_cols=59  Identities=17%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|+++-+++.+        ...+.+.+.++|++++++..   ..+.+|+.   +-+.++.+.++++|++...
T Consensus       301 ~~g~f~~~~~~~--------~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        301 SQGNFLLVRFDD--------AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             CCCcEEEEEcCC--------HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHHHh
Confidence            457777776631        34677888999999998632   25689988   4578999999999988654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=88.22  E-value=3.4  Score=28.35  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             HHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+.+.+.++|++++++...    ++.+|+.   +-+.++.+.++++|++.++
T Consensus       305 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        305 IDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVLT  354 (356)
T ss_pred             HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHHc
Confidence            46788888999999876422    3689988   3478999999999998775

>PRK08361 aspartate aminotransferase; Provisional

Probab=87.97  E-value=5.6  Score=27.61  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++....    -....+...+. ++|+++.++..    ..+.+|+.  +..+++++++++++|.+++++
T Consensus       323 ~~~~~~~l~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        323 AFYVFANIDETG----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--YATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             EEEEEEECCCCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence            566656664211    02345666676 58999987431    24678887  456889999999999998864

>PRK09105 putative aminotransferase; Provisional

Probab=87.96  E-value=3.3  Score=28.74  Aligned_cols=47  Identities=23%  Similarity=0.367  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..++.+.+.++|+++... +...+.+|+...   ++++++.+++++++.++
T Consensus       322 ~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        322 AKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             HHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            356888888999988422 123578999955   78999999999998763

>PRK08912 hypothetical protein; Provisional

Probab=87.91  E-value=4  Score=28.28  Aligned_cols=65  Identities=11%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+++.....  ......+++.+. ++||++.++..      ..+.+|+.=.  -+++++++++++|.+++..
T Consensus       315 ~~~l~~~l~~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        315 TYFLTVDLAPLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR  386 (387)
T ss_pred             ceEEEecccccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence            5666666643110  012345677765 57999987532      2467888744  4689999999999998865

>PLN02409 serine--glyoxylate aminotransaminase

Probab=87.86  E-value=3.2  Score=29.14  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             HHHHHHHH-HcCceeeecC-C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMK-QMGVLIGKGG-F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~-~~Gll~~~~g-~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+. ++|+.+..+. . .+.++|+..---++++++..++++|+++|.+
T Consensus       320 ~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        320 AEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             HHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45665554 6798887542 2 4789999999999999999999999999863

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=87.83  E-value=2.5  Score=30.79  Aligned_cols=46  Identities=22%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             HHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           33 DVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+...+.++||++.++..    ..+.+|++  +..+++++++++++|.+.++
T Consensus       464 ~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a~~rl~~~~~  513 (517)
T PRK13355        464 FALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDAMDRLADFFS  513 (517)
T ss_pred             HHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence            344567789999987532    25688888  46899999999999999886

>PRK14012 cysteine desulfurase; Provisional

Probab=87.75  E-value=0.99  Score=31.54  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.||+.+....|++|+|.+++.|+++++
T Consensus       350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~  378 (404)
T PRK14012        350 HSSIRFSLGRFTTEEEIDYAIELVRKSIG  378 (404)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999998764

>PLN00175 aminotransferase family protein; Provisional

Probab=87.55  E-value=2.6  Score=29.76  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=36.1

Q ss_pred             HHHHHHHHH-HcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+...++ ++||.+.++..       ..+.+||+-.  .+++++++++++|.+.++
T Consensus       357 ~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        357 DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            346777776 57999887521       2368888854  589999999999999875

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=87.53  E-value=3.1  Score=29.27  Aligned_cols=66  Identities=12%  Similarity=0.043  Sum_probs=42.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHH-HHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVM-DKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~-~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++.=+++.............++ ..+.++||++.++..  ..+.+|+.=  ..+++++++++++|.+++.
T Consensus       335 g~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~~al~rl~~~l~  403 (409)
T PLN00143        335 AFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLEDGLGRLKSFCG  403 (409)
T ss_pred             eEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHHH
Confidence            66776776421000000123344 556789999988532  356788874  4568999999999999885

>PRK08363 alanine aminotransferase; Validated

Probab=87.49  E-value=2.9  Score=29.14  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             HHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           34 VMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +...+.++|+.+.++..    ..+.+|++  +..+++++++++++|.+++.+
T Consensus       345 ~~~~l~~~gV~v~~g~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        345 VLDVLHEAHVLFVHGSGFGEYGAGHFRLV--FLPPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             HHHHHHhCCEEEeCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence            34556789999987532    13678888  345789999999999988753

>PHA02771 hypothetical protein; Provisional

Probab=87.22  E-value=0.3  Score=27.96  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +.+....++.-=+.      .=+++|.+|+++|++|..+++.
T Consensus         7 K~ii~~fF~d~~i~------El~L~F~~~l~ite~ey~ELi~   42 (90)
T PHA02771          7 KSIIDKFFQDQTII------RINLMFNKEIIVSYNQFEEIIK   42 (90)
T ss_pred             HHHHHHHhcccchH------HhhhhcCCCeEecHHHHHHHHc
Confidence            44555555543222      2358899999999999999875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=87.10  E-value=6.7  Score=27.32  Aligned_cols=59  Identities=10%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      -|.++-+++....     ....+.+.+.++|+.++++..  ..+.+|++--   +.++.+.+++++++.
T Consensus       319 ~~~f~~~~~~~~~-----~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        319 DANFILCRVTSGR-----DAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             CCeEEEEECCCCC-----CHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence            3556555553211     245688888899999988632  2468999844   788899999988763

>PRK05957 aspartate aminotransferase; Provisional

Probab=86.73  E-value=4.9  Score=27.98  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++.-+++..+-     ....+++.+. ++|+.+.++..    .++.+|+.=.. .+++++.+++++|.+.++
T Consensus       318 g~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~  384 (389)
T PRK05957        318 AFYCFLKVNTDL-----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLK  384 (389)
T ss_pred             eEEEEEeCCCCC-----ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence            566666664321     2456777776 58999988531    14578887432 479999999999988875

>TIGR02006 IscS cysteine desulfurase IscS

Probab=86.70  E-value=1.2  Score=31.10  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=26.3

Q ss_pred             CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...||+++....|++|+|.+++.|.++++
T Consensus       348 ~~~vR~S~~~~~t~edid~l~~~l~~~~~  376 (402)
T TIGR02006       348 HSSIRFTIGRFTTEEEIDYAVKLVKSAID  376 (402)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999998764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=86.49  E-value=3.7  Score=28.81  Aligned_cols=48  Identities=13%  Similarity=0.105  Sum_probs=36.3

Q ss_pred             HHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+++.++ ++|+++.++..  ..+.+|+.=  ...+++++++++++.++++
T Consensus       357 ~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~l~~al~~l~~~~~  407 (412)
T PTZ00433        357 DVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPVEVLREAVERIKAFCE  407 (412)
T ss_pred             HHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence            346778887 58999987642  246788773  4468899999999999885

>PRK07681 aspartate aminotransferase; Provisional

Probab=86.46  E-value=4.6  Score=28.18  Aligned_cols=58  Identities=16%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |+++=+++....     ...++...+++ +|+.+.++..    ..+.+|+.=.  .+++++++++++|.+
T Consensus       322 g~f~~~~l~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        322 SMFVWAEIPKGW-----TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             eeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            666666663211     24567777776 8999987531    2357888643  578999999999988

>PRK05367 glycine dehydrogenase; Provisional

Probab=86.36  E-value=3.6  Score=32.68  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..+.+++.+.|+...... ...+.+++.|--.-|++|||++++++.....
T Consensus       823 ~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~  874 (954)
T PRK05367        823 TVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRA  874 (954)
T ss_pred             CHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHH
Confidence            35678899999998765421 2367899999999999999999999876543

>PRK12566 glycine dehydrogenase; Provisional

Probab=86.33  E-value=4.1  Score=32.46  Aligned_cols=51  Identities=14%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+++.++|+..... -+..+.+++.|--.-|++|||++++++.+..++
T Consensus       825 ~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        825 EEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             HHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            456888888988754321 123789999999999999999999999877643

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=85.96  E-value=2.5  Score=28.51  Aligned_cols=47  Identities=11%  Similarity=0.198  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHcCceeeecCCC-------------------------CCEEEEecCcccCHHHHHHHHHHHH
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFY-------------------------GNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~-------------------------~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ....+.+.+.++|+.+......                         .+++++....-.|++|++.++++|+
T Consensus       281 ~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         281 SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            3567888888999966521100                         1589999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=85.74  E-value=4.4  Score=27.48  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283           30 ETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        30 ~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ....+.+.++++ |+.+.+..  ...+.+|++- =..+++++++++++|
T Consensus       316 ~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  316 DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            356788888887 99998842  1367899996 689999999999875

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=85.51  E-value=2.9  Score=28.98  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             HHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHH---HHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKE---DANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~---eid~~~~~l~~~l~   80 (82)
                      ..+...+.++||+++++..   ..+.+||+-.  ..++   |.+.++++|+++++
T Consensus       294 ~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       294 EIGLDLLRNYGIITITAVGMPGASKTLRFDLA--AKDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             HHHHHHHHhCCEEEeCCcccCCCCCeEEEEEe--cChHHhcCHHHHHHHHHhccC
Confidence            3455667789999998632   2568998733  3333   79999999998763

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK05839 hypothetical protein; Provisional

Probab=85.42  E-value=5.3  Score=27.67  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |+++=+++.+        ...+.+.+.+ +|+.+.++..      ..+.+|++=.  .+++++.+++++|.++++
T Consensus       309 g~fi~~~~~~--------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        309 TFYVWLPVDN--------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             eEEEEEeCCC--------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence            5566555531        2356777764 9999987421      1478998853  479999999999999875

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=84.86  E-value=6.4  Score=27.82  Aligned_cols=48  Identities=21%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+..++..+.++|+++...  ....+|+.--.-+|+++++.....+++.+
T Consensus       319 ~~~~l~~~~~k~gi~lm~~--~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  319 TAEELCKFLEKNGILLMGG--ASRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             CHHHHHHHHHHCCeEEeec--cccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            4667889999999998764  35568888899999999999999996554

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=84.79  E-value=3.5  Score=29.12  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             HHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           34 VMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ....++..|++....   +..+||.-...+|++++|+++..+++.+
T Consensus       299 ~~~~~~~~~~~~~~~---~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         299 LAGALFYRGVLIGAH---GEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             hhchhheeeeeccCC---CceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            344566677776542   2589999999999999999999998764

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=84.56  E-value=8.3  Score=26.38  Aligned_cols=55  Identities=9%  Similarity=0.203  Sum_probs=40.2

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ..|.+.-+.+...      ...++.+.+.++|++++.+   .+.+|++   +-+.++.+++++.|++
T Consensus       279 ~~g~f~~~~l~~~------~~~~~~~~l~~~Gi~V~~~---~~~~Ris---i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        279 SRGNFVFIFMEKE------EKERLLEHLRAKNIAVRSF---REGVRIT---IGKREENDMILKELEV  333 (335)
T ss_pred             CCCeEEEEeCCCc------cHHHHHHHHHHCCeEEEEC---CCCeEEe---cCCHHHHHHHHHHHHh
Confidence            3466665555321      2356888899999999975   4679998   6678999999998874

>PTZ00377 alanine aminotransferase; Provisional

Probab=84.42  E-value=4.3  Score=29.24  Aligned_cols=44  Identities=16%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             HHHHHHcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           35 MDKMKQMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        35 ~~~~~~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.++||.+.++...     .+.+|++=  ..+++++++++++|.+.++
T Consensus       426 ~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~--~~~~e~l~~~l~rl~~~~~  474 (481)
T PTZ00377        426 LELLESTGIVVVPGSGFGQKPGTYHFRITI--LPPEEQIEEMVKKIKEFHE  474 (481)
T ss_pred             HHHHHHcCEEEeCCcccCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHH
Confidence            45566789999876422     24799874  4778999999999998875

>PLN02187 rooty/superroot1

Probab=84.30  E-value=5.5  Score=28.72  Aligned_cols=45  Identities=11%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             HHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           34 VMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +...+.++||++.++..  ..+.+|+.=  ..+++.+++++++|.++++
T Consensus       391 ~~~ll~~~gV~v~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~~~l~  437 (462)
T PLN02187        391 CVKLAREENLVFLPGDALGLKNWMRITI--GVEAHMLEDALERLKGFCT  437 (462)
T ss_pred             HHHHHhhCCEEEECccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence            34566889999987532  357888874  4578999999999999875

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=84.23  E-value=6.2  Score=27.45  Aligned_cols=60  Identities=13%  Similarity=0.093  Sum_probs=41.3

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      -|+++-+++..       ....+...++ ++|+.+.++..          ..+.+|+.--  .+++++++++++|.+.+.
T Consensus       325 ~g~f~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        325 AGFYLWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR  395 (396)
T ss_pred             eeEEEEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence            47777777641       1245666664 68999877531          1367888744  468999999999998874

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=84.16  E-value=4.7  Score=32.26  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.+.|+..-... +..+.+++.|--.-|++|||++++++.....
T Consensus       856 ~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~  906 (993)
T PLN02414        856 PEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRE  906 (993)
T ss_pred             HHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH
Confidence            4678888889888653221 2378999999999999999999999976653

>PRK08175 aminotransferase; Validated

Probab=83.84  E-value=12  Score=26.12  Aligned_cols=66  Identities=9%  Similarity=0.079  Sum_probs=44.6

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      -|+++-+++.+....  .....+...++ ++||++.++.    ...+.+||.=  ..+++.+.++++.|.+.+.+
T Consensus       319 ~g~~i~i~l~~~~~~--~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        319 ASMYVWAKIPEPYAA--MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             EEEEEEEECCcccCC--CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence            377777877532100  01456776655 6899998752    1245799864  35899999999999998753

>PRK06107 aspartate aminotransferase; Provisional

Probab=83.55  E-value=6.5  Score=27.48  Aligned_cols=48  Identities=17%  Similarity=0.210  Sum_probs=35.3

Q ss_pred             HHHHH-HHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMD-KMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~-~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++. .+.++||++.++..  ..+.+|+.=-  .++++++++++.|.+.+++
T Consensus       350 ~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~  400 (402)
T PRK06107        350 QDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAA  400 (402)
T ss_pred             HHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence            34554 45678999988632  2467887755  4799999999999998864

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=83.55  E-value=8.1  Score=26.44  Aligned_cols=46  Identities=17%  Similarity=0.225  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|+.++++..   ..+.+|+.-   -+.++.+.+++.|++.+
T Consensus       302 ~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        302 ADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL  350 (351)
T ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence            34678888899999987531   246799883   36788899999998754

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=83.43  E-value=5.5  Score=27.34  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ..+.+.+.++|+++.++..    ..+.+|+.-.  .+++++++++++|.
T Consensus       317 ~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        317 WDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             HHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            4567788899999987431    2467888854  37999999998874

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=83.39  E-value=8.5  Score=26.57  Aligned_cols=47  Identities=15%  Similarity=0.285  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+++.++..  ..+.+|+.-.   +.++.+.+.+++++.+.
T Consensus       322 ~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        322 ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVLE  370 (371)
T ss_pred             HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            45688888899999987531  2567888855   57778888888877653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=83.24  E-value=12  Score=26.23  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      -|+++-+++.............+...+ .++|+.+.++..  ..+.+|++  +..+++.+++++++|.+.+++
T Consensus       331 ~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       331 GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRIT--ITVPESMLEEACSRIKEFCER  401 (403)
T ss_pred             ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            366766776432100000234566664 578999987532  35678888  445789999999999998865

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK06348 aspartate aminotransferase; Provisional

Probab=83.08  E-value=9.5  Score=26.45  Aligned_cols=60  Identities=12%  Similarity=0.081  Sum_probs=39.9

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      |++.=+++....    .....+.+.|. ++|+.+.++..    ..+.+|++-  ..+++++++++++|.+.
T Consensus       318 g~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        318 SIYAFINIKKTG----LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             eEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            555555553211    02446777776 57999987532    246899985  46899999999998753

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=82.55  E-value=5.4  Score=31.75  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      +.++.+.+.++|++++..  .++.+.++.--+-|++||+.+++++.
T Consensus       383 ~~~i~~~~~~~gi~l~~~--~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       383 SSELLKAAEEFNINLRAV--DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             HHHHHHHHHHCCCeeeec--CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            567899999999998764  35799999999999999999999984

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=82.46  E-value=12  Score=25.37  Aligned_cols=55  Identities=20%  Similarity=0.255  Sum_probs=35.7

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      .+.|+|.-+++.+        ..++.+.+.++|+++.+...    ..+.+|+...  -..++ +.+++++
T Consensus       271 ~~~~~f~~~~~~~--------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~l  329 (330)
T TIGR01140       271 GGTALFLLVRTPD--------AAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEAL  329 (330)
T ss_pred             CCCCeEEEEEcCC--------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHhh
Confidence            3457776666532        34688899999999988532    2368999754  23333 6666654

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK12414 putative aminotransferase; Provisional

Probab=81.33  E-value=13  Score=25.75  Aligned_cols=43  Identities=7%  Similarity=-0.035  Sum_probs=31.0

Q ss_pred             HHH-HHHHHcCceeeecCCC------CCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           33 DVM-DKMKQMGVLIGKGGFY------GNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        33 ~v~-~~~~~~Gll~~~~g~~------~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      .++ +.+.++||.+.++...      .+.+|++=.  .+++++++++++|.+
T Consensus       334 ~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        334 DFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             HHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            344 5667899999885311      357888754  479999999998864

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=81.30  E-value=5.8  Score=27.48  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=40.7

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecC---C-CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGG---F-YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g---~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      -|+++=+++...-.   .....+.+.+ .++||++.++.   . ..+.+|+.=  ..+++++++++++|.+.|
T Consensus       321 ~g~f~~~~~~~~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        321 ATMYVWAKLPEPWQ---GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAFL  388 (388)
T ss_pred             eeEEEEEECCcccC---CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHhC
Confidence            46666666643110   0134566666 56899998852   1 236788873  457999999999998753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=81.28  E-value=12  Score=26.88  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=44.5

Q ss_pred             cceEEEEEeeeCCCC-chHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQL-RKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~-~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      -|++.=+++.+.-.. ..+...++...+++ +||++.++..    ..+.+|+.=.. .+++.+++++++|.+++++
T Consensus       363 ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        363 AGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             eeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence            478888887431110 01223466766664 7999887532    25677776332 4789999999999999864

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=81.23  E-value=12  Score=25.80  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |++.-+++....     ....+.+.++ ++|+++.++..    ..+.+|+.-.  .+++++.++++++.+
T Consensus       322 ~~~~~v~~~~~~-----~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        322 TFYVWAPVPKGY-----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             ceEEEEECCCCC-----CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            565666663221     2456777776 58999988521    2468998854  578899999988764

>PHA02772 hypothetical protein; Provisional

Probab=81.18  E-value=1.4  Score=25.51  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=25.7

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ..+....++.-=+..      =.++|.+|+.+|++|..+++..
T Consensus         7 k~il~~FFed~~i~e------l~l~F~~~l~ite~e~~eLi~n   43 (95)
T PHA02772          7 KRIIDMFFKEKNLDE------LTLAFKRPLIISENEYNELVGR   43 (95)
T ss_pred             HHHHHHHhcccceee------eEEEccCceEecHHHHHHHHcC
Confidence            345555555432322      3588999999999999998763

>PRK08354 putative aminotransferase; Provisional

Probab=81.17  E-value=11  Score=25.33  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             HHHHHHHHHcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           32 LDVMDKMKQMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+.+.+.++|++++++...  ++.+||.   +-+.++.+++++++++.
T Consensus       264 ~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        264 EKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW  309 (311)
T ss_pred             HHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence            46778889999999987432  3678876   33556778888877764

>PLN02656 tyrosine transaminase

Probab=81.12  E-value=8.1  Score=27.15  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=35.1

Q ss_pred             HHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           34 VMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +...+.++||++.++..  ..+.+|+.=-  .+++++++++++|.+++.
T Consensus       356 ~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~  402 (409)
T PLN02656        356 CFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYL  402 (409)
T ss_pred             HHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence            45677889999988632  2467888755  489999999999999875

>PRK07550 hypothetical protein; Provisional

Probab=80.48  E-value=11  Score=26.05  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=35.0

Q ss_pred             HHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..++...+. ++|+.+.++..    ..+.+|+.-.. .+++++++++++|.+.
T Consensus       333 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        333 SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            456777664 68999988531    24689999853 5799999999998763

>PRK08637 hypothetical protein; Provisional

Probab=80.26  E-value=9.8  Score=26.46  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      -|+++-+++..      ....++.+.+. ++||.+...+  .+.+|+.=.. .+++++++++++|.+++.
T Consensus       325 ~g~~~~~~l~~------~~~~~l~~~l~~~~gv~~~~~~--~~~iRi~~~~-~~~~~i~~~~~~l~~~~~  385 (388)
T PRK08637        325 SGYFMCLKLKG------VDAEELRVHLLEKYGIGTIALN--ETDLRIAFSC-VEEEDIPELFDSIYKAIK  385 (388)
T ss_pred             ceEEEEecCCh------HHHHHHHHHHhhhcceEEEecc--CCceEEEeec-CCHHHHHHHHHHHHHHHH
Confidence            36666666631      12456778886 6799877542  5678887554 689999999999999885

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=80.11  E-value=7.9  Score=27.57  Aligned_cols=46  Identities=15%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             HHH-HHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           33 DVM-DKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        33 ~v~-~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .++ ..+.++||++.++..  ..+.+||.=.  .+++++++++++|.+.+.
T Consensus       375 ~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~  423 (430)
T PLN00145        375 DFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCL  423 (430)
T ss_pred             HHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence            455 455578999988532  3578998844  589999999999998875

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=80.08  E-value=9.8  Score=29.47  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .+..+.+.+.++|+....++  .+.+.|+-++-.|+++++.++++|.+.
T Consensus       510 ~g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~L~~aL~~f  556 (713)
T PRK15399        510 PAALVAKFLDERGIVVEKTG--PYNLLFLFSIGIDKTKAMGLLRGLTEF  556 (713)
T ss_pred             CHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45677888899999998875  677777777889999999999888754

>PRK13578 ornithine decarboxylase; Provisional

Probab=80.05  E-value=9.7  Score=29.52  Aligned_cols=46  Identities=11%  Similarity=0.026  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +..+.+.+.++|+....++  .+.+.|+-++-.|+++++.++++|.+.
T Consensus       517 g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~Lv~aL~~f  562 (720)
T PRK13578        517 ATILANYLRENGIVPEKCD--LNSILFLLTPAEDMAKLQQLVAMLARF  562 (720)
T ss_pred             HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5678888889999998875  677777777899999999999988754

>PRK08960 hypothetical protein; Provisional

Probab=80.02  E-value=15  Score=25.47  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      -|+++-+++.+...    ....+.+.++ ++|+.+.++..     .++.+|++-..  +.+++.++++++.+++.
T Consensus       318 g~~f~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        318 GAFYLYADISAFGG----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             eeEEEEEeccccCC----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            36777777643110    1346676665 68999987521     24689988663  78999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-08
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-08
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		6e-07
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		3e-05
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		6e-05
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		6e-05
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		6e-05
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		7e-05
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		1e-04
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		1e-04
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		1e-04
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		1e-04
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		1e-04
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		2e-04
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		2e-04
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		5e-04
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		6e-04

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           ++  IGD RG G   G+E V D Q R   +AET  ++ +  Q+G+++   G  GNV    
Sbjct: 342 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFT 401
Query: 59  PPLCFTKEDANYLVDVMD 76
           PPL  T+ D +  +D++D
Sbjct: 402 PPLTITETDIHKALDLLD 419

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           ++  IGD RG G   G+E V D Q R   +AET  ++ +  Q+G+++   G  GNV    
Sbjct: 355 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFT 414
Query: 59  PPLCFTKEDANYLVDVMD 76
           PPL  T+ D +  +D++D
Sbjct: 415 PPLTITETDIHKALDLLD 432

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 6   IGDARGWGFMLGVEFVTDSQLRKA----ETLDVMDKMKQMGVLIGKGGF----YGNVFRI 57
           +GD RG G ++G+E V D + ++     +   V++  K+ G++IG+ G     Y N+  +
Sbjct: 368 VGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTL 427
Query: 58  APPLCFTKEDANYLVDVM 75
           APPL  + E+  +++  +
Sbjct: 428 APPLVISSEEIAFVIGTL 445

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
           +++  IGD RG G +LGVE V D + ++         T + M+    M ++   G   G 
Sbjct: 344 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 401
Query: 54  VFRIAPPLCFTKED 67
           VFRIAPPL  ++++
Sbjct: 402 VFRIAPPLTVSEDE 415

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
           +++  IGD RG G +LGVE V D + ++         T + M+    M ++   G   G 
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 403
Query: 54  VFRIAPPLCFTKED 67
           VFRIAPPL  ++++
Sbjct: 404 VFRIAPPLTVSEDE 417

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
           +++  IGD RG G +LGVE V D + ++         T + M+    M ++   G   G 
Sbjct: 345 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 402
Query: 54  VFRIAPPLCFTKED 67
           VFRIAPPL  ++++
Sbjct: 403 VFRIAPPLTVSEDE 416

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
           +++  IGD RG G +LGVE V D + ++         T + M+    M ++   G   G 
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 403
Query: 54  VFRIAPPLCFTKED 67
           VFRIAPPL  ++++
Sbjct: 404 VFRIAPPLTVSEDE 417

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 6   IGDARGWGFMLGVEFVT------DSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
           +GD RG G ML +E V       +++L KA    V     + GV+I   G YGNV R+ P
Sbjct: 377 VGDIRGRGAMLAIELVQPGSKEPNAELTKA----VAAACLKEGVIILTCGTYGNVIRLLP 432
Query: 60  PLCFTKE 66
           PL  + E
Sbjct: 433 PLVISDE 439

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K +   T +++ + +  G+++   G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58  APPLCFTKEDA 68
             PL  T EDA
Sbjct: 400 LVPL--TIEDA 408

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K +   T +++ + +  G+++   G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58  APPLCFTKEDA 68
             PL  T EDA
Sbjct: 400 LVPL--TIEDA 408

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K +   T +++ + +  G+++   G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58  APPLCFTKEDA 68
             PL  T EDA
Sbjct: 400 LVPL--TIEDA 408

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K +   T +++ + +  G+++   G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58  APPLCFTKEDA 68
             PL  T EDA
Sbjct: 400 LVPL--TIEDA 408

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6   IGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
           IG+ RG G ML +E V    L    A T  +  +    GVLI   G +GNV R+ PPL
Sbjct: 371 IGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPL 428

