Citrus Sinensis ID: 043341
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | 2.2.26 [Sep-21-2011] | |||||||
| O13775 | 716 | Probable glutamate--tRNA | yes | no | 0.825 | 0.874 | 0.480 | 1e-179 | |
| P46655 | 708 | Glutamate--tRNA ligase, c | yes | no | 0.806 | 0.862 | 0.482 | 1e-173 | |
| Q8CGC7 | 1512 | Bifunctional glutamate/pr | yes | no | 0.912 | 0.457 | 0.428 | 1e-170 | |
| P07814 | 1512 | Bifunctional glutamate/pr | yes | no | 0.897 | 0.449 | 0.423 | 1e-167 | |
| P28668 | 1714 | Bifunctional glutamate/pr | yes | no | 0.922 | 0.407 | 0.422 | 1e-166 | |
| Q54KB8 | 764 | Probable glutamate--tRNA | yes | no | 0.918 | 0.910 | 0.415 | 1e-159 | |
| Q8SSE4 | 642 | Probable glutamate--tRNA | yes | no | 0.691 | 0.816 | 0.413 | 1e-118 | |
| C4VBI7 | 614 | Probable glutamate--tRNA | N/A | no | 0.625 | 0.771 | 0.419 | 1e-101 | |
| A9CSZ1 | 631 | Probable glutamate--tRNA | N/A | no | 0.647 | 0.778 | 0.405 | 1e-101 | |
| A4W846 | 555 | Glutamine--tRNA ligase OS | yes | no | 0.670 | 0.915 | 0.348 | 2e-79 |
| >sp|O13775|SYEC_SCHPO Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/655 (48%), Positives = 430/655 (65%), Gaps = 29/655 (4%)
Query: 101 FYGQNAYEAGEIDEWLDYTPVFSSGSEF---ENACTYVDKYLERRTFVVGHSLSIVDIAI 157
F G+N + ++ W++ + F + +D +L R+ VG+SL+ D +I
Sbjct: 79 FIGEN--DRSLVESWVETASALAGNHNFLELSSLLAQLDDHLIMRSLFVGYSLTSADFSI 136
Query: 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSK 217
W AL ++R + +Y NL RW+ ++ DS + V+ T
Sbjct: 137 WGALKSNNMAAGAVR-TGQYFNLARWY-----KFMDSQNAVSVTM--------------- 175
Query: 218 EQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFA 277
E+ ++S+K K+ S P++E+ LPDA GKV RF PEPSGYLHIGH+KAALLNQYFA
Sbjct: 176 EEFTKAVNISKKQKS-SGPNYEIGLPDAIDGKVVTRFPPEPSGYLHIGHAKAALLNQYFA 234
Query: 278 QRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIR 337
+Y G+LIVRFDDTNP+KE++EF D +L+D+ LGIK + VTYTSDY + + ++I+
Sbjct: 235 NKYHGKLIVRFDDTNPSKENSEFQDAILEDVALLGIKPDVVTYTSDYLDTIHQYCVDMIK 294
Query: 338 QGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ 397
G+AY DDT E M+ ER +GI SK R+ IEE++++ EM GS+ GL+ C+R K+ +
Sbjct: 295 SGQAYADDTDVETMRHERTEGIPSKHRDRPIEESLEILSEMDKGSDVGLKNCIRAKISYE 354
Query: 398 DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQ 457
+PNK++RDPV YRCN +PHHR G+KY+ YPTYDFACP VD+ EG+THALR++EY DRN
Sbjct: 355 NPNKAMRDPVIYRCNLLPHHRTGTKYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRNPL 414
Query: 458 YYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
Y + + + +RK+H++EFSR+N V TLLSKRKL V +G V GWDDPRFPTV+G+ RRG
Sbjct: 415 YQWMIKAMNLRKIHVWEFSRMNFVRTLLSKRKLTEIVDHGLVWGWDDPRFPTVRGVRRRG 474
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
+ +EAL Q+I+ QG SKN+ ++W W NKKIIDPV PRHTAV V T+ +GP
Sbjct: 475 MTIEALQQYIVSQGPSKNILTLDWTSFWATNKKIIDPVAPRHTAVESGDVVKATIVNGPA 534
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQ 637
P+ PRHKK G K + + I I+ ADAQ +EE+TLMDWGNA V+EI+RD
Sbjct: 535 APYAEDRPRHKKNPELGNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYVREINRDA 594
Query: 638 DGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVL 697
G VT L LHL+G K T+ K+TWL +T + + LV FDYLITK KLEEGE++ D L
Sbjct: 595 SGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKDKLEEGENYKDFL 654
Query: 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
P T F + D ++NLK+G+I+Q+ERKGY+ DVPF + VLF IPDG+
Sbjct: 655 TPQTEFHSPVFADVGIKNLKKGDIIQVERKGYYIVDVPFDGTQ--AVLFNIPDGK 707
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Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7 |
| >sp|P46655|SYEC_YEAST Glutamate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GUS1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 306/634 (48%), Positives = 424/634 (66%), Gaps = 23/634 (3%)
Query: 121 VFSSGSEFENACTYVDKYLERRTFVVGH-SLSIVDIAIWSALAGTGQRWDSLRKSKKYQN 179
V + ++ + +D L RTF++G S D+A W AL G S+ K+K N
Sbjct: 87 VIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGM-CGSIIKNKVDVN 145
Query: 180 LVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFE 239
+ RW+ L +D + G +KS + +V +K K + +FE
Sbjct: 146 VSRWYTLLE------MDPIF-------GEAHDFLSKSLLELKKSANVGKK-KETHKANFE 191
Query: 240 VDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNE 299
+DLPDA++G+V RF PEPSGYLHIGH+KAALLNQYFAQ Y+G+LI+RFDDTNP+KE E
Sbjct: 192 IDLPDAKMGEVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYKGKLIIRFDDTNPSKEKEE 251
Query: 300 FVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGI 359
F D++L+D++ LGIK + +TY+SDYF ++ + +I+ GKAY DDTP E+M++ERMDG+
Sbjct: 252 FQDSILEDLDLLGIKGDRITYSSDYFQEMYDYCVQMIKDGKAYCDDTPTEKMREERMDGV 311
Query: 360 ESKCRNNSIEENMKLW-KEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHR 418
S R+ S+EEN++++ +EM G+E GL+ C+R K+D + NK+LRDPV YRCN PHHR
Sbjct: 312 ASARRDRSVEENLRIFTEEMKNGTEEGLKNCVRAKIDYKALNKTLRDPVIYRCNLTPHHR 371
Query: 419 IGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL 478
GS +K+YPTYDF P VDA EG+THALR+ EY DRNAQY + + L +RKVHI++F+R+
Sbjct: 372 TGSTWKIYPTYDFCVPIVDAIEGVTHALRTIEYRDRNAQYDWMLQALRLRKVHIWDFARI 431
Query: 479 NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNL 538
N V TLLSKRKL W V V WDDPRFPTV+G+ RRG+ VE L F+L QG S+N+
Sbjct: 432 NFVRTLLSKRKLQWMVDKDLVGNWDDPRFPTVRGVRRRGMTVEGLRNFVLSQGPSRNVIN 491
Query: 539 MEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKAT 598
+EW+ +W NKK+IDP+ PRHTA++ ++ L ++ P +P + + P+HKK GEK
Sbjct: 492 LEWNLIWAFNKKVIDPIAPRHTAIVNPVKIHLEGSEAPQEPKIEMKPKHKKNPAVGEKKV 551
Query: 599 TYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTK 658
Y K I +D DA +I+ +EE+TLMDWGN I+ + ++ DG++ L+LEG K TK
Sbjct: 552 IYYKDIVVDKDDADVINVDEEVTLMDWGNVIITK--KNDDGSMV---AKLNLEGDFKKTK 606
Query: 659 LKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKR 718
KLTWL +T ++V + LV FD+LITK +LEE E F D L P T F T AI D N++++K
Sbjct: 607 HKLTWLADTKDVVPVDLVDFDHLITKDRLEEDESFEDFLTPQTEFHTDAIADLNVKDMKI 666
Query: 719 GEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
G+I+Q ERKGY+R D + KP V F IPDG+
Sbjct: 667 GDIIQFERKGYYRLDA-LPKDGKPYVFFTIPDGK 699
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Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q8CGC7|SYEP_MOUSE Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs PE=1 SV=4 | Back alignment and function description |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 311/726 (42%), Positives = 447/726 (61%), Gaps = 34/726 (4%)
Query: 39 MEIKVLSFPADSPPL-LVIAAAKLAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGR 97
M L+ A +PPL ++A + G + G S +LRY+ R
Sbjct: 1 MAALCLTVNAGNPPLEALLAVEHVKGDVSISVEEGKENLLRVSETVAFTDVNSILRYLAR 60
Query: 98 VGN---FYGQNAYEAGEIDEWLDYTPV-FSSGSEFENACTYVDKYLERRTFVVGHSLSIV 153
+ YG N E EID WL+++ SS +A ++ L RT++VG+SL++
Sbjct: 61 IATTSGLYGTNLMEHTEIDHWLEFSATKLSSCDRLTSAINELNHCLSLRTYLVGNSLTLA 120
Query: 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTA 213
D+ +W+ L G+ + L+++K ++ RWF L A+ + NR T
Sbjct: 121 DLCVWATLKGSAAWQEHLKQNKTLVHVKRWFGFLEAQQAFRSVGTKWDVSGNRA----TV 176
Query: 214 AKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLN 273
A K+Q DV GK V+LP AE+GKV +RF PE SGYLHIGH+KAALLN
Sbjct: 177 APDKKQ-----DV---GKF-------VELPGAEMGKVTVRFPPEASGYLHIGHAKAALLN 221
Query: 274 QYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAE 333
Q++ ++G+LI+RFDDTNP KE +F +L+D+ L IK + TYTSD+F +M+ AE
Sbjct: 222 QHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAE 281
Query: 334 NLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGK 393
LI++GKAYVDDTP EQM+ ER ESK R NS+E+N+++W+EM GS+ G CCLR K
Sbjct: 282 KLIQEGKAYVDDTPAEQMKAEREQRTESKHRKNSVEKNLQMWEEMKKGSQFGQSCCLRAK 341
Query: 394 LDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD 453
+DM N +RDP YRC PH R G+KY VYPTYDFACP VD+ EG+THALR++EYHD
Sbjct: 342 IDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHD 401
Query: 454 RNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGI 513
R+ Q+Y I E LG+RK +I+E+SRLN+ T+LSKRKL WFV G VDGWDDPRFPTV+G+
Sbjct: 402 RDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGV 461
Query: 514 VRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLT 573
+RRG+ VE L QFI QG+S+++ MEWDK+W NKK+IDPV PR+ A+++ V + +
Sbjct: 462 LRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVVPVNVL 521
Query: 574 DGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEI 633
D ++ ++ + RH K G K Y+ +++I+ ADA+ S E +T ++WGN + +I
Sbjct: 522 DAQEE--MKEVARHPKNPDVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNINITKI 579
Query: 634 SRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNL--TLVGFDYLITKKKLEEGE 691
++ DG +T L L+LE K+TWL E+ +++ V +++LITK L + E
Sbjct: 580 HKNADGKITSLDAKLNLENKDYKKTTKITWLAESTHALSIPAVCVTYEHLITKPVLGKDE 639
Query: 692 DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSS------KPVVL 745
DF +N ++ E +GD +++LK+G+I+QL+R+G+F CD P+ S P +L
Sbjct: 640 DFKQYINKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCREAPCIL 699
Query: 746 FAIPDG 751
IPDG
Sbjct: 700 IYIPDG 705
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Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 308/728 (42%), Positives = 442/728 (60%), Gaps = 48/728 (6%)
Query: 44 LSFPADSPPLLVIAAAKLA--GITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGN- 100
L+ + PPL + A + ++I E G S +LRY+ RV
Sbjct: 6 LTVNSGDPPLGALLAVEHVKDDVSISVE-EGKENILHVSENVIFTDVNSILRYLARVATT 64
Query: 101 --FYGQNAYEAGEIDEWLDYTPV-FSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAI 157
YG N E EID WL+++ SS F + ++ L RT++VG+SLS+ D+ +
Sbjct: 65 AGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLADLCV 124
Query: 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSK 217
W+ L G + L++ K ++ RWF L A+ ++
Sbjct: 125 WATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQ------------------------QAF 160
Query: 218 EQQGVKGDVSEKGKAGSRPSFE------VDLPDAEIGKVRLRFAPEPSGYLHIGHSKAAL 271
+ G K DVS KA P + V+LP AE+GKV +RF PE SGYLHIGH+KAAL
Sbjct: 161 QSVGTKWDVS-TTKARVAPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAAL 219
Query: 272 LNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEM 331
LNQ++ ++G+LI+RFDDTNP KE +F +L+D+ L IK + TYTSD+F +M+
Sbjct: 220 LNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKY 279
Query: 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391
AE LI++GKAYVDDTP EQM+ ER I+SK R N IE+N+++W+EM GS+ G CCLR
Sbjct: 280 AEKLIQEGKAYVDDTPAEQMKAEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLR 339
Query: 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
K+DM N +RDP YRC PH R G+KY VYPTYDFACP VD+ EG+THALR++EY
Sbjct: 340 AKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEY 399
Query: 452 HDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQ 511
HDR+ Q+Y I E LG+RK +I+E+SRLN+ T+LSKRKL WFV G VDGWDDPRFPTV+
Sbjct: 400 HDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVR 459
Query: 512 GIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLT 571
G++RRG+ VE L QFI QG+S+++ MEWDK+W NKK+IDPV PR+ A+++ + +
Sbjct: 460 GVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVN 519
Query: 572 LTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVK 631
+ + ++ ++ + +H K G K Y+ +++I+ ADA+ S E +T ++WGN +
Sbjct: 520 VPEAQEE--MKEVAKHPKNPEVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNIT 577
Query: 632 EISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNEL--VNLTLVGFDYLITKKKLEE 689
+I ++ DG + L L+LE K+TWL ET + + V +++LITK L +
Sbjct: 578 KIHKNADGKIISLDAKLNLENKDYKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGK 637
Query: 690 GEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSS------KPV 743
EDF +N ++ E +GD +++LK+G+I+QL+R+G+F CD P+ S P
Sbjct: 638 DEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPC 697
Query: 744 VLFAIPDG 751
VL IPDG
Sbjct: 698 VLIYIPDG 705
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Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2 | Back alignment and function description |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/736 (42%), Positives = 454/736 (61%), Gaps = 37/736 (5%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTET--SGSAPTFSFSNGSKL--QGTYVLLRY 94
M IK L ++PP+ +A A L T+P E S + F + L +LR
Sbjct: 1 MSIK-LKANLNNPPISGLATAHLINGTVPVEIVWSKEETSLQFPDNRLLVCHSNNDVLRA 59
Query: 95 IGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLS 151
+ R YG+ A E +ID WL ++ + + A +++DK + T++V + L+
Sbjct: 60 LARAAPDYKLYGETAIERTQIDHWLSFS--LTCEDDISWALSFLDKSIAPVTYLVANKLT 117
Query: 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKP 211
I D A+++ + R++ L Q++ RW++ ++A+ L + + K
Sbjct: 118 IADFALFNEMHS---RYEFLAAKGIPQHVQRWYDLITAQ---PLIQKVLQSLPEDAKVKR 171
Query: 212 TAAKSKEQQGVK-GDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAA 270
+ SKEQ K G+ ++GK VDLP AE+GKV +RF PE SGYLHIGH+KAA
Sbjct: 172 SPQSSKEQTPAKTGERKQEGKF-------VDLPGAEMGKVVVRFPPEASGYLHIGHAKAA 224
Query: 271 LLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330
LLNQY+A +QG LI+RFDDTNPAKE+ EF + +L D+E L IK + T+TS+YF +++
Sbjct: 225 LLNQYYALAFQGTLIMRFDDTNPAKETVEFENVILGDLEQLQIKPDVFTHTSNYFDLMLD 284
Query: 331 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390
LI++ KAYVDDTP EQM+ ER +ES R+NS+E+N+ LW+EM+ GSE+G + C+
Sbjct: 285 YCVRLIKESKAYVDDTPPEQMKLEREQRVESANRSNSVEKNLSLWEEMVKGSEKGQKYCV 344
Query: 391 RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
R K+DM PN +RDP YRC PH R G+KYKVYPTYDFACP VDA E +TH LR++E
Sbjct: 345 RAKIDMSSPNGCMRDPTIYRCKNEPHPRTGTKYKVYPTYDFACPIVDAIENVTHTLRTTE 404
Query: 451 YHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
YHDR+ Q+Y + L +RK +I+ +SRLNM T+LSKRKL WFV +G VDGWDDPRFPTV
Sbjct: 405 YHDRDDQFYWFIDALKLRKPYIWSYSRLNMTNTVLSKRKLTWFVDSGLVDGWDDPRFPTV 464
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLL 570
+GI+RRG+ VE L +FI+ QG+SK++ M WDK+W NKK+IDP+ PR+TA+ +++RV++
Sbjct: 465 RGIIRRGMTVEGLKEFIIAQGSSKSVVFMNWDKIWAFNKKVIDPIAPRYTALEKEKRVIV 524
Query: 571 TLTDGPDKPFVRI-IPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAI 629
+ RI + H K E G+K RI+ID+ DA+ + E T ++WGN +
Sbjct: 525 NVAGA---KVERIQVSVHPKDESLGKKTVLLGPRIYIDYVDAEALKEGENATFINWGNIL 581
Query: 630 VKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLP---ETNELVNLTLVGFDYLITKKK 686
++++++D GN+T + L+LE LKLTWL + + V FD +I+K
Sbjct: 582 IRKVNKDASGNITSVDAALNLENKDFKKTLKLTWLAVEDDPSAYPPTFCVYFDNIISKAV 641
Query: 687 LEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVP------FTRSS 740
L + EDF + TR E +GD ++ K+G+I+QL+R+G+F+ DV +T
Sbjct: 642 LGKDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPPSGYTNVP 701
Query: 741 KPVVLFAIPDGRQQAV 756
P+VLF+IPDG + V
Sbjct: 702 SPIVLFSIPDGHTKDV 717
|
Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q54KB8|SYEC_DICDI Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=gluS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 298/717 (41%), Positives = 438/717 (61%), Gaps = 21/717 (2%)
Query: 48 ADSPPLLVIAAAKLAGITIPTETSGSAPTFSF-SNGSKLQGTYVLLRYIGRVG---NFYG 103
A P + +I + + G+ I + FS L+G+YV+ +Y+ R + YG
Sbjct: 19 ATFPLVAIITSKVVGGVKIVGRKGLDSTEFSIVGTQDSLKGSYVIAKYLARTTPSLSLYG 78
Query: 104 QNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163
+NA A +IDE++D S +F +++YL R F++G +L++ DI +++ +
Sbjct: 79 ENALSASKIDEFIDKFAHLKS-EKFNEFLKEMNEYLTLRAFLIGFNLTLADIVLFARIKM 137
Query: 164 TGQRWDSLRK-SKKYQNLVRWFNSLS-----AEYSDSLDEVTATYVSNRGLGKPTAAKSK 217
+ + + K K +L RW+ LS E ++ + T S + + TAA ++
Sbjct: 138 VKEIQEEINKLGKTIPHLNRWYGYLSQLESFVEADNAFNGKKETKASGKAGAEGTAATTE 197
Query: 218 EQQGVKGDVSEKGKAGSRPSFE-VDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYF 276
+ +KG G +FE ++LP GKV RF PEPSGY+HIGH KAA++N Y+
Sbjct: 198 KV------APQKGAMGWVGNFEALNLPGLVEGKVVTRFPPEPSGYMHIGHCKAAIINNYY 251
Query: 277 AQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLI 336
A++Y G++I+RFDDTNP+KE E+V+N++KDI LGIKYE +T+TSDYF + + A +I
Sbjct: 252 AEKYNGKIIIRFDDTNPSKEKEEYVENIIKDINNLGIKYEKITHTSDYFDLIHDYAIQMI 311
Query: 337 RQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396
++G AY DDTP+ +M +ER + IES RNNS+E+N++++ EM +E+G++C LR KLDM
Sbjct: 312 KEGIAYCDDTPQVKMSEERDNAIESVHRNNSVEKNLEMFDEMKKATEQGVKCVLRAKLDM 371
Query: 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456
+K+ RDP YRCN PHHR G KYKVYP YDFACP VD+ EGITHALRS+EY+++
Sbjct: 372 AHIDKAFRDPAIYRCNSTPHHRTGDKYKVYPLYDFACPIVDSVEGITHALRSNEYNNKRN 431
Query: 457 QYYRIQEDLGVR-KVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVR 515
Y E L + K +I ++SRL+ LLSKRKL FV G V GW DPR PT+QGI R
Sbjct: 432 LYNHYLEILHLENKPYISDYSRLSFFNVLLSKRKLQHFVDTGLVSGWTDPRLPTLQGITR 491
Query: 516 RGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDG 575
RGL V AL +FIL QGAS ++ KL+ NK +++P CPR+TA+ + V TL++G
Sbjct: 492 RGLTVAALKEFILSQGASAANTTLDLGKLFVGNKAVLEPTCPRYTAIAKATAVKFTLSNG 551
Query: 576 PDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISR 635
P P V+ ++ K G K T++ + ++ D I EE+TLM+WGNAIV+ + R
Sbjct: 552 PTLPEVKDCLKYAKDPSMGTKKVTFSNNLLLEGDDCNQIKEGEEVTLMNWGNAIVETLQR 611
Query: 636 DQDGNVTQLSGFLHLEGSVKNTKLKLTWL-PETNELVNLTLVGFDYLITKKKLEEGEDFL 694
+++G+V ++G LHLEG VK T KL+WL + + V + L +DY+ITK KLE+G+D
Sbjct: 612 NENGDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYIITKPKLEDGDDLD 671
Query: 695 DVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDG 751
N ++FE A D N+ LK + +Q ER+G+F D KP +L IP G
Sbjct: 672 TFTNKNSKFEIEAFTDENILTLKLNDKIQFERRGFFNVD-QVGDGVKPYILIYIPSG 727
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q8SSE4|SYEC_ENCCU Probable glutamate--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_1210 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 341/559 (61%), Gaps = 35/559 (6%)
Query: 191 YSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKV 250
+ D+ + + +N+ L K A S+++QG + E+ P V
Sbjct: 108 FPDTCKMYSEQFKANKPLLKEFNAGSRKEQG---------------NLEIGEPSE---NV 149
Query: 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIET 310
RF PEP+G LHIGH++AALLN YFA + G+L+VRFDDTNP KE F +L D+
Sbjct: 150 VTRFPPEPNGRLHIGHARAALLNWYFASKGNGRLLVRFDDTNPEKEEERFERGILSDLSL 209
Query: 311 LGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEE 370
LGI T+++TSDYF ++++ LI +GKAY D+TP+E M+ ER G+ES+CR+ +EE
Sbjct: 210 LGINEYTLSHTSDYFDKIIDLGVFLIGEGKAYADNTPQEVMRDERGRGVESRCRSMDVEE 269
Query: 371 NMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYD 430
+ +++KEM G+ G CLR K+DM NK++RDPV +R N PHHR G KYKVYPTYD
Sbjct: 270 SKRIFKEMARGNASGY--CLRAKIDMSSSNKAMRDPVIFRVNESPHHRTGDKYKVYPTYD 327
Query: 431 FACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYTLLSKRK 489
FACP VD+ EGIT +LR++EY DRN QYY ++L +R + I++FSRLN T+LSKRK
Sbjct: 328 FACPIVDSLEGITLSLRANEYRDRNQQYYWFIDNLRLRNRPKIHDFSRLNFENTVLSKRK 387
Query: 490 LLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549
L ++V NG V GWDDPR T+ GI R G+ +EAL ++IL QG S+ + WDK+W IN+
Sbjct: 388 LKYYVDNGFVSGWDDPRLATIAGIKRLGMNMEALREYILMQGVSQKTCTISWDKVWAINR 447
Query: 550 KIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHA 609
K IDPV R+ V + V +++ + + + +P+HKK G K Y+ +I +
Sbjct: 448 KKIDPVSARYFCVQQRDAVEVSIDNTSE--YTMDVPKHKKNGDLGTKEVFYSSQILLSQE 505
Query: 610 DAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNE 669
D +++ NEE TLM+WGNAIVK + ++G VT++ L+ +G K TK K++W+ +
Sbjct: 506 DGRVLQDNEEFTLMNWGNAIVKSKTV-ENGTVTKMEVSLNPDGDFKLTKNKMSWVSKRGS 564
Query: 670 LVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGY 729
V + L + L+ E+ ED N + + +S + N++ GE++Q ER G+
Sbjct: 565 -VTVELAEYGNLMND---EDTEDLALRFNRNSVKKEYWYAESAIINVREGEVIQFERNGF 620
Query: 730 FRCD-------VPFTRSSK 741
+ CD +PFT+ +
Sbjct: 621 YYCDGFLVFNLLPFTKQKR 639
|
Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|C4VBI7|SYEC_NOSCE Probable glutamate--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_102160 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/498 (41%), Positives = 302/498 (60%), Gaps = 24/498 (4%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAPEPSG LHIGH KA L+N A++ G L++RFDDTNP K ++ +L+D++TLG
Sbjct: 130 RFAPEPSGCLHIGHLKALLVNYNLAEKSNGTLLLRFDDTNPVKNYEKYEKEILRDLDTLG 189
Query: 313 IKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENM 372
I ++++SDYF L++ A +LI + AYVD+T +E M+ ER +GIESK RN + E++
Sbjct: 190 ITGLKISHSSDYFELLVDEAVSLINKNLAYVDNTDQETMRIERFEGIESKMRNINNSESL 249
Query: 373 KLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFA 432
K++KE++ G G CLR K+DM +PNKS+RDPV YR + H R YK +PTYDF
Sbjct: 250 KIFKELLQGRAPGY--CLRAKIDMSNPNKSMRDPVIYRASDKMHGRC-KLYKAFPTYDFV 306
Query: 433 CPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYTLLSKRKLL 491
CP VD+ EG+T R++EY DRN QY E+L + K +FS+LN+ T+LSKRK+
Sbjct: 307 CPIVDSIEGVTVVCRANEYKDRNEQYKWFLENLELENKPEFNDFSKLNLEDTVLSKRKID 366
Query: 492 WFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551
+ + V GWDDPR T+QGI R G+ + AL +I QGAS N++ WDK+W +NKK+
Sbjct: 367 KLISDSLVTGWDDPRLATIQGIKRLGMHMTALKDYINLQGASNKTNVISWDKIWAMNKKV 426
Query: 552 IDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADA 611
IDP+ PR AV + V + +T+ + + IP +KK G K ++ + D
Sbjct: 427 IDPLSPRFMAVEKINCVRVFITNFEGLKYTKNIPLNKKNTSLGSKDVLFSDTLLFSQEDG 486
Query: 612 QLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELV 671
++ NEE TLM+WGNAIV E ++ VT+L LHLEG K+T K++W+ E+
Sbjct: 487 FVLKENEEFTLMNWGNAIV-EKKVVENSIVTELYIKLHLEGDYKSTTNKISWVSESGA-- 543
Query: 672 NLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG-EILQLERKGYF 730
+T G +Y KL E+F N ++ + +S++ NL + +Q ER G+F
Sbjct: 544 -VTATGIEY----GKLLVNEEF----NINSKIDKQYYVESSITNLSTDMKHVQFERIGFF 594
Query: 731 RCD-------VPFTRSSK 741
CD VPFT+ +
Sbjct: 595 YCDSPCVFHLVPFTKQKR 612
|
Nosema ceranae (strain BRL01) (taxid: 578460) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|A9CSZ1|SYEC_ENTBH Probable glutamate--tRNA ligase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_22577 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/511 (40%), Positives = 311/511 (60%), Gaps = 20/511 (3%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
G V RF PEPSG+LHIGH KAALLN A+ G+L++RFDDTNP KE + + +++D
Sbjct: 134 GNVVTRFPPEPSGFLHIGHIKAALLNDLMAK--NGKLLIRFDDTNPIKEEKMYENVIIED 191
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+ TLGIK T+ +SD+F L A LI+ G AY D+T + QM++ER GI SK RN
Sbjct: 192 LHTLGIKNYTIVRSSDHFDSLYNYAIQLIQLGLAYCDNTDQLQMREERTKGIPSKNRNTD 251
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
IE N+ ++ +M +G+ L+ CLR K+D + NK+LRDPV YR H+ +KYK+YP
Sbjct: 252 IETNLSIFSKMSSGN--CLDYCLRAKIDYTNLNKALRDPVIYRHIEKEHNITKNKYKIYP 309
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLNMVYTLLS 486
TYDFACP +D+ +G+T ALR++EY DRN QYY E L + K IY+FSRLN T+LS
Sbjct: 310 TYDFACPIIDSLDGVTLALRTNEYRDRNEQYYWFLEKLNLPNKPKIYDFSRLNFENTVLS 369
Query: 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWT 546
KR++ ++V N V GWDDPR T++GI+R G+ ++ L ++I+ QG+S+ +++ WDK+W+
Sbjct: 370 KRQMKFYVDNHFVSGWDDPRLSTLRGILRLGMDIDTLKEYIINQGSSQKSSVISWDKVWS 429
Query: 547 INKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFV---RIIPRHKKYEGAGEKATTYTKR 603
+NKK ID R++A+ + V + D + + IP+ KK G K +
Sbjct: 430 LNKKNIDHKSARYSAIPKLYCVECLILDKNNNEIITKTEDIPKFKKNLSLGNKTIIKSSH 489
Query: 604 IWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTW 663
I I DA +++ NEE TLM+WGN VKE + +G + ++ +L G VK TK KLTW
Sbjct: 490 ILISQEDANILNNNEEFTLMNWGNMKVKE-KQIVNGIIIKIILEENLAGDVKTTKNKLTW 548
Query: 664 LPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQ 723
+ + N ++ ++ +D L K ++ + N ++ E +G+ + ++ +Q
Sbjct: 549 VNKEN-IIEFKILEYDTLQNDK---NTDNLAEKFNTNSKKEEIWLGEKALISVSPKTYIQ 604
Query: 724 LERKGYFRCDVPFTRSSKPVVLFAIPDGRQQ 754
+ER G+F CD KP+ IP +Q+
Sbjct: 605 IERIGFFICD-------KPLEFILIPYTKQK 628
|
Enterocytozoon bieneusi (strain H348) (taxid: 481877) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|A4W846|SYQ_ENT38 Glutamine--tRNA ligase OS=Enterobacter sp. (strain 638) GN=glnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 290/542 (53%), Gaps = 34/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RPS + DL + V RF PEP+GYLHIGH+K+ LN AQ YQGQ
Sbjct: 3 EAEARPSNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQC 62
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D++ LG + + Y+SDYF L A LI +G AYV
Sbjct: 63 NLRFDDTNPVKEDIEYVESIKNDVQWLGFNWSGDICYSSDYFDQLFAYAVELINKGLAYV 122
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ +++++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 123 DELSADEIREYRGSLTAPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 182
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y
Sbjct: 183 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYD 242
Query: 460 RIQEDLGVRKVH--IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 243 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 301
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +FI G +K N +E L + ++ ++ PR AVI+ ++++ +
Sbjct: 302 YSASSIREFIKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGE 361
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
V +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 362 SELV-TMPNHPSKPEMGSREVPFSAEIWIDRADFRE-EANKQYKRLVMGKEVRLRNAYVI 419
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + E K+ K + W+ + L V + L +D L
Sbjct: 420 KAERVEKDTEGNITTIFCSYDAETLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 477
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ EDFL +NP + + +++N + G+ Q ER+GYF D + ++K
Sbjct: 478 FSVPNPGAAEDFLATINPESLLIKQGYAEPSLKNAETGKAYQFEREGYFCLDSRYATATK 537
Query: 742 PV 743
V
Sbjct: 538 LV 539
|
Enterobacter sp. (strain 638) (taxid: 399742) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | ||||||
| 255543064 | 728 | glutamyl-tRNA synthetase, cytoplasmic, p | 0.941 | 0.980 | 0.809 | 0.0 | |
| 224124284 | 728 | predicted protein [Populus trichocarpa] | 0.949 | 0.989 | 0.813 | 0.0 | |
| 359487602 | 736 | PREDICTED: probable glutamyl-tRNA synthe | 0.943 | 0.971 | 0.812 | 0.0 | |
| 147838425 | 736 | hypothetical protein VITISV_020288 [Viti | 0.943 | 0.971 | 0.811 | 0.0 | |
| 449435593 | 729 | PREDICTED: probable glutamate--tRNA liga | 0.948 | 0.986 | 0.802 | 0.0 | |
| 356534931 | 733 | PREDICTED: probable glutamyl-tRNA synthe | 0.949 | 0.982 | 0.788 | 0.0 | |
| 356575275 | 732 | PREDICTED: probable glutamyl-tRNA synthe | 0.948 | 0.982 | 0.788 | 0.0 | |
| 357441991 | 735 | Bifunctional aminoacyl-tRNA synthetase [ | 0.952 | 0.982 | 0.778 | 0.0 | |
| 449525786 | 682 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.889 | 0.988 | 0.815 | 0.0 | |
| 297808683 | 719 | hypothetical protein ARALYDRAFT_489491 [ | 0.926 | 0.976 | 0.754 | 0.0 |
| >gi|255543064|ref|XP_002512595.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis] gi|223548556|gb|EEF50047.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/724 (80%), Positives = 655/724 (90%), Gaps = 10/724 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTET----SGSAPTFSFSNGSKLQGTYVLLRY 94
MEIK SF ADSPPL VI+AAK+A + +PT T S S PT FS+G+KL+GT+VLLRY
Sbjct: 1 MEIKEFSFAADSPPLSVISAAKVAAVCLPTPTILTDSSSLPTIVFSDGTKLRGTFVLLRY 60
Query: 95 IGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLS 151
IGR+ NFYG +A ++ +IDEWLDY+ + SSGSEFE+ACTY+D YLE+RTF+V + LS
Sbjct: 61 IGRIASLPNFYGHDACQSSQIDEWLDYSSILSSGSEFESACTYIDSYLEKRTFLVAYCLS 120
Query: 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKP 211
I D+AIWS LAG+GQRW+SLRKSKKYQNLVRWFNS+SAEYSD+L EVT+TYV RG GKP
Sbjct: 121 IADMAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDALIEVTSTYVGKRGAGKP 180
Query: 212 TAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAAL 271
AKSKEQQ V GD+SEKGKAGS+ + EVDLPDAEIGKV LRFAPEPSGYLHIGH+KAAL
Sbjct: 181 VTAKSKEQQFVNGDISEKGKAGSKTA-EVDLPDAEIGKVCLRFAPEPSGYLHIGHAKAAL 239
Query: 272 LNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEM 331
LNQYFAQRYQG+LI+RFDDTNPAKES+EFV+NLLKD+ETLG+KY+ VT+TSDYF +LM+
Sbjct: 240 LNQYFAQRYQGELILRFDDTNPAKESSEFVENLLKDVETLGVKYKKVTHTSDYFDELMKK 299
Query: 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391
AE LIRQGKAY+DDTPREQMQKERMDGIESKCRNN++EEN+KLWKEMI GSERGL+CCLR
Sbjct: 300 AEELIRQGKAYIDDTPREQMQKERMDGIESKCRNNNVEENLKLWKEMIVGSERGLQCCLR 359
Query: 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
GKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKY +YPTYDFACP+VDA EGITHALRSSEY
Sbjct: 360 GKLDMQDPNKSLRDPVYYRCNPVPHHRIGSKYNIYPTYDFACPYVDALEGITHALRSSEY 419
Query: 452 HDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQ 511
HDRNAQY+RIQEDLGVRKVHIYEFSRLNMVYTLLSKR L WFV+NGKVDGWDDPRFPTVQ
Sbjct: 420 HDRNAQYHRIQEDLGVRKVHIYEFSRLNMVYTLLSKRNLRWFVENGKVDGWDDPRFPTVQ 479
Query: 512 GIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLT 571
GIVRRGL +EAL+QFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIE+RRVLLT
Sbjct: 480 GIVRRGLKIEALVQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEERRVLLT 539
Query: 572 LTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISA--NEEITLMDWGNAI 629
LTDGP+ PFVRIIPRHKK+EGAGEKATTYTKRIW+D+ DA I N+E+TLMDWGNAI
Sbjct: 540 LTDGPETPFVRIIPRHKKHEGAGEKATTYTKRIWLDYDDAVCIEKEENKEVTLMDWGNAI 599
Query: 630 VKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEE 689
VKEI +D+ G VT+L G LHLEGSVK TKLKLTWLPET+ELVN++LV FDYLITKKKLEE
Sbjct: 600 VKEIVKDESGKVTELIGALHLEGSVKTTKLKLTWLPETSELVNVSLVEFDYLITKKKLEE 659
Query: 690 GEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIP 749
GE+FLDVLNPCT+ ETAA+GDSNMRNLKRGEILQLERKGYFRCDVPF R SKP+VL AIP
Sbjct: 660 GENFLDVLNPCTKKETAALGDSNMRNLKRGEILQLERKGYFRCDVPFIRPSKPIVLLAIP 719
Query: 750 DGRQ 753
DGRQ
Sbjct: 720 DGRQ 723
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124284|ref|XP_002329985.1| predicted protein [Populus trichocarpa] gi|222871410|gb|EEF08541.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/728 (81%), Positives = 646/728 (88%), Gaps = 8/728 (1%)
Query: 39 MEIKVLSFPADS-PPLLVIAAAKLAGITIP-------TETSGSAPTFSFSNGSKLQGTYV 90
MEIK F ADS PPL VIAAAK+A +T+P S S PTF FSNG KLQGTYV
Sbjct: 1 MEIKDFCFGADSTPPLSVIAAAKVASLTLPPPSTVTNASASASLPTFLFSNGLKLQGTYV 60
Query: 91 LLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSL 150
LLRYIGRV N YGQ+ +E+ +ID+WL+YTPV S GSEFENAC Y+D YL+ RTF+VG+ L
Sbjct: 61 LLRYIGRVANLYGQDPFESSQIDQWLEYTPVLSVGSEFENACNYIDNYLQTRTFLVGYCL 120
Query: 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGK 210
SI DIAIWS LAGTG RW+S RKSKK+ N+VRWFNS+ EYS++L+EV +TYV +G K
Sbjct: 121 SIADIAIWSGLAGTGLRWESCRKSKKFPNIVRWFNSIFDEYSEALNEVMSTYVGKKGSVK 180
Query: 211 PTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAA 270
P AAK K QQ V GD EKGKA S+PS EVDLP+AEIGKV LRFAPEPSGYLHIGHSKAA
Sbjct: 181 PAAAKPKGQQVVGGDNPEKGKASSKPSSEVDLPEAEIGKVCLRFAPEPSGYLHIGHSKAA 240
Query: 271 LLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330
LLNQYFAQRYQG++IVRFDDTNP+KESNEFVDNLLKDIETLGIKYET+T+TSDYFP LME
Sbjct: 241 LLNQYFAQRYQGRMIVRFDDTNPSKESNEFVDNLLKDIETLGIKYETITHTSDYFPQLME 300
Query: 331 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390
MAENLIRQGKAYVDDTPREQMQKERMDGIESKCR+NS+ EN+KLWKEMIAGSERGL+CC+
Sbjct: 301 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRSNSVVENLKLWKEMIAGSERGLQCCV 360
Query: 391 RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
RGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYK+YPTYDFACPFVD+ EGITHALRSSE
Sbjct: 361 RGKLDMQDPNKSLRDPVYYRCNPVPHHRIGSKYKIYPTYDFACPFVDSVEGITHALRSSE 420
Query: 451 YHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
YHDRNAQY RIQ D+G+RKVH+YEFSRLNMVYT+LSKR L WFV+NGKVDGWDD RFPTV
Sbjct: 421 YHDRNAQYDRIQADMGLRKVHLYEFSRLNMVYTILSKRHLRWFVENGKVDGWDDARFPTV 480
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLL 570
QGIVRRGL VEAL+QFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIE+ RV L
Sbjct: 481 QGIVRRGLKVEALVQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEEHRVPL 540
Query: 571 TLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIV 630
TLTDGP +PFVRIIPRHKK+EGAGEKATTYT RIWIDHADA+LIS NEEITLMDWGNAIV
Sbjct: 541 TLTDGPKQPFVRIIPRHKKHEGAGEKATTYTNRIWIDHADAELISVNEEITLMDWGNAIV 600
Query: 631 KEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEG 690
KEI +DQ+GNVT+LSG LHLEGSVK TKLKLTWLP+T+ELVNLTLV FDYLITKKKLEEG
Sbjct: 601 KEIEKDQNGNVTRLSGVLHLEGSVKTTKLKLTWLPDTSELVNLTLVDFDYLITKKKLEEG 660
Query: 691 EDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPD 750
E F DVLNP T+ ETAA GDSNMRNLKRGEILQLERKGYFRCDVPF R SKP+VLFAIPD
Sbjct: 661 ESFQDVLNPFTKKETAAHGDSNMRNLKRGEILQLERKGYFRCDVPFVRPSKPIVLFAIPD 720
Query: 751 GRQQAVFK 758
GRQ K
Sbjct: 721 GRQATSLK 728
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487602|ref|XP_002278667.2| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/736 (81%), Positives = 656/736 (89%), Gaps = 21/736 (2%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFS---NGSKLQGTYV-- 90
ME+K LSFPAD PPL VIA AK+AGI I ++S GS PTF S N KL+GT +
Sbjct: 1 MEVK-LSFPADHPPLYVIATAKVAGIPISEDSSLASGSLPTFLISSNDNEFKLRGTSINA 59
Query: 91 LLRYIGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVG 147
LLRY+GRV NFYGQ+A+E+ +IDEWL+Y P FS+GSEFENAC YVD L +RTF+VG
Sbjct: 60 LLRYLGRVASIPNFYGQDAFESCQIDEWLEYAPTFSTGSEFENACCYVDGILLQRTFLVG 119
Query: 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRG 207
+SLSI DIAIWS LAG+GQRW+SLRKSKKYQNLVRWFNS+ AEY+ L+EVT TYV RG
Sbjct: 120 YSLSIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSIYAEYNTVLNEVTGTYVGKRG 179
Query: 208 LGKPTAAK--SKEQQG-------VKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEP 258
LGKP AK KEQQG V GD +EKGKA S+ + EVDLPDAE+G VRLRFAPEP
Sbjct: 180 LGKPMPAKMKEKEQQGINNHMKNVSGDANEKGKASSKATAEVDLPDAEVGNVRLRFAPEP 239
Query: 259 SGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETV 318
SGYLHIGHSKAAL+NQYFAQRYQGQLIVRFDDTNPAKESNEFV+NLLKDIETLGIKY+ V
Sbjct: 240 SGYLHIGHSKAALMNQYFAQRYQGQLIVRFDDTNPAKESNEFVENLLKDIETLGIKYDAV 299
Query: 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEM 378
TYTSDYFP LMEMAENLI GKAYVDDTPREQMQKERMDGIESKCRNNS ++NM+LWKEM
Sbjct: 300 TYTSDYFPQLMEMAENLICNGKAYVDDTPREQMQKERMDGIESKCRNNSPQKNMELWKEM 359
Query: 379 IAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDA 438
IAGSERGL CCLRGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYK+YPTYDFACPFVDA
Sbjct: 360 IAGSERGLMCCLRGKLDMQDPNKSLRDPVYYRCNPLPHHRIGSKYKLYPTYDFACPFVDA 419
Query: 439 KEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 498
KEGITHALRSSEYHDRNAQY+RIQED+GV+KVHIYEFSRLNMVYTLLSKRKLLWFVQNGK
Sbjct: 420 KEGITHALRSSEYHDRNAQYHRIQEDMGVKKVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 479
Query: 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
VDGWDDPRFPTVQGIVRRGL ++ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR
Sbjct: 480 VDGWDDPRFPTVQGIVRRGLKIDALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 539
Query: 559 HTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANE 618
HTAVI+++RVL+TL DGP+KPFVRIIPRHKK+EGAGEK TTYTKRIWID+ADA IS NE
Sbjct: 540 HTAVIDEKRVLVTLADGPEKPFVRIIPRHKKFEGAGEKCTTYTKRIWIDYADAVSISENE 599
Query: 619 EITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGF 678
EITLMDWGNAI+KEI +DQDGN+TQL G LHLEGSVK TKLKLTWLPET+ELVNL+L+ F
Sbjct: 600 EITLMDWGNAIIKEIRKDQDGNITQLIGVLHLEGSVKATKLKLTWLPETSELVNLSLMEF 659
Query: 679 DYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTR 738
DYLITKKKL+EG+DFLD LNPCT+ ETAA+GDSN+RNLKRGEI+QLERKGY+RCD PF R
Sbjct: 660 DYLITKKKLDEGDDFLDALNPCTKRETAAVGDSNIRNLKRGEIVQLERKGYYRCDAPFIR 719
Query: 739 SSKPVVLFAIPDGRQQ 754
SKPVVLFAIPDGRQQ
Sbjct: 720 PSKPVVLFAIPDGRQQ 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838425|emb|CAN76587.1| hypothetical protein VITISV_020288 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/736 (81%), Positives = 655/736 (88%), Gaps = 21/736 (2%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFS---NGSKLQGTYV-- 90
ME+K LSFPAD PPL VIA AK+AGI I ++S GS PTF S N KL+GT +
Sbjct: 1 MEVK-LSFPADHPPLYVIATAKVAGIPISEDSSLASGSLPTFLISSNDNEFKLRGTSINA 59
Query: 91 LLRYIGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVG 147
LLRY+GRV NFYGQ+A+E+ +IDEWL+Y P FS+GSEFENAC YVD L +RTF+VG
Sbjct: 60 LLRYLGRVASIPNFYGQDAFESCQIDEWLEYAPTFSTGSEFENACCYVDGILLQRTFLVG 119
Query: 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRG 207
+SLSI DIAIWS LAG+GQRW+SLRKSKKYQNLVRWFNS+ AEY+ L+EVT TYV RG
Sbjct: 120 YSLSIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSIYAEYNTVLNEVTGTYVGKRG 179
Query: 208 LGKPTAAK--SKEQQG-------VKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEP 258
LGKP AK KEQQG V GD +EKGKA S+ + EVDLPDAE+G VRLRFAPEP
Sbjct: 180 LGKPMPAKMKEKEQQGINNHMKNVSGDANEKGKASSKATAEVDLPDAEVGNVRLRFAPEP 239
Query: 259 SGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETV 318
SGYLHIGHSKAAL+NQYFAQRY+GQLIVRFDDTNPAKESNEFV+NLLKDIETLGIKY+ V
Sbjct: 240 SGYLHIGHSKAALMNQYFAQRYRGQLIVRFDDTNPAKESNEFVENLLKDIETLGIKYDAV 299
Query: 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEM 378
TYTSDYFP LMEMAENLI GKAYVDDTPREQMQKERMDGIESKCRNNS +ENM+LWKEM
Sbjct: 300 TYTSDYFPQLMEMAENLICNGKAYVDDTPREQMQKERMDGIESKCRNNSPQENMELWKEM 359
Query: 379 IAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDA 438
IAGSERGL CCLRGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYK+YPTYDFACPFVDA
Sbjct: 360 IAGSERGLMCCLRGKLDMQDPNKSLRDPVYYRCNPLPHHRIGSKYKLYPTYDFACPFVDA 419
Query: 439 KEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 498
KEGITHALRSSEYHDRNAQY+RIQED+GV+KVHIYEFSRLNMVYTLLSKRKLLWFVQNGK
Sbjct: 420 KEGITHALRSSEYHDRNAQYHRIQEDMGVKKVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 479
Query: 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
VDGWDDPRFPTVQGIVRRGL ++ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR
Sbjct: 480 VDGWDDPRFPTVQGIVRRGLKIDALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 539
Query: 559 HTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANE 618
HTAVI+++RVL+TL DGP+KPFVRIIPRHKK+EGAGEK TTYTKRIWID+ADA IS NE
Sbjct: 540 HTAVIDEKRVLVTLADGPEKPFVRIIPRHKKFEGAGEKCTTYTKRIWIDYADAVSISENE 599
Query: 619 EITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGF 678
EITLMDWGNAI+KEI +DQDGN+ QL G LHLEGSVK TKLKLTWLPET+ELVNL+L+ F
Sbjct: 600 EITLMDWGNAIIKEIRKDQDGNIMQLIGVLHLEGSVKATKLKLTWLPETSELVNLSLMEF 659
Query: 679 DYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTR 738
DYLITKKKL+EG+DFLD LNPCT+ ETAA+GDSN+RNLKRGEI+QLERKGY+RCD PF R
Sbjct: 660 DYLITKKKLDEGDDFLDALNPCTKRETAAVGDSNIRNLKRGEIVQLERKGYYRCDAPFIR 719
Query: 739 SSKPVVLFAIPDGRQQ 754
SKPVVLFAIPDGRQQ
Sbjct: 720 PSKPVVLFAIPDGRQQ 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435593|ref|XP_004135579.1| PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1235 bits (3196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/730 (80%), Positives = 647/730 (88%), Gaps = 11/730 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYI 95
M+IK+LSFPAD+ P VI AAKLAGIT P+++S S PTF F++G KL G VLLRYI
Sbjct: 1 MDIKLLSFPADNTPFSVIVAAKLAGITFPSDSSLPSASPPTFFFTDGLKLHGASVLLRYI 60
Query: 96 GRVGN---FYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI 152
GRV N FYGQNA+E+ +IDEWL+Y P+ SSGS FENAC+YVDKYLERRTF+VGHSLS+
Sbjct: 61 GRVTNIPNFYGQNAFESSQIDEWLEYAPILSSGSAFENACSYVDKYLERRTFLVGHSLSL 120
Query: 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPT 212
D+AIWS LAGTGQRW+SLRKSKKY NL RWFNSL EYSD LD+V +V RG GK +
Sbjct: 121 ADVAIWSGLAGTGQRWESLRKSKKYLNLQRWFNSLLVEYSDELDDVLTAFVGKRG-GKSS 179
Query: 213 AAKSKEQ----QGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSK 268
K KEQ V D S+KGKAGS+ +FEVDLP+ E GKVRLRFAPEPSGYLHIGHSK
Sbjct: 180 GPKLKEQGLKTNSVNQDASDKGKAGSKSTFEVDLPNVEFGKVRLRFAPEPSGYLHIGHSK 239
Query: 269 AALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDL 328
AALLNQYFAQRY G++I+RFDDTNPAKESNEFV+NLLKDIETLGIKYETVTYTSDYFP L
Sbjct: 240 AALLNQYFAQRYNGEVIIRFDDTNPAKESNEFVENLLKDIETLGIKYETVTYTSDYFPQL 299
Query: 329 MEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388
MEMAENLIRQGKAY+DDTPREQMQKERM+GIESK R+NS EN++LWKEMI G+E+GL C
Sbjct: 300 MEMAENLIRQGKAYIDDTPREQMQKERMEGIESKSRSNSPGENLRLWKEMILGTEQGLLC 359
Query: 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRS 448
CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK+YPTYDFACPFVD+ EGITHALRS
Sbjct: 360 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKIYPTYDFACPFVDSIEGITHALRS 419
Query: 449 SEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFP 508
SEYHDRNAQYYRIQED+G+RKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFP
Sbjct: 420 SEYHDRNAQYYRIQEDMGLRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFP 479
Query: 509 TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRV 568
TVQGIVRRGL +EALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIE+RRV
Sbjct: 480 TVQGIVRRGLKIEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEERRV 539
Query: 569 LLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNA 628
L TL +GP+ PFVRIIP+HKKYEGAGEK+TT+TKRIWID +DAQ I +EEITLMDWGNA
Sbjct: 540 LFTLGNGPEIPFVRIIPKHKKYEGAGEKSTTFTKRIWIDQSDAQCIEVDEEITLMDWGNA 599
Query: 629 IVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLE 688
IVK I +DQDG V QLSG LHLEGSVK TKLK+TWLPE ELV L+L+ +DYLITKKKLE
Sbjct: 600 IVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLMEYDYLITKKKLE 659
Query: 689 EGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748
EGEDFLDVLNPCT+ ET A+GDSNMRN+KRG+ILQLERKGYFRCDVP+ RSSKP+VLFAI
Sbjct: 660 EGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPYVRSSKPIVLFAI 719
Query: 749 PDGRQQAVFK 758
PDGRQQ+ K
Sbjct: 720 PDGRQQSCLK 729
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534931|ref|XP_003536004.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/733 (78%), Positives = 647/733 (88%), Gaps = 13/733 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYI 95
M+IK +F SPPL VIAAAKLAGI+ +TS S P F FS+G KL G Y LLRYI
Sbjct: 1 MDIKTFAFAPSSPPLPVIAAAKLAGISPSIDTSLSPDSPPAFIFSDGLKLHGAYALLRYI 60
Query: 96 GRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI 152
GRV NFYGQNA E+ +IDEWLDY P+ SSG FENAC Y+D+YLE+ TF+VG+SLSI
Sbjct: 61 GRVASLPNFYGQNALESSQIDEWLDYAPILSSGPAFENACKYIDEYLEKCTFLVGYSLSI 120
Query: 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPT 212
D+AIW+ LAG+G+RW+SLRKSKKY NL RWFNS+ AE+ L+EVT+ Y +GLG+PT
Sbjct: 121 ADLAIWAGLAGSGKRWESLRKSKKYPNLARWFNSIVAEHGTVLNEVTSVYAGKKGLGEPT 180
Query: 213 AAKSKEQ-------QGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIG 265
A KSK+Q + V GDVSE K GS+PS E+DLPDAE+GKVRLRFAPEPSGYLHIG
Sbjct: 181 ATKSKDQSVNTDKVKKVNGDVSENNKGGSKPSAEIDLPDAEVGKVRLRFAPEPSGYLHIG 240
Query: 266 HSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325
HSKAALLN+YFA+RY+GQ+IVRFDDTNPAKESNEFVDNL+KDI+TLGIKYE +TYTSDYF
Sbjct: 241 HSKAALLNKYFAERYKGQVIVRFDDTNPAKESNEFVDNLIKDIDTLGIKYEQITYTSDYF 300
Query: 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERG 385
P+LMEMAE LIRQGKAYVDDTPREQMQKERMDGI+SKCRNNS+EEN+KLWKEMIAG+ERG
Sbjct: 301 PELMEMAEKLIRQGKAYVDDTPREQMQKERMDGIDSKCRNNSVEENLKLWKEMIAGTERG 360
Query: 386 LECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHA 445
L+CC+RGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYKVYPTYDFACP+VD+ EGITHA
Sbjct: 361 LQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPYVDSIEGITHA 420