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 6   IGDARGWGFMLGVEFVT------DSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
           IGD RG G M+ +E V       D+ L KA    +       GV++   G YGNV R  P
Sbjct: 373 IGDVRGRGAMIAMELVKAGTTEPDADLTKA----LCAGAHAAGVIVLSCGTYGNVVRFLP 428
Query: 60  PLCFTKEDANYLVDVMD 76
           PL    +  N  +DV++
Sbjct: 429 PLSIGDDLLNEGLDVLE 445

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 6   IGDARGWGFMLGVEFVTD--SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
           +GD RG G M+ +E V    ++   A T  +       GV++   G +GNV R+ PPL  
Sbjct: 390 LGDVRGRGAMIAMELVKSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTI 449
Query: 64  TKEDANYLVDVM 75
           + E  +  +D++
Sbjct: 450 SDELLSEGLDIL 461

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	1e-25
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	8e-25
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-19
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-19
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	6e-19
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	5e-15
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-14
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	6e-14
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	3e-13
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	2e-12
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	3e-12
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	8e-12
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	1e-11
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	2e-11
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	4e-11
1z7d_A	433	Ornithine aminotransferase; structural genomics co	9e-11
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	9e-11
3hmu_A	472	Aminotransferase, class III; structural genomics,	3e-10
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	3e-10
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	7e-10
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-09
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	2e-09
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	6e-09
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	8e-09
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	4e-06
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-04

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
            ++  IGD RG G   G+E V D Q R+   AET  ++ +  Q+G+++   G  GNV   
Sbjct: 341 KRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEF 400

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PPL  T+ D +  +D++D + ++
Sbjct: 401 TPPLTITETDIHKALDLLDRAFSE 424

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 94.2 bits (235), Expect = 8e-25
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIG--KGGFYGNVF 55
           +++  IGD RG G +LGVE V D + +         +  +   +G+ +   +    G VF
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 405

Query: 56  RIAPPLCFTKEDANYLVDVMDCSMTK 81
           RIAPPL  ++++ +  + ++  ++ +
Sbjct: 406 RIAPPLTVSEDEIDLGLSLLGQAIER 431

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 79.9 bits (198), Expect = 1e-19
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K     T +++ + +  G+++   G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399

Query: 58  APPLCFTKEDANYLVDVMD 76
             PL          ++++ 
Sbjct: 400 LVPLTIEDAQIRQGLEIIS 418

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 79.9 bits (198), Expect = 1e-19
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
            +   IGD RG G M+ +E V           T  +       GV++   G YGNV R  
Sbjct: 368 AEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFL 427

Query: 59  PPLCFTKEDANYLVDVMD 76
           PPL    +  N  +DV++
Sbjct: 428 PPLSIGDDLLNEGLDVLE 445

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 78.0 bits (193), Expect = 6e-19
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
           ++   IG+ RG G ML +E V    L    A T  +  +    GVLI   G +GNV R+ 
Sbjct: 366 EEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLL 425

Query: 59  PPLCFTKEDANYLVDVMD 76
           PPL    +  +  +  + 
Sbjct: 426 PPLVIGDDLLDEGITALS 443

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score = 66.9 bits (164), Expect = 5e-15
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 1   DKY-GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
            +Y   I   RG G     +   D  +R      ++   +  GV++G  G      R  P
Sbjct: 396 ARYPQFISRVRGRGTFCSFDTP-DESIRNK----LISIARNKGVMLGGCG--DKSIRFRP 448

Query: 60  PLCFTKEDANYLVDVMD 76
            L F    A+  +++  
Sbjct: 449 TLVFRDHHAHLFLNIFS 465

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRK----AETLDVMDKMKQMGVLIGKGG----FYGNVFRI 57
           +GD RG G ++G+E V D + ++     +   V++  K+ G++IG+ G     Y N+  +
Sbjct: 368 VGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTL 427

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
           APPL  + E+  +++  +  +M +
Sbjct: 428 APPLVISSEEIAFVIGTLKTAMER 451

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 63.8 bits (156), Expect = 6e-14
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 1   DKY-GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
             +   + D RG G M        +  R     +++ ++ Q  V++   G   +  R  P
Sbjct: 373 ADFPAVVLDPRGRGLMCAFSLP-TTADRD----ELIRQLWQRAVIVLPAG--ADTVRFRP 425

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
           PL  +  + +  +  +  ++  
Sbjct: 426 PLTVSTAEIDAAIAAVRSALPV 447

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 61.8 bits (151), Expect = 3e-13
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
             D RG G   G+E+             ++ +  + G+L+   G   +  R+ PPL  ++
Sbjct: 349 ADDVRGIGLAWGLEYNEK-----KVRDRIIGESFKRGLLLLPAG--RSAIRVIPPLVISE 401

Query: 66  EDANYLVDVMD 76
           E+A   +D++ 
Sbjct: 402 EEAKQGLDILK 412

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
           +++    D RG G ++G E     + R     D +    + GV++   G   +V R AP 
Sbjct: 342 EQFDIFSDIRGMGLLIGAELKPKYKGRAR---DFLYAGAEAGVMVLNAG--ADVMRFAPS 396

Query: 61  LCFTKEDANYLVDVMDCSMTK 81
           L   + D +  +     ++ K
Sbjct: 397 LVVEEADIHEGMQRFAQAVGK 417

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 58.7 bits (143), Expect = 3e-12
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           + D R +G    ++             +    + + G  +    F G+  +  P      
Sbjct: 374 VIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYV---RFGGDTLQFGPTFNSKP 430

Query: 66  EDANYLVDVMDCSMTK 81
           +D + L D +   + K
Sbjct: 431 QDLDRLFDAVGEVLNK 446

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 57.5 bits (140), Expect = 8e-12
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
           ++Y  + D RG G M+G++F  +   R     +V  K  +  +L+   G   N  R  PP
Sbjct: 323 EEYDVVADVRGMGLMIGIQFREEVSNR-----EVATKCFENKLLVVPAG--NNTIRFLPP 375

Query: 61  LCFTKEDANYLVDVMD 76
           L     + +  V+ + 
Sbjct: 376 LTVEYGEIDLAVETLK 391

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
           +++      +G GFM G+      ++       V+ K ++  +L+   G   N  R  PP
Sbjct: 321 NEFDFCKKRKGLGFMQGLSLDKSVKVA-----KVIQKCQENALLLISCG--ENDLRFLPP 373

Query: 61  LCFTKEDANYLVDVMD 76
           L   KE  + + + + 
Sbjct: 374 LILQKEHIDEMSEKLR 389

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
           +G+ RG G +  VEFV D   R            V   +   GV+  +    G++   AP
Sbjct: 375 VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIG-RAMPQGDILGFAP 433

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
           PLC T+E A+ +V     ++  
Sbjct: 434 PLCLTREQADIVVSKTADAVKS 455

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 56.1 bits (136), Expect = 4e-11
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD--------VMDKMKQMGVLIGKGGFYGNVFRI 57
           IG+ RG GFM  +E V D   +     D        + +    +G++       G    +
Sbjct: 383 IGEYRGIGFMWALEAVKDKASK--TPFDGNLSVSERIANTCTDLGLICRP---LGQSVVL 437

Query: 58  APPLCFTKEDANYLVDVMDCSMTK 81
            PP   T+   + + D ++ ++ K
Sbjct: 438 CPPFILTEAQMDEMFDKLEKALDK 461

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 54.9 bits (133), Expect = 9e-11
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
                + D RG G +  +EF  +        LD+  K+K+ G++           R+ PP
Sbjct: 354 KDSKIVRDVRGKGLLCAIEFKNE----LVNVLDICLKLKENGLITRDVH--DKTIRLTPP 407

Query: 61  LCFTKEDANYLVDVMD 76
           LC TKE  +   +++ 
Sbjct: 408 LCITKEQLDECTEIIV 423

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 54.9 bits (133), Expect = 9e-11
 Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
           + + R  G +  V+ + D         D      + ++  ++G+++      G++  I+P
Sbjct: 375 VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIV---RPLGDLCVISP 431

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
           PL  ++   + +V +M  ++T+
Sbjct: 432 PLIISRAQIDEMVAIMRQAITE 453

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD-------VMDKMKQMGVLIGKGGFYGNVFRIA 58
           +G+A+  G M  +    +   R     +         ++     +++      G+   I+
Sbjct: 372 VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIM---RHVGDRMIIS 428

Query: 59  PPLCFTKEDANYLVDVMDCSMTK 81
           PPL  T  + + +   +  S+ +
Sbjct: 429 PPLVITPAEIDEMFVRIRKSLDE 451

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
               +   RG G +  +  + +++   A    V  +++  G+L       G++ R APPL
Sbjct: 364 PSDVVTAVRGKGLLNAIV-IKETKDWDAW--KVCLRLRDNGLLAKPTH--GDIIRFAPPL 418

Query: 62  CFTKEDANYLVDVMD 76
              +++    +++++
Sbjct: 419 VIKEDELRESIEIIN 433

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 52.2 bits (126), Expect = 7e-10
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
           + D RG G +     V +   R+             D   +  +++      G+    AP
Sbjct: 370 VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIM---RACGDHIVSAP 426

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
           PL  T+ + + ++ V +  + +
Sbjct: 427 PLVMTRAEVDEMLAVAERCLEE 448

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G  +G+E    ++          +++K  G+L  +     NV RIAPPL  ++
Sbjct: 327 ITEVRGKGLFIGIELNEPAR-------PYCEQLKAAGLLCKETH--ENVIRIAPPLVISE 377

Query: 66  EDANYLVDVMD 76
           ED  +    + 
Sbjct: 378 EDLEWAFQKIK 388

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 8   DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKED 67
             +G G MLG+E   + +       D + K  + G+LI      G V R  PPL   KE 
Sbjct: 313 KVKGRGLMLGLELERECK-------DYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEH 363

Query: 68  ANYLVDVMD 76
            +  + V+ 
Sbjct: 364 IDRAISVLR 372

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G M+G+E      L++     +    K+  VL  + G    V R  PPL   K
Sbjct: 329 IREVRGMGLMVGLE------LKEKAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEK 380

Query: 66  EDANYLVDVMD 76
           ED   +V+ + 
Sbjct: 381 EDLERVVEAVR 391

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 49.5 bits (119), Expect = 8e-09
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRK-----AETLDVMDKMKQMGVLI-----GKGGFYGNVF 55
           +   RG G +LGV  + D    +          +     + G++       +    G+  
Sbjct: 343 MMQVRGTGLLLGVV-LGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL 401

Query: 56  RIAPPLCFTKEDANYLVDVMDCSMT 80
            + PPL  T  + + L+ ++  ++ 
Sbjct: 402 LLGPPLSITAAEVDGLLALLAGALE 426

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
           +GD R  GFM G E V   + ++    D      V  KM+++G+L       G+V    P
Sbjct: 364 VGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLP 420

Query: 60  PLCFTKEDANYLVDVM 75
           PL  T E+ + +V +M
Sbjct: 421 PLASTAEELSEMVAIM 436

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAET---LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
           +      G +  +E   D+      +     ++  +++ G+        GNV  +    C
Sbjct: 752 VQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR---PLGNVIYLMCGPC 808

Query: 63  FTKEDANYLVDVM 75
            + E    L+  +
Sbjct: 809 TSPEICRRLLTKL 821

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.85
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.79
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.52
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.45
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.44
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.38
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.38
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.37
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.36
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.33
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.33
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.22
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.22
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.17
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.15
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.14
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.12
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.11
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.11
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.1
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.08
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.03
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	98.98
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.83
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	98.81
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.79
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	98.77
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.73
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.12
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	98.66
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	98.63
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	98.62
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	98.58
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	98.56
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.5
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.43
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.33
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.21
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.18
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	98.17
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	98.14
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	97.98
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.94
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	97.86
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	97.85
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	97.84
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.84
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	97.81
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	97.8
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	97.77
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.76
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	97.75
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	97.73
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	97.72
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	97.71
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.71
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	97.66
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	97.63
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.61
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	97.61
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.6
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	97.59
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	97.55
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.53
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	97.53
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.53
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	97.5
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	97.48
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.47
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.45
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	97.45
1vp4_A	425	Aminotransferase, putative; structural genomics, j	97.45
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	97.43
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	97.43
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	97.42
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	97.41
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	97.4
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	97.38
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	97.38
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	97.38
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	97.37
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.37
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	97.35
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	97.34
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	97.32
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	97.32
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	97.31
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	97.28
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	97.28
3nra_A	407	Aspartate aminotransferase; structural genomics, j	97.26
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	97.25
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	97.25
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	97.25
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	97.23
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	97.2
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	97.2
1svv_A	359	Threonine aldolase; structural genomics, structura	97.18
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	97.15
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.14
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.14
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	97.12
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.11
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.11
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.1
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.1
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	97.09
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	97.09
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.09
3ele_A	398	Amino transferase; RER070207001803, structural gen	97.09
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	97.08
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.07
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	97.01
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	97.01
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	97.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.0
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	96.99
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	96.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	96.95
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	96.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	96.95
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	96.94
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	96.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	96.92
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	96.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	96.9
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	96.9
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.83
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	96.79
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	96.74
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	96.72
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	96.71
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	96.69
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	96.6
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	96.59
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	96.57
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	96.57
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	96.53
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	96.51
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	96.5
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.48
3rq1_A	418	Aminotransferase class I and II; structural genomi	96.45
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	96.45
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.4
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	95.39
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	96.27
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	96.26
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	96.22
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	96.21
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	96.05
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	96.04
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	96.03
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	96.02
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	95.99
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	95.94
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	95.93
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	95.93
2fnu_A	375	Aminotransferase; protein-product complex, structu	95.88
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	95.81
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	95.78
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	95.7
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	95.67
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	95.54
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	95.54
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	95.54
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	95.5
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	95.49
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	95.47
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	95.35
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	95.25
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	95.16
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	94.94
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	94.93
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	94.85
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	94.73
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	94.73
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	94.72
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	94.7
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	94.67
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	94.62
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	94.61
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	94.43
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	94.24
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	94.23
3pj0_A	359	LMO0305 protein; structural genomics, joint center	94.23
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	93.74
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	93.63
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	93.6
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	93.55
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	93.47
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	93.44
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	93.32
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	92.95
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	92.95
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	92.93
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	92.91
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	92.87
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	92.74
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	92.71
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	92.23
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	92.05
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	91.36
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	91.34
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	91.31
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	91.3
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	91.0
1o69_A	394	Aminotransferase; structural genomics, unknown fun	90.67
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	90.12
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	90.09
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	89.38
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	89.04
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	88.96
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	88.8
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	86.36
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	86.2
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	83.85
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	83.59
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	83.05
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	82.99
2fqm_A	75	Phosphoprotein, P protein; negative strand RNA vir	80.76

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.85  E-value=4e-21  Score=134.82  Aligned_cols=79  Identities=32%  Similarity=0.453  Sum_probs=69.7

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc--hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~--~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ||.|++|||+|||+||||+++....  .+.+.++.+.|+++|+++.++|..+|+|||+|||+||++|+|+++++|+++|+
T Consensus       374 ~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~  453 (456)
T 4atq_A          374 GSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIK  453 (456)
T ss_dssp             --CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            5789999999999999998754322  56788899999999999999988899999999999999999999999999997


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       454 a  454 (456)
T 4atq_A          454 A  454 (456)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.79  E-value=2.7e-19  Score=126.07  Aligned_cols=77  Identities=22%  Similarity=0.436  Sum_probs=67.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.|++|||+|||+|||++.+..+.      ...+.++.+.|+++||++++.   +|+|+|+|||+||++|+|++++++
T Consensus       385 ~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g~~i~l~PPL~it~~eid~~~~~l  461 (473)
T 4e3q_A          385 ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL---GQSVVLCPPFILTEAQMDEMFDKL  461 (473)
T ss_dssp             TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE---TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHH
Confidence            56889999999999999998765543      245778999999999999986   589999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      +++|++
T Consensus       462 ~~al~~  467 (473)
T 4e3q_A          462 EKALDK  467 (473)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.52  E-value=3.2e-14  Score=105.64  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ++|.|.+|||.|+|+++|++.+....   ...+..+.+.|+++||++++.   +++|||+||+++|++|||+++++|+++
T Consensus       748 ~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t~e~id~~~~~l~~~  824 (831)
T 4a0g_A          748 SHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTSPEICRRLLTKLYKR  824 (831)
T ss_dssp             HSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             hCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999998653211   235678899999999999986   599999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       825 l~~  827 (831)
T 4a0g_A          825 LGE  827 (831)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            864

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.45  E-value=2.9e-13  Score=94.56  Aligned_cols=76  Identities=22%  Similarity=0.411  Sum_probs=63.5

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.++++||.|+|+++++.++..+.      ...+..+.+.|+++|++++++   ++++||+|||++|++|+++++++|
T Consensus       371 ~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---g~~iRi~p~l~~t~e~i~~~l~~l  447 (476)
T 3i5t_A          371 DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL---GDLCVISPPLIISRAQIDEMVAIM  447 (476)
T ss_dssp             TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE---TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999997653221      114667889999999999986   389999999999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++++
T Consensus       448 ~~~l~  452 (476)
T 3i5t_A          448 RQAIT  452 (476)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.44  E-value=2.9e-13  Score=94.54  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc-------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR-------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~-------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++|.+.++||.|+|+++++..+..+.       ...+..+.+.|+++|+++++++   ++|||+|||++|++|+++++++
T Consensus       368 ~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~~~l~~  444 (472)
T 3hmu_A          368 DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG---DRMIISPPLVITPAEIDEMFVR  444 (472)
T ss_dssp             GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET---TEEEECCCTTCCHHHHHHHHHH
T ss_pred             cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC---CEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999997542211       1346778899999999999874   9999999999999999999999


Q ss_pred             HHHhHh
Q 042283           75 MDCSMT   80 (82)
Q Consensus        75 l~~~l~   80 (82)
                      |+++++
T Consensus       445 l~~~l~  450 (472)
T 3hmu_A          445 IRKSLD  450 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.38  E-value=2.1e-12  Score=89.35  Aligned_cols=76  Identities=18%  Similarity=0.351  Sum_probs=64.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.+.++|+.|+|+++++..+..+.      ...+..+.+.|+++|+++++++   +++||+||+++|++|+++++++|
T Consensus       366 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i~~~l~~l  442 (459)
T 4a6r_A          366 RFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG---DHIVSAPPLVMTRAEVDEMLAVA  442 (459)
T ss_dssp             TCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC---CEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999997543221      2346778899999999999874   89999999999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++++
T Consensus       443 ~~~l~  447 (459)
T 4a6r_A          443 ERCLE  447 (459)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.38  E-value=2.4e-12  Score=89.09  Aligned_cols=79  Identities=29%  Similarity=0.482  Sum_probs=66.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.+.++|+.|+|+++++..+..+.      ...+..+.+.|+++|+++++++ .++++||+||+++|++|+++++++|
T Consensus       371 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~e~i~~~l~~l  449 (460)
T 3gju_A          371 GHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP-QGDILGFAPPLCLTREQADIVVSKT  449 (460)
T ss_dssp             TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS-SSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999997543221      1246678999999999999875 4599999999999999999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      ++++++
T Consensus       450 ~~~l~~  455 (460)
T 3gju_A          450 ADAVKS  455 (460)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.37  E-value=3.7e-12  Score=88.15  Aligned_cols=80  Identities=30%  Similarity=0.441  Sum_probs=67.4

Q ss_pred             CCCceeeecccceEEEEEeeeCCC--CchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQ--LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~--~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++|.+.++||.|+|+++++.+...  .....+..+.+.|+++|+++.+++..++.+||+||+++|++|+++++++|++++
T Consensus       369 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  448 (451)
T 3oks_A          369 EDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL  448 (451)
T ss_dssp             HCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            367789999999999999975211  113456788999999999999987667999999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       449 ~~  450 (451)
T 3oks_A          449 RG  450 (451)
T ss_dssp             HC
T ss_pred             hh
Confidence            64

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.36  E-value=3.8e-12  Score=88.19  Aligned_cols=80  Identities=29%  Similarity=0.425  Sum_probs=67.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCC--CchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQ--LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~--~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ++|.+.++||.|+|+++++.+...  .....+..+.+.|+++|+++.+++..++.+||+||+++|++|+++++++|++++
T Consensus       367 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  446 (453)
T 4ffc_A          367 EVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII  446 (453)
T ss_dssp             HCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            367789999999999999975211  113456788999999999999987667999999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       447 ~~  448 (453)
T 4ffc_A          447 RA  448 (453)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.33  E-value=3.2e-12  Score=88.90  Aligned_cols=72  Identities=15%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++|.+.++|+.|+|+++++..+.     .+..+.+.|+++|+++++.   ++.+||+||+++|++|+++++++|++++++
T Consensus       381 ~~~~v~~vr~~G~~~~i~l~~~~-----~~~~~~~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          381 ALPAVTDVRVCGAIGVIECDRPV-----DLAVATPAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             GSTTEEEEEECSSCEEEEESSCC-----CHHHHHHHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeeeecCCeEEEEEECCcc-----cHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            36778999999999999996532     2567889999999999986   589999999999999999999999999864

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.33  E-value=1.2e-11  Score=85.17  Aligned_cols=80  Identities=29%  Similarity=0.711  Sum_probs=66.6

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      ++|.+.++|+.|+|+++++..+..+.    ...+..+.+.++++|+++.+++.    .++.|||.||+++|++|++++++
T Consensus       364 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~  443 (452)
T 3n5m_A          364 EHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIG  443 (452)
T ss_dssp             TCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            56788999999999999997543322    23456788999999999998752    26899999999999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      +|++++++
T Consensus       444 ~l~~~l~~  451 (452)
T 3n5m_A          444 TLKTAMER  451 (452)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999875

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.22  E-value=3.4e-11  Score=82.97  Aligned_cols=76  Identities=30%  Similarity=0.498  Sum_probs=63.7

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc----h--HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR----K--AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~--~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      ++|.+.++|+.|+|+++++.++..+.    .  ..+..+.+.|+++|+++.+.   ++.+||+||+++|++|+++++++|
T Consensus       360 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~iRi~~~~~~t~e~i~~~l~~l  436 (448)
T 3dod_A          360 ALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---GDVIAFLPPLASTAEELSEMVAIM  436 (448)
T ss_dssp             TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE---TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            56788999999999999997543221    1  12567889999999999886   489999999999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++++
T Consensus       437 ~~~l~  441 (448)
T 3dod_A          437 KQAIH  441 (448)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.22  E-value=2.3e-11  Score=85.47  Aligned_cols=74  Identities=14%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +|+.+.+|||.|+|++++|++++...        ......+...|+++||++.+.+      ++.|++.+|++|||++++
T Consensus       364 ~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~------~~~~s~~~T~~dId~~l~  437 (454)
T 4ao9_A          364 NEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG------FVVLSLPLTDADIDRYVA  437 (454)
T ss_dssp             HHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC------EEECCTTCCHHHHHHHHH
T ss_pred             hCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC------CEEEeCCCCHHHHHHHHH
Confidence            46788999999999999997643221        2345678888999999998752      245777899999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      +++++|.+
T Consensus       438 al~~~l~~  445 (454)
T 4ao9_A          438 AIGSFIGG  445 (454)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.17  E-value=2.2e-10  Score=78.33  Aligned_cols=79  Identities=35%  Similarity=0.600  Sum_probs=66.4

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +|.+..+++.|+|+++++.++....   ...+..+.+.++++|+++.+++..++.+||+||++.|++|+++++++|++++
T Consensus       343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  422 (439)
T 3dxv_A          343 HPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAF  422 (439)
T ss_dssp             CTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5678899999999999997543221   3356778899999999999987666999999999999999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       423 ~~  424 (439)
T 3dxv_A          423 SE  424 (439)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.15  E-value=1.3e-10  Score=79.97  Aligned_cols=73  Identities=26%  Similarity=0.510  Sum_probs=61.8

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++|.+.++|+.|+|+++++..+.    ..+..+.+.|+++|+++.+++  .+.+|++||+++|++|+++++++|+++++
T Consensus       355 ~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~~l~~~Gv~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  427 (433)
T 1z7d_A          355 DSKIVRDVRGKGLLCAIEFKNEL----VNVLDICLKLKENGLITRDVH--DKTIRLTPPLCITKEQLDECTEIIVKTVK  427 (433)
T ss_dssp             TCTTEEEEEEETTEEEEEECTTT----CCHHHHHHHHHHTTEECCEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEeeeeEEEEEEccCh----hHHHHHHHHHHHCCeEEecCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence            46777889999999999996431    125578889999999999863  68999999999999999999999999875

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.14  E-value=2.2e-10  Score=79.08  Aligned_cols=74  Identities=16%  Similarity=0.390  Sum_probs=61.9

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++.+.++|+.|+|+++++..+..   ..+..+.+.++++|+++.+.+  ++++||+||+++|++|+++++++|++++++
T Consensus       365 ~~~~~~~~~~g~~~~v~l~~~~~---~~~~~l~~~l~~~Gv~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          365 SDVVTAVRGKGLLNAIVIKETKD---WDAWKVCLRLRDNGLLAKPTH--GDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             TTTEEEEEEETTEEEEEECCCSS---CCHHHHHHHHHHTTEECCBSS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEeeeeEEEEEEecCcc---HHHHHHHHHHHHCCeEEecCC--CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            46677899999999999964310   124578889999999998863  689999999999999999999999999864

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.12  E-value=3.1e-10  Score=76.49  Aligned_cols=72  Identities=22%  Similarity=0.427  Sum_probs=62.7

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+.++++.|+|+++++....     .+..+.+.+.++|+++++++  .+.+||+||++.|++|+++++++|++++++
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          323 FDFCKKRKGLGFMQGLSLDKSV-----KVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             CTTEEEEEEETTEEEEEECTTS-----CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEeEEEEEEEEeCCcc-----hHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            5678899999999999996532     35678888999999999875  789999999999999999999999999864

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.11  E-value=1.8e-10  Score=78.62  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc-----hHHHHHHHHHHHHcCceeeec-----CCCCCEEEEecCcccCHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR-----KAETLDVMDKMKQMGVLIGKG-----GFYGNVFRIAPPLCFTKEDANYL   71 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~-----~~~~~~v~~~~~~~Gll~~~~-----g~~~~~i~~~PPL~i~~~eid~~   71 (82)
                      ++|.+..+++.|+|+++++.+. .+.     ...+..+.+.|+++|++++++     +..++.+||+||++.|++|++++
T Consensus       339 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~  417 (430)
T 3i4j_A          339 RFPQMMQVRGTGLLLGVVLGDL-ATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGL  417 (430)
T ss_dssp             HCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHH
T ss_pred             hCCCeEEEEEEEEEEEEEeccc-cccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHH
Confidence            3577889999999999999632 111     112467889999999999986     22478999999999999999999


Q ss_pred             HHHHHHhHhc
Q 042283           72 VDVMDCSMTK   81 (82)
Q Consensus        72 ~~~l~~~l~~   81 (82)
                      +++|++++++
T Consensus       418 l~~l~~~l~~  427 (430)
T 3i4j_A          418 LALLAGALED  427 (430)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.11  E-value=1.4e-10  Score=80.95  Aligned_cols=72  Identities=19%  Similarity=0.414  Sum_probs=61.4