Query: 446 LRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDP 505
LRSSEYHDRNAQYY IQED+G+RKV IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD
Sbjct: 421 LRSSEYHDRNAQYYWIQEDMGLRKVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDA 480
Query: 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIED 565
RFPTVQGIVRRGL +EALIQFI+EQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI D
Sbjct: 481 RFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIAD 540
Query: 566 RRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDW 625
RRVLLTLTDGP+KPFVRIIPRHKKYE AG+KATTYTKRIW+D ADA +SA EE+TLMDW
Sbjct: 541 RRVLLTLTDGPEKPFVRIIPRHKKYEAAGDKATTYTKRIWLDLADAVSLSAGEEVTLMDW 600
Query: 626 GNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKK 685
GNAIVKEI +DQDGN+ LSG LHLEGSVK TKLKLTWLPE +ELV+LTLV FDYLITKK
Sbjct: 601 GNAIVKEIEKDQDGNIIGLSGVLHLEGSVKTTKLKLTWLPEIDELVSLTLVEFDYLITKK 660
Query: 686 KLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL 745
KLEEGEDF+DV+NPCT+ ET A GDSNMRNL+RG++LQLERKGYFRCD+PF R S+P+VL
Sbjct: 661 KLEEGEDFIDVVNPCTKKETLAYGDSNMRNLQRGDLLQLERKGYFRCDLPFIRPSQPIVL 720
Query: 746 FAIPDGRQQAVFK 758
+AIPDGRQQ K
Sbjct: 721 YAIPDGRQQTSLK 733
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575275|ref|XP_003555767.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1225 bits (3169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/733 (78%), Positives = 646/733 (88%), Gaps = 14/733 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYI 95
M+IK +F SPPL VIAAAKLAGI+ +T+ S P+F FS+G KL G Y LLRYI
Sbjct: 1 MDIKTFAFAPSSPPLSVIAAAKLAGISPTIDTALSPDSPPSFIFSDGLKLHGPYALLRYI 60
Query: 96 GRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI 152
GRV NFYGQN +E+ +IDEWLDY P+ S G FENAC Y+D+YLE+RTF+VG+SLSI
Sbjct: 61 GRVASLPNFYGQNPFESSQIDEWLDYAPILSLGPAFENACKYIDEYLEKRTFLVGYSLSI 120
Query: 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPT 212
D+AIW+ LAG+G+RW+SLRKSKKY NL RWFNS+ E+ +L+EVT+ Y +GLG+PT
Sbjct: 121 ADLAIWAGLAGSGKRWESLRKSKKYPNLARWFNSIVEEHGTALNEVTSVYAGKKGLGEPT 180
Query: 213 AAKSKEQ-------QGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIG 265
A KSKEQ + V GDVSE K GS+PS E+DLPDAE+GKVRLRFAPEPSGYLHIG
Sbjct: 181 ATKSKEQSVNTDKVKKVNGDVSENNKGGSKPSAEIDLPDAEVGKVRLRFAPEPSGYLHIG 240
Query: 266 HSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325
HSKAALLN+YFA+RYQGQ+IVRFDDTNPAKESNEFVDNL+KDI+TLGIKYE +TYTSDYF
Sbjct: 241 HSKAALLNKYFAERYQGQVIVRFDDTNPAKESNEFVDNLIKDIDTLGIKYEQITYTSDYF 300
Query: 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERG 385
P+LMEMAE LIR+GK YVDDTPREQMQKERMDGIESKCRNN +EEN+KLWKEMIAG+ERG
Sbjct: 301 PELMEMAEKLIREGKTYVDDTPREQMQKERMDGIESKCRNNIVEENLKLWKEMIAGTERG 360
Query: 386 LECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHA 445
L+CC+RGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYKVYPTYDFACP+VDA EGITHA
Sbjct: 361 LQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPYVDAIEGITHA 420
Query: 446 LRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDP 505
LRSSEYHDRNAQYYRIQED+G+RKV IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD
Sbjct: 421 LRSSEYHDRNAQYYRIQEDMGLRKVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDA 480
Query: 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIED 565
RFPTVQGIVRRGL +EALIQFI+EQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI D
Sbjct: 481 RFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIAD 540
Query: 566 RRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDW 625
RRVLLTLTDGP+KPFVRIIPRHKKYE AG+K TTYTKRIW+DHADA +SA EE+TLMDW
Sbjct: 541 RRVLLTLTDGPEKPFVRIIPRHKKYEAAGDKVTTYTKRIWLDHADAVSLSAGEEVTLMDW 600
Query: 626 GNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKK 685
GNAIVKEI +DQDGN+T LSG LHLEGSVK TKLKLTWLPE +ELV LTLV FDYLITKK
Sbjct: 601 GNAIVKEIEKDQDGNITGLSGALHLEGSVKTTKLKLTWLPEIDELVCLTLVEFDYLITKK 660
Query: 686 KLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL 745
KLEE EDF+DVLNPCT+ ET A GDSNMRNL+RG++LQLERKGYFRCD+PF R S+P+VL
Sbjct: 661 KLEE-EDFIDVLNPCTKKETLAYGDSNMRNLQRGDVLQLERKGYFRCDLPFIRPSQPIVL 719
Query: 746 FAIPDGRQQAVFK 758
+AIPDGRQQ K
Sbjct: 720 YAIPDGRQQTSLK 732
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441991|ref|XP_003591273.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355480321|gb|AES61524.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/735 (77%), Positives = 647/735 (88%), Gaps = 13/735 (1%)
Query: 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLR 93
M ++IK LSF A +PPL VIAA+KLAG + +TS SAPTF FS+GSKL G +VLLR
Sbjct: 1 MDIKIKTLSFSAAAPPLAVIAASKLAGFSPSIDTSLPPDSAPTFLFSDGSKLPGAFVLLR 60
Query: 94 YIGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSL 150
+IGR NFYGQNA++A +ID L+Y PV SSG FEN C Y+D YLE+RTF+VG+SL
Sbjct: 61 HIGRTATLPNFYGQNAFQASQIDVLLEYAPVLSSGPAFENGCKYIDDYLEKRTFLVGYSL 120
Query: 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGK 210
SI D+AIW+ LAG G+RW+SLRKSKKYQNL RW+NS+ AE+ +L+EVTATY+ +G+G+
Sbjct: 121 SIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSIVAEHGTALNEVTATYIGKKGVGE 180
Query: 211 PTAAKSKEQ-------QGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLH 263
P+A K K+Q + V GDVS+ K G +PS E+DLP AE+GKVRLRFAPEPSGYLH
Sbjct: 181 PSATKPKDQPVVKDKVKNVNGDVSDNIKGGGKPSAEIDLPAAEVGKVRLRFAPEPSGYLH 240
Query: 264 IGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSD 323
IGHSKAALLN+YFA+RYQGQ+I+RFDDTNPAKESNEFVDNL+KD+ETLG+KYE +TYTSD
Sbjct: 241 IGHSKAALLNKYFAERYQGQVILRFDDTNPAKESNEFVDNLIKDVETLGVKYERITYTSD 300
Query: 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSE 383
YFP+LME+AE LI +G+AYVDDTPREQMQKERMDGIES+CRN+S+EEN+KLWKEMIAGSE
Sbjct: 301 YFPELMELAEKLISKGRAYVDDTPREQMQKERMDGIESQCRNHSVEENLKLWKEMIAGSE 360
Query: 384 RGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGIT 443
RGL+CC+RGKLDMQDPNKSLRDPVYYRCNP+PHHRIGSKYKVYPTYDFACPFVDA EGIT
Sbjct: 361 RGLQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPFVDAHEGIT 420
Query: 444 HALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWD 503
HALRSSEYHDRNAQYYRIQ D+GV +V IYEFSRLNMVYTLLSKRKLLWFVQN KV+ WD
Sbjct: 421 HALRSSEYHDRNAQYYRIQADMGVTRVLIYEFSRLNMVYTLLSKRKLLWFVQNEKVESWD 480
Query: 504 DPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 563
DPRFPTVQGIVRRGL +EALIQFI+EQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI
Sbjct: 481 DPRFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 540
Query: 564 EDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLM 623
DRRVLLTLTDGP+K FVRIIPRHKKYE AG KATTYTKRIWID+ADA+ +SA EE+TLM
Sbjct: 541 ADRRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLM 600
Query: 624 DWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLIT 683
DWGNA+VKE+ +DQDGNVT LSG LHLEGSVK TKLKLTWLPE +ELV+LTL+ FDYLIT
Sbjct: 601 DWGNAVVKEVEKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLIT 660
Query: 684 KKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
KKKLEEGEDF DVLNPCT+ ET A GDSNMRNLKRGE+LQLERKGYFRCDVPF R SKP+
Sbjct: 661 KKKLEEGEDFTDVLNPCTKKETLAYGDSNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPI 720
Query: 744 VLFAIPDGRQQAVFK 758
VLFAIPDGRQQ K
Sbjct: 721 VLFAIPDGRQQTSLK 735
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525786|ref|XP_004169897.1| PREDICTED: LOW QUALITY PROTEIN: probable glutamate--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/682 (81%), Positives = 610/682 (89%), Gaps = 8/682 (1%)
Query: 84 KLQGTYVLLRYIGRVGN---FYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLE 140
KL G VLLRYIGRV N FYGQNA+E+ +IDEWL+Y P+ SSGS FENAC+YVDKYLE
Sbjct: 2 KLHGASVLLRYIGRVTNIPNFYGQNAFESSQIDEWLEYAPILSSGSAFENACSYVDKYLE 61
Query: 141 RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200
RRTF+VGHSLS+ D+AIWS LAGTGQRW+SLRKSKKY NL RWFNSL EYSD LD+V
Sbjct: 62 RRTFLVGHSLSLADVAIWSGLAGTGQRWESLRKSKKYLNLQRWFNSLLVEYSDELDDVLT 121
Query: 201 TYVSNRGLGKPTAAKSKEQ----QGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAP 256
+V RG GK + K KEQ V D S+KGKAGS+ +FEVDLP+ E GKVRLRFAP
Sbjct: 122 AFVGKRG-GKSSGPKLKEQGLKTNSVNQDASDKGKAGSKSTFEVDLPNVEFGKVRLRFAP 180
Query: 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE 316
EPSGYLHIGHSKAALLNQYFAQRY G++I+RFDDTNPAKESNEFV+NLLKDIETLGIKYE
Sbjct: 181 EPSGYLHIGHSKAALLNQYFAQRYNGEVIIRFDDTNPAKESNEFVENLLKDIETLGIKYE 240
Query: 317 TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWK 376
TVTYTSDYFP LMEMAENLIRQGKAY+DDTPREQMQKERM+GIESK R+NS EN++LWK
Sbjct: 241 TVTYTSDYFPQLMEMAENLIRQGKAYIDDTPREQMQKERMEGIESKSRSNSPGENLRLWK 300
Query: 377 EMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV 436
EMI G+E+GL CCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK+YPTYDFACPFV
Sbjct: 301 EMILGTEQGLLCCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKIYPTYDFACPFV 360
Query: 437 DAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQN 496
D+ EGITHALRSSEYHDRNAQYYRIQED+G+RKVHIYEFSRLNMVYTLLSKRKLLWFVQN
Sbjct: 361 DSIEGITHALRSSEYHDRNAQYYRIQEDMGLRKVHIYEFSRLNMVYTLLSKRKLLWFVQN 420
Query: 497 GKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVC 556
GKVDGWDDPRFPTVQGIVRRGL +EALIQFILEQGASKNLNLMEWDKLWTINK+ IDPVC
Sbjct: 421 GKVDGWDDPRFPTVQGIVRRGLKIEALIQFILEQGASKNLNLMEWDKLWTINKRXIDPVC 480
Query: 557 PRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISA 616
PRHTAVIE+RRVL TL +GP+ PFVRIIP+HKKYEGAGEK+TT+TKRIWID +DAQ I
Sbjct: 481 PRHTAVIEERRVLFTLGNGPEIPFVRIIPKHKKYEGAGEKSTTFTKRIWIDQSDAQCIEV 540
Query: 617 NEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLV 676
+EEITLMDWGNAIVK I +DQDG V QLSG LHLEGSVK TKLK+TWLPE ELV L+L+
Sbjct: 541 DEEITLMDWGNAIVKGIEKDQDGFVKQLSGILHLEGSVKTTKLKITWLPEIKELVTLSLM 600
Query: 677 GFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPF 736
+DYLITKKKLEEGEDFLDVLNPCT+ ET A+GDSNMRN+KRG+ILQLERKGYFRCDVP+
Sbjct: 601 EYDYLITKKKLEEGEDFLDVLNPCTKKETIAVGDSNMRNIKRGDILQLERKGYFRCDVPY 660
Query: 737 TRSSKPVVLFAIPDGRQQAVFK 758
RSSKP+VLFAIPDGRQQ+ K
Sbjct: 661 VRSSKPIVLFAIPDGRQQSCLK 682
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808683|ref|XP_002872225.1| hypothetical protein ARALYDRAFT_489491 [Arabidopsis lyrata subsp. lyrata] gi|297318062|gb|EFH48484.1| hypothetical protein ARALYDRAFT_489491 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/718 (75%), Positives = 628/718 (87%), Gaps = 16/718 (2%)
Query: 44 LSFPADSPPLLVIAAAKLAGITIPTETSGSA---PTFSFSNGSKLQGTYVLLRYIGRVGN 100
LSFP +SPPL VI A L+ + ++S S P+F FS+G KL GT VLLRY+GR N
Sbjct: 6 LSFPPESPPLSVIVALSLSASPVTIDSSASVTTVPSFVFSDGRKLSGTTVLLRYVGRSAN 65
Query: 101 ----FYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156
FYG NA+++ +IDEW+DY VFSSGSEFENAC VDKYLE RTF+VGHSLSI D+A
Sbjct: 66 TLPDFYGNNAFDSSQIDEWVDYASVFSSGSEFENACGRVDKYLESRTFLVGHSLSIADVA 125
Query: 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAA-K 215
IWSALAGTGQRW+SLRKSKKYQ+LVRWFNS+ EYS+ L++V ATYV + GKP AA K
Sbjct: 126 IWSALAGTGQRWESLRKSKKYQSLVRWFNSILDEYSELLNKVLATYV-KKSSGKPVAAPK 184
Query: 216 SKE-QQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQ 274
SK+ QQ +KGD +K K EVDLP+AEIGKVRLRFAPEPSGYLHIGH+KAALLN+
Sbjct: 185 SKDSQQALKGDAQDKSKP------EVDLPEAEIGKVRLRFAPEPSGYLHIGHAKAALLNK 238
Query: 275 YFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN 334
YFA+RYQG++IVRFDDTNPAKESNEFVDNL+KDI TLGIKYE VTYTSDYFP+LMEMAE
Sbjct: 239 YFAERYQGEVIVRFDDTNPAKESNEFVDNLVKDIGTLGIKYERVTYTSDYFPELMEMAEK 298
Query: 335 LIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394
L+R+GKAYVDDTPREQMQKERMDGI+SKCRN+S+EEN+KLWKEMIAGSERGL+CC+RGK
Sbjct: 299 LMREGKAYVDDTPREQMQKERMDGIDSKCRNHSVEENLKLWKEMIAGSERGLQCCVRGKF 358
Query: 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDR 454
+MQDPNK++RDPVYYRCNP+ HHRIG KYK+YPTYDFACPFVD+ EGITHALRSSEYHDR
Sbjct: 359 NMQDPNKAMRDPVYYRCNPMSHHRIGDKYKIYPTYDFACPFVDSLEGITHALRSSEYHDR 418
Query: 455 NAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514
NAQY+++ ED+G+R+V +YEFSRLN+V+TLLSKRKLLWFVQ G VDGWDDPRFPTVQGIV
Sbjct: 419 NAQYFKVLEDMGLRQVQLYEFSRLNLVFTLLSKRKLLWFVQTGLVDGWDDPRFPTVQGIV 478
Query: 515 RRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTD 574
RRGL +EALIQFILEQGASKNLNLMEWDKLW+INK+IIDPVCPRHTAVI +RRVL TLTD
Sbjct: 479 RRGLKIEALIQFILEQGASKNLNLMEWDKLWSINKRIIDPVCPRHTAVIAERRVLFTLTD 538
Query: 575 GPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEIS 634
GPD+PFVR+IP+HKK+EGAGEKATT+TK IWI+ ADA IS EE+TLMDWGNAIVKEI+
Sbjct: 539 GPDEPFVRLIPKHKKFEGAGEKATTFTKSIWIEEADASAISVGEEVTLMDWGNAIVKEIT 598
Query: 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFL 694
+D++G VT LSG L+L+GSVK TKLKLTWLP+TNELVNLTL FDYLITKKKLE+ ++
Sbjct: 599 KDKEGRVTALSGVLNLQGSVKTTKLKLTWLPDTNELVNLTLTEFDYLITKKKLEDDDEVA 658
Query: 695 DVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
D +NP T+ ET A+GDSNMRNLK G+++QLERKGYFRCDVPF +SSKP+VLF+IPDGR
Sbjct: 659 DFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKPIVLFSIPDGR 716
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | ||||||
| TAIR|locus:2146769 | 719 | AT5G26710 [Arabidopsis thalian | 0.926 | 0.976 | 0.750 | 5.9e-302 | |
| POMBASE|SPAC17A5.15c | 716 | SPAC17A5.15c "glutamate-tRNA l | 0.692 | 0.733 | 0.543 | 1e-165 | |
| SGD|S000003214 | 708 | GUS1 "Glutamyl-tRNA synthetase | 0.819 | 0.877 | 0.477 | 3.6e-160 | |
| CGD|CAL0002084 | 725 | orf19.7057 [Candida albicans ( | 0.832 | 0.870 | 0.470 | 6.1e-158 | |
| UNIPROTKB|F1S9K5 | 1509 | EPRS "Uncharacterized protein" | 0.740 | 0.371 | 0.466 | 2.3e-157 | |
| UNIPROTKB|E2QUR2 | 1509 | EPRS "Uncharacterized protein" | 0.741 | 0.372 | 0.462 | 4.8e-157 | |
| UNIPROTKB|P07814 | 1512 | EPRS "Bifunctional glutamate/p | 0.740 | 0.371 | 0.465 | 9e-156 | |
| UNIPROTKB|G3X6L9 | 1511 | EPRS "Uncharacterized protein" | 0.741 | 0.371 | 0.461 | 7.1e-154 | |
| FB|FBgn0005674 | 1714 | Aats-glupro "Glutamyl-prolyl-t | 0.923 | 0.408 | 0.424 | 7.4e-153 | |
| DICTYBASE|DDB_G0287467 | 764 | gluS "glutamate-tRNA ligase" [ | 0.912 | 0.905 | 0.418 | 1e-146 |
| TAIR|locus:2146769 AT5G26710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2898 (1025.2 bits), Expect = 5.9e-302, P = 5.9e-302
Identities = 539/718 (75%), Positives = 631/718 (87%)
Query: 44 LSFPADSPPLLVIAAAKLAGITIPTETSGSA---PTFSFSNGSKLQGTYVLLRYIGR--- 97
LSFP +SPPL VI A L+ + ++S +A P+F FS+G KL G VLLRY+GR
Sbjct: 6 LSFPPESPPLSVIVALSLSASPVTIDSSAAATTVPSFVFSDGRKLNGATVLLRYVGRSAK 65
Query: 98 -VGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156
+ +FYG NA+++ +IDEW+DY VFSSGSEFENAC VDKYLE TF+VGHSLSI D+A
Sbjct: 66 KLPDFYGNNAFDSSQIDEWVDYASVFSSGSEFENACGRVDKYLESSTFLVGHSLSIADVA 125
Query: 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAA-K 215
IWSALAGTGQRW+SLRKSKKYQ+LVRWFNS+ EYS+ L++V ATYV +G GKP AA K
Sbjct: 126 IWSALAGTGQRWESLRKSKKYQSLVRWFNSILDEYSEVLNKVLATYVK-KGSGKPVAAPK 184
Query: 216 SKE-QQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQ 274
SK+ QQ VKGD +KGK P EVDLP+AEIGKV+LRFAPEPSGYLHIGH+KAALLN+
Sbjct: 185 SKDSQQAVKGDGQDKGK----P--EVDLPEAEIGKVKLRFAPEPSGYLHIGHAKAALLNK 238
Query: 275 YFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN 334
YFA+RYQG++IVRFDDTNPAKESNEFVDNL+KDI TLGIKYE VTYTSDYFP+LM+MAE
Sbjct: 239 YFAERYQGEVIVRFDDTNPAKESNEFVDNLVKDIGTLGIKYEKVTYTSDYFPELMDMAEK 298
Query: 335 LIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394
L+R+GKAYVDDTPREQMQKERMDGI+SKCRN+S+EEN+KLWKEMIAGSERGL+CC+RGK
Sbjct: 299 LMREGKAYVDDTPREQMQKERMDGIDSKCRNHSVEENLKLWKEMIAGSERGLQCCVRGKF 358
Query: 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDR 454
+MQDPNK++RDPVYYRCNP+ HHRIG KYK+YPTYDFACPFVD+ EGITHALRSSEYHDR
Sbjct: 359 NMQDPNKAMRDPVYYRCNPMSHHRIGDKYKIYPTYDFACPFVDSLEGITHALRSSEYHDR 418
Query: 455 NAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514
NAQY+++ ED+G+R+V +YEFSRLN+V+TLLSKRKLLWFVQ G VDGWDDPRFPTVQGIV
Sbjct: 419 NAQYFKVLEDMGLRQVQLYEFSRLNLVFTLLSKRKLLWFVQTGLVDGWDDPRFPTVQGIV 478
Query: 515 RRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTD 574
RRGL +EALIQFILEQGASKNLNLMEWDKLW+INK+IIDPVCPRHTAV+ +RRVL TLTD
Sbjct: 479 RRGLKIEALIQFILEQGASKNLNLMEWDKLWSINKRIIDPVCPRHTAVVAERRVLFTLTD 538
Query: 575 GPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEIS 634
GPD+PFVR+IP+HKK+EGAGEKATT+TK IW++ ADA IS EE+TLMDWGNAIVKEI+
Sbjct: 539 GPDEPFVRMIPKHKKFEGAGEKATTFTKSIWLEEADASAISVGEEVTLMDWGNAIVKEIT 598
Query: 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFL 694
+D++G VT LSG L+L+GSVK TKLKLTWLP+TNELVNLTL FDYLITKKKLE+ ++
Sbjct: 599 KDEEGRVTALSGVLNLQGSVKTTKLKLTWLPDTNELVNLTLTEFDYLITKKKLEDDDEVA 658
Query: 695 DVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
D +NP T+ ET A+GDSNMRNLK G+++QLERKGYFRCDVPF +SSKP+VLF+IPDGR
Sbjct: 659 DFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKPIVLFSIPDGR 716
|
|
| POMBASE|SPAC17A5.15c SPAC17A5.15c "glutamate-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 287/528 (54%), Positives = 378/528 (71%)
Query: 225 DVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
++S+K K+ S P++E+ LPDA GKV RF PEPSGYLHIGH+KAALLNQYFA +Y G+L
Sbjct: 183 NISKKQKS-SGPNYEIGLPDAIDGKVVTRFPPEPSGYLHIGHAKAALLNQYFANKYHGKL 241
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVD 344
IVRFDDTNP+KE++EF D +L+D+ LGIK + VTYTSDY + + ++I+ G+AY D
Sbjct: 242 IVRFDDTNPSKENSEFQDAILEDVALLGIKPDVVTYTSDYLDTIHQYCVDMIKSGQAYAD 301
Query: 345 DTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLR 404
DT E M+ ER +GI SK R+ IEE++++ EM GS+ GL+ C+R K+ ++PNK++R
Sbjct: 302 DTDVETMRHERTEGIPSKHRDRPIEESLEILSEMDKGSDVGLKNCIRAKISYENPNKAMR 361
Query: 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQED 464
DPV YRCN +PHHR G+KY+ YPTYDFACP VD+ EG+THALR++EY DRN Y + +
Sbjct: 362 DPVIYRCNLLPHHRTGTKYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRNPLYQWMIKA 421
Query: 465 LGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALI 524
+ +RK+H++EFSR+N V TLLSKRKL V +G V GWDDPRFPTV+G+ RRG+ +EAL
Sbjct: 422 MNLRKIHVWEFSRMNFVRTLLSKRKLTEIVDHGLVWGWDDPRFPTVRGVRRRGMTIEALQ 481
Query: 525 QFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRII 584
Q+I+ QG SKN+ ++W W NKKIIDPV PRHTAV V T+ +GP P+
Sbjct: 482 QYIVSQGPSKNILTLDWTSFWATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAEDR 541
Query: 585 PRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQL 644
PRHKK G K + + I I+ ADAQ +EE+TLMDWGNA V+EI+RD G VT L
Sbjct: 542 PRHKKNPELGNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYVREINRDASGKVTSL 601
Query: 645 SGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFE 704
LHL+G K T+ K+TWL +T + + LV FDYLITK KLEEGE++ D L P T F
Sbjct: 602 KLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKDKLEEGENYKDFLTPQTEFH 661
Query: 705 TAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
+ D ++NLK+G+I+Q+ERKGY+ DVPF + VLF IPDG+
Sbjct: 662 SPVFADVGIKNLKKGDIIQVERKGYYIVDVPFDGTQ--AVLFNIPDGK 707
|
|
| SGD|S000003214 GUS1 "Glutamyl-tRNA synthetase (GluRS)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
Identities = 309/647 (47%), Positives = 432/647 (66%)
Query: 111 EIDEWLDYTP---VFSSGSEFENACTYVDKYLERRTFVVGH-SLSIVDIAIWSALAGTGQ 166
++ +W++ V + ++ + +D L RTF++G S D+A W AL G
Sbjct: 74 QVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGM 133
Query: 167 RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDV 226
S+ K+K N+ RW+ L +D + ++ L K + + K+ V G
Sbjct: 134 -CGSIIKNKVDVNVSRWYTLLE------MDPIFGE--AHDFLSK-SLLELKKSANV-GKK 182
Query: 227 SEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIV 286
E KA +FE+DLPDA++G+V RF PEPSGYLHIGH+KAALLNQYFAQ Y+G+LI+
Sbjct: 183 KETHKA----NFEIDLPDAKMGEVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYKGKLII 238
Query: 287 RFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDT 346
RFDDTNP+KE EF D++L+D++ LGIK + +TY+SDYF ++ + +I+ GKAY DDT
Sbjct: 239 RFDDTNPSKEKEEFQDSILEDLDLLGIKGDRITYSSDYFQEMYDYCVQMIKDGKAYCDDT 298
Query: 347 PREQMQKERMDGIESKCRNNSIEENMKLW-KEMIAGSERGLECCLRGKLDMQDPNKSLRD 405
P E+M++ERMDG+ S R+ S+EEN++++ +EM G+E GL+ C+R K+D + NK+LRD
Sbjct: 299 PTEKMREERMDGVASARRDRSVEENLRIFTEEMKNGTEEGLKNCVRAKIDYKALNKTLRD 358
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465
PV YRCN PHHR GS +K+YPTYDF P VDA EG+THALR+ EY DRNAQY + + L
Sbjct: 359 PVIYRCNLTPHHRTGSTWKIYPTYDFCVPIVDAIEGVTHALRTIEYRDRNAQYDWMLQAL 418
Query: 466 GVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQ 525
+RKVHI++F+R+N V TLLSKRKL W V V WDDPRFPTV+G+ RRG+ VE L
Sbjct: 419 RLRKVHIWDFARINFVRTLLSKRKLQWMVDKDLVGNWDDPRFPTVRGVRRRGMTVEGLRN 478
Query: 526 FILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIP 585
F+L QG S+N+ +EW+ +W NKK+IDP+ PRHTA++ ++ L ++ P +P + + P
Sbjct: 479 FVLSQGPSRNVINLEWNLIWAFNKKVIDPIAPRHTAIVNPVKIHLEGSEAPQEPKIEMKP 538
Query: 586 RHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLS 645
+HKK GEK Y K I +D DA +I+ +EE+TLMDWGN I+ + ++ DG++
Sbjct: 539 KHKKNPAVGEKKVIYYKDIVVDKDDADVINVDEEVTLMDWGNVIITK--KNDDGSMVAK- 595
Query: 646 GFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFET 705
L+LEG K TK KLTWL +T ++V + LV FD+LITK +LEE E F D L P T F T
Sbjct: 596 --LNLEGDFKKTKHKLTWLADTKDVVPVDLVDFDHLITKDRLEEDESFEDFLTPQTEFHT 653
Query: 706 AAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
AI D N++++K G+I+Q ERKGY+R D + KP V F IPDG+
Sbjct: 654 DAIADLNVKDMKIGDIIQFERKGYYRLDA-LPKDGKPYVFFTIPDGK 699
|
|
| CGD|CAL0002084 orf19.7057 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 306/651 (47%), Positives = 424/651 (65%)
Query: 108 EAGEIDEWLDY--TPVFSSG-SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGT 164
E + EW+ + T ++ E +D++L R+F+VG+ S+ DIAIW L
Sbjct: 80 ERSKSQEWIKFALTKLYVKNFKELAVDLEKLDQHLNFRSFIVGYQYSLADIAIWGVLRAN 139
Query: 165 GQRWDSLRKSKKYQNLVRWFNSLSAE--YSDSLDEVTATYVSNRGLGKPTAAKSKEQQGV 222
S+ K+ Y N+ RW+N L+ + + S++ +T + R K +AK+ G
Sbjct: 140 ALM-GSVIKNGVYANISRWYNLLADDKRFEGSVELMTKSLAEVRKAAK--SAKTAAAGGK 196
Query: 223 KGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQG 282
K E KA SFE+DLP AE+GKV RF PEPSGYLHIGH+KAA+LN+YFA +++G
Sbjct: 197 K----EAHKA----SFEIDLPGAEMGKVVTRFPPEPSGYLHIGHAKAAVLNEYFAHKFKG 248
Query: 283 QLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAY 342
+LI+RFDDTNP KE EF D++++D+E LGIK + +TY+SDYF + ++A +I+ G AY
Sbjct: 249 KLIIRFDDTNPTKEKVEFQDSIIEDLELLGIKGDQITYSSDYFQTMYDLAVKMIKDGNAY 308
Query: 343 VDDTPREQMQKERMDGIESKCRNNSIEENMKLW-KEMIAGSERGLECCLRGKLDMQDPNK 401
DDTP + M+++RM G S R S+EEN++++ +EM G+E GL+ CLR K+D + PNK
Sbjct: 309 CDDTPVDTMREQRMVGDASARRERSVEENLRIFTEEMKNGTEEGLKNCLRAKIDYKAPNK 368
Query: 402 SLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRI 461
+LRDPV YRCN PHHR G+++K+YP YDF P VD+ EG+THALR++EY DRN QY +
Sbjct: 369 ALRDPVIYRCNLTPHHRTGTEWKMYPIYDFCVPVVDSIEGVTHALRTNEYRDRNPQYEWM 428
Query: 462 QEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521
Q+ LG+R V I++F R+N V TLLSKRKL WFV V WDDPRFPTV+G+ RRG+ VE
Sbjct: 429 QKTLGLRPVAIWDFGRVNFVRTLLSKRKLQWFVDKNYVSNWDDPRFPTVRGVRRRGMTVE 488
Query: 522 ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFV 581
L FI+ QG S+N+ +EW +W +NKKIIDPV PR TAV V + L +GP +P+
Sbjct: 489 GLRNFIISQGPSRNIINLEWSVIWAMNKKIIDPVAPRFTAVDAKNVVSVKLLNGPKEPYT 548
Query: 582 RIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNV 641
P+HKK G K + ++ ID DA L + EE+T MDWGN IV +++++ D V
Sbjct: 549 ESKPKHKKNPEVGNKDVIFADQVLIDQEDADL-TEGEEVTFMDWGNIIVSKVNKEGD-IV 606
Query: 642 TQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCT 701
+ LHLEG + T K+TWL T + V + +V FD+LITK KL+E ++F D + P T
Sbjct: 607 KSVEANLHLEGDFRKTSKKITWLAYTKDKVEIDMVDFDHLITKDKLDENDNFEDFITPET 666
Query: 702 RFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
F T D N+ LK G+I+Q ERKGYFR D P + KP VL+ IPDG+
Sbjct: 667 EFHTKGFADLNVGKLKAGDIIQFERKGYFRVDKP-SEEGKPAVLYTIPDGK 716
|
|
| UNIPROTKB|F1S9K5 EPRS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 2.3e-157, Sum P(2) = 2.3e-157
Identities = 268/575 (46%), Positives = 380/575 (66%)
Query: 188 SAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSE-KGKAGSRPSFEV----DL 242
+A + + L + A R G A ++ + G K + S K K +V +L
Sbjct: 131 NAAWQEQLQQNKAPVHVKRWFGFLEAQRAFQSVGTKWNASTTKAKVVPEKKQDVGKFVEL 190
Query: 243 PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVD 302
P AE+GKV +RF PE SGYLHIGH+KAALLNQ++ ++G+LI+RFDDTNP KE +F
Sbjct: 191 PGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEK 250
Query: 303 NLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESK 362
+L+D+ L IK + TYTSD+F +M+ AE LI++GKAYVDDTP EQM+ ER IESK
Sbjct: 251 VILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESK 310
Query: 363 CRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSK 422
R NS+E+N+++W+EM GS+ G CCLR K+DM N +RDP YRC PH R G+K
Sbjct: 311 HRANSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNK 370
Query: 423 YKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY 482
Y VYPTYDFACP VD+ EG+THALR++EYHDR+ Q+Y I E LG+RK +I+E+SRLN+
Sbjct: 371 YNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNN 430
Query: 483 TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542
T+LSKRKL WFV G VDGWDDPRFPTV+G++RRG+ VE L QFI QG+S+++ MEWD
Sbjct: 431 TVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSIVNMEWD 490
Query: 543 KLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTK 602
K+W NKK+IDPV PR+ A+++ V + + + ++ ++ + +H K G K Y+
Sbjct: 491 KIWAFNKKVIDPVAPRYVALLKKEAVPVNIPEAQEE--MKEVAKHPKNPDVGLKPVWYSP 548
Query: 603 RIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLT 662
+++I+ ADA+ +S E +T ++WGN + +I ++ DG +T L L+LE ++T
Sbjct: 549 KVFIEGADAETLSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKTTENH-QIT 607
Query: 663 WLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEIL 722
WL E + L V +++LITK L + EDF +N ++ E +GD +++LK+G+I+
Sbjct: 608 WLAELHVLCPRICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDII 667
Query: 723 QLERKGYFRCDVPFTRSSK------PVVLFAIPDG 751
QL+R+G+F CD P+ S P VL IPDG
Sbjct: 668 QLQRRGFFICDQPYEPVSPYSCIEAPCVLIYIPDG 702
|
|
| UNIPROTKB|E2QUR2 EPRS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 4.8e-157, Sum P(2) = 4.8e-157
Identities = 267/577 (46%), Positives = 381/577 (66%)
Query: 188 SAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSE-KGKAGSRPSFEV----DL 242
+A + + L + A R G A ++ + G K ++S K K +V +L
Sbjct: 131 NAAWQEQLKQNKAPVHIKRWFGFLEAQQAFQSVGTKWNISATKAKVTPEKKQDVGKFVEL 190
Query: 243 PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVD 302
P AE+GKV +RF PE SGYLHIGH+KAALLNQ++ ++G+LI+RFDDTNP KE +F
Sbjct: 191 PGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEK 250
Query: 303 NLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESK 362
+L+D+ L IK + TYTSD+F +M+ AE LI++GKAYVDDTP EQM+ ER IESK
Sbjct: 251 VILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESK 310
Query: 363 CRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSK 422
R NS+E+N+++W+EM GS+ G CCLR K+DM N +RDP YRC PH R G+K
Sbjct: 311 HRKNSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNK 370
Query: 423 YKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY 482
Y VYPTYDFACP VD+ EG+THALR++EYHDR+ Q+Y I E LG+RK +I+E+SRLN+
Sbjct: 371 YNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNN 430
Query: 483 TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542
T+LSKRKL WFV G VDGWDDPRFPTV+G++RRG+ VE L QFI QG+S+++ MEWD
Sbjct: 431 TVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWD 490
Query: 543 KLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTK 602
K+W NKK+IDPV PR+ A+++ + + + + ++ ++ + +H K G K Y+
Sbjct: 491 KIWAFNKKVIDPVAPRYVALLKKEVIPVNIPEAQEE--MKEVAKHPKNPDVGLKPVWYSS 548
Query: 603 RIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLT 662
+++I+ ADA+ +S E +T ++WGN + +I ++ DG + L L+LE K+T
Sbjct: 549 KVFIEGADAETLSEGEMVTFINWGNINIAKIHKNADGKIESLDAKLNLENKDYKKTTKIT 608
Query: 663 WLPETNELVNLTL--VGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGE 720
WL ET + + V +++LITK L + EDF +N ++ E +GD +++LK+G+
Sbjct: 609 WLAETAHALPIPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGD 668
Query: 721 ILQLERKGYFRCDVPFTRSSK------PVVLFAIPDG 751
I+QL+R+G+F CD P+ S P VL IPDG
Sbjct: 669 IIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDG 705
|
|
| UNIPROTKB|P07814 EPRS "Bifunctional glutamate/proline--tRNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
Identities = 269/578 (46%), Positives = 381/578 (65%)
Query: 188 SAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFE------VD 241
+A + + L + A R G A ++ + G K DVS KA P + V+
Sbjct: 131 NAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTT-KARVAPEKKQDVGKFVE 189
Query: 242 LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFV 301
LP AE+GKV +RF PE SGYLHIGH+KAALLNQ++ ++G+LI+RFDDTNP KE +F
Sbjct: 190 LPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFE 249
Query: 302 DNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIES 361
+L+D+ L IK + TYTSD+F +M+ AE LI++GKAYVDDTP EQM+ ER I+S
Sbjct: 250 KVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIDS 309
Query: 362 KCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGS 421
K R N IE+N+++W+EM GS+ G CCLR K+DM N +RDP YRC PH R G+
Sbjct: 310 KHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGN 369
Query: 422 KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMV 481
KY VYPTYDFACP VD+ EG+THALR++EYHDR+ Q+Y I E LG+RK +I+E+SRLN+
Sbjct: 370 KYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLN 429
Query: 482 YTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541
T+LSKRKL WFV G VDGWDDPRFPTV+G++RRG+ VE L QFI QG+S+++ MEW
Sbjct: 430 NTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEW 489
Query: 542 DKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYT 601
DK+W NKK+IDPV PR+ A+++ + + + + ++ ++ + +H K G K Y+
Sbjct: 490 DKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEE--MKEVAKHPKNPEVGLKPVWYS 547
Query: 602 KRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKL 661
+++I+ ADA+ S E +T ++WGN + +I ++ DG + L L+LE K+
Sbjct: 548 PKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKDYKKTTKV 607
Query: 662 TWLPETNELVNLTL--VGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG 719
TWL ET + + + V +++LITK L + EDF +N ++ E +GD +++LK+G
Sbjct: 608 TWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKG 667
Query: 720 EILQLERKGYFRCDVPFTRSSK------PVVLFAIPDG 751
+I+QL+R+G+F CD P+ S P VL IPDG
Sbjct: 668 DIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDG 705
|
|
| UNIPROTKB|G3X6L9 EPRS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1349 (479.9 bits), Expect = 7.1e-154, Sum P(2) = 7.1e-154
Identities = 266/577 (46%), Positives = 376/577 (65%)
Query: 188 SAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSE-KGKAGSRPSFEV----DL 242
+A + + L + A R G A ++ + G K +VS K K +V +L
Sbjct: 131 NAAWQEQLGQNKAPVHVKRWFGFLEAQQAFQSVGTKWNVSATKAKVVPEKKQDVGKFVEL 190
Query: 243 PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVD 302
P AE+GKV +RF PE SGYLHIGH+KAALLNQ++ ++G+LI+RFDDTNP KE +F
Sbjct: 191 PGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEK 250
Query: 303 NLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESK 362
+L+D+ L IK + TYTSD+F +M+ AE LI++GKAYVDDTP EQM+ ER IESK
Sbjct: 251 VILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESK 310
Query: 363 CRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSK 422
R NS+E+N+++W+EM GS+ G CCLR K+DM +RDP YRC H R G+K
Sbjct: 311 HRENSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNKGCMRDPTLYRCKIKAHPRTGNK 370
Query: 423 YKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY 482
Y VYPTYDFACP VD+ EG+THALR++EYHDR+ Q+Y I E LG+RK I+E+SRLN+
Sbjct: 371 YNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPFIWEYSRLNLNN 430
Query: 483 TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542
T+LSKRKL WFV G VDGWDDPRFPTV+G++RRG+ VE L QFI QG+S+++ MEWD
Sbjct: 431 TVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWD 490
Query: 543 KLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTK 602
K+W NKK+IDPV PR+ A+++ V + + + ++ ++ + +H K G K Y+
Sbjct: 491 KIWAFNKKVIDPVAPRYVALLKKEVVPVNIPEAQEE--MKEVAKHPKNPDVGLKPVWYSS 548
Query: 603 RIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLT 662
+++I+ ADA+ +S E +T ++WGN + +I + +G + L L+LE K+T
Sbjct: 549 KVFIEGADAETLSEGEMVTFINWGNINITKIHKSAEGKIVSLDAKLNLENKDYKKTTKIT 608
Query: 663 WLPETNEL--VNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGE 720
WL ET V V +++LITK L + EDF +N ++ E +GD +++LK+G+
Sbjct: 609 WLAETEHALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGD 668
Query: 721 ILQLERKGYFRCDVPFTRSSK------PVVLFAIPDG 751
I+QL+R+G+F CD P+ S P +L IPDG
Sbjct: 669 IIQLQRRGFFICDQPYEPVSPYSCIEAPCILIYIPDG 705
|
|
| FB|FBgn0005674 Aats-glupro "Glutamyl-prolyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
Identities = 312/735 (42%), Positives = 460/735 (62%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTET--SGSAPTFSFSNGSKL--QGTYVLLRY 94
M IK L ++PP+ +A A L T+P E S + F + L +LR
Sbjct: 1 MSIK-LKANLNNPPISGLATAHLINGTVPVEIVWSKEETSLQFPDNRLLVCHSNNDVLRA 59
Query: 95 IGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLS 151
+ R YG+ A E +ID WL ++ + + A +++DK + T++V + L+
Sbjct: 60 LARAAPDYKLYGETAIERTQIDHWLSFS--LTCEDDISWALSFLDKSIAPVTYLVANKLT 117
Query: 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKP 211
I D A+++ + R++ L Q++ RW++ ++A+ + +V + + + K
Sbjct: 118 IADFALFNEMHS---RYEFLAAKGIPQHVQRWYDLITAQ--PLIQKVLQSLPEDAKV-KR 171
Query: 212 TAAKSKEQQGVK-GDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAA 270
+ SKEQ K G+ ++GK F VDLP AE+GKV +RF PE SGYLHIGH+KAA
Sbjct: 172 SPQSSKEQTPAKTGERKQEGK------F-VDLPGAEMGKVVVRFPPEASGYLHIGHAKAA 224
Query: 271 LLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330
LLNQY+A +QG LI+RFDDTNPAKE+ EF + +L D+E L IK + T+TS+YF +++
Sbjct: 225 LLNQYYALAFQGTLIMRFDDTNPAKETVEFENVILGDLEQLQIKPDVFTHTSNYFDLMLD 284
Query: 331 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390
LI++ KAYVDDTP EQM+ ER +ES R+NS+E+N+ LW+EM+ GSE+G + C+
Sbjct: 285 YCVRLIKESKAYVDDTPPEQMKLEREQRVESANRSNSVEKNLSLWEEMVKGSEKGQKYCV 344
Query: 391 RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
R K+DM PN +RDP YRC PH R G+KYKVYPTYDFACP VDA E +TH LR++E
Sbjct: 345 RAKIDMSSPNGCMRDPTIYRCKNEPHPRTGTKYKVYPTYDFACPIVDAIENVTHTLRTTE 404
Query: 451 YHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
YHDR+ Q+Y + L +RK +I+ +SRLNM T+LSKRKL WFV +G VDGWDDPRFPTV
Sbjct: 405 YHDRDDQFYWFIDALKLRKPYIWSYSRLNMTNTVLSKRKLTWFVDSGLVDGWDDPRFPTV 464
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLL 570
+GI+RRG+ VE L +FI+ QG+SK++ M WDK+W NKK+IDP+ PR+TA+ +++RV++
Sbjct: 465 RGIIRRGMTVEGLKEFIIAQGSSKSVVFMNWDKIWAFNKKVIDPIAPRYTALEKEKRVIV 524
Query: 571 TLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIV 630
+ G +++ H K E G+K RI+ID+ DA+ + E T ++WGN ++
Sbjct: 525 NVA-GAKVERIQVSV-HPKDESLGKKTVLLGPRIYIDYVDAEALKEGENATFINWGNILI 582
Query: 631 KEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLP---ETNELVNLTLVGFDYLITKKKL 687
+++++D GN+T + L+LE LKLTWL + + V FD +I+K L
Sbjct: 583 RKVNKDASGNITSVDAALNLENKDFKKTLKLTWLAVEDDPSAYPPTFCVYFDNIISKAVL 642
Query: 688 EEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDV----P--FTRSSK 741
+ EDF + TR E +GD ++ K+G+I+QL+R+G+F+ DV P +T
Sbjct: 643 GKDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPPSGYTNVPS 702
Query: 742 PVVLFAIPDGRQQAV 756
P+VLF+IPDG + V
Sbjct: 703 PIVLFSIPDGHTKDV 717
|
|
| DICTYBASE|DDB_G0287467 gluS "glutamate-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1433 (509.5 bits), Expect = 1.0e-146, P = 1.0e-146
Identities = 299/714 (41%), Positives = 438/714 (61%)
Query: 52 PLLVIAAAKLAG-ITIPTETSGSAPTFSF-SNGSKLQGTYVLLRYIGRVG---NFYGQNA 106
PL+ I +K+ G + I + FS L+G+YV+ +Y+ R + YG+NA
Sbjct: 22 PLVAIITSKVVGGVKIVGRKGLDSTEFSIVGTQDSLKGSYVIAKYLARTTPSLSLYGENA 81
Query: 107 YEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
A +IDE++D S +F +++YL R F++G +L++ DI +++ + +
Sbjct: 82 LSASKIDEFIDKFAHLKS-EKFNEFLKEMNEYLTLRAFLIGFNLTLADIVLFARIKMVKE 140
Query: 167 RWDSLRK-SKKYQNLVRWFNSLS-----AEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQ 220
+ + K K +L RW+ LS E ++ + T S + + TAA +++
Sbjct: 141 IQEEINKLGKTIPHLNRWYGYLSQLESFVEADNAFNGKKETKASGKAGAEGTAATTEKV- 199
Query: 221 GVKGDVSEKGKAGSRPSFE-VDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQR 279
+KG G +FE ++LP GKV RF PEPSGY+HIGH KAA++N Y+A++
Sbjct: 200 -----APQKGAMGWVGNFEALNLPGLVEGKVVTRFPPEPSGYMHIGHCKAAIINNYYAEK 254
Query: 280 YQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQG 339
Y G++I+RFDDTNP+KE E+V+N++KDI LGIKYE +T+TSDYF + + A +I++G
Sbjct: 255 YNGKIIIRFDDTNPSKEKEEYVENIIKDINNLGIKYEKITHTSDYFDLIHDYAIQMIKEG 314
Query: 340 KAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
AY DDTP+ +M +ER + IES RNNS+E+N++++ EM +E+G++C LR KLDM
Sbjct: 315 IAYCDDTPQVKMSEERDNAIESVHRNNSVEKNLEMFDEMKKATEQGVKCVLRAKLDMAHI 374
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+K+ RDP YRCN PHHR G KYKVYP YDFACP VD+ EGITHALRS+EY+++ Y
Sbjct: 375 DKAFRDPAIYRCNSTPHHRTGDKYKVYPLYDFACPIVDSVEGITHALRSNEYNNKRNLYN 434
Query: 460 RIQEDLGVR-KVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGL 518
E L + K +I ++SRL+ LLSKRKL FV G V GW DPR PT+QGI RRGL
Sbjct: 435 HYLEILHLENKPYISDYSRLSFFNVLLSKRKLQHFVDTGLVSGWTDPRLPTLQGITRRGL 494
Query: 519 LVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDK 578
V AL +FIL QGAS ++ KL+ NK +++P CPR+TA+ + V TL++GP
Sbjct: 495 TVAALKEFILSQGASAANTTLDLGKLFVGNKAVLEPTCPRYTAIAKATAVKFTLSNGPTL 554
Query: 579 PFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQD 638
P V+ ++ K G K T++ + ++ D I EE+TLM+WGNAIV+ + R+++
Sbjct: 555 PEVKDCLKYAKDPSMGTKKVTFSNNLLLEGDDCNQIKEGEEVTLMNWGNAIVETLQRNEN 614
Query: 639 GNVTQLSGFLHLEGSVKNTKLKLTWLP-ETNELVNLTLVGFDYLITKKKLEEGEDFLDVL 697
G+V ++G LHLEG VK T KL+WL + + V + L +DY+ITK KLE+G+D
Sbjct: 615 GDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYIITKPKLEDGDDLDTFT 674
Query: 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDG 751
N ++FE A D N+ LK + +Q ER+G+F D KP +L IP G
Sbjct: 675 NKNSKFEIEAFTDENILTLKLNDKIQFERRGFFNVD-QVGDGVKPYILIYIPSG 727
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54KB8 | SYEC_DICDI | 6, ., 1, ., 1, ., 1, 7 | 0.4156 | 0.9182 | 0.9109 | yes | no |
| O13775 | SYEC_SCHPO | 6, ., 1, ., 1, ., 1, 7 | 0.4809 | 0.8258 | 0.8743 | yes | no |
| P46655 | SYEC_YEAST | 6, ., 1, ., 1, ., 1, 7 | 0.4826 | 0.8060 | 0.8629 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 758 | |||
| PLN02907 | 722 | PLN02907, PLN02907, glutamate-tRNA ligase | 0.0 | |
| PTZ00402 | 601 | PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov | 0.0 | |
| PLN03233 | 523 | PLN03233, PLN03233, putative glutamate-tRNA ligase | 0.0 | |
| TIGR00463 | 556 | TIGR00463, gltX_arch, glutamyl-tRNA synthetase, ar | 1e-155 | |
| PRK05347 | 554 | PRK05347, PRK05347, glutaminyl-tRNA synthetase; Pr | 1e-122 | |
| pfam00749 | 314 | pfam00749, tRNA-synt_1c, tRNA synthetases class I | 1e-115 | |
| TIGR00440 | 522 | TIGR00440, glnS, glutaminyl-tRNA synthetase | 1e-106 | |
| COG0008 | 472 | COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synth | 1e-104 | |
| PRK14703 | 771 | PRK14703, PRK14703, glutaminyl-tRNA synthetase/Yqe | 5e-95 | |
| PRK04156 | 567 | PRK04156, gltX, glutamyl-tRNA synthetase; Provisio | 2e-94 | |
| PLN02859 | 788 | PLN02859, PLN02859, glutamine-tRNA ligase | 3e-83 | |
| cd00807 | 238 | cd00807, GlnRS_core, catalytic core domain of glut | 4e-82 | |
| PTZ00437 | 574 | PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Pr | 1e-79 | |
| cd00807 | 238 | cd00807, GlnRS_core, catalytic core domain of glut | 1e-49 | |
| pfam03950 | 174 | pfam03950, tRNA-synt_1c_C, tRNA synthetases class | 3e-39 | |
| cd09287 | 240 | cd09287, GluRS_non_core, catalytic core domain of | 2e-29 | |
| cd00418 | 230 | cd00418, GlxRS_core, catalytic core domain of glut | 3e-29 | |
| cd10289 | 82 | cd10289, GST_C_AaRS_like, Glutathione S-transferas | 1e-25 | |
| cd09287 | 240 | cd09287, GluRS_non_core, catalytic core domain of | 2e-25 | |
| TIGR00464 | 470 | TIGR00464, gltX_bact, glutamyl-tRNA synthetase, ba | 2e-23 | |
| PRK12558 | 445 | PRK12558, PRK12558, glutamyl-tRNA synthetase; Prov | 4e-17 | |
| cd00808 | 239 | cd00808, GluRS_core, catalytic core domain of disc | 4e-16 | |
| PRK01406 | 476 | PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed | 1e-15 | |
| PRK05710 | 299 | PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetas | 3e-15 | |
| cd10309 | 81 | cd10309, GST_C_GluProRS_N, Glutathione S-transfera | 1e-14 | |
| PRK14895 | 513 | PRK14895, gltX, glutamyl-tRNA synthetase; Provisio | 2e-14 | |
| PRK12410 | 433 | PRK12410, PRK12410, glutamylglutaminyl-tRNA synthe | 7e-14 | |
| PLN02627 | 535 | PLN02627, PLN02627, glutamyl-tRNA synthetase | 1e-13 | |
| cd10306 | 87 | cd10306, GST_C_GluRS_N, Glutathione S-transferase | 3e-13 | |
| cd00418 | 230 | cd00418, GlxRS_core, catalytic core domain of glut | 1e-12 | |
| TIGR03838 | 271 | TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA | 7e-09 | |
| cd10305 | 101 | cd10305, GST_C_AIMP3, Glutathione S-transferase C- | 4e-08 | |
| cd03181 | 123 | cd03181, GST_C_EF1Bgamma_like, Glutathione S-trans | 6e-08 | |
| cd03200 | 96 | cd03200, GST_C_AIMP2, Glutathione S-transferase C- | 1e-07 | |
| cd10307 | 102 | cd10307, GST_C_MetRS_N, Glutathione S-transferase | 5e-06 | |
| cd10291 | 110 | cd10291, GST_C_YfcG_like, C-terminal, alpha helica | 4e-05 | |
| cd03177 | 117 | cd03177, GST_C_Delta_Epsilon, C-terminal, alpha he | 5e-04 | |
| cd00299 | 100 | cd00299, GST_C_family, C-terminal, alpha helical d | 5e-04 | |
| pfam13410 | 69 | pfam13410, GST_C_2, Glutathione S-transferase, C-t | 0.001 | |
| cd03178 | 110 | cd03178, GST_C_Ure2p_like, C-terminal, alpha helic | 0.001 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 0.002 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 0.002 | |
| cd10294 | 123 | cd10294, GST_C_ValRS_N, Glutathione S-transferase | 0.004 |
| >gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase | Back alignment and domain information |
|---|
Score = 1447 bits (3749), Expect = 0.0
Identities = 572/723 (79%), Positives = 638/723 (88%), Gaps = 10/723 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITI---PTETSGSAPTFSFSNGSKLQGTYVLLRYI 95
ME K LSFP DSPPL VIAAAK+AG+ + P+ SGSAPT FS+G KL GT VLLRYI
Sbjct: 1 MEAK-LSFPPDSPPLAVIAAAKVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYI 59
Query: 96 GR---VGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI 152
R + FYGQ+A+E+ ++DEWLDY P FSSGSEFENAC YVD YL RTF+VG+SL+I
Sbjct: 60 ARSASLPGFYGQDAFESSQVDEWLDYAPTFSSGSEFENACEYVDGYLASRTFLVGYSLTI 119
Query: 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPT 212
DIAIWS LAG+GQRW+SLRKSKKYQNLVRWFNS+SAEYSD L+EVTA YV RG GKP
Sbjct: 120 ADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGKRGAGKPA 179
Query: 213 AAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALL 272
AAKSKE+ G A + SFEVDLP AE GKV RF PEPSGYLHIGH+KAALL
Sbjct: 180 AAKSKEKVADAGKADG---AKDKGSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALL 236