Q ss_pred             CC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +| .+.++|+.|+|+++++...     .....+.+.|+++|+++.+++  .++|||+||+++|++||++++++|++++++
T Consensus       398 ~~~~v~~~~~~g~~~~~~~~~~-----~~~~~~~~~l~~~Gv~~~~~g--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          398 YPQFISRVRGRGTFCSFDTPDE-----SIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             CTTTCEEEEEETTEEEEECSSH-----HHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEeecCCceEEEEEeCCh-----hHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            56 4788999999999988531     245678899999999999864  589999999999999999999999999864

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.10  E-value=2e-10  Score=79.44  Aligned_cols=72  Identities=19%  Similarity=0.415  Sum_probs=61.3

Q ss_pred             CCc-eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGT-IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~-v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|. +..+|+.|+|+++++...     .....+.+.|+++|+++.+++  .+++||+||+++|++|+++++++|++++++
T Consensus       375 ~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          375 FPAVVLDPRGRGLMCAFSLPTT-----ADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             STTTSEEEEEETTEEEEECSSH-----HHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeeEeeccEEEEEEECCh-----HHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            565 788999999999988531     235678889999999999875  689999999999999999999999998863

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.08  E-value=3.8e-10  Score=77.28  Aligned_cols=74  Identities=23%  Similarity=0.436  Sum_probs=61.4

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+.++|+.|+|+++++..+..   .....+.+.++++|+++.+++  .+.+||+||+++|++|+++++++|++++++
T Consensus       344 ~~~~~~~~~~g~~~~v~~~~~~~---~~~~~l~~~l~~~Gi~v~~~~--~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          344 FDIFSDIRGMGLLIGAELKPKYK---GRARDFLYAGAEAGVMVLNAG--ADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             HCCEEEEEEETTEEEEEECGGGT---TCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecceEEEEEECCCch---HHHHHHHHHHHHCCCEEEeCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            46677899999999999964210   125578889999999999874  689999999999999999999999998753

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.03  E-value=1.3e-09  Score=74.25  Aligned_cols=79  Identities=28%  Similarity=0.577  Sum_probs=63.6

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCC--CEEEEecCcccCHHHHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYG--NVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~--~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      +|.+..+++.|+|+++++..+..+.   ......+.+.++++|+++.+++..+  +.+||+||++.|++|+++++++|++
T Consensus       348 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~  427 (433)
T 1zod_A          348 FDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ  427 (433)
T ss_dssp             CTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence            5667889999999999997532110   1235678888999999998875444  8999999999999999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      ++++
T Consensus       428 ~l~~  431 (433)
T 1zod_A          428 AIER  431 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8853

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=98.98  E-value=2.6e-09  Score=73.28  Aligned_cols=76  Identities=14%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+.++|+.|+|+.+++..+..........+.+.++++||+++++   ++.+||+||+++|++|+++++++|++++++
T Consensus       371 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---g~~iRis~~~~~t~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          371 AKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG---GDTLQFGPTFNSKPQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             STTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC---CCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            5667788999999999996532111001235888889999999986   389999999999999999999999998863

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=98.83  E-value=1.2e-08  Score=69.49  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +|.+..+++.|+|+.+++....     ....+.+.+.++|++++++   ++.+||+||++.|++|+++++++|++++++
T Consensus       353 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~l~~~l~~~Gi~v~~~---~~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          353 AEMVADVRVLGAIGVVETTHPV-----NMAALQKFFVEQGVWIRPF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CTTEEEEEEETTEEEEEESSCB-----CHHHHHHHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEEEeeEEEEEEECCcc-----cHHHHHHHHHHCCCEEecc---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            4667778999999999985321     2456788888999999875   489999999999999999999999998753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=98.81  E-value=7.3e-09  Score=70.68  Aligned_cols=69  Identities=25%  Similarity=0.490  Sum_probs=57.5

Q ss_pred             eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         6 v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+++.|+|+.+++..+    ...+. +.+.++++|+++++++  .+.+||+||++.|++|+++++++|++++++
T Consensus       349 ~~~~~~~g~~~~i~~~~~----~~~~~-~~~~l~~~Gv~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          349 ADDVRGIGLAWGLEYNEK----KVRDR-IIGESFKRGLLLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             SSEEEEETTEEEEECSCH----HHHHH-HHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhheEeeeEEEEEEEecC----ccHHH-HHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            457899999999998421    11345 8888999999999875  689999999999999999999999998853

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.79  E-value=4.2e-08  Score=66.40  Aligned_cols=78  Identities=24%  Similarity=0.434  Sum_probs=62.3

Q ss_pred             CCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +|.+..+++.|+|+.+++......   .......+.+.+.++|+++.+++...+.+||+|++..+++|+++++++|++++
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  421 (426)
T 1sff_A          342 HPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCF  421 (426)
T ss_dssp             CTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence            556677889999999999632110   12345678888999999999875446899999999999999999999999987


Q ss_pred             h
Q 042283           80 T   80 (82)
Q Consensus        80 ~   80 (82)
                      +
T Consensus       422 ~  422 (426)
T 1sff_A          422 D  422 (426)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=98.77  E-value=2.6e-08  Score=66.98  Aligned_cols=72  Identities=25%  Similarity=0.489  Sum_probs=60.7

Q ss_pred             CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.+.++++.|+++++++..+..   .....+.+.+.++|+++.+++  .+.+|+.|++..|++|+++++++|+++++
T Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  398 (406)
T 4adb_A          327 GLFSEVRGLGLLIGCVLNADYA---GQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTGLDRFAAACE  398 (406)
T ss_dssp             CCEEEEEEETTEEEEEECTTTT---TCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEEEEEEeCCcH---HHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4567889999999999965321   135678899999999999874  78999999999999999999999999885

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.73  E-value=5.9e-08  Score=65.33  Aligned_cols=72  Identities=25%  Similarity=0.507  Sum_probs=59.6

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++.+..+++.|.++.+++..+.     ....+.+.+.++|+++.+++  .+.+||+||+..+++|+++++++|++++++
T Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          325 YDVVADVRGMGLMIGIQFREEV-----SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             CTTEEEEEEETTEEEEEECTTS-----CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEEeEEEEEEECChH-----HHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            4555667889999999885321     25578888999999999864  689999999999999999999999998864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.12  E-value=2.3e-09  Score=75.41  Aligned_cols=74  Identities=9%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             CCCceeeecccceEEEEEeeeCCC-----C---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQ-----L---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~-----~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      +++.+.++||.|+|++++|.++..     .   ..+....+.+.|+++||++.+++. . .    ||+++|++|+|++++
T Consensus       378 ~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~-~-~----~s~~~t~edid~~l~  451 (465)
T 2yky_A          378 ENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGM-Y-A----LSLEIADAGRDAFAE  451 (465)
Confidence            356678899999999999975110     0   012356788999999999998752 2 2    999999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      ++++++++
T Consensus       452 ~l~~~l~~  459 (465)
T 2yky_A          452 ALADFIGE  459 (465)
Confidence            99998864

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=98.66  E-value=6.2e-08  Score=66.17  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             CCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++.+.++|+.|+|+++++..+..+        ....+..+.+.++++|+++++++  .+.+|+  ++++|++|+++++++
T Consensus       344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~r~--~~~~t~e~i~~~l~~  419 (429)
T 3k28_A          344 HGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ--FEGLFL--STVHSDADIEATIAA  419 (429)
T ss_dssp             TTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST--TSCBCC--CTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC--CCCEEE--ECCCCHHHHHHHHHH
Confidence            567789999999999999754321        12345678899999999999864  455665  789999999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      |++++++
T Consensus       420 l~~~l~~  426 (429)
T 3k28_A          420 AEIAMSK  426 (429)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.63  E-value=1.4e-07  Score=64.32  Aligned_cols=74  Identities=18%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             CCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++.+.++|+.|+|+++++.+....        ....+..+.+.|+++|+++++++  .+.+|+  ++++|++|+++++++
T Consensus       347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~rl--~~~~t~e~i~~~l~~  422 (434)
T 3l44_A          347 HNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK--YEAWFL--TTEHTKEDIEYTIEA  422 (434)
T ss_dssp             TTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST--TCCEEC--CTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC--CCcEEE--ecccCHHHHHHHHHH
Confidence            456778999999999999643211        12345678889999999999874  456776  689999999999999


Q ss_pred             HHHhHh
Q 042283           75 MDCSMT   80 (82)
Q Consensus        75 l~~~l~   80 (82)
                      |+++++
T Consensus       423 l~~~l~  428 (434)
T 3l44_A          423 VGRAFA  428 (434)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999885

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.62  E-value=1.3e-07  Score=63.52  Aligned_cols=68  Identities=28%  Similarity=0.536  Sum_probs=58.2

Q ss_pred             CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.+..+++.|.|+.+++..       .+..+.+.+.++|+++.+++  .+.+|++||+..|++|+++++++|+++++
T Consensus       325 ~~~~~~~~~g~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          325 PMITEVRGKGLFIGIELNE-------PARPYCEQLKAAGLLCKETH--ENVIRIAPPLVISEEDLEWAFQKIKAVLS  392 (392)
T ss_dssp             TTEEEEEEETTEEEEEESS-------CSHHHHHHHHTTTEECCCBT--TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEeeeeEEEEEEcc-------hHHHHHHHHHHCCcEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence            5577889999999999743       13467888999999999864  68999999999999999999999999874

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=98.58  E-value=2e-07  Score=63.42  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             CCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++.+..+++.|+|+++++..+...        ....+..+.+.++++|+++++++.    -++.++++.|++|+++++++
T Consensus       344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~  419 (427)
T 3fq8_A          344 TGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF----EAGFTSLAHTEEDIDATLAA  419 (427)
T ss_dssp             TTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC----CCEEeeCcCCHHHHHHHHHH
Confidence            345567899999999999653221        123456788999999999998642    26788999999999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      |++++++
T Consensus       420 l~~~l~~  426 (427)
T 3fq8_A          420 ARTVMSA  426 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999864

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=98.56  E-value=2.3e-07  Score=63.28  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             CCceeeecccceEEEEEeeeCCC-Cc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQ-LR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~-~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      ++.+.++||.|+|+++++..+.. .+        ...+..+.+.|+++|+++++++  ...  +.+++++|++|++++++
T Consensus       345 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~--~~~~~~~t~e~i~~~l~  420 (429)
T 4e77_A          345 ENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA--FEA--GFMSLAHSNEDIQKTVN  420 (429)
T ss_dssp             TTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST--TSC--EECCTTCCHHHHHHHHH
T ss_pred             CCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC--CCC--EEEeccCCHHHHHHHHH
Confidence            46677899999999999975421 11        2345678899999999999874  233  45689999999999999


Q ss_pred             HHHHhHhc
Q 042283           74 VMDCSMTK   81 (82)
Q Consensus        74 ~l~~~l~~   81 (82)
                      +|++++++
T Consensus       421 ~l~~~l~~  428 (429)
T 4e77_A          421 AARRCFAK  428 (429)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999875

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=98.50  E-value=3.3e-07  Score=62.55  Aligned_cols=73  Identities=15%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      +.+.++|+.|+|+++++..+...        .......+.+.|+++|+++.+++  ..  ++.||+++|++|+++++++|
T Consensus       349 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~--~~~~~~~~t~e~i~~~l~~l  424 (434)
T 2epj_A          349 GLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN--LE--AVFTGLPHQGEALEIAVEGL  424 (434)
T ss_dssp             TCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST--TS--CEECCTTCSHHHHHHHHHHH
T ss_pred             CCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC--CC--cEEEeccCCHHHHHHHHHHH
Confidence            44567899999999999642100        01245678899999999998864  22  35688999999999999999


Q ss_pred             HHhHh
Q 042283           76 DCSMT   80 (82)
Q Consensus        76 ~~~l~   80 (82)
                      +++++
T Consensus       425 ~~~l~  429 (434)
T 2epj_A          425 RSSLK  429 (434)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=98.43  E-value=5.4e-07  Score=61.34  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             CCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++.+.++|+.|+|+++++......        ....+..+.+.++++||++.+++.  .  ++.||+++|++|+++++++
T Consensus       344 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~--~~~~~~~~t~~~i~~~l~~  419 (424)
T 2e7u_A          344 KGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF--E--AAFLSVAHREEDVEKTLEA  419 (424)
T ss_dssp             TTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS--S--CEECCTTCCHHHHHHHHHH
T ss_pred             CCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC--C--ceEeeccCCHHHHHHHHHH
Confidence            455567899999999999642100        123456788899999999998642  2  3567899999999999999


Q ss_pred             HHHhH
Q 042283           75 MDCSM   79 (82)
Q Consensus        75 l~~~l   79 (82)
                      |+++|
T Consensus       420 l~~~l  424 (424)
T 2e7u_A          420 LRKAL  424 (424)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99874

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.33  E-value=2.2e-06  Score=57.45  Aligned_cols=67  Identities=28%  Similarity=0.547  Sum_probs=55.5

Q ss_pred             ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            5 TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         5 ~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..+++.|.|+.+++..+       ...+.+.+. ++|+++.+.+  .+.+|++|++..|++|+++++++|+++++
T Consensus       328 ~~~~~~~~g~~~~~~~~~~-------~~~l~~~l~~~~gi~v~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          328 KIREVRGMGLMVGLELKEK-------AAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             TEEEEEEETTEEEEEESSC-------SHHHHHHHHHHHCEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEEEEEEEEEcCh-------HHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            3456778899999988532       346778888 8999999863  68999999999999999999999998874

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.21  E-value=3.7e-06  Score=55.83  Aligned_cols=63  Identities=32%  Similarity=0.540  Sum_probs=52.3

Q ss_pred             eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+++.|.+..+++..+       ...+.+.+.++|+++.+++  .+.+|++||+..+++|+++++++|++++
T Consensus       313 ~~~~~g~~~~~~~~~~-------~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          313 KVKGRGLMLGLELERE-------CKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             EEEEETTEEEEECSSC-------CHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEEEEEEcCc-------HHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            4567899999988532       3467788889999998863  6899999999999999999999998864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.18  E-value=7.3e-06  Score=55.32  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +.+.|.++.+++...     ..+..+.+.+.++|+++.+..     ...+.+||+|++..|++|+++++++|+++++.
T Consensus       331 ~~~~~~~~~~~~~~~-----~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          331 IRSESQIIGLETGDE-----RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             CCCSSSEEEEEEESH-----HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCH-----HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            446788999988532     245678889999999987532     13579999999999999999999999999863

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=98.17  E-value=6e-06  Score=56.65  Aligned_cols=72  Identities=17%  Similarity=-0.002  Sum_probs=53.8

Q ss_pred             CCceeeecccceEEEEEeee-----CC------C---CchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVT-----DS------Q---LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDA   68 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~-----~~------~---~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~ei   68 (82)
                      ++.+.++++.|+|+.+++..     +.      .   ........+.+.++++||++.+.    +.  +.+|++.|++|+
T Consensus       348 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~----~~--~~l~~~~t~~~i  421 (453)
T 2cy8_A          348 KGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR----GS--VFLSAQHEREHV  421 (453)
T ss_dssp             TTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT----TE--EECCTTCCHHHH
T ss_pred             CCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC----CC--EEeeccCCHHHH
Confidence            45556789999999999964     10      0   01123567888999999999643    23  446799999999


Q ss_pred             HHHHHHHHHhHh
Q 042283           69 NYLVDVMDCSMT   80 (82)
Q Consensus        69 d~~~~~l~~~l~   80 (82)
                      ++++++|+++++
T Consensus       422 ~~~l~~l~~~l~  433 (453)
T 2cy8_A          422 EHLVTTFDRVLD  433 (453)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=98.14  E-value=7.2e-06  Score=56.41  Aligned_cols=64  Identities=23%  Similarity=0.393  Sum_probs=52.5

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+++|.++.+++..+       ...+.+.+.++|++++..  .+++|||+| |+..|++|+++++++|++++++
T Consensus       396 ~~~~g~~~~~~~~~~-------~~~l~~~L~~~Gi~v~~~--~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          396 VEERGCQLTITFSVP-------NKDVFQELEKRGVVCDKR--NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             GGGBCSCEEEEECCT-------TCCHHHHHHTTTEECEEE--TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HhhcccEEEEEecCC-------HHHHHHHHHHCCEEEecC--CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            456788888888521       235778889999998864  368999999 9999999999999999999864

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=97.98  E-value=2.6e-05  Score=51.94  Aligned_cols=67  Identities=12%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..|.+..+++...     .....+.+.+.++|+++.+...     ..+.+|+++++..|++|+++++++|++++++
T Consensus       324 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          324 PGNHPIIPVMLGDA-----QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             CCSSSEEEEEEECH-----HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCH-----HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            56788888887532     2466788999999999986421     2368999999999999999999999999864

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.94  E-value=1.9e-05  Score=53.65  Aligned_cols=71  Identities=13%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             CceeeecccceEEE-EEeeeCCCCchHHHHHHHHHHHH-cCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGWGFMLG-VEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~Glm~g-ie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+..+++.|.|.+ +++.....    ....+.+.+++ +|+++.++.    ...+.+||.|+  .+++++++++++|++
T Consensus       344 ~~i~~~~~~~~~~~~v~~~~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~  417 (421)
T 3l8a_A          344 TKIKVMEPEGTYLVWLDFSAYAI----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIIS  417 (421)
T ss_dssp             CSCEEECCSBSSEEEEECGGGTC----CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             CCceEeCCCeeEEEEEeccccCC----CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence            55777888888888 88854211    13467777874 699998743    23589999999  599999999999999


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      +++
T Consensus       418 ~l~  420 (421)
T 3l8a_A          418 VFG  420 (421)
T ss_dssp             HC-
T ss_pred             HHh
Confidence            875

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=97.86  E-value=5e-05  Score=50.31  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+..+++....     ...++.+.+.++ |++++++.  ..++.+|+.| ++++|++|+++++++|++++++
T Consensus       318 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          318 RLPTITTVTVPAGY-----NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             BCSSEEEEECCTTB-----CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence            34677777774221     355788888887 99998642  2468999999 9999999999999999999853

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=97.85  E-value=8.7e-05  Score=48.60  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=52.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|++..+++.+..+   .....+.+.+.++|+++.++.. ..+.+|+.++...+++|+++++++|++++++
T Consensus       297 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          297 SPIITAFYSPEDPQ---YRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             CSSEEEEECCCCTT---CCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CceEEEEEcCccCC---CCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            57788888753101   1255788889999999987532 3679999999999999999999999998764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=97.84  E-value=4.8e-05  Score=51.85  Aligned_cols=64  Identities=6%  Similarity=0.008  Sum_probs=51.5

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.|+.+++.+     ......+.+.+.++|+++.++..     ..+.+|++++...|++|+++++++|+++++
T Consensus       345 ~~~~~~~~~~~-----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~  413 (427)
T 2w8t_A          345 DSAIVAVMLED-----QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR  413 (427)
T ss_dssp             CSSEEEEEESS-----HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECC-----HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            67788888742     12466788999999999987532     136899999999999999999999999875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.84  E-value=5.6e-05  Score=50.65  Aligned_cols=67  Identities=12%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..|.++.+++..     ......+.+.+.++|+++.++..     ..+.+|+.++..++++|+++++++|++++++
T Consensus       320 ~~~g~~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          320 ATESPILPIFIRS-----NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             SCCSSEEEEECCC-----HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCC-----HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            4558888888742     12456788899999999988632     2478999999999999999999999998753

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=97.81  E-value=5.7e-05  Score=50.01  Aligned_cols=51  Identities=25%  Similarity=0.409  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++ |++++++.  ..++.+|+.|++.+|++|+++++++|++++++
T Consensus       320 ~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          320 AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            56788889888 99998752  24689999999999999999999999999864

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=97.80  E-value=0.00018  Score=48.88  Aligned_cols=72  Identities=10%  Similarity=0.071  Sum_probs=52.7

Q ss_pred             ecccc-eEEEEEeeeCCCCc-hHHHHHHHHHHHHc-CceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWG-FMLGVEFVTDSQLR-KAETLDVMDKMKQM-GVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~G-lm~gie~~~~~~~~-~~~~~~v~~~~~~~-Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +++.| +++.+++....... ......+.+.++++ |+++.++.    ...+.+||.++.+ |++++++++++|++++++
T Consensus       353 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          353 LNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             CCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence            34444 89888886422111 22355788888876 99998743    2368999999887 999999999999998863

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=97.77  E-value=8e-05  Score=49.36  Aligned_cols=63  Identities=8%  Similarity=0.030  Sum_probs=50.5

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ++.|.|..+++..+.     ....+.+.+.++|++++++. ..+.+|+++++..+++|+++++++|+++
T Consensus       326 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~-~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          326 APQAGLVSFTVDSPL-----GHRAIVQKLEEQRIYLRTIA-DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             CCSSSEEEEEECSSS-----CHHHHHHHHHHTTEECEEET-TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             cccccEEEEEcCCCC-----CHHHHHHHHHHCCEEEEecC-CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence            567888888884221     24568888889999998863 3589999999999999999999998754

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.76  E-value=9e-05  Score=49.58  Aligned_cols=67  Identities=9%  Similarity=0.007  Sum_probs=53.2

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.|.+..+++...     .....+.+.+.++|+++.++..     ..+.+|+.+++..+++|+++++++|++++++
T Consensus       325 ~~~~~~~~~~~~~~-----~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          325 GADHAIIPVMLGDA-----VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             CSSSSEEEEEEECH-----HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCh-----HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            35788888888421     2456788899999999987532     1358999999999999999999999998753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=97.75  E-value=8.9e-05  Score=48.97  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+++.++. .++.+|+.+++..|++|+++++++|+++++
T Consensus       348 ~~~~~~~l~~~gi~v~~~~-~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          348 YKEVCKKLRDRGIYVSVCN-CVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHHHHTTCBCEECS-SSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCeEEeccC-CCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            4578889999999998864 468999999999999999999999999875

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=97.73  E-value=0.00014  Score=48.77  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=50.5

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|+++.+++..+.     ....+.+.+.++|+++.++..      ..+.+|+.++.. +++|+++++++|+++++
T Consensus       322 ~~g~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          322 KGGMFVWMELPKGL-----SAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK  391 (397)
T ss_dssp             SBSSEEEEECSTTC-----CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCC-----CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence            45888888885321     245788889999999987531      357999999985 99999999999999875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=97.72  E-value=0.00021  Score=47.11  Aligned_cols=64  Identities=20%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|.++.+.+.. .     ....+.+.+.++|+.+++.. ...+.+|+.++...|++|+++++++|+++++
T Consensus       297 ~~~~~~~~~~~~-~-----~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  361 (384)
T 3zrp_A          297 YSNTVTGVILKV-A-----DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLR  361 (384)
T ss_dssp             BCSSEEEEECSS-S-----CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCccEEEEECCC-C-----CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            346777777743 1     35678889999999998753 1128899999999999999999999999885

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=97.71  E-value=0.00024  Score=48.08  Aligned_cols=69  Identities=6%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             cceEEEEEeeeCCCCc-hHHHHHHHHHHHHc-CceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLR-KAETLDVMDKMKQM-GVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~-~~~~~~v~~~~~~~-Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|+|..+++....... ......+.+.++++ |++++++...    .+.+|+.++ ..+++++++++++|++++++
T Consensus       352 ~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          352 AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            5888888885321111 12345788888876 9999886422    468999999 68999999999999999864

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.71  E-value=8.8e-05  Score=48.58  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.+.+.++|+++.++....+.+|++|++..|++|+++++++|++++++
T Consensus       304 ~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          304 AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            6788888999999864322689999999999999999999999998754

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=97.66  E-value=0.00022  Score=47.29  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CceeeecccceEEE-EEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGWGFMLG-VEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~Glm~g-ie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+.-++..|.+.. +++....    .....+.+.+.++ |++++++..    ..+.+|++++  .+++++++++++|++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~  388 (391)
T 4dq6_A          315 PKLKVRKPEGTYLLWVDFSALG----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKN  388 (391)
T ss_dssp             TTSEECCCSBSSEEEEECGGGC----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             CCCEecCCCccEEEEEEhhhcC----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            44455556665555 7775311    1355788889888 999987532    2489999988  699999999999999


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      +++
T Consensus       389 ~l~  391 (391)
T 4dq6_A          389 AIN  391 (391)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            874

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=97.63  E-value=0.00024  Score=47.98  Aligned_cols=63  Identities=16%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|+++.+++...      ....+.+.+.++|+++.++|        ...+.+||+++.. +++++++++++|.++++
T Consensus       343 ~~g~~~~~~~~~~------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~  413 (423)
T 3ez1_A          343 KGGYFISLDTAEP------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIR  413 (423)
T ss_dssp             SBSSCEEEEESSS------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEEECCCC------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence            3578888888532      24567788999999998843        1358999999877 99999999999999875

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.61  E-value=0.00071  Score=44.89  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.|..+.+. +.     ....+.+.+.++|+++.++..          ..+.+|+.++...|++|+++++++|+++++
T Consensus       331 ~~~~~~~~~~-~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  403 (406)
T 1kmj_A          331 RLGVIAFNLG-KH-----HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  403 (406)
T ss_dssp             CCSEEEEEET-TC-----CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEC-CC-----CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            6778888763 11     244677888999999886421          148999999999999999999999999875

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=97.61  E-value=0.00027  Score=47.16  Aligned_cols=66  Identities=18%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+..+.+....     ....+.+.++++ |+.+++..  ..++.+|+.+ +++.|++|+++++++|++++++
T Consensus       320 ~~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          320 KMNNVLGVVIPQGI-----NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             BCSSEEEEECCTTC-----CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ccccEEEEECCCCC-----CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence            35677777763221     245788888876 99998642  2467999999 9999999999999999998863

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.60  E-value=0.00032  Score=46.38  Aligned_cols=64  Identities=19%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.+..+++....     ....+.+.+.++|+.+.++..  ..+.+|+.++...|++|+++++++|+++++
T Consensus       312 ~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  377 (386)
T 2dr1_A          312 SPTITAVLTPPGI-----KGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN  377 (386)
T ss_dssp             CSSEEEEECCTTC-----CHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCC-----CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            5778888774221     255788889999999987531  357999999999999999999999999875

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=97.59  E-value=0.00044  Score=45.61  Aligned_cols=66  Identities=12%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +.+.-++..|.++.+++..       ....+.+.+.++|+++.++..  .++.+|++++   +++|+++++++|++++
T Consensus       296 ~g~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          296 EKVKLYPANGNFVLIDLGI-------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             TTCEECCCCSSEEEEECSS-------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             CCceECCCCCeEEEEECCC-------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence            3344456778888887743       245688889999999988532  2689999987   9999999999998864

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=97.55  E-value=0.00033  Score=46.99  Aligned_cols=60  Identities=15%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP-LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|.+..+++.+        ...+.+.+.++|+++...  ..+.+|+.++ +.+|++|+++++++|++++++
T Consensus       341 ~~~~~~~~~~~--------~~~l~~~l~~~gi~~~~~--~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          341 RGSHVSFEHPE--------GYAVIQALIDRGVIGDYR--EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             BCSEEEEECTT--------HHHHHHHHHTTTEECEEE--TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEecCC--------HHHHHHHHHhCCcEeccC--CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            45667776631        456888899999988754  3689999998 899999999999999998753

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.53  E-value=0.00021  Score=46.88  Aligned_cols=63  Identities=10%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.|+.+++....    .....+.+.+.++|+.+++.+  .+.+|+.+++.++++|+++++++|+++++
T Consensus       282 ~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          282 KTNMVILRTDNLK----VNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFR  344 (347)
T ss_dssp             CSSEEEEECTTSS----SCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEccccc----CCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            3556667763211    124578888889999998764  57899999999999999999999999875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=97.53  E-value=0.00023  Score=47.76  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----------CCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----------GNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----------~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ..|++..+++....    .....+.+.+.++|+++.++...           .+.+||+++.  +++++++++++|.+++
T Consensus       337 ~~g~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l  410 (417)
T 3g7q_A          337 EGAIFLWLWFKDLP----ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEI  410 (417)
T ss_dssp             CBSSEEEEECTTCS----SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEcCCCC----CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence            45888888875311    12456788889999999875321           4689999996  9999999999999988


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       411 ~~  412 (417)
T 3g7q_A          411 ER  412 (417)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.53  E-value=0.00022  Score=48.69  Aligned_cols=51  Identities=12%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             HHHHHHHH-HHcCceeeecCC---------------CCCEEEEecCcc-cCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKM-KQMGVLIGKGGF---------------YGNVFRIAPPLC-FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~-~~~Gll~~~~g~---------------~~~~i~~~PPL~-i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+.+ .++|+.+.+++.               ..+.+||+||+. +|++|+++++++|++++++
T Consensus       374 ~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          374 AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence            56678888 889999987442               127999999999 9999999999999998853

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=97.50  E-value=0.00019  Score=48.04  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..|++..+++..+.     ....+.+.+.++ |+++.++..      ..+.+|++++.. |++|+++++++|+++++
T Consensus       332 ~~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~  402 (407)
T 2zc0_A          332 IAGMFVMFFLPEGA-----DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK  402 (407)
T ss_dssp             SBSSEEEEECSTTC-----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCC-----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence            45788888874321     245688888888 999987531      257999999988 99999999999999875

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=97.48  E-value=0.00033  Score=48.25  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=49.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      -|++..+++....     ....+.+.+.++|+++.++..      ..+.+|++++. .+++++++++++|.++++
T Consensus       375 ~g~~~~v~~~~~~-----~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~  443 (448)
T 3aow_A          375 GGMFIWVTLPDGI-----DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIK  443 (448)
T ss_dssp             BSSEEEEECSTTC-----CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCC-----CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence            4788888884321     245788889999999987531      35789999987 499999999999999875

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.47  E-value=0.00035  Score=45.60  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.+..+++....     ....+.+.+.++|+.+.++..  ..+.+|+.++...|++|+++++++|+++++
T Consensus       281 ~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  346 (352)
T 1iug_A          281 SPAVAAFYLPEGV-----PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE  346 (352)
T ss_dssp             CTTCEEEECCTTC-----CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCC-----CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH
Confidence            4667777764211     245788889999999987531  357999999999999999999999999875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.45  E-value=0.00054  Score=46.29  Aligned_cols=68  Identities=7%  Similarity=0.053  Sum_probs=48.8

Q ss_pred             cceEEEEEeeeCCCC------c-hHHHHHHHHHHH-HcCceeeecCCC---------CCEEEEecCcccCHHHHHHHHHH
Q 042283           12 WGFMLGVEFVTDSQL------R-KAETLDVMDKMK-QMGVLIGKGGFY---------GNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus        12 ~Glm~gie~~~~~~~------~-~~~~~~v~~~~~-~~Gll~~~~g~~---------~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      .|+++.+++......      . ......+.+.+. ++|+++.++...         .+.+||+++.  +++++++++++
T Consensus       344 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~  421 (429)
T 1yiz_A          344 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK--KDENLQKAAEI  421 (429)
T ss_dssp             BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS--CHHHHHHHHHH
T ss_pred             cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC--CHHHHHHHHHH
Confidence            488888988542100      0 013456777776 799999875311         5799999993  99999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      |+++++.
T Consensus       422 l~~~l~~  428 (429)
T 1yiz_A          422 LRKWKGS  428 (429)
T ss_dssp             HHHHSCC
T ss_pred             HHHhccC
Confidence            9998764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=97.45  E-value=0.00016  Score=49.37  Aligned_cols=50  Identities=16%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             HHHHHHHH-HHcCceeeecCC---------------CCCEEEEecC-cccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKM-KQMGVLIGKGGF---------------YGNVFRIAPP-LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~-~~~Gll~~~~g~---------------~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+ .++|+.+.++|.               ..+.+||+|| +++|++|+++++++|+++++
T Consensus       373 ~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  439 (467)
T 1ax4_A          373 AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  439 (467)
T ss_dssp             HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            45788888 889999987321               1279999999 77999999999999998875

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.45  E-value=0.00025  Score=48.13  Aligned_cols=65  Identities=12%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.|++..+++....     ....+.+.+.++|+++.++..      ..+.+|+.++.. +++++++++++|+++++
T Consensus       346 ~~~g~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~  416 (425)
T 1vp4_A          346 SEGGLFIWLTLPEGF-----DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVL  416 (425)
T ss_dssp             CSBSSEEEEECCTTC-----CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCC-----CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence            345888888885321     123577788888999987532      257899999985 99999999999999875

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=97.43  E-value=0.00091  Score=44.16  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=51.7

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +|.+.-....|.+..+++.        ....+.+.+.++|++++++..    ..+.+|++..   +++|+++++++|+++
T Consensus       296 ~~g~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~  364 (367)
T 3euc_A          296 HGGVTVFPSAANFLLARVP--------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAAS  364 (367)
T ss_dssp             STTCEECCCSSSEEEEECS--------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             CCCcEECCCCCeEEEEECC--------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHH
Confidence            3445545667888888774        134677888999999987542    3589999965   999999999999998


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       365 l~~  367 (367)
T 3euc_A          365 LQD  367 (367)
T ss_dssp             TCC
T ss_pred             hcC
Confidence            753

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=97.43  E-value=0.0006  Score=46.27  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC------------CCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY------------GNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~------------~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..|++..+++....    .....+.+.+.++|+++.++...            .+.+||+++.  +++++++++++|.++
T Consensus       363 ~~g~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~  436 (444)
T 3if2_A          363 EGAIFLWLWFKDLP----ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEV  436 (444)
T ss_dssp             CBSSEEEEEETTCS----SCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCC----CCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHH
Confidence            45888888885311    12456788889999999875321            1689999998  999999999999988


Q ss_pred             Hh
Q 042283           79 MT   80 (82)
Q Consensus        79 l~   80 (82)
                      +.
T Consensus       437 ~~  438 (444)
T 3if2_A          437 VR  438 (444)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=97.42  E-value=0.00047  Score=45.96  Aligned_cols=67  Identities=13%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCc----ccCHHHHHHHHHHHHHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPL----CFTKEDANYLVDVMDCS   78 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL----~i~~~eid~~~~~l~~~   78 (82)
                      +.|.+..+++....    .....+.+.+.++|++++++.        ...+.+|++++.    .++++|+++++++|+++
T Consensus       308 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~  383 (405)
T 2vi8_A          308 TDNHLLLVDLRPQQ----LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV  383 (405)
T ss_dssp             CSSSEEEEECGGGT----CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEccCCC----CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence            45788888885311    024567788889999998742        124689999998    68999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       384 ~~~  386 (405)
T 2vi8_A          384 LKN  386 (405)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            864

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=97.41  E-value=0.0013  Score=43.70  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++..|.+..+++..       ....+.+.+.++|+++.+++ ..+.+|+.++   +++|+++++++|+++++.
T Consensus       306 ~~~~~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          306 VPSESNFVFFGDFS-------DQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             ECCSSSEEEEECCS-------SHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEEECCC-------CHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence            45667888887741       24567788889999998863 3589999998   899999999999998864

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=97.40  E-value=0.00072  Score=45.13  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.|.|..+.+.. .     ....+.+.+.++|+.+.++.          ...+.+|+.++...+++|+++++++|+++++
T Consensus       338 ~~~~~~~~~~~~-~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~  411 (420)
T 1t3i_A          338 DRAALASFNVAG-L-----HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR  411 (420)
T ss_dssp             CBCSEEEEEETT-B-----CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECC-C-----CHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            358888887631 1     24467788899999998751          0157899999999999999999999998875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=97.38  E-value=0.00029  Score=47.03  Aligned_cols=68  Identities=15%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--------CCCEEEEecCcc----cCHHHHHHHHHHHHH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--------YGNVFRIAPPLC----FTKEDANYLVDVMDC   77 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--------~~~~i~~~PPL~----i~~~eid~~~~~l~~   77 (82)
                      ++.|.+..+++....    .....+.+.+.++|+++.++..        ..+.+|++++..    .|++|+++++++|++
T Consensus       308 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~  383 (407)
T 2dkj_A          308 GTDNHLFLVDLRPKG----LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR  383 (407)
T ss_dssp             SCSSSEEEEECGGGT----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred             CCCceEEEEECcccC----CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence            457888888885311    0245677888899999987521        256899999875    899999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      ++++
T Consensus       384 ~~~~  387 (407)
T 2dkj_A          384 ALLE  387 (407)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=97.38  E-value=0.00042  Score=45.51  Aligned_cols=64  Identities=11%  Similarity=-0.040  Sum_probs=49.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |.+..+++..     .....++.+.+.++|+.+.++....+.+|+.+....+++++++++++|++++++
T Consensus       296 ~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          296 LMNVTFNLRN-----EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SSEEEEECSS-----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCC-----CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            5577777632     123556788888999998775334578999999999999999999999998764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=97.38  E-value=0.00062  Score=46.12  Aligned_cols=61  Identities=20%  Similarity=0.359  Sum_probs=48.7

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++..+++...      ....+.+.+.++||++.+++        ...+.+||+++.. +++++++++++|.++++
T Consensus       350 g~~~~~~~~~~------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~  418 (427)
T 3ppl_A          350 GYFISLDVVPG------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL  418 (427)
T ss_dssp             SSCEEEECSTT------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCcc------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH
Confidence            78888887532      24567788899999998832        1468999999877 99999999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=97.37  E-value=0.0022  Score=42.05  Aligned_cols=69  Identities=9%  Similarity=0.032  Sum_probs=52.1

Q ss_pred             CCcee-eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            3 YGTIG-DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         3 ~~~v~-~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      +|.+. ..++.|.++.+++...      ....+.+.+.++|+++.++..    ..+.+|++++   ++++++++++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~  356 (361)
T 3ftb_A          286 IGFIKRVFSPHANFVLCRLENI------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKG  356 (361)
T ss_dssp             SSSEEEEECCSSSEEEEEESSS------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred             CCCCceecCCCCeEEEEEcCCC------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence            45555 6677888888888531      245788889999999987532    2589999987   88888888888887


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      ..+
T Consensus       357 ~~~  359 (361)
T 3ftb_A          357 VEN  359 (361)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.37  E-value=0.00023  Score=47.32  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +.|.|..+++..     ......+.+.+.++|+++.++..     ..+.+|+.++..+|++|+++++++|+++
T Consensus       316 ~~~~~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          316 SCSAIQPLIVGD-----NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             CCSSBCCEEEES-----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCC-----HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            557777777742     12456788899999999987532     1378999999999999999999999874

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=97.35  E-value=0.00066  Score=45.06  Aligned_cols=62  Identities=15%  Similarity=0.050  Sum_probs=47.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|++..+++....     ....+.+.+.++|+++.++..    ..+.+|+.++.  +++++++++++|+++++
T Consensus       311 ~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l~  376 (376)
T 2dou_A          311 ATMYLWGRLPEGV-----DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREALD  376 (376)
T ss_dssp             BSSEEEEECCTTC-----CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC-
T ss_pred             eeEEEEEECCCCC-----CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHhC
Confidence            4777888875321     245688889999999987532    25799999985  89999999999998763

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=97.32  E-value=0.0012  Score=43.64  Aligned_cols=63  Identities=8%  Similarity=0.072  Sum_probs=49.5

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.|++..+++.        ....+.+.+.+ +|+++.++.      ...+.+|+.++.  |++++++++++|++++++
T Consensus       305 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          305 IYPYSFYVYLPVQ--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             CCSBSSEEEEECS--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred             CCCcceEEEEECC--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            4566888888774        13467788887 899998742      245899999884  999999999999999864

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=97.32  E-value=0.0005  Score=46.53  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++. +.     ....+.+.+.+ +|+++.++  ..+.+|++++.+ +++++++++++|++++++
T Consensus       368 g~~~~~~~~-~~-----~~~~~~~~l~~~~gi~v~~g--~~~~iRis~~~~-~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          368 GYFMAIKVH-DV-----DPEALRKHLIDKYSIGVIAL--NATDIRIAFSCV-EKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             SSEEEEEES-SS-----CHHHHHHHHHHHHCEECEEC--SSSEEEEEGGGS-CGGGHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCC-CC-----CHHHHHHHHHHhCCEEEecC--CCCeEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence            677888885 21     24567888887 99999986  367899999974 999999999999998853

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=97.31  E-value=0.00081  Score=44.70  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.+..+++....     ....+.+.+.++ |++++++.  ...+.+|+.+ +++.+++|+++++++|+++++
T Consensus       314 ~~~~~~~~~~~~~-----~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~  381 (396)
T 2ch1_A          314 LPTVTGIMIPKGV-----DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK  381 (396)
T ss_dssp             CTTEEEEECCTTC-----CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCC-----CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence            3456677663211     245688888875 99998642  1368999999 899999999999999999875

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=97.28  E-value=0.00086  Score=44.52  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC--CCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF--YGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~--~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.+..+++....     ....+.+.+.++ |++++++..  ..+.+|+.+ +++.+++++++++++|+++++
T Consensus       315 ~~~~~~~~~~~~-----~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~  381 (393)
T 2huf_A          315 STVTTIKVPQGV-----DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVA  381 (393)
T ss_dssp             TTEEEEECCTTC-----CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCC-----CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence            557777763211     245677888764 999986421  358999999 889999999999999999875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=97.28  E-value=0.0011  Score=44.95  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|+++.+++...      ....+.+.+.++||++.+++.        ..+.+||+++. .+++++++++++|+++++
T Consensus       347 ~g~~~~~~~~~~------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~  416 (422)
T 3d6k_A          347 GGYFISVDVVPG------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVL  416 (422)
T ss_dssp             BSSCEEEEESTT------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCC------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence            477788887432      134577788899999988432        24789999999 999999999999999875

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=97.26  E-value=0.00074  Score=45.05  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=50.1

Q ss_pred             Cceeeeccc-ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGW-GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~-Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+.-++.. |++..+++....    .....+.+.+++ +|+++.++..    ..+.+|++++.  +++++++++++|++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~  400 (407)
T 3nra_A          327 EGVFARTPQAGSYLFPRLPKLA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVT  400 (407)
T ss_dssp             TTCBCCCCSBSSEECCBCCCBS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred             CCceeccCCeeEEEEEeCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence            334333444 477777664311    134567777865 6999987532    35899999985  99999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      ++++
T Consensus       401 ~~~~  404 (407)
T 3nra_A          401 LVER  404 (407)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.25  E-value=0.0012  Score=44.21  Aligned_cols=64  Identities=16%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec--C--------------------------CCCCEEEEecC
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG--G--------------------------FYGNVFRIAPP   60 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~--g--------------------------~~~~~i~~~PP   60 (82)
                      .||.|.|+++++...       ...+.+.+.++|++++..  |                          ...+.+|++|+
T Consensus       293 ~~~~~~~~~~~~~~~-------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~  365 (386)
T 1cs1_A          293 QKGFGAMLSFELDGD-------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG  365 (386)
T ss_dssp             CSSCCSEEEEEESSC-------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC
T ss_pred             cCCCceEEEEEECCC-------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc
Confidence            478899999998531       335667778899988741  1                          12589999999


Q ss_pred             cccCHHHHHHHHHHHHHhH
Q 042283           61 LCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        61 L~i~~~eid~~~~~l~~~l   79 (82)
                      +--++++++.+.++++++.
T Consensus       366 ~~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          366 IEDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             SSCHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHhh
Confidence            9888888888888887764

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=97.25  E-value=0.0011  Score=43.17  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHH-HHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDAN-YLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid-~~~~~l~~~l~~   81 (82)
                      .+.+..+++....     ....+.+.+.++|+.+.++.  ...+.+|+.++...+++|++ +++++|++++++
T Consensus       285 ~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          285 LPTVLVVRPPEGV-----DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             CTTEEEEECCTTC-----CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCC-----CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            4666677763211     24578888999999998743  13578999999899999999 999999998864

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=97.25  E-value=0.0018  Score=42.63  Aligned_cols=63  Identities=17%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....|.+..+++...      ....+.+.+.++|+++.++... .+.+|++..   +++|+++++++|+++++
T Consensus       302 ~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          302 IDSYTNFITYFFDEK------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             CCCSSSEEEEECSSS------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEEECCCC------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence            456677877777432      2457888899999999886422 589999976   89999999999998873

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=97.23  E-value=0.0018  Score=43.43  Aligned_cols=64  Identities=17%  Similarity=0.208  Sum_probs=49.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +.+..+++....     ....+.+.+.++|+.++++..  .++.+|+++....|++|+++++++|++++++
T Consensus       332 ~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          332 QVVGTIDFVDDV-----DAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             SSEEEEEECTTS-----CHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCC-----CHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            557777773211     245788889999999876311  2478999999999999999999999998864

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=97.20  E-value=0.0011  Score=43.26  Aligned_cols=62  Identities=11%  Similarity=0.110  Sum_probs=47.6

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------------------------CCCCEEEEecCc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------------------------FYGNVFRIAPPL   61 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------------------------~~~~~i~~~PPL   61 (82)
                      ++.|.|.++++. +       ...+.+.+.++|++++...                            ...+.+|+++++
T Consensus       242 ~~~~~~~~~~~~-~-------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~  313 (331)
T 1pff_A          242 KMFGSMIAFDVD-G-------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC  313 (331)
T ss_dssp             SSCCSEEEEECS-S-------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS
T ss_pred             CCCceEEEEEEC-C-------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEec
Confidence            678899999885 1       2356677888999775431                            125899999999


Q ss_pred             ccCHHHHHHHHHHHHHhH
Q 042283           62 CFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        62 ~i~~~eid~~~~~l~~~l   79 (82)
                      ..++++++.+.+++++++
T Consensus       314 ~~t~~~i~~l~~~l~~~~  331 (331)
T 1pff_A          314 ENVQDIIDDLKQALDLVL  331 (331)
T ss_dssp             SCHHHHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999998653

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=97.20  E-value=0.0013  Score=43.56  Aligned_cols=64  Identities=14%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      .|.+..+++....     ....+.+.+.++ |+.+.++.  ...+.+|+.| ++..|++|+++++++|+++++
T Consensus       302 ~~~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~  369 (392)
T 2z9v_A          302 SPTTTAVRTPDGV-----DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMN  369 (392)
T ss_dssp             CTTEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCC-----CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHH
Confidence            4667777763211     245688888887 99998753  2368999997 558999999999999999875

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.18  E-value=0.0005  Score=44.91  Aligned_cols=49  Identities=6%  Similarity=0.114  Sum_probs=38.4

Q ss_pred             HHHHHHHHc-CceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           33 DVMDKMKQM-GVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        33 ~v~~~~~~~-Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.+.+.++ |+++.... ...+.+|++|++..+++|+++++++|++++++
T Consensus       307 ~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          307 TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence            677888888 99885421 13568999999999999999999999998753

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=97.15  E-value=0.0016  Score=43.56  Aligned_cols=66  Identities=14%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec------C--CCCCEEEEecCcc----cCHHHHHHHHHHHHHhH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG------G--FYGNVFRIAPPLC----FTKEDANYLVDVMDCSM   79 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~------g--~~~~~i~~~PPL~----i~~~eid~~~~~l~~~l   79 (82)
                      .+.+..+++....    .....+.+.+.++|+++.+.      +  ...+.+||.||++    +++++++++++++++++
T Consensus       318 ~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l  393 (420)
T 3gbx_A          318 ENHLFLLDLVDKN----LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVL  393 (420)
T ss_dssp             SSSEEEEECGGGT----CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCC----CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHH
Confidence            4556666664321    12456777788899999872      1  1245699999987    56999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       394 ~~  395 (420)
T 3gbx_A          394 DN  395 (420)
T ss_dssp             HT
T ss_pred             hC
Confidence            64

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.14  E-value=0.0015  Score=44.57  Aligned_cols=69  Identities=12%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             ceEEEEEeee--CCCCchHH-HHHHHHHH-HHcCceeeecCC---------------CCCEEEEecCcc-cCHHHHHHHH
Q 042283           13 GFMLGVEFVT--DSQLRKAE-TLDVMDKM-KQMGVLIGKGGF---------------YGNVFRIAPPLC-FTKEDANYLV   72 (82)
Q Consensus        13 Glm~gie~~~--~~~~~~~~-~~~v~~~~-~~~Gll~~~~g~---------------~~~~i~~~PPL~-i~~~eid~~~   72 (82)
                      |.++.+++..  +.....+. ...+.+.+ .++|+.+.+++.               ..+.+||++|+. +|++|+++++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~  421 (456)
T 2ez2_A          342 GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVA  421 (456)
T ss_dssp             SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHH
T ss_pred             ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHH
Confidence            5666666532  11111223 45557777 578998655331               137899999998 8999999999


Q ss_pred             HHHHHhHhc
Q 042283           73 DVMDCSMTK   81 (82)
Q Consensus        73 ~~l~~~l~~   81 (82)
                      ++|++++++
T Consensus       422 ~~l~~~l~~  430 (456)
T 2ez2_A          422 DGIIKLYQH  430 (456)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998753

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.14  E-value=0.00033  Score=46.99  Aligned_cols=46  Identities=15%  Similarity=0.075  Sum_probs=39.0

Q ss_pred             HHHHHHcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           35 MDKMKQMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        35 ~~~~~~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+.++|+++.+...       .++++|++|+...|++||++++++|+++++
T Consensus       322 ~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~  374 (379)
T 3ke3_A          322 GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD  374 (379)
T ss_dssp             SHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence            5678899999876421       168999999999999999999999999875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=97.12  E-value=0.0019  Score=42.73  Aligned_cols=63  Identities=14%  Similarity=0.145  Sum_probs=46.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++....    .....+.+.++ ++|+++.++..    ..+.+|+.+.  .+++++++++++|.+++++
T Consensus       321 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  388 (391)
T 3dzz_A          321 SYLAWVDISALG----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLN  388 (391)
T ss_dssp             SSEEEEECGGGC----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEehhhcC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            444446664321    13557888886 89999987532    2378999988  5999999999999999864

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.11  E-value=0.0013  Score=44.16  Aligned_cols=51  Identities=8%  Similarity=0.009  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCceeeecCCC-------------------------CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGFY-------------------------GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~-------------------------~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+++++....                         .+.+|+.++..+|++|+++++++|++++++
T Consensus       320 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  395 (399)
T 2oga_A          320 RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER  395 (399)
T ss_dssp             HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            457888899999998763210                         168999999999999999999999998864

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.11  E-value=0.0011  Score=44.52  Aligned_cols=64  Identities=14%  Similarity=0.072  Sum_probs=46.6

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++....+   ....++.+.++ ++|+++.++...    .+.+|++++  .+++++++++++|.+++++
T Consensus       334 ~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          334 AFYIFPKIEVGPW---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             SSEECCEECSCSC---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCccCC---CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            6666666642100   12456778887 899999875321    578999998  8999999999999998863

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.10  E-value=0.0017  Score=43.75  Aligned_cols=61  Identities=15%  Similarity=0.063  Sum_probs=46.6

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHc------CceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQM------GVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~------Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .|++..+++. +.     ....+.+.+.++      |+++.++..       ..+.+|+.++  .+++++++++++|+++
T Consensus       327 ~~~~~~~~~~-~~-----~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~  398 (409)
T 2gb3_A          327 GAFYITAELP-VE-----DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEG  398 (409)
T ss_dssp             BSSEEEEECS-SS-----CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEeC-CC-----CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence            3677777774 11     245678888877      999987521       2579999999  8999999999999998


Q ss_pred             Hh
Q 042283           79 MT   80 (82)
Q Consensus        79 l~   80 (82)
                      ++
T Consensus       399 l~  400 (409)
T 2gb3_A          399 LK  400 (409)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.10  E-value=0.0024  Score=42.55  Aligned_cols=72  Identities=8%  Similarity=-0.035  Sum_probs=50.7

Q ss_pred             Cceeeecccc-eEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGWG-FMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~G-lm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+.-+++.| ++..+++.....    ....+.+.+. ++|+++.++..    ..+.+|++++.  ++++++++++++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~  384 (390)
T 1d2f_A          311 PELNWQIPQSTYLAWLDLRPLNI----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLIN  384 (390)
T ss_dssp             SSCCCCCCSBCSEEEEECGGGCC----CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             CCCEEecCCccEEEEEEccccCC----CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            4344455554 555677743200    2456888888 68999987532    25799999997  58999999999999


Q ss_pred             hHhc
Q 042283           78 SMTK   81 (82)
Q Consensus        78 ~l~~   81 (82)
                      ++++
T Consensus       385 ~l~~  388 (390)
T 1d2f_A          385 AIRA  388 (390)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8864

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=97.09  E-value=0.0014  Score=44.24  Aligned_cols=64  Identities=14%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..|++..+++. ..     ....+.+.+.++|+++.+....    .+.+|++++.+ +++++++++++|.+++++
T Consensus       369 ~~~~~~~~~~~-~~-----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          369 ADGFYFTVGYK-GM-----DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CSSSEEEEEET-TC-----CHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEecC-CC-----CHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            45777777774 21     3557888899999999875321    17899999955 999999999999998753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=97.09  E-value=0.0016  Score=43.43  Aligned_cols=65  Identities=14%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHH-HHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKED-ANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~e-id~~~~~l~~~l~~   81 (82)
                      .|.+..+.+.++.     ....+.+.+.++ |+.+.++.  ..++.+|+.++...+++| +++++++|++++++
T Consensus       321 ~~~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          321 MPVVTCVEIPGGI-----DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             CTTEEEEECCTTC-----CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCC-----CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            3677777774221     255788888876 99988642  246899999976666666 99999999998763

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.09  E-value=0.0022  Score=42.57  Aligned_cols=69  Identities=9%  Similarity=-0.039  Sum_probs=49.9