Query: 273 NQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMA 332
NQYFA+RY+G+LIVRFDDTNP+KES+EFV+N+LKDIETLGIKY+ VTYTSDYFP LMEMA
Sbjct: 237 NQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMA 296
Query: 333 ENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392
E LI++GKAYVDDTPREQM+KERMDGIESKCRNNS+EEN++LWKEMIAGSERGL+CC+RG
Sbjct: 297 EKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRG 356
Query: 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYH 452
KLDMQDPNKSLRDPVYYRCNP PHHRIGSKYKVYPTYDFACPFVDA EG+THALRSSEYH
Sbjct: 357 KLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYH 416
Query: 453 DRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512
DRNAQYYRI ED+G+RKVHI+EFSRLN VYTLLSKRKL WFV NGKV+GWDDPRFPTVQG
Sbjct: 417 DRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQG 476
Query: 513 IVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTL 572
IVRRGL +EAL QFIL QGASKNLNLMEWDKLWTINKKIIDPVCPRHTAV+++ RVLLTL
Sbjct: 477 IVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTL 536
Query: 573 TDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632
TDGP+ PFVRIIPRHKKYEGAG+KATT+T RIW+D+ADA+ IS EE+TLMDWGNAI+KE
Sbjct: 537 TDGPETPFVRIIPRHKKYEGAGKKATTFTNRIWLDYADAEAISEGEEVTLMDWGNAIIKE 596
Query: 633 ISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGED 692
I++D+ G VT LSG LHLEGSVK TKLKLTWLP+TNELV L+LV FDYLITKKKLEE ++
Sbjct: 597 ITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKLEEDDN 656
Query: 693 FLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
FLDVLNPCT+ ETAA+GDSNMRNLKRGEI+QLERKGY+RCD PF RSSKP+VLFAIPDGR
Sbjct: 657 FLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716
Query: 753 QQA 755
QQ
Sbjct: 717 QQK 719
|
Length = 722 |
| >gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 564 bits (1454), Expect = 0.0
Identities = 255/515 (49%), Positives = 339/515 (65%), Gaps = 7/515 (1%)
Query: 242 LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFV 301
L +AE GKV RF PE SG+LHIGH+KAAL+N A +Y+G+L+ RFDDTNP+KE F
Sbjct: 45 LTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFE 104
Query: 302 DNLLKDIETLGIKYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIE 360
+L D+ TLG+ ++ TY+SDY + E AE LI++G AY D TPRE+MQK R DG+
Sbjct: 105 QAILDDLATLGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVP 164
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIG 420
+K R+ S+EE +LW EM GS G E CLR K+ + + NK++RDPV YR N PH R G
Sbjct: 165 TKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQG 224
Query: 421 SKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480
+KYK YPTYDF CP +D+ EG+THALR++EYHDRN QYY + LG+RK + +FSRLNM
Sbjct: 225 TKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNM 284
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540
Y+++SKRKL V VDGWDDPRFPTV+ +VRRGL +EAL QF+ EQG SK +N ME
Sbjct: 285 EYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFME 344
Query: 541 WDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTY 600
W KLW N +I+DP PR+T V +V T+ +G HKK GEK
Sbjct: 345 WSKLWYFNTQILDPSVPRYTVVSNTLKVRCTV-EGQIHLEACEKLLHKKVPDMGEKTYYK 403
Query: 601 TKRIWIDHADAQLISANEEITLMDWGNAIVKEISR-DQDGNVTQLSGFLHLEGSVKNTKL 659
+ I++D D L+ +E+TLMDWGNA +K I R +D +T LHLEG VK TK
Sbjct: 404 SDVIFLDAEDVALLKEGDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKF 463
Query: 660 KLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG 719
KLTW+PE+ + + L +D+L+TKKK + E D++ P T++ G+ + LK+G
Sbjct: 464 KLTWVPESPKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQEVYGEEALSVLKKG 523
Query: 720 EILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQ 754
+I+QLER+GY+ D + VL AIPDGR++
Sbjct: 524 DIIQLERRGYYIVDDVTPKK----VLIAIPDGREK 554
|
Length = 601 |
| >gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 529 bits (1364), Expect = 0.0
Identities = 241/511 (47%), Positives = 343/511 (67%), Gaps = 9/511 (1%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
G++ RF PEPSGYLHIGH+KAALLN Y+A+RY+G+LI+RFDDTNP+KE EF +++++D
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+ + IK ++V++TSDYF + A LI +G AY+DDTP+E+M+KER D ESK RN S
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
EE ++++KEM +G E G CLR K+DMQ N +LRDPV +R N PHHR G+ YK YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
TYD ACP VD+ EG+THALR++EY DR+AQ++ IQ+ LG+R+ I+ F+R+N + T+LSK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547
RKL WFV NG V GWDD RFPT++GI RRG+ ++AL F+ QGAS+ + ++W K W
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAE 309
Query: 548 NKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPR--HKKYEGAGEKATTYTKRIW 605
NKK ID R A+ + LT+T+ ++ H K G G++A +
Sbjct: 310 NKKEIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVL 369
Query: 606 IDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLP 665
++ AD + I E+I L+ WG V EIS+ L G +G K K K++W+
Sbjct: 370 LEKADTEDIQLGEDIVLLRWG---VIEISKIDGD----LEGHFIPDGDFKAAKKKISWIA 422
Query: 666 ETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLE 725
+ ++ + + L FD LI K+KLEE + F D +NP T ET IGD+ ++ LK +I+QLE
Sbjct: 423 DVSDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAGLKTLKEHDIIQLE 482
Query: 726 RKGYFRCDVPFTRSSKPVVLFAIPDGRQQAV 756
R+G++R D P+ KP++LF IPDG+++A+
Sbjct: 483 RRGFYRVDRPYMGEEKPLILFMIPDGKKKAM 513
|
Length = 523 |
| >gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Score = 463 bits (1192), Expect = e-155
Identities = 163/521 (31%), Positives = 257/521 (49%), Gaps = 40/521 (7%)
Query: 216 SKEQQGVKGDVS-EKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQ 274
+EQ+ + + + K + +LP A++G+V +RFAP PSG LHIGH++AA+LN
Sbjct: 59 PEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNH 118
Query: 275 YFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN 334
+A++Y G+LI+RFDDT+P + E D +L+D+E LG+K++ V Y SD +
Sbjct: 119 EYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRK 178
Query: 335 LIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394
LI GKAYV D E+ ++ R G CR+ S+EEN++ W+EM+ G E G +R K
Sbjct: 179 LIEMGKAYVCDCRPEEFRELRNRGEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKT 238
Query: 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD- 453
D++ N ++RD V +R PH R G KY+VYPT DF+ D G+TH LR ++ D
Sbjct: 239 DLKHKNPAIRDWVIFRIVKTPHPRTGDKYRVYPTMDFSVAIDDHLLGVTHVLRGKDHIDN 298
Query: 454 -RNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512
R +Y + + +++ V L + ++ G+ GWDDPR PT++
Sbjct: 299 RRKQEYIYRYFGWEPPEFIHWGRLKIDDVRALSTSSARKGILR-GEYSGWDDPRLPTLRA 357
Query: 513 IVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTL 572
I RRG+ EA+ +F+L G N M W ++ +N+KIID R+ + ++ +
Sbjct: 358 IRRRGIRPEAIRKFMLSIGVKINDVTMSWKNIYALNRKIIDEEARRYFFIWNPVKIEI-- 415
Query: 573 TDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632
G +P P H + GE+ I++ D + E + LMD N I +
Sbjct: 416 -VGLPEPKRVERPLHPDHPEIGERVLILRGEIYVPKDDLEEG--VEPVRLMDAVNVIYSK 472
Query: 633 ISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGED 692
LEG+ K K + WLP + V + ++ D I + +E
Sbjct: 473 KELRYHS--------EGLEGARKLGKSIIHWLPA-KDAVKVKVIMPDASIVEGVIEADAS 523
Query: 693 FLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCD 733
L+V G+++Q ER G+ R D
Sbjct: 524 ELEV----------------------GDVVQFERFGFARLD 542
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases, including all known archaeal enzymes (as of 2010) may act on both tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA aminoacylation]. Length = 556 |
| >gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (972), Expect = e-122
Identities = 188/529 (35%), Positives = 280/529 (52%), Gaps = 49/529 (9%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
+V RF PEP+GYLHIGH+K+ LN AQ Y G+ +RFDDTNP KE E+VD++ +D
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 308 IETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD----GIESK 362
+ LG + + Y SDYF L E A LI++GKAYVDD E++++ R G S
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSP 147
Query: 363 CRNNSIEENMKLWKEMIAGS-ERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGS 421
R+ S+EEN+ L++ M AG G LR K+DM PN ++RDPV YR HHR G
Sbjct: 148 YRDRSVEENLDLFERMRAGEFPEG-SAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGD 206
Query: 422 KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKV-HIYEFSRLNM 480
K+ +YP YDFA DA EGITH+L + E+ D Y + ++L + YEFSRLN+
Sbjct: 207 KWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNL 266
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540
YT++SKRKL V+ VDGWDDPR PT+ G+ RRG E++ +F G +K ++++
Sbjct: 267 TYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVID 326
Query: 541 WDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGP-DKPFVRIIPRHKKYEGAGEKATT 599
L + ++ ++ PR AV+ + L +T+ P + P H + G +
Sbjct: 327 MSMLESCIREDLNENAPRAMAVL--DPLKLVITNYPEGQVEELEAPNHPEDPEMGTREVP 384
Query: 600 YTKRIWIDHADAQL--------ISANEEITLMDWGNA-IVK--EISRDQDGNVTQ----- 643
+++ ++I+ D + +E+ L NA ++K E+ +D DGN+T+
Sbjct: 385 FSRELYIEREDFMEEPPKKYFRLVPGKEVRLR---NAYVIKCEEVVKDADGNITEIHCTY 441
Query: 644 ----LSGFLHLEGSVKNTKLK--LTWLPETNEL---VNLTLVGFDYLITKKKLEEGEDFL 694
LSG K+K + W+ + + V L +D L T G+DFL
Sbjct: 442 DPDTLSG-----NPADGRKVKGTIHWVSAAHAVPAEVRL----YDRLFTVPNPAAGKDFL 492
Query: 695 DVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
D LNP + + ++ + K + Q ER+GYF D + K V
Sbjct: 493 DFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCAD-KDSTPGKLV 540
|
Length = 554 |
| >gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), catalytic domain | Back alignment and domain information |
|---|
Score = 350 bits (899), Expect = e-115
Identities = 123/315 (39%), Positives = 174/315 (55%), Gaps = 10/315 (3%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIGH++ AL N FA+ Y G+ I+RFDDT+P +E E+ +++L+D+
Sbjct: 1 KVRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD--GIESKCRN 365
+ LGIK+ E Y SD F + AE LI +G AYV E++++ER + + S R
Sbjct: 61 KWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERP 120
Query: 366 NSIEENMKLWKEMIA-GSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIP---HHRIGS 421
EE ++L++E + G G + LR K+ M+ P +RD V R P H R G
Sbjct: 121 RYDEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGL 179
Query: 422 KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNM 480
K+ YPTYDFA DA GITH LR E+ D + I + LG I+E+ RLN+
Sbjct: 180 KWDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNL 239
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNL-M 539
T LSKRKL V +V GW DP + + RRG E + +F + K+ +L
Sbjct: 240 DGTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNR 299
Query: 540 EWDKLWTINKKIIDP 554
L ++K +D
Sbjct: 300 VSKSLEAFDRKKLDW 314
|
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 314 |
| >gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 335 bits (860), Expect = e-106
Identities = 174/514 (33%), Positives = 275/514 (53%), Gaps = 23/514 (4%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V RF PEP+GYLHIGH+K+ LN +A+ Y G +RFDDTNP KE E+V+++ +D+E
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 310 TLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCR 364
LG K+E + Y+SDYF +L AE LI++G AYVD+ E++++ R G S R
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYR 120
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK 424
+ SIEEN+ L+++M G + + LR K+DM P +RDPV YR PHH+ G+K+
Sbjct: 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWC 180
Query: 425 VYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLNMVYT 483
+YP YDF DA E ITH+L + E+ D Y + +++ + + YEFSRLN+ T
Sbjct: 181 IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240
Query: 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDK 543
+LSKRKL V + V GWDDPR PT+ G+ RRG ++ +F G +K N +E +
Sbjct: 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVR 300
Query: 544 LWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKR 603
L + ++ ++ PR AVI+ V+ + + D+ + IP H GE+ +T
Sbjct: 301 LESCIREDLNENAPRAMAVIDPVEVV--IENLSDEYELATIPNHPNTPEFGERQVPFTNE 358
Query: 604 IWIDHADAQ--------LISANEEITLMDWGNAIVKEISRDQDGNVTQL-----SGFLHL 650
+ID AD + + +E+ L + + + +D G +T + + L
Sbjct: 359 FYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGK 418
Query: 651 EGSV-KNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIG 709
E + + K + W+ +++ T + +D L +DFL V+NP +
Sbjct: 419 EPADGRKVKGVIHWVSASSKYPTETRL-YDRLFKVPNPGAPDDFLSVINPESLVIKQGFM 477
Query: 710 DSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
+ ++ + + Q ER+GYF D + + K V
Sbjct: 478 EHSLGDAVANKRFQFEREGYFCLDSKESTTEKVV 511
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases [Protein synthesis, tRNA aminoacylation]. Length = 522 |
| >gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-104
Identities = 139/494 (28%), Positives = 211/494 (42%), Gaps = 39/494 (7%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR RFAP P+GYLHIGH++ ALLN +A++Y G+ I+R +DT+P +E+ E D +L+D+
Sbjct: 9 GVRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDL 68
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR---EQMQKERMDGIESKCR 364
E LG+ + E Y S+ F E AE LI +GKAYV E+M++ R E
Sbjct: 69 EWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPS 128
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC--NPIPHHRIGSK 422
+ E N+ L+++M A G +R K+ M P RD V R P + +
Sbjct: 129 YDRDERNLTLFEKM-ADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILR 187
Query: 423 YKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY 482
Y YPTY+FA D GITH LR ++ D + + E LG L
Sbjct: 188 YDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNED 247
Query: 483 -TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541
LSKRK + +V+GW P P + ++ RG EA+ F LE+G +
Sbjct: 248 GKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVS 307
Query: 542 DKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYT 601
++K +D + PR+ V V++ + +P + + GE+ T
Sbjct: 308 KSPAAFDRKKLDWLNPRYMRVDPV-EVVIENLKPHLEEEGATLPLNPEM---GERVVPLT 363
Query: 602 KR--IWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKL 659
K I I+ D EE+ L N IV E+ L S +
Sbjct: 364 KETLIEIERLDFFFFEDKEEVRLKRLANVIVAEVLEK---------DAEGLITSDWTKEN 414
Query: 660 KLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG 719
+ W+ L + + + L G ++ +T + G
Sbjct: 415 IIHWVKAVARLFGVKG-PKLFPPLRVALTGGYVEPEL------ADTIELL---------G 458
Query: 720 EILQLERKGYFRCD 733
+ +Q ER GY D
Sbjct: 459 KEVQFERLGYALAD 472
|
Length = 472 |
| >gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (800), Expect = 5e-95
Identities = 179/551 (32%), Positives = 271/551 (49%), Gaps = 43/551 (7%)
Query: 227 SEKGKAGSRPSF-----EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQ 281
+ + + P+F E DL +V RF PEP+GYLHIGH+K+ LLN A+ Y
Sbjct: 4 APRPRMLVSPNFITEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYG 63
Query: 282 GQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGK 340
G+ +R DDTNP E E+V+ + D+ LG + E + Y SDYF + AE LI+ G
Sbjct: 64 GRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGL 123
Query: 341 AYVDDTPREQMQKERMD----GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396
AYVD E++++ R G S R+ S+EEN+ L++ M AG LR K+DM
Sbjct: 124 AYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDM 183
Query: 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456
PN LRDP+ YR H+R G ++ +YP YDFA P DA EG+TH++ + E+ + A
Sbjct: 184 SSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRA 243
Query: 457 QYYRIQEDLGVR--KVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514
Y + + LG + YEF+RL + YT++SKRKL V+ G V GWDDPR PT+ G
Sbjct: 244 IYDWVLDHLGPWPPRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQR 303
Query: 515 RRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTD 574
RRG+ EA+ F + G +K + ++ L + ++ PR AV++ +V++
Sbjct: 304 RRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLP 363
Query: 575 GP-----DKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL--------ISANEEIT 621
D P+ P EG+ + +T+ ++I+ D ++ E+
Sbjct: 364 AGKVEELDLPY---WPHDVPKEGS--RKVPFTRELYIERDDFSEDPPKGFKRLTPGREVR 418
Query: 622 LMDWGNAIVKEISRDQDGNVTQLSGFLHLE-----GSVKNTKLKLTWLPETNEL---VNL 673
L E+ RD DG VT+L E + + + W+ + L V L
Sbjct: 419 LRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRL 478
Query: 674 TLVGFDYLITKKKLEEGE-DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRC 732
+D L + E + DFL+ LNP + + +R+ Q ER+GYF
Sbjct: 479 ----YDRLFKVPQPEAADEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWA 534
Query: 733 DVPFTRSSKPV 743
D +R V
Sbjct: 535 DPVDSRPDALV 545
|
Length = 771 |
| >gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 2e-94
Identities = 161/502 (32%), Positives = 254/502 (50%), Gaps = 50/502 (9%)
Query: 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKES--N 298
LP+AE GKV +RFAP PSG LH+GH++AA+LN +A+ Y G+ I+RF+DT+P +
Sbjct: 93 PLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDP 152
Query: 299 EFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDG 358
E D +L+D++ LG+K++ V SD E A LI G AYV E+ ++ R G
Sbjct: 153 EAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAG 212
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHR 418
R+ S EEN++LW++M+ G + E +R K D++ PN S+RD V +R PH R
Sbjct: 213 KPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR 272
Query: 419 IGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA--QYYRIQEDLGVRKVHIYEFS 476
+G KY+V+PTY+FA D G+TH LR + H N Q Y I + G +
Sbjct: 273 VGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKD-HIDNTEKQRY-IYDYFGWEYPETIHYG 330
Query: 477 RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNL 536
RL + +LS K+ ++ G+ GWDDPR PT++ + RRG+L EA+ + I+E G +
Sbjct: 331 RLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETD 390
Query: 537 NLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEK 596
+ W+ L+ IN+K+IDP+ R+ V D V L + P IP H GE+
Sbjct: 391 ATISWENLYAINRKLIDPIANRYFFV-RD-PVELEIEGAE--PLEAKIPLHPDRPERGER 446
Query: 597 ATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEG---- 652
++++ D + + + LMD N + +S D+
Sbjct: 447 EIPVGGKVYVSSDDLEAE--GKMVRLMDLFNVEITGVSVDK----------ARYHSDDLE 494
Query: 653 SVKNTKLKLT-WLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711
+ K + W+PE +E V + ++ +G D + +
Sbjct: 495 EARKNKAPIIQWVPE-DESVPVRVLK----------PDGGDI------------EGLAEP 531
Query: 712 NMRNLKRGEILQLERKGYFRCD 733
++ +L+ +I+Q ER G+ R D
Sbjct: 532 DVADLEVDDIVQFERFGFVRID 553
|
Length = 567 |
| >gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 3e-83
Identities = 171/505 (33%), Positives = 274/505 (54%), Gaps = 23/505 (4%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
GKV RF PEP+GYLHIGH+KA ++ A+ G +RFDDTNP E E++D++ +
Sbjct: 263 GKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEI 322
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+E +G + +TYTSDYF +L E+A LIR+G AYVD E++++ R + S R+
Sbjct: 323 VEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 382
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
IEE++KL+++M G + LR K DMQ+ N ++ D + YR PH G K+ +YP
Sbjct: 383 IEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 442
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
+YD+A VD+ E ITH+L + E+ R A YY + + LG+ + +++E+SRLN+ T++SK
Sbjct: 443 SYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVMSK 502
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLN-LMEWDKLWT 546
RKL V VDGWDDPR T+ G+ RRG+ A+ F G +++ N L+ D+L
Sbjct: 503 RKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEH 562
Query: 547 INKKIIDPVCPRHTAVIEDRRVLLT-LTDGP-DKPFVRIIPRHKKYEGAGEKATTYTKRI 604
++ ++ PR V+ +V++T L G + + P + + + +++ +
Sbjct: 563 HIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVV 622
Query: 605 WIDHADAQLIS-------ANEEITLMDWGNAI--VKEISRDQDGNVTQLSGFLHLE-GSV 654
+I+ +D +L A + L+ + I + D + V ++ E
Sbjct: 623 YIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEI----RAEYDPE 678
Query: 655 KNTKLK--LTWLPETNELVNLTLVG---FDYLITKKKLEEGEDFLDVLNPCTRFE-TAAI 708
K TK K L W+ E + V V FD L + E ED+L+ LNP ++ + A
Sbjct: 679 KKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNPQSKEVISGAY 738
Query: 709 GDSNMRNLKRGEILQLERKGYFRCD 733
++++ K G+ Q ER GYF D
Sbjct: 739 AVPSLKDAKVGDRFQFERLGYFAVD 763
|
Length = 788 |
| >gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 4e-82
Identities = 76/143 (53%), Positives = 101/143 (70%)
Query: 416 HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF 475
HHR G K+ +YPTYDFA P VD+ EGITH+L + E+ DR YY + + L + + H +EF
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 476 SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535
SRLN+ YT++SKRKLL V G VDGWDDPR PT++G+ RRG+ EA+ QFIL QG SK
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 536 LNLMEWDKLWTINKKIIDPVCPR 558
+ ++WDKL +K ++P PR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238 |
| >gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (680), Expect = 1e-79
Identities = 158/508 (31%), Positives = 265/508 (52%), Gaps = 18/508 (3%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
GK RF PEP+G+LHIGH+K+ LN A+ + G+ +R+DDTNP E ++D +++
Sbjct: 50 GKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEM 109
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
++ +G K + VT++SDYF L E A LI+ GKAYVD + ++++++R +S RN S
Sbjct: 110 VKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRS 169
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
+EEN+ L++ M G E LR K DM+ N ++RD + YR + H K+ +YP