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----------------------CCEEEEecCcccCHH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----------------------GNVFRIAPPLCFTKE   66 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----------------------~~~i~~~PPL~i~~~   66 (82)
                      ++.+.+..+++..+..  ......+.+.+.++|+.+++....                       .+.+|+.+...+|++
T Consensus       293 ~~~~~~~~v~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~  370 (393)
T 1mdo_A          293 IHAWHLFIIRVDEARC--GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTES  370 (393)
T ss_dssp             ECCCSCEEEECCHHHH--SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHH
T ss_pred             CceeEEEEEEeccccc--ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHH
Confidence            4556677787752000  012557888899999988763211                       247999999999999


Q ss_pred             HHHHHHHHHHHhHh
Q 042283           67 DANYLVDVMDCSMT   80 (82)
Q Consensus        67 eid~~~~~l~~~l~   80 (82)
                      |++.++++|++++.
T Consensus       371 ~i~~~~~~l~~~~~  384 (393)
T 1mdo_A          371 DFDRVITALHQIAG  384 (393)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=97.09  E-value=0.0025  Score=42.50  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=46.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++..+++...      ....+.+.+.++|+++.++..  ..+.+|+...  .+++++++++++|.++++
T Consensus       333 ~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~  394 (398)
T 3ele_A          333 AFYMFVKALED------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYK  394 (398)
T ss_dssp             SSEEEEECSSS------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCC------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            56566766321      245677888999999988532  2579999985  699999999999999885

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=97.08  E-value=0.0031  Score=41.68  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +|.+.-++..|.++.+++..+       ...+.+.+.++|+++.++..    ..+.+|++.   .+++|++++++++++.
T Consensus       287 ~~~~~~~~~~g~~~~~~~~~~-------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~  356 (364)
T 1lc5_A          287 LPLLTVYPGRANYLLLRCERE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNV  356 (364)
T ss_dssp             STTEEECCCSSSEEEEEESCT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHH
T ss_pred             CCCCEECCCCCeEEEEECCCc-------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHH
Confidence            344554567788888877432       22477788899999988542    257999994   4799999999999988


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       357 ~~~  359 (364)
T 1lc5_A          357 LTG  359 (364)
T ss_dssp             C--
T ss_pred             hhc
Confidence            753

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.07  E-value=0.0021  Score=42.79  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=46.6

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++....    ..+..+.+.++++ |+++.++..     ..+.+|++++.  +++++++++++|++++++
T Consensus       313 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          313 AFYVYADVSDLT----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             TTEEEEECTTTC----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCccC----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence            477777774311    1245677887775 999987532     25689999988  899999999999998864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=97.01  E-value=0.0015  Score=43.63  Aligned_cols=64  Identities=20%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |.+..+++..     ......+.+.++ ++|+++.++..     ..+.+|+++++..|++|+++++++|++++++
T Consensus       330 ~~~~~~~~~~-----~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          330 SHIVPVVIGD-----PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             SSCEEEECCC-----HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             CCeEEEEeCC-----hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            3466676632     123557888886 78999987531     1258999999999999999999999998753

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=97.01  E-value=0.0047  Score=40.42  Aligned_cols=62  Identities=26%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +++.|.++.+++..       ....+.+.+.++|+++. +.  ...+.+|++..   +++|+++++++|++++++
T Consensus       288 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          288 LPSEGNFVFHQLVV-------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             CCCCSSEEEEECSS-------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCC-------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            45678888887743       24568888899999987 21  13689999954   899999999999999864

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=97.00  E-value=0.0013  Score=44.00  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccC----HHHHHHHHHHHHHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFT----KEDANYLVDVMDCS   78 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~----~~eid~~~~~l~~~   78 (82)
                      +.+.+..+++....    .....+.+.+.++|+++.+..        ...+.+|+.||...+    ++++++++++|+++
T Consensus       318 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~  393 (425)
T 3ecd_A          318 TDNHLLLVDLRPKG----LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV  393 (425)
T ss_dssp             CSSSEEEEECGGGT----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCCC----CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence            35667777764321    124567778888999998321        123689999988776    99999999999998


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       394 l~~  396 (425)
T 3ecd_A          394 FEA  396 (425)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            853

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.00  E-value=0.0025  Score=42.48  Aligned_cols=71  Identities=10%  Similarity=-0.002  Sum_probs=49.7

Q ss_pred             CceeeecccceE-EEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGWGFM-LGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~Glm-~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+..+++.|.+ ..+++....    .....+.+.++ ++|+++.++..    ..+.+|++++..  +++++++++++.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~  388 (399)
T 1c7n_A          315 PEIKAPLIEGTYLQWIDFRALK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNK  388 (399)
T ss_dssp             TTSBCCCCSBSSEEEEECGGGC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHH
T ss_pred             CCCeEecCCceEEEEEEcccCC----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHH
Confidence            444445565544 457775311    02456788887 68999987532    257999999975  8999999999999


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      +++
T Consensus       389 ~l~  391 (399)
T 1c7n_A          389 ALK  391 (399)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=96.99  E-value=0.0012  Score=45.31  Aligned_cols=50  Identities=14%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             HHHHHHHHHcCceee----ec----CCCCCEEEEecCcc----cCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIG----KG----GFYGNVFRIAPPLC----FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~----~~----g~~~~~i~~~PPL~----i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|+++.    +.    ...++.+|+.||.+    ++++|+++++++|++++++
T Consensus       352 ~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          352 QAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             HHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            345566667799987    22    12356789988877    7899999999999999864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=96.95  E-value=0.0091  Score=39.11  Aligned_cols=69  Identities=9%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      |.+.-....|.++.+++...      ....+.+.+.+ +|+++.++..    ..+.+|++..   +++|+++++++|++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~  338 (350)
T 3fkd_A          268 DGVEVHPSGTTFFLLRLKKG------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETF  338 (350)
T ss_dssp             TTEEECCCSSSEEEEEESSS------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             CCcEECCCCCcEEEEECCCC------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence            44444556778877777532      25578888888 9999987532    2679999965   889999999999988


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      +++
T Consensus       339 ~~~  341 (350)
T 3fkd_A          339 LEK  341 (350)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=96.95  E-value=0.0039  Score=41.81  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=50.1

Q ss_pred             Cceeeecc-cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            4 GTIGDARG-WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         4 ~~v~~vRg-~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |.+.-++. .|+++.+++....-........+.+.++ ++|+++.++..  ..+.+|+++  ..+++++++++++|.+++
T Consensus       333 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l  410 (416)
T 1bw0_A          333 IGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFC  410 (416)
T ss_dssp             TTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHH
Confidence            44443433 3777777774210000012456777774 89999987532  257899999  478999999999999988


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       411 ~~  412 (416)
T 1bw0_A          411 QR  412 (416)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=96.95  E-value=0.0019  Score=42.33  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHcCceeeecCCC---------------------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFY---------------------GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~---------------------~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.++++...                     .+.+|+.+....|++|+++++++|+++++
T Consensus       301 ~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~  371 (382)
T 4hvk_A          301 GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            456788899999998864210                     47899999999999999999999999875

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=96.95  E-value=0.0013  Score=43.35  Aligned_cols=64  Identities=14%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC---C------------------CCCEEEEecCcccCHHHHHH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG---F------------------YGNVFRIAPPLCFTKEDANY   70 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g---~------------------~~~~i~~~PPL~i~~~eid~   70 (82)
                      .+.+..+.+.. .     ....+.+.+.++|+++.+..   .                  ..+.+|+.+....|++|+++
T Consensus       291 ~~~~~~~~~~~-~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~  364 (384)
T 1eg5_A          291 LPNTLSVSFPN-I-----RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY  364 (384)
T ss_dssp             CTTEEEEECTT-C-----CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH
T ss_pred             CCCEEEEEeCC-C-----CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHH
Confidence            35566666531 1     24567888889999998731   1                  13689999999999999999


Q ss_pred             HHHHHHHhHhc
Q 042283           71 LVDVMDCSMTK   81 (82)
Q Consensus        71 ~~~~l~~~l~~   81 (82)
                      ++++|++++++
T Consensus       365 ~~~~l~~~~~~  375 (384)
T 1eg5_A          365 FLKKIEEILSF  375 (384)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998853

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=96.94  E-value=0.0017  Score=43.74  Aligned_cols=62  Identities=11%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++....     ....+.+.++ ++|+++.++..    ..+.+|+.++.  +++++++++++|.+++++
T Consensus       336 g~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          336 GIYVWLETPPGY-----DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             SSEEEEECCTTC-----CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             ceEEEEeCCCCC-----CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            677778874221     2446777777 57999987532    25799999996  789999999999998864

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=96.94  E-value=0.003  Score=42.83  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=48.9

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...|++..+++.....    ....+.+.+.++|+++.++..       ..+.+|+.+.. .+++++++++++|.+++++
T Consensus       350 p~~g~~~~~~~~~~~~----~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          350 PAAGMFLWIKVKGIND----VKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             CSBSSEEEEEETTCSC----CHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCCC----HHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            3568888888853211    112256778899999987532       14789999884 5999999999999998864

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=96.92  E-value=0.0015  Score=43.09  Aligned_cols=69  Identities=10%  Similarity=0.109  Sum_probs=46.4

Q ss_pred             eeeecccc-eEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            6 IGDARGWG-FMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         6 v~~vRg~G-lm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +.-++..| ++..+++.....     ...+...++++ |+++.++..    ..+.+|++++.  +++++++++++|++++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~--~~e~i~~~l~~l~~~l  373 (377)
T 3fdb_A          301 AKITPMQATYLMWIDFRDTTI-----EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT--SREVLEEAIDRMAKAV  373 (377)
T ss_dssp             CEECCCSBCSEEEEECTTSCC-----CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred             ceEecCCeeEEEEEECcccCC-----CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC--CHHHHHHHHHHHHHHH
Confidence            33334444 444577743211     12456666665 999987532    25899999884  8999999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       374 ~~  375 (377)
T 3fdb_A          374 SH  375 (377)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=96.90  E-value=0.0028  Score=42.11  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC--CCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF--YGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~--~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.+..+.+....     ....+.+.+.++ |+.+.++..  ..+.+|++| +++.+++++++++++|+++++
T Consensus       327 ~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          327 PTLTTVCIPDGV-----DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             SSEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEcCCCC-----CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence            345566652211     245688888887 999987531  368999995 788899999999999999874

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=96.90  E-value=0.0024  Score=42.11  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHcCceeeecCC-------------------------CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           31 TLDVMDKMKQMGVLIGKGGF-------------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~-------------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      ...+.+.+.++|+.+++...                         ..+.+|+.+...+|++|+++++++|+++++++
T Consensus       295 ~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          295 RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            45788889999998876420                         01789999999999999999999999998753

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=96.90  E-value=0.0042  Score=41.77  Aligned_cols=65  Identities=12%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++.....  ......+.+.+++ +|+++.++..    ..+.+|++++.  ++++++++++++.+++++
T Consensus       328 g~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~  397 (412)
T 2x5d_A          328 SMYVWAKIPEPYA--HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRA  397 (412)
T ss_dssp             SSEEEEECCTTTG--GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEcCCccC--CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            7777788742110  0024567777765 7999987532    25799999997  899999999999998853

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.83  E-value=0.0026  Score=41.85  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---------------------CCCEEEEecCcccCHHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---------------------YGNVFRIAPPLCFTKEDANYL   71 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---------------------~~~~i~~~PPL~i~~~eid~~   71 (82)
                      |.+..+.+. +.     ....+.+.+.++|+.+.+...                     ..+.+|+.+....|++|++++
T Consensus       289 ~~~~~~~~~-~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~  362 (382)
T 4eb5_A          289 PNNVNVRFS-YI-----EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRL  362 (382)
T ss_dssp             TTEEEEEET-TS-----CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHH
T ss_pred             CCEEEEEeC-Cc-----CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHH
Confidence            556666663 11     245678888899999876421                     147999999999999999999


Q ss_pred             HHHHHHhHh
Q 042283           72 VDVMDCSMT   80 (82)
Q Consensus        72 ~~~l~~~l~   80 (82)
                      +++|+++++
T Consensus       363 ~~~l~~~~~  371 (382)
T 4eb5_A          363 LEVLPGVIE  371 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=96.79  E-value=0.0032  Score=41.61  Aligned_cols=59  Identities=12%  Similarity=0.004  Sum_probs=45.2

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      |++..+++..       ....+.+.+. ++|+++.++..    ..+.+|+.++  .+++++++++++|+++++
T Consensus       306 ~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          306 AYYVFPNIGE-------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             TTEECCBCSS-------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEecCC-------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            6666666632       1456778887 78999987531    2578999999  599999999999999885

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=96.74  E-value=0.0034  Score=41.83  Aligned_cols=60  Identities=12%  Similarity=0.088  Sum_probs=45.2

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----------CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----------FYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +.+..+++.. .     ....+.+.+.++|++++++.           ...+.+|+.++...|++|+++++++|+++
T Consensus       335 ~~~~~~~~~~-~-----~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          335 IPVVSFAVHK-V-----PADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             CSEEEEEETT-B-----CHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             CCEEEEEECC-c-----CHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence            4467776631 1     24567888889999998752           12478999999999999999999998753

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=96.72  E-value=0.0044  Score=42.93  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.+.....   ..+.+||+|+...|++|+++++++|++++++
T Consensus       387 ~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          387 ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            56788889999998632211   2578999999999999999999999988753

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=96.71  E-value=0.006  Score=41.43  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHc-CceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~-Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+++. ..     ....+.+.++++ ||++.++..    ..+.+||+  +..+++++++++++|++++++
T Consensus       374 ~~~~~~~~~-~~-----~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          374 APYIWVGFP-GK-----PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             SSEEEEECT-TS-----CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC-
T ss_pred             eeEEEEECC-CC-----CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            667767664 21     245677777765 999987531    25899999  777999999999999999864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=96.69  E-value=0.0092  Score=39.30  Aligned_cols=63  Identities=16%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..|.++.+++...      ....+.+.+.++|+++++++.  ..+.+|++..   +++|+|++++++++..+
T Consensus       289 ~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          289 IPSQGNYLFATPPDR------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             CCCSSSEEEEECTTC------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             cCCCccEEEEECCCC------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            456677777765321      245778889999999987642  3478999966   99999999999998764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=96.60  E-value=0.006  Score=40.47  Aligned_cols=63  Identities=14%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++....    .....+.+.+. ++|+++.++..    ..+.+|+.++.  +++++++++++|.+++++
T Consensus       318 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          318 AFYIFPRIRDTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             TTEECCBCGGGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            666666663211    12456888887 89999987532    25789999885  999999999999999864

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=96.59  E-value=0.0092  Score=39.49  Aligned_cols=59  Identities=14%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+.|.++.+++.        ....+.+.+.++|+++++++.   ..+.+|++++   +++|+++++++|++.
T Consensus       293 ~~~~~~~~~~~~~--------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          293 FDSETNYILARFK--------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE  354 (356)
T ss_dssp             CCCSSSEEEEEET--------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred             CCCCCeEEEEECC--------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            3556788877774        134678888899999998542   1368999987   799999999999764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.57  E-value=0.0071  Score=40.37  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=46.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++.  .     ....+.+.++ ++|+++.++..  .++.+|++++.  ++++++++++.+.+++++
T Consensus       326 ~~~~~~~~~--~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          326 AFYLFFKVR--G-----DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT--SIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             SSEEEEECS--S-----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS--CHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEeCC--C-----CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence            666666663  1     2456788887 89999987532  14699999994  999999999999999875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=96.57  E-value=0.0081  Score=39.88  Aligned_cols=59  Identities=12%  Similarity=0.101  Sum_probs=44.6

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |++..+++...      ....+.+.++ ++|+++.++..          ..+.+|+++..  +++++++++++|.+++
T Consensus       326 ~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          326 SFYIWLKVPDG------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             SSEEEEECTTS------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred             eEEEEEECCCC------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence            78888887531      2446677775 57999987431          35799999876  9999999999999876

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=96.53  E-value=0.0054  Score=40.65  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++..+++...        . +...+.++|+++.++..      ..+.+|+.++.  +++++++++++|++++++
T Consensus       307 ~~~~~~~~~~~--------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          307 TYFLMAELPGW--------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS  370 (381)
T ss_dssp             SSEEEEECTTC--------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred             ceEEEEecChH--------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence            67777776321        1 56677899999987531      25799999987  999999999999998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=96.51  E-value=0.0087  Score=40.60  Aligned_cols=75  Identities=9%  Similarity=0.045  Sum_probs=49.2

Q ss_pred             Cceeeec-ccceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            4 GTIGDAR-GWGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         4 ~~v~~vR-g~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |.+.-++ ..|++..+++....-........+++.++ ++||++.++..  ..+.+|+.  +..+++++++++++|.+++
T Consensus       344 ~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis--~~~~~e~i~~~l~~l~~~l  421 (427)
T 3dyd_A          344 PGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVV--ITVPEVMMLEACSRIQEFC  421 (427)
T ss_dssp             TTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--SCSCHHHHHHHHHHHHHHH
T ss_pred             CCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEE--ECCCHHHHHHHHHHHHHHH
Confidence            4444333 34666666774211000012456677775 89999987531  36899999  5589999999999999988


Q ss_pred             h
Q 042283           80 T   80 (82)
Q Consensus        80 ~   80 (82)
                      +
T Consensus       422 ~  422 (427)
T 3dyd_A          422 E  422 (427)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=96.50  E-value=0.009  Score=38.90  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=46.5

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +.+..+.+..       ....+.+.+.++|+.+.++.  ..++.+|+.+....+++++++++++|++.+
T Consensus       300 ~~~~~~~~~~-------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          300 MTTIVANTTM-------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             SSEEEEEESS-------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CceEEEecCC-------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4455555532       25578889999999998631  246899999999999999999999998865

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=96.48  E-value=0.0042  Score=43.28  Aligned_cols=49  Identities=12%  Similarity=0.097  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecC-cccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPP-LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+++... ..++.+|+++. +..+++++++++++|+++++
T Consensus       418 ~~~l~~~L~~~Gi~v~g~-~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~  467 (514)
T 3mad_A          418 IYQVMEEMAGRGWRLNGL-HRPPAFHVALTLRHTEPGVVDRFLADLQDAVA  467 (514)
T ss_dssp             HHHHHHHHHTTTCBCEEE-TTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEeccC-CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            567888999999988433 34788999987 77888999999999999875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=96.45  E-value=0.0054  Score=41.23  Aligned_cols=47  Identities=17%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++.+.+.++|+++.++   ++.+||+-. .++++++++++++|++++++
T Consensus       368 ~~~~~~~l~~~gi~v~~g---~~~iRis~~-~~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          368 ANAICEELKKEHIYVIAL---ANGIRIAAC-GIPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             HHHHHHHHHHTTEECEEC---SSEEEEEGG-GSCHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEecC---CCCeEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence            456778889999999986   578999933 47999999999999999863

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=96.45  E-value=0.0068  Score=40.20  Aligned_cols=49  Identities=10%  Similarity=0.108  Sum_probs=39.3

Q ss_pred             HHHHHHHHHH-cCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQ-MGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~-~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.+ +|+++.++..  ..+.+|++++  .+++++++++++|.+++++
T Consensus       335 ~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          335 SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            4567888876 7999987532  2578999987  5999999999999998753

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0038  Score=43.15  Aligned_cols=49  Identities=8%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..+.+.+.++|+.+.... ..+.+|+.++ .+|+++++++++.|+++++
T Consensus       387 ~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~  435 (497)
T 3mc6_A          387 NIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSAHVVDEICDILRTTVQ  435 (497)
T ss_dssp             THHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTTCTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCHHHHHHHHHHHHHHHH
Confidence            35678999999999887653 4567899999 8899999999999999875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=95.39  E-value=0.00054  Score=45.85  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             CceeeecccceEEE-EEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283            4 GTIGDARGWGFMLG-VEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus         4 ~~v~~vRg~Glm~g-ie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |.+..++..|.|.. +++....    .....+.+.++ ++|+++.++..    ..+.+|+.  +..+++++++++++|++
T Consensus       315 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~~  388 (392)
T 3b1d_A          315 PRLKVMKPQGTYLIWLDFSDYG----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIVC  388 (392)
Confidence            44455566666665 6764311    12346778886 78999987532    24679988  44578999999999999


Q ss_pred             hHh
Q 042283           78 SMT   80 (82)
Q Consensus        78 ~l~   80 (82)
                      +++
T Consensus       389 ~l~  391 (392)
T 3b1d_A          389 CLP  391 (392)
Confidence            875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=96.27  E-value=0.0053  Score=40.43  Aligned_cols=62  Identities=18%  Similarity=0.111  Sum_probs=46.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---CCCEEEEe-cC---cccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---YGNVFRIA-PP---LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~-PP---L~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|.+..+++..        ...+.+.+.++|+.+.++..   ..+.+|++ .+   +..|++|+++++++|++++++
T Consensus       315 ~~~~~~~~~~~--------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          315 AHGLTAVYVAD--------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             CSSCEEEECSC--------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCceEEEecCC--------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            45666666621        45678888899999987431   25789998 33   468999999999999998764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=96.26  E-value=0.0063  Score=40.53  Aligned_cols=67  Identities=12%  Similarity=0.113  Sum_probs=48.4

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----------------------CCCEEEEecCcccCHHH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----------------------YGNVFRIAPPLCFTKED   67 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----------------------~~~~i~~~PPL~i~~~e   67 (82)
                      +..+.+..+.+....+   .....+.+.+.++|+.+++...                      ..+++++.+...+|++|
T Consensus       302 ~~~~~~~~i~~~~~~~---~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed  378 (391)
T 3dr4_A          302 RHVFWMYTVRLGEGLS---TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEAD  378 (391)
T ss_dssp             CCCCSSEEEEECSSCS---SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred             cceeEEEEEEECCccc---hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHH
Confidence            3445556676643111   1356788999999999886420                      13689999999999999


Q ss_pred             HHHHHHHHHHhH
Q 042283           68 ANYLVDVMDCSM   79 (82)
Q Consensus        68 id~~~~~l~~~l   79 (82)
                      +|.++++|++++
T Consensus       379 i~~~~~~l~~~l  390 (391)
T 3dr4_A          379 IDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=96.22  E-value=0.02  Score=39.68  Aligned_cols=69  Identities=7%  Similarity=0.001  Sum_probs=48.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +.+..+.+.............+.+.+.++|+++.+...  ....+|+++ +...|++|++++++.|++++++
T Consensus       424 ~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          424 LSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            34777777532211123445677888999998764211  235899987 8899999999999999998753

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=96.21  E-value=0.015  Score=39.62  Aligned_cols=49  Identities=14%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCcee--eecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLI--GKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~--~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|+.+  .+.. ...+.+|+++....|++|+++++++|++++
T Consensus       386 ~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          386 PEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            567888899999988  3321 126799999999999999999999998865

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=96.05  E-value=0.011  Score=39.59  Aligned_cols=65  Identities=6%  Similarity=0.058  Sum_probs=45.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC---------------CCCEEEEecCcccCHHHHHHHHHHH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF---------------YGNVFRIAPPLCFTKEDANYLVDVM   75 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~---------------~~~~i~~~PPL~i~~~eid~~~~~l   75 (82)
                      .|++..+++.....   .....+.+.+. ++|+++.++..               ..+.+||++..  +++++++++++|
T Consensus       315 ~g~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~~~~l  389 (411)
T 2o0r_A          315 GTYFLCADPRPLGY---DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK--RDDTLDEAIRRL  389 (411)
T ss_dssp             BSSEEEEECGGGTC---CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS--CHHHHHHHHHHH
T ss_pred             eeEEEEEecCCCCC---CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC--CHHHHHHHHHHH
Confidence            47788888853110   02446777776 68999987521               24679999863  899999999999


Q ss_pred             HHhHhc
Q 042283           76 DCSMTK   81 (82)
Q Consensus        76 ~~~l~~   81 (82)
                      .+++++
T Consensus       390 ~~~~~~  395 (411)
T 2o0r_A          390 SVLAER  395 (411)
T ss_dssp             GGGGC-
T ss_pred             HHHHhc
Confidence            988753

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=96.04  E-value=0.0065  Score=40.73  Aligned_cols=63  Identities=14%  Similarity=0.030  Sum_probs=41.8

Q ss_pred             cceEEEEE-eeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVE-FVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie-~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|++..++ +....     ....+...+++ +|+++.++..    ..+.+|++  +..+++++++++++|++++++
T Consensus       324 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          324 HAPYLWVKPTQANI-----SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPAL  392 (400)
T ss_dssp             SSSEEEEECCCTTC-----CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC----
T ss_pred             CceEEEEeccCCCC-----CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHh
Confidence            37777787 53211     12246666664 5999987532    25789999  788999999999999988864

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=96.03  E-value=0.034  Score=37.38  Aligned_cols=62  Identities=13%  Similarity=0.032  Sum_probs=45.0

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec--C--------------------------CCCCEEEEecCc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG--G--------------------------FYGNVFRIAPPL   61 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~--g--------------------------~~~~~i~~~PPL   61 (82)
                      ++.|.|+++++..       ....+.+.+.+.|+..+..  |                          ...+.||+++++
T Consensus       308 ~~~~~~~~~~l~~-------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~  380 (398)
T 1gc0_A          308 SQPGGMIAFELKG-------GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL  380 (398)
T ss_dssp             -CCTTEEEEEETT-------HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS
T ss_pred             CCCceEEEEEECC-------CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc
Confidence            5789999998842       1224555666778776541  1                          114899999999


Q ss_pred             ccCHHHHHHHHHHHHHh
Q 042283           62 CFTKEDANYLVDVMDCS   78 (82)
Q Consensus        62 ~i~~~eid~~~~~l~~~   78 (82)
                      ..++++++.+.++|+++
T Consensus       381 ~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          381 EDIDDLLADVQQALKAS  397 (398)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=96.02  E-value=0.019  Score=38.08  Aligned_cols=60  Identities=10%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      |+++.+++.....   .....+.+.+. ++|+++.++..      ..+.+|++++.  +++++++++++|++
T Consensus       319 g~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~  385 (386)
T 1u08_A          319 TYFLLVDYSAVST---LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK--KESTLLAAAERLRQ  385 (386)
T ss_dssp             SSEEEEECTTTCC---SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             eEEEEEecCCCCC---CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence            7788888743200   02446777776 68999987531      35789999983  89999999998864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=95.99  E-value=0.043  Score=36.13  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=46.5

Q ss_pred             Cceeeeccc-ceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283            4 GTIGDARGW-GFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus         4 ~~v~~vRg~-Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |.+..++.. |.+.-+.+..+.     ....+...+ .++|+++.++..  ..+.+|+.  +..+++++++++++|++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l  368 (375)
T 3op7_A          296 PLVSYIRPAVVSTSFVKIAVDM-----PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFL  368 (375)
T ss_dssp             TTEEECCCSSSSCEEEEECCSS-----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHH
T ss_pred             CCceEecCCCeEEEeEEcCCCC-----CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence            444444444 344444453221     245566666 588999987642  25889998  4566799999999999998


Q ss_pred             hc
Q 042283           80 TK   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       369 ~~  370 (375)
T 3op7_A          369 RR  370 (375)
T ss_dssp             GG
T ss_pred             HH
Confidence            63

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=95.94  E-value=0.021  Score=37.51  Aligned_cols=51  Identities=18%  Similarity=0.046  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+.+.+.++|+.+.+.....+.+|++.-...+++|++++++.|++.++
T Consensus       309 ~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          309 LEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            356788888999998765422346799998888899999999999998775

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=95.93  E-value=0.0049  Score=41.41  Aligned_cols=65  Identities=11%  Similarity=0.075  Sum_probs=44.5

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-------------------------CCCCEEEEecCcccC
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-------------------------FYGNVFRIAPPLCFT   64 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-------------------------~~~~~i~~~PPL~i~   64 (82)
                      ++.|.|..+++...    ...+..+.+.+...|+.+.+++                         ...+.+||++++..+
T Consensus       307 ~~~g~~~~~~~~~~----~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~  382 (398)
T 2rfv_A          307 SLPGGIISFEIAGG----LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDP  382 (398)
T ss_dssp             SSCCSEEEEEETTH----HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCH
T ss_pred             CCCceEEEEEEcCC----HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCH
Confidence            56899999988531    1233445554444555544321                         125899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 042283           65 KEDANYLVDVMDCS   78 (82)
Q Consensus        65 ~~eid~~~~~l~~~   78 (82)
                      +++++.+.++++++
T Consensus       383 ~~~i~~l~~al~~~  396 (398)
T 2rfv_A          383 EDIINDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=95.93  E-value=0.026  Score=37.73  Aligned_cols=49  Identities=6%  Similarity=0.006  Sum_probs=37.5

Q ss_pred             HHHHHHHHH-HcCceeeecCC---------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF---------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~---------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++...++ ++||++.++..         ..+.+||+...  +++++++++++|++++++
T Consensus       363 ~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          363 DRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence            445666654 57999987432         25899998554  999999999999999864

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=95.88  E-value=0.018  Score=37.72  Aligned_cols=66  Identities=6%  Similarity=0.031  Sum_probs=47.1

Q ss_pred             ccceEEEEEeeeCCCCchH-HHHHHHHHHHHcCceeeec-CC----------------------CCCEEEEecCcccCHH
Q 042283           11 GWGFMLGVEFVTDSQLRKA-ETLDVMDKMKQMGVLIGKG-GF----------------------YGNVFRIAPPLCFTKE   66 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~-~~~~v~~~~~~~Gll~~~~-g~----------------------~~~~i~~~PPL~i~~~   66 (82)
                      +.+.+..+.+....    . ....+.+.+.++|+.++.. .+                      ..+.+|+.++...|++
T Consensus       281 ~~~~~~~~~~~~~~----~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~  356 (375)
T 2fnu_A          281 SSNHLYPILMHQKF----FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLE  356 (375)
T ss_dssp             CCCSCEEEEECGGG----GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred             cceEEEEEEeCccc----cchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHH
Confidence            34455566664210    1 3567888889999988721 00                      0168999999999999


Q ss_pred             HHHHHHHHHHHhHh
Q 042283           67 DANYLVDVMDCSMT   80 (82)
Q Consensus        67 eid~~~~~l~~~l~   80 (82)
                      |+++++++|+++++
T Consensus       357 ~i~~~~~~l~~~~~  370 (375)
T 2fnu_A          357 SVQNIAHSVLKTFE  370 (375)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=95.81  E-value=0.0051  Score=42.41  Aligned_cols=47  Identities=6%  Similarity=0.018  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.++|+.+..++  .+.+|+++++..|++++ +++++|+++++
T Consensus       305 ~~~l~~~L~~~GI~v~~~g--~~~iRi~~~~~~t~e~i-~l~~aL~~~~~  351 (446)
T 2x3l_A          305 GHDIQNWFMNAHIYLELAD--DYQALAILPLWHHDDTY-LFDSLLRKIED  351 (446)
T ss_dssp             HHHHHHHHHHTTEEESEEC--SSCEEEECCCCCTTCCC-CHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEEecC--CCEEEEEeecCCCHHHH-HHHHHHHHHHH
Confidence            4578888999999987443  47899999999999999 99999998875

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=95.78  E-value=0.0063  Score=41.14  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-----------------Ccc---cCHHHH
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-----------------PLC---FTKEDA   68 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-----------------PL~---i~~~ei   68 (82)
                      .||.|.|++|++..+    ...+..+...+...|+.+..++  ..++...|                 +++   ++.++.
T Consensus       307 ~~g~g~~~~~~l~~~----~~~~~~~~~~l~~~~~~~s~G~--~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~  380 (392)
T 3qhx_A          307 MRGFGGMVSVRMRAG----RTAAEQLCAKTNIFILAESLGS--VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDV  380 (392)
T ss_dssp             CSSCCSEEEEEETTC----HHHHHHHHHHCSSSEECSCCCC--SSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCH
T ss_pred             CCCCceEEEEEeCCc----HHHHHHHHHhCCCceECCCCCC--CCceeeCcccccccccCHHHcCCCCCeEEEEeccCCH
Confidence            389999999999642    1345667766666665544332  22232222                 222   667788


Q ss_pred             HHHHHHHHHhHh
Q 042283           69 NYLVDVMDCSMT   80 (82)
Q Consensus        69 d~~~~~l~~~l~   80 (82)
                      +++++.++++|+
T Consensus       381 ~~~i~~l~~al~  392 (392)
T 3qhx_A          381 ADLLDDLKQALG  392 (392)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            888888888763

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=95.70  E-value=0.03  Score=37.26  Aligned_cols=51  Identities=14%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHcCceeeecC--------CCCCEEEEecCcc----cCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLC----FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~----i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+++++..        ...+.+|+.++..    ++++|+++++++|++++++
T Consensus       326 ~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          326 GKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             HHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            4567778889999988542        1236799988855    6799999999999999864

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=95.67  E-value=0.0058  Score=42.62  Aligned_cols=64  Identities=19%  Similarity=0.318  Sum_probs=45.7

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-------------------------CCCCEEEEecCccc
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-------------------------FYGNVFRIAPPLCF   63 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-------------------------~~~~~i~~~PPL~i   63 (82)
                      .+|.|.|+.+++. +    .+....+.+.+...|+.++.++                         ...+.+|+++++  
T Consensus       373 ~~g~g~~~~~~l~-~----~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--  445 (464)
T 1ibj_A          373 AKGAGSVFSFITG-S----VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--  445 (464)
T ss_dssp             CSCCCSEEEEECS-C----HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--
T ss_pred             CCCCceEEEEEEC-C----HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--
Confidence            4577889999983 1    1234457777666676655432                         124689999998  


Q ss_pred             CHHHHHHHHHHHHHhHhc
Q 042283           64 TKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        64 ~~~eid~~~~~l~~~l~~   81 (82)
                        +|++++++.|++++++
T Consensus       446 --edi~~li~~L~~al~~  461 (464)
T 1ibj_A          446 --EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             --SCHHHHHHHHHHHHHS
T ss_pred             --CCHHHHHHHHHHHHhh
Confidence              8999999999999864

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=95.54  E-value=0.033  Score=36.29  Aligned_cols=56  Identities=13%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..|.++.+++..      .....+.+.+.++|+++.+.   .+.+|+++.   +++|+++++++|+++
T Consensus       279 ~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~~---~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          279 SRGNFVFVFMEK------EEKERLLEHLRTKNVAVRSF---REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             CCSSEEEEECCT------HHHHHHHHHHHHHTEEEEEE---TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEECCC------CCHHHHHHHHHHCCEEEEEC---CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            346676676632      13456788888999999883   579999974   578899999998765

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=95.54  E-value=0.036  Score=37.54  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec--C--------------------------CCCCEEEEecC
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG--G--------------------------FYGNVFRIAPP   60 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~--g--------------------------~~~~~i~~~PP   60 (82)
                      .||.|.|+++++..       ....+.+.+.+.|++....  |                          ...+.+|+++.
T Consensus       305 ~~~~g~~~~~~~~~-------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g  377 (404)
T 1e5e_A          305 MRMYGSMITFILKS-------GFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG  377 (404)
T ss_dssp             CSSCCSEEEEEETT-------HHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred             CCCCceEEEEEeCC-------CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC
Confidence            46789999998742       1223445566778865542  1                          11478999999


Q ss_pred             cccCHHHHHHHHHHHHHhHh
Q 042283           61 LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        61 L~i~~~eid~~~~~l~~~l~   80 (82)
                      +    ++++++++.|+++++
T Consensus       378 ~----e~~~~li~~l~~al~  393 (404)
T 1e5e_A          378 I----EDADELIADFKQGLD  393 (404)
T ss_dssp             S----SCHHHHHHHHHHHHH
T ss_pred             C----CCHHHHHHHHHHHHH
Confidence            9    889999998888775

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.034  Score=37.93  Aligned_cols=66  Identities=14%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             cccceEEEEEeeeCCCCc----------hHHHHHHHHHHH-HcCceeeecCCC---------CCEEEEecCcccCHHHHH
Q 042283           10 RGWGFMLGVEFVTDSQLR----------KAETLDVMDKMK-QMGVLIGKGGFY---------GNVFRIAPPLCFTKEDAN   69 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~----------~~~~~~v~~~~~-~~Gll~~~~g~~---------~~~i~~~PPL~i~~~eid   69 (82)
                      ..-|+++.+++.......          ......+.+.+. ++||++.++...         .+.+||+++.  ++++++
T Consensus       357 ~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~  434 (447)
T 3b46_A          357 PEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLE  434 (447)
T ss_dssp             CSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHH
T ss_pred             CCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHH
Confidence            345888888884310000          013456777776 589999875311         5899999984  899999


Q ss_pred             HHHHHHHH
Q 042283           70 YLVDVMDC   77 (82)
Q Consensus        70 ~~~~~l~~   77 (82)
                      +++++|.+
T Consensus       435 ~~~~~l~~  442 (447)
T 3b46_A          435 NAVERLKL  442 (447)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHH
Confidence            99999977

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=95.50  E-value=0.045  Score=36.53  Aligned_cols=29  Identities=17%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+|+.+++..|++|+++++++|+++++
T Consensus       369 ~~~iRi~~~~~~t~e~i~~~~~~l~~~~~  397 (423)
T 3lvm_A          369 HSSIRFSLGRFTTEEEIDYTIELVRKSIG  397 (423)
T ss_dssp             HTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            38899999999999999999999999875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=95.49  E-value=0.0041  Score=41.29  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=26.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----------------CC----CCEEEEec-CcccCHHHHHH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----------------FY----GNVFRIAP-PLCFTKEDANY   70 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----------------~~----~~~i~~~P-PL~i~~~eid~   70 (82)
                      +.++.+.+.. .     ....+.+.+. +|+.+++..                 ..    .+.+||.+ +...|++|+++
T Consensus       316 ~~~~~~~~~~-~-----~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~  388 (400)
T 3vax_A          316 PHILNLSFED-V-----DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEE  388 (400)
T ss_dssp             TTEEEEECTT-C-----CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------
T ss_pred             CCEEEEEeCC-C-----CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHH
Confidence            4566665532 1     2456777788 888776521                 00    38999999 99999999999


Q ss_pred             HHHHHHHhHhc
Q 042283           71 LVDVMDCSMTK   81 (82)
Q Consensus        71 ~~~~l~~~l~~   81 (82)
                      ++++|++++++
T Consensus       389 ~~~~l~~~~~~  399 (400)
T 3vax_A          389 LARGVAKLKPS  399 (400)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhcc
Confidence            99999998764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=95.47  E-value=0.035  Score=37.93  Aligned_cols=68  Identities=18%  Similarity=0.053  Sum_probs=47.5

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +...+|.+..-. ...+....+...+.++|+.+++.-.....+|++.-...|++|+|.+++.|++.+++
T Consensus       307 ~~ivsf~~~~~~-~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          307 KMNIPFRIGNAK-GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             SSEEEEEESSTT-CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCC-CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            344666654211 00123346777788999988764333467999999999999999999999998753

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=95.35  E-value=0.0041  Score=40.82  Aligned_cols=62  Identities=11%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec-------CCCCCEEE-EecCcc-cCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG-------GFYGNVFR-IAPPLC-FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~-------g~~~~~i~-~~PPL~-i~~~eid~~~~~l~~~l~~   81 (82)
                      .|.+..+++.        ....+.+.+.++|+.+.+.       +...+.+| +.++.. .|++|+++++++|++++++
T Consensus       299 ~~~~~~~~~~--------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          299 NHDLMFFHAE--------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             CSSEEEEECH--------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEECC--------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            4667777663        2456778888899988661       11257899 999988 9999999999999998863

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=95.25  E-value=0.049  Score=37.24  Aligned_cols=49  Identities=16%  Similarity=-0.018  Sum_probs=39.3

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+...+.++|+.++..-.....+|++.-...|++|+|.+++.|++..+
T Consensus       335 ~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~  383 (386)
T 3qm2_A          335 KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER  383 (386)
T ss_dssp             HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            4677778889998875422235699999999999999999999998765

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=95.16  E-value=0.034  Score=37.01  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.+.++...  .+.+|++-.  .++++++++++++.+++++
T Consensus       334 ~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          334 EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLGR  384 (385)
T ss_dssp             HHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC--
T ss_pred             HHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            456788888999999875322  478999955  7999999999999988754

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=94.94  E-value=0.069  Score=36.18  Aligned_cols=49  Identities=12%  Similarity=0.019  Sum_probs=39.5

Q ss_pred             HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..+...+.++|+.++..-.....+|+++-...|++|+|.+++.|++..+
T Consensus       310 ~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~  358 (361)
T 3m5u_A          310 PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQG  358 (361)
T ss_dssp             HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            3577788889998865422235699999999999999999999998765

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=94.85  E-value=0.062  Score=37.48  Aligned_cols=49  Identities=20%  Similarity=0.323  Sum_probs=38.2

Q ss_pred             HHHHHHHHcCceeeec---CCCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283           33 DVMDKMKQMGVLIGKG---GFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~---g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.+.+.+.|.+....   ....+.+|+++ +...|++|++++++.|++++++
T Consensus       462 ~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          462 VLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             HHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            4677888899765321   11246899999 8999999999999999998764

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=94.73  E-value=0.013  Score=40.13  Aligned_cols=72  Identities=18%  Similarity=0.334  Sum_probs=42.9

Q ss_pred             eeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecC-----------------------ccc
Q 042283            7 GDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP-----------------------LCF   63 (82)
Q Consensus         7 ~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PP-----------------------L~i   63 (82)
                      ++.||.|.|++|++........+.+.++++.+...++.+..++  ..++...|+                       |.+
T Consensus       320 ~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~--~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv  397 (414)
T 3ndn_A          320 RQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGD--AKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISV  397 (414)
T ss_dssp             HHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSC--SSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEEC
T ss_pred             HhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCC--CCceeeCccccccccCCHHHHHhcCCCCCeEEEEe
Confidence            3568999999999953200001345667777765554443322  233333332                       235


Q ss_pred             CHHHHHHHHHHHHHhHh
Q 042283           64 TKEDANYLVDVMDCSMT   80 (82)
Q Consensus        64 ~~~eid~~~~~l~~~l~   80 (82)
                      ..|+.+.+++.|+++|+
T Consensus       398 G~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          398 GLEDTDDLIADIDRALS  414 (414)
T ss_dssp             CSSCHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHhhC
Confidence            66788999999998874

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=94.73  E-value=0.078  Score=39.24  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+..+.+.+.++|+++..++  .+.++++..+-.|+++++.++++|.+..+
T Consensus       516 ~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~  564 (730)
T 1c4k_A          516 PATIVANYLRDHGIIPEKSD--LNSILFLMTPAETPAKMNNLITQLLQLQR  564 (730)
T ss_dssp             CHHHHHHHHHHTTCCCSEEC--SSEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcEEEECC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            45678888999999998764  67899999999999999999999987653

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=94.72  E-value=0.093  Score=33.86  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=37.0

Q ss_pred             HHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+.+.++|+++.++..  ..+.+|++..   +++|+++++++|++.+++
T Consensus       288 ~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~  336 (337)
T 3p1t_A          288 ERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSDH  336 (337)
T ss_dssp             HHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhhc
Confidence            3566778899999988542  2579999965   899999999999987653

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=94.70  E-value=0.067  Score=35.93  Aligned_cols=60  Identities=8%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC---CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY---GNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~---~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .|++.-+++.+.        ..+...+.++||.+.++...   .+.+||+..  .+++++++++++|.+++++
T Consensus       324 ~g~~~~~~~~~~--------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          324 YPAFAWLGTKEE--------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             CCSEEEEEESSS--------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred             cceEEEecCCcH--------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            355666666421        13556677899999885322   568999977  3899999999999988764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=94.67  E-value=0.12  Score=34.72  Aligned_cols=59  Identities=14%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .|.++-+++. +.     ....+...+++ +||++.++..    ..+.+|++  +..+++++++++++|++-
T Consensus       361 ~~~~~~~~~~-~~-----~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~  424 (432)
T 3ei9_A          361 NAPYVWVHFP-NQ-----SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQL  424 (432)
T ss_dssp             SSSEEEEECT-TS-----CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECC-CC-----CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence            4666666664 11     24456666665 5999987421    25789999  678999999999999875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=94.62  E-value=0.095  Score=35.18  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=26.5

Q ss_pred             CEEEEecCccc-CHHHHHHHHHHHHHhHhc
Q 042283           53 NVFRIAPPLCF-TKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        53 ~~i~~~PPL~i-~~~eid~~~~~l~~~l~~   81 (82)
                      ++||+.+...+ |++|++.++++|++++++
T Consensus       384 ~~lrl~~~~~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          384 QSIVIHHAILLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             CEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence            48999999999 999999999999998754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=94.61  E-value=0.089  Score=36.49  Aligned_cols=51  Identities=18%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCcee-eecCCC--CCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLI-GKGGFY--GNVFRIAPP-LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~-~~~g~~--~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|.+. .+....  .+.+|+++. ...|++|++++++.|++++++
T Consensus       447 ~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  501 (504)
T 2okj_A          447 APKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD  501 (504)
T ss_dssp             HHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456888899999643 322111  258999995 889999999999999988754

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=94.43  E-value=0.17  Score=33.54  Aligned_cols=66  Identities=6%  Similarity=0.056  Sum_probs=43.7

Q ss_pred             cccceEEEEEeeeCCCC-c-----hHHHHHHHHHH-HHcCceeeecCCC---------CCEEEEecCcccCHHHHHHHHH
Q 042283           10 RGWGFMLGVEFVTDSQL-R-----KAETLDVMDKM-KQMGVLIGKGGFY---------GNVFRIAPPLCFTKEDANYLVD   73 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~-~-----~~~~~~v~~~~-~~~Gll~~~~g~~---------~~~i~~~PPL~i~~~eid~~~~   73 (82)
                      ...|++..+++...... .     ......++..+ .++||++.++...         .+.+||+  +..++++++++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l~  404 (410)
T 3e2y_A          327 PDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAEE  404 (410)
T ss_dssp             CSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHHH
T ss_pred             CCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHHH
Confidence            45678888887542110 0     01123555544 5789999875422         4789999  5669999999999


Q ss_pred             HHHH
Q 042283           74 VMDC   77 (82)
Q Consensus        74 ~l~~   77 (82)
                      +|++
T Consensus       405 ~l~~  408 (410)
T 3e2y_A          405 IFRA  408 (410)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9875

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=94.24  E-value=0.011  Score=40.23  Aligned_cols=63  Identities=14%  Similarity=0.184  Sum_probs=38.6

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec-------------------------CCCCCEEEEecCcccC
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG-------------------------GFYGNVFRIAPPLCFT   64 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~-------------------------g~~~~~i~~~PPL~i~   64 (82)
                      ||.|.|++|++..+    .+.+..+...+...++.++.+                         |...+.||++    ++
T Consensus       334 ~~~g~ivsf~l~~~----~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS----~g  405 (421)
T 2ctz_A          334 GKPGAVLTFGLKGG----YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS----VG  405 (421)
T ss_dssp             TCCCSEEEEEETTH----HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE----CC
T ss_pred             CCCceEEEEEeCCC----HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE----eC
Confidence            78999999999632    123444555443333322221                         1113566665    45


Q ss_pred             HHHHHHHHHHHHHhHh
Q 042283           65 KEDANYLVDVMDCSMT   80 (82)
Q Consensus        65 ~~eid~~~~~l~~~l~   80 (82)
                      .+|+|++++.|+++|+
T Consensus       406 ~e~~~~li~~l~~al~  421 (421)
T 2ctz_A          406 LEHVEDLKAELKEALA  421 (421)
T ss_dssp             SSCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            6799999999999874

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=94.23  E-value=0.26  Score=33.19  Aligned_cols=59  Identities=10%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------------------------CCCCEEEEecCc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------------------------FYGNVFRIAPPL   61 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------------------------~~~~~i~~~PPL   61 (82)
                      +|.|.+++|++ .+       ...+.+.+.+.|+.+ ...                            ...+.||++..+
T Consensus       325 ~~~~~iv~~~~-~~-------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~  395 (412)
T 2cb1_A          325 ASGGPILTLDL-GD-------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGL  395 (412)
T ss_dssp             SSSCSEEEEEC-SS-------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCS
T ss_pred             CCCceEEEEEe-CC-------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEecc
Confidence            57899999999 42       224455566678876 320                            015789999888


Q ss_pred             ccCHHHHHHHHHHHHH
Q 042283           62 CFTKEDANYLVDVMDC   77 (82)
Q Consensus        62 ~i~~~eid~~~~~l~~   77 (82)
                      --++++++.+.++|++
T Consensus       396 ~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          396 EDPLDLLALFEEALEA  411 (412)
T ss_dssp             SCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            8888888888888764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=94.23  E-value=0.047  Score=35.68  Aligned_cols=49  Identities=8%  Similarity=-0.012  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHcCceeeecCC----CCCEEEE---ecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGGF----YGNVFRI---APPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~----~~~~i~~---~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|++++++..    ..+.+|+   .+.+..+.++++++++.|.+++
T Consensus       304 ~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l  359 (359)
T 3pj0_A          304 GAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL  359 (359)
T ss_dssp             HHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence            56788899999999987521    1245676   4567789999999999998864

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=93.74  E-value=0.083  Score=35.46  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=26.7

Q ss_pred             CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+|++++...|++|+++++++|+++++
T Consensus       398 ~~~iRis~~~~~t~eei~~~~~~l~~~~~  426 (432)
T 3a9z_A          398 RNAVRLSVGRSTTRAEVDLIVQDLKQAVN  426 (432)
T ss_dssp             TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999875

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=93.63  E-value=0.039  Score=37.61  Aligned_cols=26  Identities=12%  Similarity=0.218  Sum_probs=17.2

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHH
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMK   39 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~   39 (82)
                      ||.|+|++|++..+    .+.+.++.+.+.
T Consensus       310 ~g~G~~~~~~l~~~----~~~~~~~~~~l~  335 (400)
T 3nmy_A          310 SGFGGIVSIVLKGG----FDAAKRFCEKTE  335 (400)
T ss_dssp             SSCCSEEEEEETTH----HHHHHHHHHHCS
T ss_pred             CCCCceEEEEeCCc----HHHHHHHHHcCC
Confidence            99999999999532    123445555543

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=93.60  E-value=0.2  Score=35.02  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+++..+..     ....+|++.-...|++|++.+++.|+++++
T Consensus       388 ~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~  442 (502)
T 3hbx_A          388 EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR  442 (502)
T ss_dssp             HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            34788899999998754321     235899999999999999999999999875

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=93.55  E-value=0.12  Score=35.91  Aligned_cols=50  Identities=8%  Similarity=0.145  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCceee----ecC---CCCCEEEEecCcccC----HHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIG----KGG---FYGNVFRIAPPLCFT----KEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~----~~g---~~~~~i~~~PPL~i~----~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.+.|+.+.    +..   ...+.+||..|...|    ++|++++++.|.+++.
T Consensus       369 ~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          369 GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            4456677788999988    421   124689999997766    9999999999998875

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=93.47  E-value=0.22  Score=33.92  Aligned_cols=61  Identities=11%  Similarity=-0.073  Sum_probs=43.8

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      |++.-+++..+       ...+++.++ ++||+++++..   ..+.+|++..-  +++++++++++|.++++++
T Consensus       361 g~f~~~~~~~~-------~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~~  425 (427)
T 2hox_A          361 PSYAWVKCEWE-------EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVKAK  425 (427)
T ss_dssp             CSEEEEEECSG-------GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHTCC
T ss_pred             ceEEEEECCCc-------HHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHHHHHHHHHHHhhc
Confidence            66666777421       123555554 78999988532   25689999873  8999999999999998653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=93.44  E-value=0.2  Score=33.72  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             eEEEEEeeeCC-CCchHHHHHHHHHHHHcCceeeec-CCC---------------CC-------EEEEecCcccCHHHHH
Q 042283           14 FMLGVEFVTDS-QLRKAETLDVMDKMKQMGVLIGKG-GFY---------------GN-------VFRIAPPLCFTKEDAN   69 (82)
Q Consensus        14 lm~gie~~~~~-~~~~~~~~~v~~~~~~~Gll~~~~-g~~---------------~~-------~i~~~PPL~i~~~eid   69 (82)
                      .++.+++.... +   .....+.+.+.++|+.+++. ...               ++       .+++.....+|++|++
T Consensus       297 ~~~~i~~~~~~~~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~  373 (424)
T 2po3_A          297 QYVIVEIDEATTG---IHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR  373 (424)
T ss_dssp             CCEEEEECHHHHS---SCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH
T ss_pred             EEEEEEECCccch---hhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH
Confidence            56667664200 0   02456788889999998762 100               01       2555555999999999


Q ss_pred             HHHHHHHHhHh
Q 042283           70 YLVDVMDCSMT   80 (82)
Q Consensus        70 ~~~~~l~~~l~   80 (82)
                      +++++|.++++
T Consensus       374 ~~~~~L~~~~~  384 (424)
T 2po3_A          374 RVADLLRLCAT  384 (424)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=93.32  E-value=0.045  Score=36.21  Aligned_cols=40  Identities=15%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+...+.++|+++.++      +|+.++.+ |++++++++++|++++
T Consensus       357 ~~~~~l~~~gv~v~~~------~Ris~~~~-~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          357 QVLRLREEFGVYAVAS------GRVNVAGM-TPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHCEECCTT------CEEEGGGC-CTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCeeecCC------ceEEEeec-CHHHHHHHHHHHHhcC
Confidence            4556677899998752      69999864 9999999999998864

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=92.95  E-value=0.17  Score=33.02  Aligned_cols=66  Identities=6%  Similarity=-0.097  Sum_probs=43.7