Sbjct: 170 VEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYP 229
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
+YDF +D+ E I ++L + E+ R Y+ + E+L + + H++EFSRLN+ +LLSK
Sbjct: 230 SYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSK 289
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547
RK+ V+ G V G+DDPR T+ G+ RRG A+ +F G ++++N+++ L
Sbjct: 290 RKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENT 349
Query: 548 NKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWID 607
++ +D C R VI+ +V++ D P H + G + +T ++D
Sbjct: 350 LREDLDERCERRLMVIDPIKVVV---DNWKGEREFECPNHPRKPELGSRKVMFTDTFYVD 406
Query: 608 HADAQLISANEE----------ITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNT 657
+D + N + + L GN + K D G + + + E K
Sbjct: 407 RSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFERKDK-P 465
Query: 658 KLKLTWLPETNEL-VNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNL 716
K ++W+ T V + L ++ L+ + +FL ++ + + + + N
Sbjct: 466 KTNISWVSATACTPVEVRL--YNALLKDDRAAIDPEFLKFIDEDSEVVSHGYAEKGIENA 523
Query: 717 KRGEILQLERKGYFRCDVPFTRSSKPVV 744
K E +Q ER GYF D P TR V+
Sbjct: 524 KHFESVQAERFGYFVVD-PDTRPDHLVM 550
|
Length = 574 |
| >gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-49
Identities = 57/95 (60%), Positives = 72/95 (75%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KV RF PEP+GYLHIGH+KA LLN +A++Y G+ +RFDDTNP KE E+VD++ +D+
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 309 ETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYV 343
+ LGIK VTY SDYF L E AE LI++GKAYV
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYV 95
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238 |
| >gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), anti-codon binding domain | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-39
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 556 CPRHTAVIEDRRVLLTLTDGPDKPFVRI-IPRHKKYEGAGEKATTYTKRIWIDHADAQLI 614
PR+ AV++ V + + + P+ +P H K G + +++ I+I+ D + +
Sbjct: 1 APRYMAVLD--PVKVVIENYPEGEEEEAEVPNHPKNPELGTRKVPFSREIYIEREDFKRL 58
Query: 615 SANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLH---LEGSVKNTKLKLTWLPETNELV 671
EE+ LM N V E+ +D+DGNVT+L L G+ K + W+ + +
Sbjct: 59 KPGEEVRLMGAYNIKVTEVVKDEDGNVTELHCTYDGDSLGGARKVKG-IIHWVSADDAVP 117
Query: 672 NLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFE-TAAIGDSNMRNLKRGEILQLERKGYF 730
+ +D L + +DF +LNP + T + + + NLK G+I+Q ER GYF
Sbjct: 118 A-EVRLYDRLFKDE-----DDFDFLLNPDSLKVITEGLAEPALANLKVGDIVQFERIGYF 171
Query: 731 RCD 733
R D
Sbjct: 172 RVD 174
|
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 174 |
| >gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 402 SLRDPVYY--------RCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD 453
S R +YY H R GSKY+V+PT +FA D G+TH LR ++ D
Sbjct: 76 SDRIELYYEYARKLIEMGGAYVHPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHID 135
Query: 454 RNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGI 513
+ I E G + RL + LS K+ +++G+ +GWDDPR PT++ +
Sbjct: 136 NTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRAL 195
Query: 514 VRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
RRG+ EA+ FI+E G + + W+ L+ IN+K+IDP R
Sbjct: 196 RRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240 |
| >gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 3e-29
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
V RFAP P+GYLHIGH++ AL N FA++Y G+ I+R +DT+P + E+V+++L+D+
Sbjct: 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQG 339
+ LG+ + E SD F AE LI++G
Sbjct: 61 KWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG 92
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230 |
| >gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 108 EAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR 167
EA ++D+WLD G E E ++ YL RTF+VG+SL++ D+A++SAL +GQ+
Sbjct: 1 EAAQVDQWLDLAGSLLKGKELEALLKSLNSYLASRTFLVGYSLTLADVAVFSALYPSGQK 60
Query: 168 WDSLRKSKKYQNLVRWFNSLSA 189
K KK+ ++ RWFN +
Sbjct: 61 LSDKEK-KKFPHVTRWFNHIQN 81
|
Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of some eukaryotic AaRSs, as well as similar domains found in proteins involved in protein synthesis including Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 (AIMP2), AIMP3, and eukaryotic translation Elongation Factor 1 beta (eEF1b). AaRSs comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. AaRSs in this subfamily include GluRS from lower eukaryotes, as well as GluProRS, MetRS, and CysRS from higher eukaryotes. AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex found in higher eukaryotes. The GST_C-like domain is involved in protein-protein interactions, mediating the formation of aaRS complexes such as the MetRS-Arc1p-GluRS ternary complex in lower eukaryotes and the multi-aaRS complex in higher eukaryotes, that act as molecular hubs for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 82 |
| >gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP--AKESNEFVDNLLK 306
KV +RFAP P+G LH+GH++AA+LN +A+ Y G+ I+RFDDT+P + E D + +
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 307 DIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYV 343
D+E LG+K++ V SD E A LI G AYV
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYV 97
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240 |
| >gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 91/342 (26%), Positives = 140/342 (40%), Gaps = 64/342 (18%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIG ++ AL N FA+ G+ ++R +DT+ + E + +L+ +
Sbjct: 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY--------VDDTPREQMQKERMDGI 359
+ LGI + E Y S + A+ L+ +G AY ++ EQ +
Sbjct: 61 KWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRY 120
Query: 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD--------PNKSLRDPVYYRC 411
+ CRN EE + I R + G + D N L D V +
Sbjct: 121 DRHCRNLHNEEIENALAKGIPPVVR-FKIPQEGVVSFNDQVRGEITFQNSELDDFVILKS 179
Query: 412 NPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVH 471
+ GS PTY+FA D ITH +R ++ + I + LG +
Sbjct: 180 D-------GS-----PTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWK--- 224
Query: 472 IYEFSRLNMVYTL----LSKRK----LLWFVQNGKVD----------GW---DDPRFPTV 510
I F+ L M+ LSKR ++ F + G + GW DD F ++
Sbjct: 225 IPVFAHLPMILGEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSL 284
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKII 552
+ E + F L SK+ +W KL +N I
Sbjct: 285 E---------ELIEIFSLN-RVSKSPAKFDWKKLQWLNAHYI 316
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences [Protein synthesis, tRNA aminoacylation]. Length = 470 |
| >gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-17
Identities = 37/94 (39%), Positives = 58/94 (61%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
V RFAP P+GYLH+G+++ ALLN +A+++ G+ I+R DDT+ + E+ D + +D+
Sbjct: 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDL 61
Query: 309 ETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAY 342
+ LGI ++ SD F E AE L G+ Y
Sbjct: 62 KWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLY 95
|
Length = 445 |
| >gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+G+LHIG ++ AL N FA+++ G+ I+R +DT+ + E + +L+ +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 309 ETLGIKY-ETVTYTSDYFP 326
+ LG+ + E Y P
Sbjct: 61 KWLGLDWDEGPDVGGPYGP 79
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 239 |
| >gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 80.1 bits (199), Expect = 1e-15
Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 51/230 (22%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIG ++ AL N FA+ + G+ I+R +DT+ + + E + +L+ +
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGL 63
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPRE-------QM 351
+ LG+ + E Y P D+ E AE L+ +GKAY TP E Q
Sbjct: 64 KWLGLDWDEGPD-GGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQR 122
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD------- 398
+ +CR+ + EE +A G +R G++ D
Sbjct: 123 AAGEPPRYDGRCRDLTKEEV----AARLA---AGEPPVIRFKVPDEGEVVFDDLVRGEIE 175
Query: 399 -PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
PN L D V R + G PTY+FA D GITH +R
Sbjct: 176 FPNSELDDFVILRSD-------G-----TPTYNFAVVVDDHLMGITHVIR 213
|
Length = 476 |
| >gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAP PSG LH G AAL + A+ + G+ ++R +D +P +E D +L D+E LG
Sbjct: 9 RFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLG 68
Query: 313 IKYET-VTYTSDYFPDLMEMAENLIRQGKAY 342
+ ++ V Y S + L QG Y
Sbjct: 69 LHWDGPVLYQSQRHDAYRAALDRLRAQGLVY 99
|
Length = 299 |
| >gnl|CDD|198342 cd10309, GST_C_GluProRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional Glutamyl-Prolyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 108 EAGEIDEWLDYTPVFSSGS-EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
E E+D W+ ++ S +F +A +Y+DK L RT++VG+SL++ D A+W+AL G G+
Sbjct: 1 EQTEVDHWISFSAGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALRGNGE 60
Query: 167 RWDSLRKSKKYQNLVRWFNSLSA 189
W + + +KY N+ RWF +S+
Sbjct: 61 -WLASK--EKYVNVTRWFKFISS 80
|
Glutathione S-transferase (GST) C-terminal domain family, bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluProRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluProRS may be involved in protein-protein interactions, mediating the formation of the multi-aaRS complex in higher eukaryotes. The multi-aaRS complex acts as a molecular hub for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 81 |
| >gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 2e-14
Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAP P+G+LHIG ++ AL N FA+ + G+ ++R +DT+ + + E V+ + ++ LG
Sbjct: 8 RFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLG 67
Query: 313 IKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESK 362
+ + V + S E A L++ GKAY T +E+++++R +E+K
Sbjct: 68 LDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENK 118
|
Length = 513 |
| >gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 252 LRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESN-EFVDNLLKDIET 310
LRFAP P+G +HIG+ +AA+ N A++ ++R +DT+ KE N E D + +I
Sbjct: 2 LRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTD--KERNIEGKDKEILEILN 59
Query: 311 L-GIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKC--RNNS 367
L GI ++ + Y S+ +MAE L+ + KA+ E+++ ++ K R +
Sbjct: 60 LFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDG 119
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
EN L + + + L+ +++ V + + I I K P
Sbjct: 120 TCEN--LEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKT-P 176
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY 473
TY+FAC D I+ +R ++ + I+E LG K Y
Sbjct: 177 TYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITY 222
|
Length = 433 |
| >gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 59/255 (23%)
Query: 234 SRPSFEVD---LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD 290
SR F V +++ G VR+RFAP P+G LH+G ++ AL N FA+ G+ ++R +D
Sbjct: 27 SRRRFSVRAAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED 86
Query: 291 TNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFP-------DLM-EMAENLIRQGKA 341
T+ A+ + E + +L+D++ LG+ + E +Y P + + AE L+ G
Sbjct: 87 TDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHV 146
Query: 342 Y---VDDTPREQMQKE--------RMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390
Y D E M++E R G K S EE + E+ +G
Sbjct: 147 YPCFCTDEELEAMKEEAELKKLPPRYTG---KWATASDEE---VQAEL----AKGTPYTY 196
Query: 391 R------GKLDMQD--------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV 436
R G + + D +L D V R N P Y+F
Sbjct: 197 RFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQ------------PVYNFCVAVD 244
Query: 437 DAKEGITHALRSSEY 451
DA GITH +R+ E+
Sbjct: 245 DATMGITHVIRAEEH 259
|
Length = 535 |
| >gnl|CDD|198339 cd10306, GST_C_GluRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 111 EIDEWLDYTPVFSSGSEF---ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR 167
++ EW+D+ +F A +D +L RTF+VG+SLS+ DIA+W AL G G
Sbjct: 6 QVAEWIDFATTLLVLKDFKALSQALEELDSHLTLRTFIVGYSLSLADIAVWGALRGNGVA 65
Query: 168 WDSLRKSKKYQNLVRWFNSL 187
SL K+K Y NL RWF+ L
Sbjct: 66 -GSLIKNKVYVNLSRWFSFL 84
|
Glutathione S-transferase (GST) C-terminal domain family, Glutamyl-tRNA synthetase (GluRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluRS from lower eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluRS is involved in protein-protein interactions. This domain mediates the formation of the MetRS-Arc1p-GluRS ternary complex found in lower eukaryotes, which is considered an evolutionary intermediate between prokaryotic aaRS and the multi-aaRS complex found in higher eukaryotes. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 87 |
| >gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 425 VYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY-T 483
YP Y+F P DA GITH LR ++ D + E LG Y F RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534
LSKRKL T++ + RRG L EAL ++ G SK
Sbjct: 153 KLSKRKL----------------NTTLRALRRRGYLPEALRNYLALIGWSK 187
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230 |
| >gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
R RFAP PSG LH G AAL + A+ + G+ +VR +D +P +E D++L+ +E
Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60
Query: 310 TLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY 342
G+ + V Y S + L+ G AY
Sbjct: 61 AYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid [Protein synthesis, tRNA and rRNA base modification]. Length = 271 |
| >gnl|CDD|198338 cd10305, GST_C_AIMP3, Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 3 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-08
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 111 EIDEWLDYTPVFSSGSEFENACTYV----DKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
++D+WL+Y + + + + + YL+ RT++VGH L++ D+ ++ L +
Sbjct: 6 QVDQWLEYRVTQVAPASDKADAKSLLKELNSYLQDRTYLVGHKLTLADVVLYYGLHPIMK 65
Query: 167 RWDSLRKSKKYQNLVRWFN 185
K ++Y N+ RWF+
Sbjct: 66 DLSPQEK-EQYLNVSRWFD 83
|
Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 3 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP3, also called p18 or eukaryotic translation elongation factor 1 epsilon-1 (EEF1E1), contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It specifically interacts with methionyl-tRNA synthetase (MetRS) and is translocated to the nucleus during DNA synthesis or in response to DNA damage and oncogenic stress. In the nucleus, it interacts with ATM and ATR, which are upstream kinase regulators of p53. It appears to work against DNA damage in cooperation with AIMP2, and similar to AIMP2, AIMP3 is also a haploinsufficient tumor suppressor. AIMP3 transgenic mice have shorter lifespans than wild-type mice and they show characteristics of progeria, suggesting that AIMP3 may also be involved in cellular and organismal aging. Length = 101 |
| >gnl|CDD|198290 cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-08
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 28/108 (25%)
Query: 108 EAGEIDEWLDYT-------------P-----------VFSSGSEFENACTYVDKYLERRT 143
EA ++ +W+ + P V + + + A ++++L RT
Sbjct: 1 EAAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRT 60
Query: 144 FVVGHSLSIVDIAIWSALA-GTGQRWD-SLRKSKKYQNLVRWFNSLSA 189
++VG +++ DI + SAL G D R KKY N+ RWFN++
Sbjct: 61 YLVGERITLADIFVASALLRGFETVLDPEFR--KKYPNVTRWFNTVVN 106
|
Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF. Length = 123 |
| >gnl|CDD|198309 cd03200, GST_C_AIMP2, Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFS--SGSEFENACTY--VDKYLERRTFVVG 147
R++ R+ + A ID W+D T +F GS E A ++ L R ++VG
Sbjct: 1 ARFLFRLLGDESDDPVNATLIDSWVD-TAIFQLLEGSSKEKAAVLRALNSALGRSPWLVG 59
Query: 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++ DIA+WSA+ TG S N+ RW S
Sbjct: 60 SEPTVADIALWSAVLQTGL------ASGAPANVQRWMKSCEN 95
|
Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease. Length = 96 |
| >gnl|CDD|198340 cd10307, GST_C_MetRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of Methionyl-tRNA synthetase from higher eukaryotes | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-06
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 130 NACTYVDKYLERR-TFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLS 188
NA ++D+ L ++ T ++G LS D+ +WSAL G D + NL RWF ++S
Sbjct: 43 NALVHLDQSLLKKSTPLLGDKLSSADVVVWSALYPLGT--DKSALPENLDNLRRWFQNVS 100
Query: 189 A 189
Sbjct: 101 T 101
|
Glutathione S-transferase (GST) C-terminal domain family, Methionyl-tRNA synthetase (MetRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of MetRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. MetRS is a class I aaRS, containing a Rossman fold catalytic core. It recognizes the initiator tRNA as well as the Met-tRNA for protein chain elongation. The GST_C-like domain of MetRS from higher eukaryotes is likely involved in protein-protein interactions, to mediate the formation of the multi-aaRS complex that acts as a molecular hub to coordinate protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 102 |
| >gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWS-ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+D+ L + ++ G SI DIAIW Q D + NL RWF L+A
Sbjct: 52 LDRRLAKSKYLAGDEYSIADIAIWPWVARHEWQGID----LADFPNLKRWFERLAA 103
|
Glutathione S-transferase (GST) C-terminal domain family, YfcG-like subfamily; composed of the Escherichia coli YfcG and related proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. YfcG is one of nine GST homologs in Escherichia coli. It is expressed predominantly during the late stationary phase where the predominant form of GSH is glutathionylspermidine (GspSH), suggesting that YfcG might interact with GspSH. It has very low or no GSH transferase or peroxidase activity, but displays a unique disulfide bond reductase activity that is comparable to thioredoxins (TRXs) and glutaredoxins (GRXs). However, unlike TRXs and GRXs, YfcG does not contain a redox active cysteine residue and may use a bound thiol disulfide couple such as 2GSH/GSSG for activity. The crystal structure of YcfG reveals a bound GSSG molecule in its active site. The actual physiological substrates for YfcG are yet to be identified. Length = 110 |
| >gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 118 YTPVFSSGSEF--------ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRW 168
Y P+ G+E E A +++ +LE +V G L+I D+++ + ++ +
Sbjct: 25 YYPILFGGAEPPEEKLDKLEEALEFLETFLEGSDYVAGDQLTIADLSLVATVSTLEVVGF 84
Query: 169 DSLRKSKKYQNLVRWFNSLSAE 190
D KY N+ W+ L A
Sbjct: 85 D----LSKYPNVAAWYERLKAL 102
|
Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress. Length = 117 |
| >gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the Glutathione S-transferase family | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS----KKYQNLVR 182
E +++ L R ++ G S+ D+A+ LA R ++L +Y L
Sbjct: 40 ELPALLAALEQLLAGRPYLAGDQFSLADVALAPVLA----RLEALGPYYDLLDEYPRLKA 95
Query: 183 WFNSL 187
W++ L
Sbjct: 96 WYDRL 100
|
Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases. Length = 100 |
| >gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWF 184
++ E A +++ L +++G S+ DIA+ ALA R L Y NL W
Sbjct: 9 AQLERALDALEERLADGPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGYPNLRAWL 67
|
This domain is closely related to pfam00043. Length = 69 |
| >gnl|CDD|198288 cd03178, GST_C_Ure2p_like, C-terminal, alpha helical domain of Ure2p and related Glutathione S-transferase-like proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIW---SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+DK L R ++ G SI DIA++ G S +Y N+ RW ++A
Sbjct: 52 LDKRLSDRPYLAGEEYSIADIALYPWTHYADLGGFADLS-----EYPNVKRWLERIAA 104
|
Glutathione S-transferase (GST) C-terminal domain family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p, YfcG and YghU from Escherichia coli, and related GST-like proteins. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. YfcG and YghU are two of the nine GST homologs in the genome of Escherichia coli. They display very low or no GSH transferase, but show very good disulfide bond oxidoreductase activity. YghU also shows modest organic hydroperoxide reductase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Length = 110 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 261 YLHIGHSKAA----LLNQYFAQRYQG------QLIVRFDDT--NPAKESNEFVDNL---- 304
Y HIGH++ A +L +Y RY G Q I DD A+E+ E V +
Sbjct: 34 YCHIGHARTAIVFDVLRRYL--RYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERF 91
Query: 305 ----LKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYVDD 345
+D++ L + + +++ +++E E LI +G AYV D
Sbjct: 92 IEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSD 137
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE 296
P+GYLHIGH + + + AQ Y+ + I DD
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|198327 cd10294, GST_C_ValRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of vertebrate Valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 123 SSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
S +E + +D YL+ RT++VG ++++ DIA+ AL + + + N+ R
Sbjct: 40 RSLAELQRVLKVLDCYLKLRTYLVGEAITLADIAVACALLLPFKYVLDPARRESLLNVTR 99
Query: 183 WFNS 186
WF +
Sbjct: 100 WFLT 103