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---CCCEEEEe---cCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---YGNVFRIA---PPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~---PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.++-+++....   ......+.+.+.++|+++++...   ....+|+.   +.+..+++++++++++|.++++
T Consensus       286 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al~  357 (357)
T 3lws_A          286 VSNMFHLHFDGQA---ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS  357 (357)
T ss_dssp             SSSEEEEEEESCH---HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred             cceEEEEEecCCh---HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhcC
Confidence            3555556664321   11256778889999999987521   12256664   3467899999999999998863

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=92.95  E-value=0.14  Score=33.69  Aligned_cols=50  Identities=10%  Similarity=0.078  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHcCceeeecCC---C----------------------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---Y----------------------GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~----------------------~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|+.+++...   +                      ..++|+......|++|+|.+++++++...
T Consensus       292 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          292 RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL  366 (373)
T ss_dssp             HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence            55788899999998874310   0                      06899998899999999999999988754

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=92.93  E-value=0.067  Score=35.70  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+...+.++|+++.++      +|+.... ++++|+++++++|++++++
T Consensus       369 ~~~~~l~~~gv~v~~~------~Ris~~~-~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          369 QVEYLINQKHIYLLPS------GRINMCG-LTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             HHHHHHHTTCEECCTT------SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecCC------cEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence            4455566899999763      5888773 5999999999999998863

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=92.91  E-value=0.48  Score=32.03  Aligned_cols=65  Identities=11%  Similarity=0.043  Sum_probs=44.7

Q ss_pred             ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec----------------------------CCCCCEEEEecC
Q 042283            9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG----------------------------GFYGNVFRIAPP   60 (82)
Q Consensus         9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~----------------------------g~~~~~i~~~PP   60 (82)
                      .+|.|-|+.+++...       ...+.+.+.+.|++.+..                            |...+.||++..
T Consensus       308 ~~~~g~~~~~~l~~~-------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg  380 (403)
T 3cog_A          308 CTGCTGMVTFYIKGT-------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG  380 (403)
T ss_dssp             CSCCCSEEEEEESSC-------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC
T ss_pred             CCCCceEEEEEecCC-------HHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC
Confidence            457799999987421       123445556678765431                            112578999999


Q ss_pred             cccCHHHHHHHHHHHHHhHh
Q 042283           61 LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        61 L~i~~~eid~~~~~l~~~l~   80 (82)
                      +--++++++.+.++|+++++
T Consensus       381 ~e~~~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          381 LEDEEDLLEDLDQALKAAHP  400 (403)
T ss_dssp             SSCHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHhhc
Confidence            98888888888888877654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=92.87  E-value=0.35  Score=34.30  Aligned_cols=47  Identities=6%  Similarity=-0.024  Sum_probs=38.0

Q ss_pred             HHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           33 DVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+.+.++||.+.++..   ..+.+|++.. ..+++++++++++|+++++
T Consensus       471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~  520 (546)
T 2zy4_A          471 MLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMAD  520 (546)
T ss_dssp             HHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence            466778899999998632   2468999987 5789999999999998875

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=92.74  E-value=0.37  Score=32.81  Aligned_cols=50  Identities=18%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+.++|++++.+.     ...+.+|++.--..|++|+|.+++.|+++++
T Consensus       378 ~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          378 LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             HHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            3578888999999765321     1244899998777789999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=92.71  E-value=0.076  Score=35.15  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .+...+.++|+++.++      +|++++ .++++|+++++++|+++
T Consensus       354 ~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          354 QVKRIKEEFGIYMVGD------SRINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHCEECCTT------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecCC------CeEEee-cCCHhhHHHHHHHHHHc
Confidence            4666777899998753      589988 58999999999999876

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=92.23  E-value=0.41  Score=31.55  Aligned_cols=68  Identities=4%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-------------------------------CCEEEEec
Q 042283           11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-------------------------------GNVFRIAP   59 (82)
Q Consensus        11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-------------------------------~~~i~~~P   59 (82)
                      ..|.+..+.+....   ......+.+.+.++|+.++.+...                               .+.|+|.-
T Consensus       288 ~~~~~~~~~~~~~~---~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  364 (388)
T 1b9h_A          288 NSHYMAMFRIPGLT---EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH  364 (388)
T ss_dssp             CCCSEEEEECTTCC---HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred             cceEEEEEEeCCcC---cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence            34677777774210   123567888899999998764210                               12467766


Q ss_pred             Cccc-CHHHHHHHHHHHHHhHhc
Q 042283           60 PLCF-TKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        60 PL~i-~~~eid~~~~~l~~~l~~   81 (82)
                      --.+ |++|+|.++++|.+++++
T Consensus       365 ~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          365 RVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Confidence            6677 999999999999998763

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=92.05  E-value=0.12  Score=34.08  Aligned_cols=40  Identities=13%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+...+.++|+++.++    .  |+... .++++++++++++|++++
T Consensus       358 ~~~~~l~~~gi~v~~g----~--Ris~~-~~~~~~i~~~~~~l~~~l  397 (397)
T 3fsl_A          358 QVDRLREEFGVYLIAS----G--RMCVA-GLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHTTCEECCTT----C--EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCEEECCC----C--eEEEE-ecCHhhHHHHHHHHHhhC
Confidence            4566777899999874    2  77764 568888999999998864

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=91.36  E-value=0.93  Score=30.28  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec--C--------------------------CCCCEEEEecCc
Q 042283           10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG--G--------------------------FYGNVFRIAPPL   61 (82)
Q Consensus        10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~--g--------------------------~~~~~i~~~PPL   61 (82)
                      +|.|.|+++++..        ...+.+.+.+.|++.+..  |                          ...+.||++..+
T Consensus       301 ~g~g~~~~~~l~~--------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~  372 (389)
T 3acz_A          301 TGYGSTFLFEMKS--------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI  372 (389)
T ss_dssp             SSCCSEEEEEESS--------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS
T ss_pred             CCCCeEEEEEECC--------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc
Confidence            6789999999842        123445566778877652  1                          114789988776


Q ss_pred             ccCHHHHHHHHHHHHHhHhc
Q 042283           62 CFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        62 ~i~~~eid~~~~~l~~~l~~   81 (82)
                      -    +.+++++.++++|++
T Consensus       373 ~----~~~~li~~l~~al~~  388 (389)
T 3acz_A          373 E----NVDDIIADLKQALEL  388 (389)
T ss_dssp             S----CHHHHHHHHHHHHTC
T ss_pred             C----CHHHHHHHHHHHHhh
Confidence            5    667777777777653

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=91.34  E-value=0.53  Score=32.24  Aligned_cols=49  Identities=10%  Similarity=0.125  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHcCce-eeec------------CCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVL-IGKG------------GFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll-~~~~------------g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|+. ++..            ....+.+|++..+..|++|+|+++++|++++
T Consensus       394 ~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          394 PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            34677788888852 2221            1124689999999999999999999998765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=91.31  E-value=0.18  Score=33.89  Aligned_cols=41  Identities=12%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+...+.++|+++.+.+      |+.+. .++++++++++++|+++++
T Consensus       380 ~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~~~~~~l~~~l~  420 (420)
T 4f4e_A          380 QVDRLREEFGIYAVSTG------RICVA-ALNTRNLDVVANAIAAVLK  420 (420)
T ss_dssp             HHHHHHHHHCEECCTTS------EEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCEEecCCC------eEEEe-cCCHHHHHHHHHHHHHHhC
Confidence            45667778999998742      77764 5688999999999999873

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=91.00  E-value=0.27  Score=34.24  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             HHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           35 MDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        35 ~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+.++||++.++..     ..+.+|++..  .+++++++++++|.++++
T Consensus       444 ~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~  492 (500)
T 3tcm_A          444 LRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHE  492 (500)
T ss_dssp             HHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence            3556678999987532     2357999977  899999999999998875

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=90.67  E-value=0.61  Score=31.03  Aligned_cols=51  Identities=8%  Similarity=0.018  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHcCceeeecCCC-------------C---------CEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFY-------------G---------NVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~-------------~---------~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+.+.+.++|+.+++....             +         +.+++....-.|++|+|.++++|++++.
T Consensus       313 ~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          313 KISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             HHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence            3567888899999998864200             0         2233333444899999999999999875

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=90.12  E-value=0.2  Score=33.45  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             HH-HHHHHcCceeeecCC---CCCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283           34 VM-DKMKQMGVLIGKGGF---YGNVFRIAPP-LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        34 v~-~~~~~~Gll~~~~g~---~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++ ..+.++||++.++..   ..+.+||.++ ...++.+++++.+++++++++
T Consensus       318 ~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~  370 (374)
T 2aeu_A          318 IGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  370 (374)
T ss_dssp             HHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence            44 445578999987532   2458999986 456666799999999988753

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=90.09  E-value=0.82  Score=32.12  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             HHHHH-HHHcCceeeecC---CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           33 DVMDK-MKQMGVLIGKGG---FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        33 ~v~~~-~~~~Gll~~~~g---~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .++.. +.++||.+.++.   ...+.+|++-. .++++++++++++|.+++++
T Consensus       473 ~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~  524 (533)
T 3f6t_A          473 DFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE  524 (533)
T ss_dssp             HHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence            34444 457899987642   23578999853 26899999999999998753

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=89.38  E-value=0.73  Score=32.48  Aligned_cols=50  Identities=18%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHcCceeeec-------CCCCCEEEEecC-c---ccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKG-------GFYGNVFRIAPP-L---CFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~-------g~~~~~i~~~PP-L---~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+.+.+.+.|+.+...       ...+..||+.-| +   -++++|++++.+.+.+++.
T Consensus       379 ~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          379 GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            456777888899998742       123578999544 3   3799999999999998875

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=89.04  E-value=0.46  Score=35.20  Aligned_cols=47  Identities=11%  Similarity=0.014  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +..+.+.+.++|+.+..++  .+.++++..+-.|+++++.++++|.+..
T Consensus       556 ~~~l~~~L~~~gI~~e~~~--~~~v~~~~~~g~t~~~~~~l~~al~~~~  602 (755)
T 2vyc_A          556 AALVTAWLGRHGIVPTRTT--DFQIMFLFSMGVTRGKWGTLVNTLCSFK  602 (755)
T ss_dssp             HHHHHHHHHTTTCCCSEEC--SSEEEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEeecC--CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            4677788888999987764  6889999999889999999999988764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=88.96  E-value=0.21  Score=33.31  Aligned_cols=41  Identities=12%  Similarity=0.091  Sum_probs=32.5

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+...+.++|+++.+      .+|+.++. ++++++++++++|+++++
T Consensus       369 ~~~~~l~~~gi~v~~------~~Ris~~~-~~~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          369 MVKRLEETHAVYLVA------SGRASIAG-LNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             HHHHHHHHHCEECCT------TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecc------CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence            454455578999875      37999884 599999999999999875

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=88.80  E-value=0.89  Score=31.64  Aligned_cols=44  Identities=14%  Similarity=0.098  Sum_probs=34.2

Q ss_pred             HHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           35 MDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        35 ~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+.++||.+.++..     ..+.+|+.-  ..+++++++++++|.++++
T Consensus       443 ~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~  491 (498)
T 3ihj_A          443 MKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHI  491 (498)
T ss_dssp             HHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence            4556678999987432     235899987  3799999999999998875

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=86.36  E-value=1.8  Score=29.85  Aligned_cols=51  Identities=16%  Similarity=0.110  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCce-eeecC-CCCCEEEEecC-cccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVL-IGKGG-FYGNVFRIAPP-LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll-~~~~g-~~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+.+.+.++|.+ +.+.. .....+|++.. ...|+++|++++++|+++++
T Consensus       423 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  476 (481)
T 4e1o_A          423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT  476 (481)
T ss_dssp             HHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            466788888888854 33321 12357999855 56799999999999998765

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=86.20  E-value=1.5  Score=30.24  Aligned_cols=51  Identities=12%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHcCceeee-cC-CCCCEEEEecC-cccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGK-GG-FYGNVFRIAPP-LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~-~g-~~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~   80 (82)
                      ...++.+.+.++|.+... .. .....+|++.- ...|+++|+++++.|+++++
T Consensus       416 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  469 (475)
T 3k40_A          416 RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD  469 (475)
T ss_dssp             HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            456788888888865422 11 12468999865 55799999999999998764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=83.85  E-value=2.7  Score=28.77  Aligned_cols=51  Identities=6%  Similarity=-0.091  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHcCceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+.+.+.++|.+....+  ...+.+|++- ....|+++++++++.|+++++
T Consensus       419 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~  472 (486)
T 1js3_A          419 LNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA  472 (486)
T ss_dssp             HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            35678888888886543221  1246899884 445689999999999988764

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=83.59  E-value=0.42  Score=32.92  Aligned_cols=20  Identities=15%  Similarity=0.106  Sum_probs=15.7

Q ss_pred             cccCHHHHHHHHHHHHHhHh
Q 042283           61 LCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        61 L~i~~~eid~~~~~l~~~l~   80 (82)
                      |.+.-|+.+.+++.|+++|+
T Consensus       411 lsvG~E~~~dl~~dl~~al~  430 (430)
T 3ri6_A          411 LSVGIEEIEDLKEDILQALC  430 (430)
T ss_dssp             EECCSSCHHHHHHHHHHHHC
T ss_pred             EEeccCCHHHHHHHHHHhhC
Confidence            34666788999999998874

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=83.05  E-value=3.4  Score=28.83  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHcCceeeec---CCCCCEEEEec-CcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKG---GFYGNVFRIAP-PLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~---g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|.+....   +...+.+|+.. ....+++||+.+++.+++.-
T Consensus       450 ~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~  502 (511)
T 3vp6_A          450 APKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG  502 (511)
T ss_dssp             HHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            446888899999654331   11124699998 67889999999999998764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=82.99  E-value=0.8  Score=31.71  Aligned_cols=66  Identities=20%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeee-------------------------cCCCCCEEEEecCcc
Q 042283            8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGK-------------------------GGFYGNVFRIAPPLC   62 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~-------------------------~g~~~~~i~~~PPL~   62 (82)
                      +.+|.|.|++|++..+    .+.+..+...+...++-+..                         .|...+.|||+.-  
T Consensus       354 ~~~g~g~ivsf~l~~~----~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--  427 (445)
T 1qgn_A          354 QMTGFGGAVSFEVDGD----LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--  427 (445)
T ss_dssp             HCSCCCSEEEEEESSC----HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--
T ss_pred             hccCCCcEEEEEECCC----HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--
Confidence            4478899999999632    12344555554322221111                         1122468888744  


Q ss_pred             cCHHHHHHHHHHHHHhHhc
Q 042283           63 FTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        63 i~~~eid~~~~~l~~~l~~   81 (82)
                        .||+|.+++.|+++++.
T Consensus       428 --~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          428 --VEDFDDLKADILQALDS  444 (445)
T ss_dssp             --SSCHHHHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHhh
Confidence              67899999999999863

>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1

Probab=80.76  E-value=2.9  Score=22.12  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           51 YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        51 ~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.++++.||-.+|.++-++-...++.+++
T Consensus        16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~q   45 (75)
T 2fqm_A           16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQ   45 (75)
T ss_dssp             TEEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCccHHHHHHHHHHHHHHHh
Confidence            478999999999999999988888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-17
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	7e-16
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	9e-15
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-14
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	5e-14
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	2e-13
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	3e-12
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	3e-05
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	2e-04

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (175), Expect = 4e-17
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
           +K+  IGD RG G M+ +E   D    K +   T +++ + +  G+++   G Y NV RI
Sbjct: 339 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 398

Query: 58  APPLCFTKEDANYLVDVMD 76
             PL          ++++ 
Sbjct: 399 LVPLTIEDAQIRQGLEIIS 417

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 68.3 bits (166), Expect = 7e-16
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
                + D RG G +  +EF  +        LD+  K+K+ G++      +    R+ PP
Sbjct: 328 KDSKIVRDVRGKGLLCAIEFKNE----LVNVLDICLKLKENGLITR--DVHDKTIRLTPP 381

Query: 61  LCFTKEDANYLVDVMD 76
           LC TKE  +   +++ 
Sbjct: 382 LCITKEQLDECTEIIV 397

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 9e-15
 Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
               +   RG G +  +        +  +   V  +++  G+L      +G++ R APPL
Sbjct: 329 PSDVVTAVRGKGLLNAIVIKET---KDWDAWKVCLRLRDNGLLAK--PTHGDIIRFAPPL 383

Query: 62  CFTKEDANYLVDVMD 76
              +++    +++++
Sbjct: 384 VIKEDELRESIEIIN 398

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I   RG G     +   +S   K     ++   +  GV++G  G      R  P L F  
Sbjct: 392 ISRVRGRGTFCSFDTPDESIRNK-----LISIARNKGVMLGGCG--DKSIRFRPTLVFRD 444

Query: 66  EDANYLVDVMD 76
             A+  +++  
Sbjct: 445 HHAHLFLNIFS 455

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 1   DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIG--KGGFYGNVF 55
           +++  IGD RG G +LGVE V D + ++        +  +   +G+ +   +    G VF
Sbjct: 344 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 403

Query: 56  RIAPPLCFTKEDANYLVDVMD 76
           RIAPPL  ++++ +  + ++ 
Sbjct: 404 RIAPPLTVSEDEIDLGLSLLG 424

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 61.3 bits (148), Expect = 2e-13
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 6   IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
           I + RG G M+G+E    +         +    K+  VL  + G    V R  PPL   K
Sbjct: 321 IREVRGMGLMVGLELKEKA------APYIARLEKEHRVLALQAG--PTVIRFLPPLVIEK 372

Query: 66  EDANYLVDVMD 76
           ED   +V+ + 
Sbjct: 373 EDLERVVEAVR 383

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (138), Expect = 3e-12
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 2   KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
               + D R  G +  VE      +       +     + GV I     +G +  + PP 
Sbjct: 352 DAEMVADVRVLGAIGVVETTHPVNMAA-----LQKFFVEQGVWIR---PFGKLIYLMPPY 403

Query: 62  CFTKEDANYLVDVMD 76
               +    L   ++
Sbjct: 404 IILPQQLQRLTAAVN 418

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 37.9 bits (87), Expect = 3e-05
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 5   TIGDARG-WGFMLGVEFVTDSQLRKAETLDVMDK----MKQMGVLIGKGGFYGNVFRIAP 59
             G   G +GF      V + +  K   L    +    M + G+ +    F         
Sbjct: 349 CGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE----AGFT 404

Query: 60  PLCFTKEDANYLVDVMDCSMTK 81
            L  T+ED +  +      M+ 
Sbjct: 405 SLAHTEEDIDATLAAARTVMSA 426

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 36.0 bits (81), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 33  DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75
            ++D + + G       +  NV R       T ED ++L++ +
Sbjct: 299 AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.77
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.77
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.75
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.74
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.73
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.72
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.64
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.9
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	98.52
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.18
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	97.87
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	97.66
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	97.33
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.1
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	97.06
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	96.66
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	96.64
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	96.49
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	96.46
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	96.42
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	96.22
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	96.1
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	96.04
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	96.04
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	96.01
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	95.97
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	95.74
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	95.71
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	95.37
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	95.36
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	95.27
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	95.24
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	95.24
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	95.2
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	95.15
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	95.06
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	94.68
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	94.68
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	94.57
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	94.14
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	93.98
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	93.92
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	93.72
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	93.48
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	93.14
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	92.76
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	92.32
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	91.98
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	90.62
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	90.53
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	90.44
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	89.82
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	89.73
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	89.52
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	89.03
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	88.9
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	88.89
d2fqma1	65	Phosphoprotein P (M1) {Vesicular stomatitis indian	85.77
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	84.19
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	82.59
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.47
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	80.6

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=5.6e-19  Score=120.78  Aligned_cols=80  Identities=25%  Similarity=0.444  Sum_probs=71.0

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +||.+.+|||.|+|++++|..+....   ...+..+.+.|+++|+++.+++..+|+|+|+|||++|++|||+++++++++
T Consensus       340 ~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~a  419 (425)
T d1sffa_         340 KHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC  419 (425)
T ss_dssp             TCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             hCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68899999999999999998654322   456788999999999999998888899999999999999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      |++
T Consensus       420 l~e  422 (425)
T d1sffa_         420 FDE  422 (425)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            964

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.77  E-value=2.4e-19  Score=123.97  Aligned_cols=73  Identities=19%  Similarity=0.421  Sum_probs=65.8

Q ss_pred             CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +|| .|++|||+|||+|||+.++     +.+.++++.|+++|+++.+++  +++|||+|||+||++|+|+++++|+++|+
T Consensus       387 ~~~~~i~~vrG~Gl~~~ie~~~~-----~~~~~i~~~~~~~Gll~~~~~--~~~ir~~PpL~it~~eid~~~~~l~~~l~  459 (461)
T d1ohwa_         387 RYPQFISRVRGRGTFCSFDTPDE-----SIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILA  459 (461)
T ss_dssp             HCTTTCEEEEEETTEEEEECSSH-----HHHHHHHHHHHHTTEECEEET--TTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCceEEeeeeeEEEEEEcCCH-----HHHHHHHHHHHHCCeEEeeCC--CCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence            466 7899999999999999643     467889999999999999875  79999999999999999999999999997


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       460 e  460 (461)
T d1ohwa_         460 D  460 (461)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.1e-18  Score=119.84  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +++.|++|||.|+|+++|+..+.     ....+...|+++|++++++   +|+|+|+|||+||++|||+++++|+++|++
T Consensus       352 ~~~~v~~vrg~Gl~~~~e~~~~~-----~~~~~~~~~~~~Gl~~~~~---g~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         352 DAEMVADVRVLGAIGVVETTHPV-----NMAALQKFFVEQGVWIRPF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             GCTTEEEEEEETTEEEEEESSCB-----CHHHHHHHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             cCCceEEEeecccEEEEEecCcc-----cHHHHHHHHHHCCcEEEec---CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence            46789999999999999997543     3567889999999999886   689999999999999999999999999975

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.74  E-value=3.7e-18  Score=116.74  Aligned_cols=80  Identities=28%  Similarity=0.556  Sum_probs=67.1

Q ss_pred             CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeee--cCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283            2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGK--GGFYGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus         2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~--~g~~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      +||.|.+|||.|+|+||||+.+..+.   ...+..+.+.|+++|++...  .+..+++|+|+|||+||++|||+++++++
T Consensus       345 ~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~  424 (431)
T d1zoda1         345 RFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG  424 (431)
T ss_dssp             HCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998754433   34677899999999987432  23468999999999999999999999999


Q ss_pred             HhHhc
Q 042283           77 CSMTK   81 (82)
Q Consensus        77 ~~l~~   81 (82)
                      ++|++
T Consensus       425 ~al~~  429 (431)
T d1zoda1         425 QAIER  429 (431)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.73  E-value=3.3e-18  Score=116.36  Aligned_cols=75  Identities=25%  Similarity=0.477  Sum_probs=66.1

Q ss_pred             CCCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         1 ~~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++||.|.+|||+|+|++++|.++..    ....+...|+++|+++.+++  +++|||+|||++|++|||+++++|+++|+
T Consensus       328 ~~~~~v~~vrg~Gl~~~i~~~~~~~----~~~~~~~~l~~~Gl~~~~~~--~~~ir~~Ppl~it~~~id~~~~~l~~alk  401 (404)
T d1z7da1         328 KDSKIVRDVRGKGLLCAIEFKNELV----NVLDICLKLKENGLITRDVH--DKTIRLTPPLCITKEQLDECTEIIVKTVK  401 (404)
T ss_dssp             TTCTTEEEEEEETTEEEEEECTTTC----CHHHHHHHHHHTTEECCEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCeEEEEeeCcEEEEEEcCCcc----cHHHHHHHHHhCCeEEecCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence            3688999999999999999986542    35668889999999998874  79999999999999999999999999986


Q ss_pred             c
Q 042283           81 K   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       402 ~  402 (404)
T d1z7da1         402 F  402 (404)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=114.06  Aligned_cols=74  Identities=16%  Similarity=0.390  Sum_probs=64.6

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ++.|.+|||.|+|++|++.++..   ..+.++.+.|+++|+++.+++  +++|+|+|||+||++|||+++++++++|.+
T Consensus       330 ~~~i~~vRg~Gl~~~i~~~~~~~---~~~~~~~~~l~~~Gvl~~~~~--~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         330 SDVVTAVRGKGLLNAIVIKETKD---WDAWKVCLRLRDNGLLAKPTH--GDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             TTTEEEEEEETTEEEEEECCCSS---CCHHHHHHHHHHTTEECEEEE--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cccceeeeecccEEEEEEecCCc---hhHHHHHHHHHhCCeEEecCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            46799999999999999976443   245678899999999998863  799999999999999999999999999975

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=2.8e-16  Score=106.45  Aligned_cols=70  Identities=29%  Similarity=0.461  Sum_probs=61.6

Q ss_pred             CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++.|.+|||.|+|++||+.++      ....+.+.++++|+++.+++  +++|||+|||++|++|||+++++++++|+
T Consensus       318 ~~~v~~vrg~Gl~~~ie~~~~------~~~~~~~~~~~~g~l~~~~g--~~~ir~~Ppl~it~~~ld~~~~~i~~aLS  387 (387)
T d1vefa1         318 SPKIREVRGMGLMVGLELKEK------AAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA  387 (387)
T ss_dssp             CTTEEEEEEETTEEEEEESSC------SHHHHHHHHHHHCEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEeecceEEEEEEeCC------chHHHHHHHHHCCCeEEecC--CCEEEEECCccCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999654      24567788899999988875  79999999999999999999999999984

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.90  E-value=9.1e-10  Score=74.73  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV   74 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~   74 (82)
                      ++....+++.|.|+++.+.......        .+....+...|+++||++.+.+   . ..+.||+++|++|||+++++
T Consensus       344 ~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~---~-~~~~~~l~~Te~dId~~l~a  419 (427)
T d2gsaa_         344 TGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ---F-EAGFTSLAHTEEDIDATLAA  419 (427)
T ss_dssp             TTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---T-SCEECCTTCCHHHHHHHHHH
T ss_pred             cCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCC---C-cceeCCCCCCHHHHHHHHHH
Confidence            4555567788889999886432211        2345678889999999988753   1 23569999999999999999


Q ss_pred             HHHhHhc
Q 042283           75 MDCSMTK   81 (82)
Q Consensus        75 l~~~l~~   81 (82)
                      ++++|++
T Consensus       420 l~~al~~  426 (427)
T d2gsaa_         420 ARTVMSA  426 (427)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9999975

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.2e-07  Score=59.86  Aligned_cols=50  Identities=12%  Similarity=0.254  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.++.+.|+++|+++++.+  .+.+||++++.+|++|||+++++|++++++
T Consensus       292 ~a~~l~~~L~~~Gi~v~~~~--~~~iRi~~~~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         292 NAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             CHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            45678999999999999874  789999999999999999999999999874

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.18  E-value=2.5e-06  Score=53.39  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             HHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      .+.+.++++|+.+.......+.|||+|++..|+||||+++++|+++
T Consensus       299 ~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         299 AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4677899999988665445789999999999999999999999875