|
Glutathione S-transferase (GST) C-terminal domain family, Valyl-tRNA synthetase (ValRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of human ValRS and its homologs from other vertebrates such as frog and zebrafish. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. They typically form large stable complexes with other proteins. ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF. The GST_C-like domain of ValRS from higher eukaryotes is likely involved in protein-protein interactions, to mediate the formation of the multi-aaRS complex that acts as a molecular hub to coordinate protein synthesis. ValRSs from prokaryotes and lower eukaryotes, such as fungi and plants, do not appear to contain this GST_C-like domain. Length = 123 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| PLN02907 | 722 | glutamate-tRNA ligase | 100.0 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 100.0 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 100.0 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 100.0 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 100.0 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 100.0 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 100.0 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 100.0 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 100.0 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 100.0 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 100.0 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 100.0 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 100.0 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 100.0 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 100.0 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 100.0 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 100.0 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 100.0 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 100.0 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 100.0 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 100.0 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 100.0 | |
| PF03950 | 174 | tRNA-synt_1c_C: tRNA synthetases class I (E and Q) | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.98 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.97 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.95 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.95 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.95 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.95 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 99.95 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 99.94 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 99.94 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.94 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 99.91 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 99.91 | |
| PLN02473 | 214 | glutathione S-transferase | 99.89 | |
| PLN02395 | 215 | glutathione S-transferase | 99.88 | |
| PRK09481 | 211 | sspA stringent starvation protein A; Provisional | 99.88 | |
| PRK13972 | 215 | GSH-dependent disulfide bond oxidoreductase; Provi | 99.88 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.87 | |
| PRK10542 | 201 | glutathionine S-transferase; Provisional | 99.86 | |
| PRK11752 | 264 | putative S-transferase; Provisional | 99.86 | |
| PRK10357 | 202 | putative glutathione S-transferase; Provisional | 99.85 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.85 | |
| PRK15113 | 214 | glutathione S-transferase; Provisional | 99.84 | |
| TIGR01262 | 210 | maiA maleylacetoacetate isomerase. Maleylacetoacet | 99.83 | |
| KOG0406 | 231 | consensus Glutathione S-transferase [Posttranslati | 99.82 | |
| COG0625 | 211 | Gst Glutathione S-transferase [Posttranslational m | 99.82 | |
| KOG0867 | 226 | consensus Glutathione S-transferase [Posttranslati | 99.82 | |
| KOG0868 | 217 | consensus Glutathione S-transferase [Posttranslati | 99.81 | |
| PRK10387 | 210 | glutaredoxin 2; Provisional | 99.79 | |
| PTZ00057 | 205 | glutathione s-transferase; Provisional | 99.79 | |
| PLN02378 | 213 | glutathione S-transferase DHAR1 | 99.74 | |
| PLN02817 | 265 | glutathione dehydrogenase (ascorbate) | 99.73 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.72 | |
| TIGR00862 | 236 | O-ClC intracellular chloride channel protein. Thes | 99.71 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.71 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 99.69 | |
| KOG1695 | 206 | consensus Glutathione S-transferase [Posttranslati | 99.69 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.68 | |
| TIGR02182 | 209 | GRXB Glutaredoxin, GrxB family. This model include | 99.67 | |
| PLN02224 | 616 | methionine-tRNA ligase | 99.65 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.65 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 99.64 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 99.64 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 99.63 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 99.61 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 99.6 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 99.55 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 99.55 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.53 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.52 | |
| KOG4420 | 325 | consensus Uncharacterized conserved protein (Gangl | 99.5 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 99.49 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.48 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 99.47 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 99.42 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 99.39 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 99.34 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 99.33 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.33 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.28 | |
| cd03200 | 96 | GST_C_JTV1 GST_C family, JTV-1 subfamily; composed | 99.19 | |
| cd03196 | 115 | GST_C_5 GST_C family, unknown subfamily 5; compose | 99.16 | |
| KOG3029 | 370 | consensus Glutathione S-transferase-related protei | 99.07 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 99.05 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 99.03 | |
| COG0435 | 324 | ECM4 Predicted glutathione S-transferase [Posttran | 99.02 | |
| cd03188 | 114 | GST_C_Beta GST_C family, Class Beta subfamily; GST | 99.02 | |
| COG2999 | 215 | GrxB Glutaredoxin 2 [Posttranslational modificatio | 99.0 | |
| cd03186 | 107 | GST_C_SspA GST_N family, Stringent starvation prot | 98.99 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 98.98 | |
| KOG1422 | 221 | consensus Intracellular Cl- channel CLIC, contains | 98.97 | |
| KOG4244 | 281 | consensus Failed axon connections (fax) protein/gl | 98.97 | |
| cd03187 | 118 | GST_C_Phi GST_C family, Class Phi subfamily; compo | 98.96 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 98.95 | |
| cd03178 | 113 | GST_C_Ure2p_like GST_C family, Ure2p-like subfamil | 98.94 | |
| cd03190 | 142 | GST_C_ECM4_like GST_C family, ECM4-like subfamily; | 98.94 | |
| cd03181 | 123 | GST_C_EFB1gamma GST_C family, Gamma subunit of Elo | 98.91 | |
| cd03189 | 119 | GST_C_GTT1_like GST_C family, Saccharomyces cerevi | 98.9 | |
| cd03041 | 77 | GST_N_2GST_N GST_N family, 2 repeats of the N-term | 98.9 | |
| cd03185 | 126 | GST_C_Tau GST_C family, Class Tau subfamily; GSTs | 98.89 | |
| cd03177 | 118 | GST_C_Delta_Epsilon GST_C family, Class Delta and | 98.89 | |
| cd03191 | 121 | GST_C_Zeta GST_C family, Class Zeta subfamily; GST | 98.88 | |
| cd03183 | 126 | GST_C_Theta GST_C family, Class Theta subfamily; c | 98.87 | |
| cd03203 | 120 | GST_C_Lambda GST_C family, Class Lambda subfamily; | 98.87 | |
| cd03182 | 117 | GST_C_GTT2_like GST_C family, Saccharomyces cerevi | 98.86 | |
| cd03037 | 71 | GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub | 98.83 | |
| PF14497 | 99 | GST_C_3: Glutathione S-transferase, C-terminal dom | 98.8 | |
| cd03207 | 103 | GST_C_8 GST_C family, unknown subfamily 8; compose | 98.8 | |
| cd03077 | 79 | GST_N_Alpha GST_N family, Class Alpha subfamily; G | 98.8 | |
| cd03180 | 110 | GST_C_2 GST_C family, unknown subfamily 2; compose | 98.79 | |
| cd03059 | 73 | GST_N_SspA GST_N family, Stringent starvation prot | 98.78 | |
| cd03050 | 76 | GST_N_Theta GST_N family, Class Theta subfamily; c | 98.77 | |
| cd03048 | 81 | GST_N_Ure2p_like GST_N family, Ure2p-like subfamil | 98.77 | |
| cd03058 | 74 | GST_N_Tau GST_N family, Class Tau subfamily; GSTs | 98.77 | |
| cd03045 | 74 | GST_N_Delta_Epsilon GST_N family, Class Delta and | 98.77 | |
| cd03076 | 73 | GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar | 98.77 | |
| PF13417 | 75 | GST_N_3: Glutathione S-transferase, N-terminal dom | 98.76 | |
| cd03052 | 73 | GST_N_GDAP1 GST_N family, Ganglioside-induced diff | 98.75 | |
| KOG2903 | 319 | consensus Predicted glutathione S-transferase [Pos | 98.75 | |
| cd03051 | 74 | GST_N_GTT2_like GST_N family, Saccharomyces cerevi | 98.74 | |
| cd03080 | 75 | GST_N_Metaxin_like GST_N family, Metaxin subfamily | 98.73 | |
| cd03044 | 75 | GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo | 98.73 | |
| cd03057 | 77 | GST_N_Beta GST_N family, Class Beta subfamily; GST | 98.72 | |
| cd03053 | 76 | GST_N_Phi GST_N family, Class Phi subfamily; compo | 98.72 | |
| cd03039 | 72 | GST_N_Sigma_like GST_N family, Class Sigma_like; c | 98.7 | |
| cd03184 | 124 | GST_C_Omega GST_C family, Class Omega subfamily; G | 98.7 | |
| PF00043 | 95 | GST_C: Glutathione S-transferase, C-terminal domai | 98.7 | |
| cd03060 | 71 | GST_N_Omega_like GST_N family, Omega-like subfamil | 98.69 | |
| PF02798 | 76 | GST_N: Glutathione S-transferase, N-terminal domai | 98.69 | |
| cd03198 | 134 | GST_C_CLIC GST_C family, Chloride Intracellular Ch | 98.69 | |
| cd03179 | 105 | GST_C_1 GST_C family, unknown subfamily 1; compose | 98.68 | |
| cd03206 | 100 | GST_C_7 GST_C family, unknown subfamily 7; compose | 98.68 | |
| cd03049 | 73 | GST_N_3 GST_N family, unknown subfamily 3; compose | 98.67 | |
| cd03047 | 73 | GST_N_2 GST_N family, unknown subfamily 2; compose | 98.67 | |
| cd03040 | 77 | GST_N_mPGES2 GST_N family; microsomal Prostaglandi | 98.65 | |
| cd03042 | 73 | GST_N_Zeta GST_N family, Class Zeta subfamily; GST | 98.65 | |
| cd03209 | 121 | GST_C_Mu GST_C family, Class Mu subfamily; GSTs ar | 98.63 | |
| cd03056 | 73 | GST_N_4 GST_N family, unknown subfamily 4; compose | 98.62 | |
| PF13410 | 69 | GST_C_2: Glutathione S-transferase, C-terminal dom | 98.62 | |
| cd03055 | 89 | GST_N_Omega GST_N family, Class Omega subfamily; G | 98.6 | |
| cd03046 | 76 | GST_N_GTT1_like GST_N family, Saccharomyces cerevi | 98.6 | |
| cd03075 | 82 | GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar | 98.59 | |
| KOG3027 | 257 | consensus Mitochondrial outer membrane protein Met | 98.59 | |
| cd03195 | 114 | GST_C_4 GST_C family, unknown subfamily 4; compose | 98.57 | |
| cd03204 | 111 | GST_C_GDAP1 GST_C family, Ganglioside-induced diff | 98.56 | |
| cd03208 | 137 | GST_C_Alpha GST_C family, Class Alpha subfamily; G | 98.55 | |
| cd03210 | 126 | GST_C_Pi GST_C family, Class Pi subfamily; GSTs ar | 98.54 | |
| PF13409 | 70 | GST_N_2: Glutathione S-transferase, N-terminal dom | 98.53 | |
| cd03201 | 121 | GST_C_DHAR GST_C family, Dehydroascorbate Reductas | 98.5 | |
| cd03061 | 91 | GST_N_CLIC GST_N family, Chloride Intracellular Ch | 98.48 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 98.48 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 98.44 | |
| cd03054 | 72 | GST_N_Metaxin GST_N family, Metaxin subfamily; com | 98.4 | |
| cd03079 | 74 | GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me | 98.38 | |
| cd03038 | 84 | GST_N_etherase_LigE GST_N family, Beta etherase Li | 98.35 | |
| cd00299 | 100 | GST_C_family Glutathione S-transferase (GST) famil | 98.33 | |
| cd03202 | 124 | GST_C_etherase_LigE GST_C family, Beta etherase Li | 98.3 | |
| cd03043 | 73 | GST_N_1 GST_N family, unknown subfamily 1; compose | 98.3 | |
| cd03193 | 88 | GST_C_Metaxin GST_C family, Metaxin subfamily; com | 98.28 | |
| cd00570 | 71 | GST_N_family Glutathione S-transferase (GST) famil | 98.27 | |
| cd03194 | 114 | GST_C_3 GST_C family, unknown subfamily 3; compose | 98.2 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 98.18 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 98.17 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 98.17 | |
| cd03192 | 104 | GST_C_Sigma_like GST_C family, Class Sigma_like; c | 98.13 | |
| KOG3028 | 313 | consensus Translocase of outer mitochondrial membr | 98.08 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 97.99 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 97.96 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 97.94 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 97.93 | |
| cd03205 | 98 | GST_C_6 GST_C family, unknown subfamily 6; compose | 97.88 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 97.88 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 97.86 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 97.86 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 97.86 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 97.79 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 97.78 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 97.77 | |
| cd03211 | 126 | GST_C_Metaxin2 GST_C family, Metaxin subfamily, Me | 97.75 | |
| cd03197 | 149 | GST_C_mPGES2 GST_C family; microsomal Prostaglandi | 97.73 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 97.73 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 97.72 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 97.65 | |
| cd03212 | 137 | GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, | 97.63 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 97.61 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 97.58 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 97.46 | |
| cd03078 | 73 | GST_N_Metaxin1_like GST_N family, Metaxin subfamil | 97.46 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.46 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 97.32 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 97.25 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 97.24 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 96.85 | |
| PF14834 | 117 | GST_C_4: Glutathione S-transferase, C-terminal dom | 96.83 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 96.79 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 96.79 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 96.76 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 96.72 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 96.71 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 96.61 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 96.35 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 96.3 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 96.05 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.98 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 95.85 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 95.81 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 95.67 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 95.29 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 95.22 | |
| PF10568 | 72 | Tom37: Outer mitochondrial membrane transport comp | 95.07 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 95.0 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 94.89 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 94.74 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 94.67 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 94.65 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 94.43 | |
| PF09635 | 122 | MetRS-N: MetRS-N binding domain; InterPro: IPR0182 | 94.2 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 93.91 | |
| PF04399 | 132 | Glutaredoxin2_C: Glutaredoxin 2, C terminal domain | 93.9 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 93.79 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 93.75 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 93.7 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 93.57 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 93.52 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 93.47 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 93.46 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 93.35 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 93.23 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 93.17 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 92.95 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 92.89 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 92.73 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 92.24 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 92.19 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 92.01 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 91.71 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 91.63 | |
| cd03199 | 128 | GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) sub | 91.44 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 91.29 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 91.24 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 91.06 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 90.74 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 90.5 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 89.91 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 89.91 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 89.81 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 88.93 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 88.04 | |
| KOG1668 | 231 | consensus Elongation factor 1 beta/delta chain [Tr | 87.95 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 87.67 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 86.57 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 85.7 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 85.31 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 84.94 | |
| cd02156 | 105 | nt_trans nucleotidyl transferase superfamily. nt_t | 83.58 |
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-168 Score=1458.06 Aligned_cols=714 Identities=79% Similarity=1.291 Sum_probs=658.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---CCccEEEeCCCcEEechHHHHHHHHHhC---CCCCCCHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYGQNAYEAG 110 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p~~~~era 110 (758)
|+|+|| +.+++++.+++++|++.|++|+.... |++|+|+++||.+|+||.||++||++.+ .|+|.++.+++
T Consensus 1 ~~~kLy---~~~~S~~~~v~~~L~~lgv~~e~~~~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erA 77 (722)
T PLN02907 1 MEAKLS---FPPDSPPLAVIAAAKVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESS 77 (722)
T ss_pred CeEEEE---ECCCCChHHHHHHHHHcCCCcEEeecCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHH
Confidence 667887 66677899999999999999998654 9999999889999999999999999997 68999999999
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 111 EIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 111 ~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++|+.|+........+...++.||.+|+.++||+|+++|+|||++|+.+......+........||||.||+++|.++
T Consensus 78 qV~qWL~~~~~~~~~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~ar 157 (722)
T PLN02907 78 QVDEWLDYAPTFSSGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAE 157 (722)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhC
Confidence 99999999877555667888999999999999999999999999999999865422222222357899999999999999
Q ss_pred ccch--HHHHHHhhhcccCCCCCcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeeccCCCCCCCccchhhH
Q 043341 191 YSDS--LDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSK 268 (758)
Q Consensus 191 ~~p~--~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar 268 (758)
|+ |+.+.+++...+++.++...+.+...+ +. .++++.++.++++.+||+++.++|||||||||||||||||||
T Consensus 158 --Ps~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~v~tRFaPsPtG~LHiG~ar 232 (722)
T PLN02907 158 --YSDILNEVTAAYVGKRGAGKPAAAKSKEKVA--DA-GKADGAKDKGSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAK 232 (722)
T ss_pred --CCcchhhHHHHHHHhhccccccccchhhhcc--cc-ccchhccccccccccCccCCCCceEEeeCCCCCCcccHHHHH
Confidence 98 788888876655554333332222211 11 112234455788899999988999999999999999999999
Q ss_pred HHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCch
Q 043341 269 AALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR 348 (758)
Q Consensus 269 ~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~ 348 (758)
+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||++++||+|++.|+++|++||++|+||+|+|+.