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.87  E-value=1.7e-05  Score=51.70  Aligned_cols=50  Identities=18%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHhcC
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      +..+.+.+.++|+++..+  .+++|||+| |+.-|++|||.++++|+++|++|
T Consensus       351 ~~~v~~~L~~~gi~~~~r--~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~  401 (404)
T d1qz9a_         351 GYAVIQALIDRGVIGDYR--EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK  401 (404)
T ss_dssp             HHHHHHHHHTTTEECEEE--TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEeec--CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            456888889999987544  368999999 78889999999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=6e-05  Score=50.18  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+..+.+.|+++|+++.+..     .....||++++...|++|||+++++|+++.++
T Consensus       339 ~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         339 VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            356788999999999987542     12345999999999999999999999998764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=97.33  E-value=0.00035  Score=45.10  Aligned_cols=60  Identities=8%  Similarity=0.059  Sum_probs=45.4

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ++-+.++.+....     ....+.+.+.++|+.++..+ .++.+|++|.+.-|++|+|.+++.|++
T Consensus       319 ~~~~vsf~~~~~~-----~~~~i~~~L~~~gi~v~~~~-~~~~lRis~~~~nt~edid~ll~~l~e  378 (381)
T d1elua_         319 QAGLVSFTVDSPL-----GHRAIVQKLEEQRIYLRTIA-DPDCIRACCHYITDEEEINHLLARLAD  378 (381)
T ss_dssp             SSSEEEEEECSSS-----CHHHHHHHHHHTTEECEEET-TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             cccEEEEEcCCCC-----CHHHHHHHHHhCCcEEEecC-CCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence            3445566553221     24567888999999988764 478999999999999999999999875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.10  E-value=0.00049  Score=45.77  Aligned_cols=78  Identities=9%  Similarity=0.038  Sum_probs=48.3

Q ss_pred             CCceeeecccceEEEEEeeeCCCCc-h-HHHHHHHHHHHHcCceeeec---------------CCCCCEEEEe-cCcccC
Q 042283            3 YGTIGDARGWGFMLGVEFVTDSQLR-K-AETLDVMDKMKQMGVLIGKG---------------GFYGNVFRIA-PPLCFT   64 (82)
Q Consensus         3 ~~~v~~vRg~Glm~gie~~~~~~~~-~-~~~~~v~~~~~~~Gll~~~~---------------g~~~~~i~~~-PPL~i~   64 (82)
                      .+.+...++.++++.++...+.... . .....+...+.+.|+-....               ....+.+||+ |++++|
T Consensus       343 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T  422 (465)
T d1ax4a_         343 IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYT  422 (465)
T ss_dssp             CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSC
T ss_pred             CccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCC
Confidence            3556677777777655433222211 1 12223444556677654321               1235689995 889999


Q ss_pred             HHHHHHHHHHHHHhHh
Q 042283           65 KEDANYLVDVMDCSMT   80 (82)
Q Consensus        65 ~~eid~~~~~l~~~l~   80 (82)
                      ++|+|.++++++++++
T Consensus       423 ~eeiD~vv~~l~~v~~  438 (465)
T d1ax4a_         423 NDHMDYIADALIGLKE  438 (465)
T ss_dssp             HHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00052  Score=45.19  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      +.+..+.+.++++|+++.+..     .....+|+++....|++|||.++++|..+
T Consensus       328 ~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         328 SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            457788999999999987532     11346999999999999999999998764

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0025  Score=40.94  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             HHHHHHHHHH-cCceeeecC--CCCCEEEEe-cCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQ-MGVLIGKGG--FYGNVFRIA-PPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~-~Gll~~~~g--~~~~~i~~~-PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.+ +|+.+..+.  ..++++|+. ..+..|++|+|.++++|+++|++
T Consensus       329 ~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~  383 (388)
T d1h0ca_         329 WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQH  383 (388)
T ss_dssp             HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567777765 588776532  246799998 66788999999999999999964

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=96.64  E-value=0.00034  Score=42.60  Aligned_cols=28  Identities=11%  Similarity=0.232  Sum_probs=25.1

Q ss_pred             CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           51 YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        51 ~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+.+||++.+..|++|||+++++|++.
T Consensus       313 ~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         313 GTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             TEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3678999999999999999999999863

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=96.49  E-value=0.0022  Score=41.56  Aligned_cols=63  Identities=17%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++....     ....+.+.|.++||++.++.      ...+.+||.... .+++++++++++|.++|++
T Consensus       330 g~~~~~~~~~~~-----~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         330 GMFVRVTLPEGI-----DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             SSEEEEECCTTC-----CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCC-----CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHH
Confidence            677777775321     13357778999999998752      124789999644 5899999999999999864

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=96.46  E-value=0.0084  Score=38.13  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      -|.++-+++..+       ...+.+.+.++|++++++..    ..+.+||+=+   +++|+++++++|++.|
T Consensus       294 ~~~f~~~~~~~~-------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         294 RANYLLLRCERE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             SSSEEEEEESCT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCC-------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            355555665432       22477788999999988642    2578999732   8999999999999875

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.42  E-value=0.0046  Score=40.46  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+...+-++|+.++.+.          ...++|||+|.+.-|++|+|.+++.|+++++
T Consensus       346 ~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~  405 (408)
T d1t3ia_         346 ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR  405 (408)
T ss_dssp             HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4567777888999876421          1256899999999999999999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.02  Score=37.28  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ++-+.++.+...      .+..+...+-++|+.++...          ...+.+|++|.+.-|++|+|.++++|+++++
T Consensus       330 r~~ivsf~~~~~------~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         330 RLGVIAFNLGKH------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             CCSEEEEEETTC------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCCC------CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            344555665321      24456777778999886421          1246899999999999999999999998864

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=96.10  E-value=0.0086  Score=37.96  Aligned_cols=50  Identities=18%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             HHHHHHHHH-HcCceeeecC--CCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMK-QMGVLIGKGG--FYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g--~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+.+.+. ++|+.+..+.  ..++++|+.+ .+..|++|+|+++++|+++|+
T Consensus       324 ~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         324 GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            456777765 5699876532  1468999996 577799999999999999884

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.013  Score=37.24  Aligned_cols=63  Identities=8%  Similarity=-0.004  Sum_probs=44.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++.....    ....++..+++ +||.+.++..    ..+.+|++  +..+++++++++++|.+++++
T Consensus       292 g~~~~~~l~~~~~----~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~~~l~~  359 (361)
T d1d2fa_         292 TYLAWLDLRPLNI----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLINAIRA  359 (361)
T ss_dssp             CSEEEEECGGGCC----CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEccCCCC----CHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHh
Confidence            6666677742111    24567777665 5999987422    24679998  457899999999999999863

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=96.04  E-value=0.011  Score=39.43  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             HHHHHHHcCceeeecC---CCCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           34 VMDKMKQMGVLIGKGG---FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g---~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      +.+.+.++||+++++.   ..++.+|++  +.-+++++++++++|++.+++|
T Consensus       376 ~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~ak  425 (425)
T d2hoxa1         376 CYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVKAK  425 (425)
T ss_dssp             HHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhcC
Confidence            4456789999999753   346789998  6778999999999999999886

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.01  E-value=0.012  Score=37.01  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      ...+.+.+.++|+++.+++ ..++++|+..--.++++|||.++++|+++|
T Consensus       309 ~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         309 FSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             HHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            4568889999999887643 247789997421369999999999999987

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.022  Score=36.33  Aligned_cols=60  Identities=13%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHH-HHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDK-MKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~-~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+++..+       ..+++.. +.++||++.++..  ..+.+|++  +..+++++++++++|+++|+.
T Consensus       313 g~f~~~~~~~~-------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~~  375 (375)
T d1o4sa_         313 AFYLFFKVRGD-------DVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLNS  375 (375)
T ss_dssp             SSEEEEECSSC-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEECCCC-------HHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhcC
Confidence            56666666321       2234444 5578999988531  35689998  567899999999999999863

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=95.74  E-value=0.013  Score=37.32  Aligned_cols=51  Identities=14%  Similarity=0.208  Sum_probs=38.7

Q ss_pred             HHHHHHHHHH-cCceeeecC--CCCCEEEEe-cCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQ-MGVLIGKGG--FYGNVFRIA-PPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~-~Gll~~~~g--~~~~~i~~~-PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+...+.+ +|+.+..+.  ..++++|+. .-.+-|+|+|+.++++|+++|++
T Consensus       327 ~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~  381 (388)
T d2ch1a1         327 WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  381 (388)
T ss_dssp             HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            4567777765 599887532  246799999 55566899999999999999863

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.014  Score=37.15  Aligned_cols=50  Identities=12%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHcCceeeecC-----------------C----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMKQMGVLIGKGG-----------------F----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g-----------------~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +..+...+-++|+.++...                 .    ..+.||++|.+.-|++|||.+++.|++.++
T Consensus       304 ~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         304 GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            4566667777888776420                 0    124699999999999999999999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=95.37  E-value=0.032  Score=35.97  Aligned_cols=49  Identities=10%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             HHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+++.+++ .||++.++..    ..+.+||+  +..++++|++++++|.++|++
T Consensus       339 ~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~~  392 (394)
T d1c7na_         339 HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALKD  392 (394)
T ss_dssp             HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHHh
Confidence            4456777765 4999987421    25689997  667899999999999999864

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.01  Score=39.28  Aligned_cols=31  Identities=10%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             CCCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283           51 YGNVFRIAPP-LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        51 ~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+.+||++| .+.|++|||.++++|+++++.
T Consensus       410 ~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             SCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999755 789999999999999998864

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=95.27  E-value=0.018  Score=36.42  Aligned_cols=52  Identities=17%  Similarity=0.045  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ....+.+.+.++|+.++.+-..-..+|+.--..+|.||++.+++.|++-.++
T Consensus       308 ~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         308 LEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            4567888999999988764111134999999999999999999999986543

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.24  E-value=0.022  Score=36.41  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=37.7

Q ss_pred             HHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      ..++++.++ ++||++.++..    ..+.+|++  +..+++++++++++|.++|+++
T Consensus       331 ~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         331 SKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence            445666554 67999987521    25679987  4568999999999999999764

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=95.24  E-value=0.013  Score=38.03  Aligned_cols=63  Identities=11%  Similarity=0.091  Sum_probs=44.0

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++.+..     ....+.+.+.++||++.|+..      ..+.+|++-. +.+++++++++++|.++|++
T Consensus       344 g~f~~~~~~~~~-----d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         344 GLFIWLTLPEGF-----DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLE  412 (420)
T ss_dssp             SSEEEEECCTTC-----CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCC-----CHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence            566667764321     122456778899999987521      2468999843 36889999999999999863

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.20  E-value=0.035  Score=35.83  Aligned_cols=65  Identities=14%  Similarity=0.072  Sum_probs=43.9

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHH-HHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMD-KMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~-~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      |+++=+++......   ....++. .+.++||++.|+..    ..+.+||+  +..+++++++++++|.+++++|
T Consensus       326 g~~~~~~l~~~~~~---~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~er  395 (395)
T d1xi9a_         326 AFYIFPKIEVGPWK---NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMKER  395 (395)
T ss_dssp             SSEECCEECSCSCS---SHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEeEECCCCCCC---CHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhcC
Confidence            66665666432111   1223444 45578999987531    25679997  6678999999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.024  Score=36.39  Aligned_cols=61  Identities=10%  Similarity=0.157  Sum_probs=43.1

Q ss_pred             ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      |+++=+++.....    ....+.+.+.++||++.++..  ..+.+|+.  +..+++++++++++|.++|
T Consensus       320 g~~~~~~~~~~~~----~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         320 AFYVLMDTSPIAP----DEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARVL  382 (382)
T ss_dssp             TTEEEEECTTTCS----SHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGGC
T ss_pred             eEEEeEeCCCCCC----CHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHhC
Confidence            5666566642211    244567788899999988531  35689987  4568999999999998875

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.06  E-value=0.045  Score=34.49  Aligned_cols=42  Identities=12%  Similarity=0.245  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      .+..+.+.+.++|++++++   .+.+|++   +-+.+|+++++++|++
T Consensus       292 ~~~~~~~~L~~~GI~vr~~---~~~vRis---~g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         292 EKERLLEHLRTKNVAVRSF---REGVRIT---IGKREENDMILRELEV  333 (334)
T ss_dssp             HHHHHHHHHHHTTEECEEE---TTEEEEE---CCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCEECCC---CCeEEEE---cCCHHHHHHHHHHHhc
Confidence            4567889999999999875   6899998   4588999999988875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.68  E-value=0.054  Score=34.91  Aligned_cols=49  Identities=12%  Similarity=0.116  Sum_probs=37.0

Q ss_pred             HHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..++++.++ ++||.+.|+..  ..+.+|++  +..+++++++++++|++.+++
T Consensus       358 ~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         358 DVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHh
Confidence            345666665 46999987521  35689987  677899999999999998864

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.055  Score=34.22  Aligned_cols=43  Identities=16%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~   76 (82)
                      ...+.+.+.++|+++++++.   ..+.+|++   +-|++|.+.++++|+
T Consensus       305 ~~~~~~~L~~~gIlvr~~~~~~~~~~~lRis---igt~ee~~~~l~aLk  350 (354)
T d1fg7a_         305 SSAVFKSLWDQGIILRDQNKQPSLSGCLRIT---VGTREESQRVIDALR  350 (354)
T ss_dssp             HHHHHHHHHHTTEECEECTTSTTCTTEEEEE---CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEecCCCCCCCCCEEEEE---eCCHHHHHHHHHHHh
Confidence            34688889999999988653   25789997   348899999998886

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=94.57  E-value=0.048  Score=35.76  Aligned_cols=47  Identities=15%  Similarity=0.060  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +..+.+.+.++|+.....+  .+.++|+-..-.|++|+|.++++|.+.-
T Consensus       410 ~~~~~~~L~~~gI~~e~~~--~~~i~~~~s~~~T~edid~li~aL~ei~  456 (462)
T d1c4ka2         410 ATIVANYLRDHGIIPEKSD--LNSILFLMTPAETPAKMNNLITQLLQLQ  456 (462)
T ss_dssp             HHHHHHHHHHTTCCCSEEC--SSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeeeccC--CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            5677788889999876653  6789999988999999999999988753

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=94.14  E-value=0.068  Score=33.81  Aligned_cols=42  Identities=17%  Similarity=0.280  Sum_probs=33.0

Q ss_pred             HHHHHcCceeeecC------CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           36 DKMKQMGVLIGKGG------FYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        36 ~~~~~~Gll~~~~g------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      +.+.++|+++.++.      ...+.+|++  +.-+++++++++++|.++|
T Consensus       321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         321 RLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             HHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            44668999998742      235789997  6678999999999999875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.98  E-value=0.094  Score=34.48  Aligned_cols=50  Identities=24%  Similarity=0.269  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           29 AETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        29 ~~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      ..+..+.+.++ ++|+++.+..+     ....+|+++.-.-|++|||.++++|++.
T Consensus       340 ~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         340 VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            45667777755 68998876421     2357999999999999999999999874

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.14  Score=31.66  Aligned_cols=51  Identities=16%  Similarity=-0.036  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+...+.++|+.++.+-..-..+|++=-..+|+||++.+++.|++-.+
T Consensus       307 ~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~  357 (360)
T d1bjna_         307 LDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER  357 (360)
T ss_dssp             GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            456678889999998765311113499998778999999999999998553

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.72  E-value=0.041  Score=35.75  Aligned_cols=74  Identities=8%  Similarity=0.023  Sum_probs=46.1

Q ss_pred             eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeee-----------------cC-----CCCCEEEEecCcccCH
Q 042283            8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGK-----------------GG-----FYGNVFRIAPPLCFTK   65 (82)
Q Consensus         8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~-----------------~g-----~~~~~i~~~PPL~i~~   65 (82)
                      +.+.......+.+.............+...+.+.|+-...                 .+     ...+.+++.+.+.+|+
T Consensus       343 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~  422 (445)
T d3bc8a1         343 QTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKM  422 (445)
T ss_dssp             CCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCH
T ss_pred             cCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCH
Confidence            3444555555555432222222344566677777763110                 01     1235589999999999


Q ss_pred             HHHHHHHHHHHHhHhc
Q 042283           66 EDANYLVDVMDCSMTK   81 (82)
Q Consensus        66 ~eid~~~~~l~~~l~~   81 (82)
                      +|||.+++.|++++++
T Consensus       423 eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         423 QDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999863

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=93.48  E-value=0.32  Score=31.40  Aligned_cols=68  Identities=6%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             ceEEEEEeeeCCCCc-hHHHHHHHHHHH-HcCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLR-KAETLDVMDKMK-QMGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~-~~~~~~v~~~~~-~~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |+++-+++....... ......+++.++ ++||++.|+.    ..++.+|++-. ..+++++++++++|+++|..
T Consensus       353 g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         353 GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence            777777775322111 223345666666 5799998742    23578998732 35778899999999999853

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.053  Score=34.62  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             CEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           53 NVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        53 ~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      +.||+++.+.-|++|+|.+++.|+++++
T Consensus       350 g~iRiS~~~~nt~edid~l~~~l~~~l~  377 (391)
T d1p3wa_         350 SSIRFSLGRFTTEEEIDYTIELVRKSIG  377 (391)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999875

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=92.76  E-value=0.49  Score=30.53  Aligned_cols=68  Identities=10%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             ceEEEEEeeeCCCCc-hHHHHHHHHHHH-HcCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           13 GFMLGVEFVTDSQLR-KAETLDVMDKMK-QMGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        13 Glm~gie~~~~~~~~-~~~~~~v~~~~~-~~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      |++.-+++...-... .+....+++.++ ++||++.|+.    ..++.+|++=. ..+++++++++++|+++|++
T Consensus       356 g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         356 GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence            677767774321111 223345666655 6799998742    23578998731 35788999999999999864

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=92.32  E-value=0.3  Score=30.88  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=41.2

Q ss_pred             cceEEEEEeeeCCCCchHHHHHHHHHHHH------cCceeeecC-------CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283           12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQ------MGVLIGKGG-------FYGNVFRIAPPLCFTKEDANYLVDVMDCS   78 (82)
Q Consensus        12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~------~Gll~~~~g-------~~~~~i~~~PPL~i~~~eid~~~~~l~~~   78 (82)
                      -|+++-+++...      ....+.+.+++      +|+.+.++.       ...+.+||+  +..+++++++++++|.++
T Consensus       312 ~g~~~~~~lp~~------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~  383 (389)
T d2gb3a1         312 GAFYITAELPVE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEG  383 (389)
T ss_dssp             BSSEEEEECSSS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCC------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHH
Confidence            377777776321      13345555543      366665542       124689997  678999999999999999


Q ss_pred             Hhc
Q 042283           79 MTK   81 (82)
Q Consensus        79 l~~   81 (82)
                      |++
T Consensus       384 lk~  386 (389)
T d2gb3a1         384 LKM  386 (389)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=91.98  E-value=0.21  Score=31.91  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=36.3

Q ss_pred             HHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           32 LDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        32 ~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ..+++.++ ++||.+.++..  ..+.+|+.  +..+++++++++++|+++|+.
T Consensus       336 ~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls--~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         336 LDFCSELLDQHQVATVPGAAFGADDCIRLS--YATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             HHHHHHHHHHHCEECEEGGGGTCTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCCeEEEE--EeCCHHHHHHHHHHHHHHHHH
Confidence            34555554 67999987531  35789988  456899999999999999863

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=90.62  E-value=0.29  Score=32.59  Aligned_cols=50  Identities=14%  Similarity=0.084  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHcCceeeec---CCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283           30 ETLDVMDKMKQMGVLIGKG---GFYGNVFRIAPPLCFTKEDANYLVDVMDCSM   79 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~---g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l   79 (82)
                      .+..+.+++.++|+.....   -...+.+.+.|-=+-|++|||.++++++++|
T Consensus       385 ~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         385 DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            3567889999999864221   1135789999999999999999999999874

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=90.53  E-value=0.55  Score=29.00  Aligned_cols=51  Identities=14%  Similarity=-0.046  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ....+...+.++|+..+.+-..-..+|++=--.+|.||++.+++.+++-.+
T Consensus       308 ~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         308 LNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence            456788889999998765311223599886556799999999999988764

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.33  Score=31.21  Aligned_cols=47  Identities=6%  Similarity=0.068  Sum_probs=34.9

Q ss_pred             HHHHHH-HHHcCceeeecCC---------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           32 LDVMDK-MKQMGVLIGKGGF---------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        32 ~~v~~~-~~~~Gll~~~~g~---------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ..++.. +.++||.+.|+..         ..+.+|++  +..+++++++++++|++...
T Consensus       361 ~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~l~~a~~rl~~~~~  417 (418)
T d1w7la_         361 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence            445555 4568999987521         24789997  67799999999999988654

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=89.82  E-value=0.57  Score=29.68  Aligned_cols=51  Identities=20%  Similarity=0.304  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      ...+.+.+.++|+.+.++.  ..+.++|+.=-=.++.+|++.+++.++++|++
T Consensus       294 ~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         294 YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567888899998886532  23578999722268999999999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=89.73  E-value=0.52  Score=31.57  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCceeeec---CCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           31 TLDVMDKMKQMGVLIGKG---GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~---g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +..+.+.+.++|++-...   ....+.+.+++-=.-|++|||.++++|++++++
T Consensus       386 ~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         386 ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            456888899999864211   113578888888889999999999999998875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.52  E-value=0.44  Score=30.60  Aligned_cols=47  Identities=13%  Similarity=0.211  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHcCceeeec-------------CCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           31 TLDVMDKMKQMGVLIGKG-------------GFYGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        31 ~~~v~~~~~~~Gll~~~~-------------g~~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ..++...+.++|+....+             -...+.++++..+-.|++|||.+++.|++
T Consensus       374 ~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         374 PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence            446777888888754211             02357899999999999999999999986

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=89.03  E-value=0.55  Score=30.08  Aligned_cols=48  Identities=8%  Similarity=0.015  Sum_probs=35.1

Q ss_pred             HHHHHHHHH-HcCceeeecCCC---------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           31 TLDVMDKMK-QMGVLIGKGGFY---------GNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        31 ~~~v~~~~~-~~Gll~~~~g~~---------~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      ...+++.++ ++||.+.|+...         .+.+|++-  ..+++++++++++|++.+.
T Consensus       359 ~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         359 DYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHHHHHHHHHHc
Confidence            345666665 569999875211         35799884  5689999999999999874

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=88.90  E-value=0.32  Score=32.15  Aligned_cols=30  Identities=13%  Similarity=0.128  Sum_probs=25.4

Q ss_pred             CCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283           52 GNVFRIAPP-LCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        52 ~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~   81 (82)
                      .+.+||+.| .+.|++|||.++++|+++.+.
T Consensus       400 ~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence            356999877 678999999999999998764

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.46  Score=30.07  Aligned_cols=44  Identities=7%  Similarity=0.047  Sum_probs=32.4

Q ss_pred             HHHHHHH-HHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283           32 LDVMDKM-KQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDC   77 (82)
Q Consensus        32 ~~v~~~~-~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~   77 (82)
                      ..+++.+ .++||++.|+..      ..+.+||+  +..+++++++++++|++
T Consensus       331 ~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         331 VEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             HHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHhC
Confidence            3456655 468999987521      23579997  67799999999999875

>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}

class: Alpha and beta proteins (a+b)
fold: Phosphoprotein oligomerization domain-like
superfamily: Phosphoprotein oligomerization domain-like
family: Phosphoprotein oligomerization domain-like
domain: Phosphoprotein P (M1)
species: Vesicular stomatitis indiana virus [TaxId: 11277]

Probab=85.77  E-value=0.68  Score=22.67  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283           51 YGNVFRIAPPLCFTKEDANYLVDVMDCSMT   80 (82)
Q Consensus        51 ~~~~i~~~PPL~i~~~eid~~~~~l~~~l~   80 (82)
                      .+.+++++||-.+|.++-++-...++.+++
T Consensus        12 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~q   41 (65)
T d2fqma1          12 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQ   41 (65)
T ss_dssp             TEEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCcchHHHHHHHHHHHHHHh
Confidence            478999999999999999988888877654

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=84.19  E-value=0.39  Score=23.71  Aligned_cols=19  Identities=11%  Similarity=0.034  Sum_probs=16.6

Q ss_pred             ecCcccCHHHHHHHHHHHH
Q 042283           58 APPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        58 ~PPL~i~~~eid~~~~~l~   76 (82)
                      +||..+|++|++.+.+-|.
T Consensus        50 MP~~~Ls~~ei~~i~~Yl~   68 (71)
T d1c75a_          50 MPGGIAKGAEAEAVAAWLA   68 (71)
T ss_dssp             BCSCSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            8999999999999887654

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.59  E-value=0.47  Score=23.73  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=17.0

Q ss_pred             EecCcccCHHHHHHHHHHHH
Q 042283           57 IAPPLCFTKEDANYLVDVMD   76 (82)
Q Consensus        57 ~~PPL~i~~~eid~~~~~l~   76 (82)
                      .+||+.+|++|+..+++-|.
T Consensus        60 ~MP~~~lsd~ei~~la~Yi~   79 (82)
T d351ca_          60 PMPPNAVSDDEAQTLAKWVL   79 (82)
T ss_dssp             CBCCCSCCHHHHHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHH
Confidence            38999999999998887654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.47  E-value=0.55  Score=23.10  Aligned_cols=50  Identities=12%  Similarity=0.063  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHcCceeeec--CCCCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283           29 AETLDVMDKMKQMGVLIGKG--GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK   82 (82)
Q Consensus        29 ~~~~~v~~~~~~~Gll~~~~--g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~   82 (82)
                      ..+.++...+.++|+-+...  +.....|-    +++.++|.++.+..|.+.+-++
T Consensus        16 gi~arif~~L~~~~InV~mIsq~~Se~~Is----~~V~~~d~~~Av~~Lh~~F~~e   67 (67)
T d2hmfa2          16 GIAGKIFTAVSESGANIKMIAQGSSEVNIS----FVIDEKDLLNCVRKLHEKFIEK   67 (67)
T ss_dssp             THHHHHHHHHHHTTCCCCEEEESSCSSEEE----EEEEGGGHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHcCCChHHeeecCccceEE----EEEeHHHHHHHHHHHHHHHhcC
Confidence            47889999999998865432  22333443    6789999999999999887543

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.60  E-value=1.7  Score=26.59  Aligned_cols=46  Identities=15%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             HHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283           34 VMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK   81 (82)
Q Consensus        34 v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~   81 (82)
                      +...+...|+.....+ .....++. .+..|++|+|+++++|++.+++
T Consensus       317 ~~~~l~~~~~~~~~~g-~~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         317 LYRELKSRKIHGIKPG-LTRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             HHHHHHHTTEECSCTT-CCSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceecCC-CcceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence            3345556666543333 23455554 5668999999999999998864