T Consensus 233 ~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~ 312 (722)
T PLN02907 233 AALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPR 312 (722)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHHHHcCCeeecCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccc
Q 043341 349 EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPT 428 (758)
Q Consensus 349 e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~Pt 428 (758)
+++++.+..+|+|+||++++++|+++|++|++|.+.++++|+|+|+|+.++|.+++|+|++|+++.+|+++||+|++|||
T Consensus 313 ~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~Pt 392 (722)
T PLN02907 313 EQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPT 392 (722)
T ss_pred HHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccccCCccceeec
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcc
Q 043341 429 YDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFP 508 (758)
Q Consensus 429 Y~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~ 508 (758)
|||||+||||+|||||||||.||+.|+++|.|++++|||+.|++|+|+||++.++|||||++.+||++|+++|||||||+
T Consensus 393 Y~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~p 472 (722)
T PLN02907 393 YDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFP 472 (722)
T ss_pred cCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEEEecCCCCCceeEeecCCC
Q 043341 509 TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHK 588 (758)
Q Consensus 509 tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp 588 (758)
|+++||||||+|++|++||..+|++++++.|||++|+++||++||+.+||+|||.+..+|+|+|+|++...+.+.+|+||
T Consensus 473 t~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~~v~~~i~~~~~~~~~~~~p~hp 552 (722)
T PLN02907 473 TVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTLTDGPETPFVRIIPRHK 552 (722)
T ss_pred cHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCCEEEEEEcCCCCCceeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999996444999999987666777999999
Q ss_pred CCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCC
Q 043341 589 KYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETN 668 (758)
Q Consensus 589 ~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~ 668 (758)
+++++|+|.+.|+++||||++||.+|++|++||||+|||++|+++.+|++|+|+++.|++++++++||+|++|||||+..
T Consensus 553 ~~~~~g~r~~~~~~~i~i~~~D~~~l~~g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~ 632 (722)
T PLN02907 553 KYEGAGKKATTFTNRIWLDYADAEAISEGEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTN 632 (722)
T ss_pred CCCccceEEEEECCcEEEEcchHhhcCCCCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccccCCCcCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 669 ELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 669 ~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
+.++|++++||+||++++|+++++|+++|||+|+++..||+||++.++++|++|||||+|||+||+.++++++|+|||+|
T Consensus 633 ~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~i 712 (722)
T PLN02907 633 ELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAI 712 (722)
T ss_pred CceEEEEEccccccccCCCccccchhHhcCCCceeEEEEEEcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred CCCCCccccC
Q 043341 749 PDGRQQAVFK 758 (758)
Q Consensus 749 p~g~~~~~~~ 758 (758)
|||++|+|.+
T Consensus 713 p~~~~~~~~~ 722 (722)
T PLN02907 713 PDGRQQKSGK 722 (722)
T ss_pred CCCCcCCCCC
Confidence 9999999975
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-159 Score=1264.07 Aligned_cols=700 Identities=54% Similarity=0.955 Sum_probs=636.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---CCccEEEeCCCcEEechHHHHHHHHHhC----CCCCCCHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYIGRVG----NFYGQNAYEA 109 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---g~vP~L~~~~g~~l~ES~aIl~yL~~~~----~L~p~~~~er 109 (758)
|+|+|. .....++.+..++++..+++++.... ..++ .+..+|..+.++..+..|.++.. .|||.+ .++
T Consensus 1 ~~~~l~---~n~~~ppia~~~~~~a~~~~~~~~~s~s~k~~~-~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~ 75 (712)
T KOG1147|consen 1 MGMKLS---ANLEAPPIAYIAALAASAVNVDGKSSFSEKLVD-KQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDR 75 (712)
T ss_pred CCceee---cCCCCCchHHHHHHHhhcCCccCcchhhhhhhh-hhccccccccCCccchhhhhhhcccCHhHcCCc-ccH
Confidence 456665 56677777777777777766665433 5566 44558889999999999977554 688877 899
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh
Q 043341 110 GEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 110 a~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
++++.|++|+.. ..-..+...+..|+.+|..++||+|.++|+||+++|.++.........+.....+.+|.|||+....
T Consensus 76 ~~vd~w~~~s~~-~~~~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~ 154 (712)
T KOG1147|consen 76 SQVDHWVSFSST-FSFDEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEF 154 (712)
T ss_pred HHHHHHHHHhhh-cchHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhH
Confidence 999999999977 4457899999999999999999999999999999999999753333334334578899999995555
Q ss_pred hccchHHHHHHhhhcccCCCCCcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeeccCCCCCCCccchhhHH
Q 043341 190 EYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKA 269 (758)
Q Consensus 190 ~~~p~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~ 269 (758)
. ++.+.+++.+...+++... .|. .+...+++++.++.+||++++|+|+|||||+|+||||||||++
T Consensus 155 ~--~a~~~v~~t~~~~~k~~~a----~k~--------k~s~~~~~~~~~ev~lP~ae~GkVv~RFPPEpSGyLHIGHAKA 220 (712)
T KOG1147|consen 155 Q--EAHNKVLATLVELKKSVNA----GKK--------KESGQKKKKENKEVDLPGAEMGKVVTRFPPEPSGYLHIGHAKA 220 (712)
T ss_pred H--HHHHHHHHHHHhhcccccC----ccc--------cccccccccCCccccCCccccCceEEecCCCCCceeehhhHHH
Confidence 5 5555555555222111111 111 1111133445678899999999999999999999999999999
Q ss_pred HHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchH
Q 043341 270 ALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPRE 349 (758)
Q Consensus 270 al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e 349 (758)
||+|++||..|+|++|+|||||||+++..+|++.|++||..|||++|.++|+||||+.+.+++.+||+.|+||+++++.|
T Consensus 221 ALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E 300 (712)
T KOG1147|consen 221 ALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTE 300 (712)
T ss_pred HHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccc
Q 043341 350 QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTY 429 (758)
Q Consensus 350 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY 429 (758)
+||.+|..|.++.||++++|+|+++|++|.+|...|..+|+|+|+||.++|++|||||+|||+..+|||+|++|++||||
T Consensus 301 ~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTY 380 (712)
T KOG1147|consen 301 QMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTY 380 (712)
T ss_pred HHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 430 DFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 430 ~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
||||+|.|+++||||.+|+.|++++.++|+|++++||++.|++|+|+|||+..+.|||||+.+||++|+|.|||||||||
T Consensus 381 DFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpT 460 (712)
T KOG1147|consen 381 DFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPT 460 (712)
T ss_pred ccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEEEecCCCCCceeEeecCCCC
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKK 589 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~ 589 (758)
++|++|||++.|+|++|++.+|.|++-..++|+++|++|++.|||+|||++||...+.|.++|+|+|+.+.....|.|||
T Consensus 461 VrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~~~~V~v~i~~~~~~~~~~~~PkHkK 540 (712)
T KOG1147|consen 461 VRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVKEDRVEVTITNGPQEEYIEVSPKHKK 540 (712)
T ss_pred hHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeeccCceEEEecCCCCCcchhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999987779999999888776678899999
Q ss_pred CccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCCC
Q 043341 590 YEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNE 669 (758)
Q Consensus 590 ~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~ 669 (758)
|+++|++.+.|+++||||+.|++.|.+||+||||+|||++|++|++|++|+|+++.+++++++|+||||.|++|+++.+.
T Consensus 541 n~~lG~K~v~~~~~I~le~~Da~~l~~gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~ 620 (712)
T KOG1147|consen 541 NPELGEKKVIYSKKILLEQADAEALKEGEEVTLMNWGNAIIKKINKDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTND 620 (712)
T ss_pred CcccCccceeeccceeEeccchhhhcCCcEEEEEeccceeeEEeeccCCceEEEEEEEeccCCccccccceeEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred eeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcC
Q 043341 670 LVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIP 749 (758)
Q Consensus 670 ~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip 749 (758)
.+++.+.+||+|+|++++++++||.++|||||+++..+++|++++++|.||+|||||+|||+||.+.+..++|+|||+||
T Consensus 621 ~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~~~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IP 700 (712)
T KOG1147|consen 621 SVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKETLMLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIP 700 (712)
T ss_pred ccceEEeechhhcchhhcccchhHHHhcCCCccccchhccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCccc
Q 043341 750 DGRQQAV 756 (758)
Q Consensus 750 ~g~~~~~ 756 (758)
|||+.+.
T Consensus 701 dg~t~~~ 707 (712)
T KOG1147|consen 701 DGKTVPR 707 (712)
T ss_pred CCCcCCC
Confidence 9999654
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-143 Score=1192.90 Aligned_cols=511 Identities=47% Similarity=0.834 Sum_probs=490.9
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTY 320 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~ 320 (758)
.||+++.++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||++++
T Consensus 3 ~L~~a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~ 82 (523)
T PLN03233 3 ALEGAIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSF 82 (523)
T ss_pred cCCCCCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcc
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCC
Q 043341 321 TSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPN 400 (758)
Q Consensus 321 ~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~ 400 (758)
||+|++.|+++|++||++|+||+|+|+++++++.|..+++|+||++++++++++|++|.+|...++++++|+|+++.++|
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 99999999999999999999999999999999999889999999999999999999999999889999999999999999
Q ss_pred CCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeec
Q 043341 401 KSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480 (758)
Q Consensus 401 ~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~ 480 (758)
.+++|||++|+++++||++||+|++||||||||+||||+|||||||||.||+.+|++|.|++++|||+.|.+++|+||++
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~ 242 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNF 242 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcch
Q 043341 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHT 560 (758)
Q Consensus 481 ~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~ 560 (758)
.|+|||||++++||++|.+.|||||||+||++||||||+|+||++|+..+|++++.+.++|++|+++||++|++.|||+|
T Consensus 243 ~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m 322 (523)
T PLN03233 243 MNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFM 322 (523)
T ss_pred CCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEecCCCCCce--eEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCC
Q 043341 561 AVIEDRRVLLTLTDGPDKPF--VRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQD 638 (758)
Q Consensus 561 ~v~~~~~v~~~i~~~~~~~~--~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~ 638 (758)
||++.+||+|+|+|.+.... .+.+|+||+++++|+|.+.|+++||||++||.+|++|++||||+|||++|+++++|.+
T Consensus 323 ~V~~~~pv~v~i~n~~~~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~~l~~g~~vrL~~~~~i~~~~~~~d~~ 402 (523)
T PLN03233 323 AIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKIDGDLE 402 (523)
T ss_pred EEccCCcEEEEecCCCCccceeccccccCCCCCCCceEEEEECCcEEEEHhHHhhcCCCCEEEeCceeeEEEEEEEecCc
Confidence 99966799999999876532 2389999999999999999999999999999999999999999999999999998866
Q ss_pred CCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCC
Q 043341 639 GNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKR 718 (758)
Q Consensus 639 g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~ 718 (758)
|++ +++++++|+|++|||||+..+.++|++++||+||++++|++++||+++|||+|+.+.+||+|++++++++
T Consensus 403 ~~~-------~~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~~~~~e~~~~~~~~ 475 (523)
T PLN03233 403 GHF-------IPDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAGLKTLKE 475 (523)
T ss_pred eEE-------eeCCCCcccccEEEEcCCCCCccceEEEecccccCCCCCCcccChhhhcCCCceEEEeEEEchhHhhCCC
Confidence 643 3567889999999999854568999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeEEEeecCCCCCCCcEEEEEcCCCCCccccC
Q 043341 719 GEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQAVFK 758 (758)
Q Consensus 719 g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip~g~~~~~~~ 758 (758)
|++|||||+|||+||+.++++++|+|||+||||++|.|+.
T Consensus 476 ~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~~~~ 515 (523)
T PLN03233 476 HDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKAMSG 515 (523)
T ss_pred CCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCcccccc
Confidence 9999999999999999888889999999999999999873
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-141 Score=1182.58 Aligned_cols=517 Identities=49% Similarity=0.838 Sum_probs=494.2
Q ss_pred CCCCCCCCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCC
Q 043341 235 RPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIK 314 (758)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~ 314 (758)
.+++.++||+++.++|+|||||||||||||||||+|++||++||+|||+|+||||||||.|+.++|+++|++||+|||++
T Consensus 38 ~~~~~~~L~~a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~ 117 (601)
T PTZ00402 38 EENDKLQLTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVS 117 (601)
T ss_pred cccccccCCCCCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEee
Q 043341 315 YET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGK 393 (758)
Q Consensus 315 ~d~-~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k 393 (758)
||+ +++||+|++.|+++|++||++|+||||+|+++++++.+..|++++||++++++++++|++|.+|...++.+++|+|
T Consensus 118 wDe~~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~k 197 (601)
T PTZ00402 118 WDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAK 197 (601)
T ss_pred CCCceeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEe
Confidence 995 8999999999999999999999999999999999998888999999999999999999999999877889999999
Q ss_pred ecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEe
Q 043341 394 LDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY 473 (758)
Q Consensus 394 ~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~ 473 (758)
+++.++|.+++|||++|++..+|+++||+|+||||||||||||||+|||||||||.||+.+|++|.||+++|||+.|.++
T Consensus 198 id~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~ 277 (601)
T PTZ00402 198 ISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVE 277 (601)
T ss_pred cccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 474 EFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 474 ~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
||++|++.|+|||||++..+|++|++.||||||+|||++|||||++|++|++||..+|++++++.|||++|+++||++|+
T Consensus 278 h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~ 357 (601)
T PTZ00402 278 DFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILD 357 (601)
T ss_pred EEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhccCceEEEecCCCCCc-eeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEee
Q 043341 554 PVCPRHTAVIEDRRVLLTLTDGPDKP-FVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632 (758)
Q Consensus 554 ~~~~r~~~v~~~~~v~~~i~~~~~~~-~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~ 632 (758)
+.|||+|||+ +|++|+|+|.+... +.+.+|+||+++++|+|.+.|+++||||++||.+|+||++||||+|||+.|.+
T Consensus 358 ~~a~R~maV~--~p~kv~i~~~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~l~~g~~vrL~~~gn~~i~~ 435 (601)
T PTZ00402 358 PSVPRYTVVS--NTLKVRCTVEGQIHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVALLKEGDEVTLMDWGNAYIKN 435 (601)
T ss_pred hcCCceEEEc--CCCEEEEEECCCCcceEeeccCCCCCcccCceEEEECCeEEEEhhhHhhcCCCCEEEEeccCCEEEEE
Confidence 9999999999 69998888876543 46689999999999999999999999999999999999999999999999888
Q ss_pred eee-CCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeec
Q 043341 633 ISR-DQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711 (758)
Q Consensus 633 ~~~-~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~ 711 (758)
+++ +++|+|+++.+.+++++++||+|++|||||+....+++++|+||+||++++|+++++|+++|||+|+.+..||+||
T Consensus 436 ~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~~~~~E~ 515 (601)
T PTZ00402 436 IRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQEVYGEE 515 (601)
T ss_pred EEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCCCccccHHHhcCCCChheEEEEEch
Confidence 775 4689999999999999999999999999997556889999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcCCCCCcccc
Q 043341 712 NMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQAVF 757 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip~g~~~~~~ 757 (758)
++.++++|++|||||+|||+||+ . ..+.|||+||||++|.++
T Consensus 516 ~~~~~~~~~~~QfeR~Gyf~~D~-~---~~~~vl~~ipdg~~~~~~ 557 (601)
T PTZ00402 516 ALSVLKKGDIIQLERRGYYIVDD-V---TPKKVLIAIPDGREKVNH 557 (601)
T ss_pred hHhhCCCCCEEeEEEeEEEEEec-C---CCCeEEEECCCCcccccc
Confidence 99999999999999999999998 3 233489999999999764
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-138 Score=1152.03 Aligned_cols=509 Identities=36% Similarity=0.601 Sum_probs=485.6
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
+|+++..++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||+.|| .++
T Consensus 21 dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~~~~ 100 (554)
T PRK05347 21 DLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSGELR 100 (554)
T ss_pred HHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCCCce
Confidence 4555566789999999999999999999999999999999999999999999999999999999999999999996 789
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcC----CCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD----GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|+++|++|+++|+||+|+|+++++++.|.. |++|+||++++++++++|++|.+|.+.++++|+|+|+|
T Consensus 101 ~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~vlR~Kid 180 (554)
T PRK05347 101 YASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKID 180 (554)
T ss_pred eeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEEEEEEee
Confidence 99999999999999999999999999999999988764 89999999999999999999999998889999999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEee
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYE 474 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~ 474 (758)
+.++|++++|+|++|++..+||++|++|++||||||||+||||+|||||||||.||.+|+++|.|++++||+. .|++|+
T Consensus 181 ~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~ 260 (554)
T PRK05347 181 MASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYE 260 (554)
T ss_pred ccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 899999
Q ss_pred eeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 475 ~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
|+||++.|+|||||++.+||++|.+.|||||||+||++||||||+|+||++|+..+|+|++++.++|++|+++||++|++
T Consensus 261 F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nRk~ld~ 340 (554)
T PRK05347 261 FSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIREDLNE 340 (554)
T ss_pred EEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhccCceEEEecCCCCC-ceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeec
Q 043341 555 VCPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDW 625 (758)
Q Consensus 555 ~~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~ 625 (758)
.|||+|||. +||+|+|+|.+.. .+.+.+|+||+++++|+|.+.|+++||||++||. +|++|++||||++
T Consensus 341 ~a~R~m~V~--~pv~v~i~n~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~~vrL~~~ 418 (554)
T PRK05347 341 NAPRAMAVL--DPLKLVITNYPEGQVEELEAPNHPEDPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNA 418 (554)
T ss_pred CCCceEEEc--CCeEEEEEeCCCCceEEEEecCCCCCCcCceEEEEEcCeEEEEhHHhhccccccccccCCCCEEEecCE
Confidence 999999999 6999999998654 3567999999999999999999999999999998 6999999999999
Q ss_pred cceEEeeeeeCCCCCeEEEEEEEecC------CCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCC
Q 043341 626 GNAIVKEISRDQDGNVTQLSGFLHLE------GSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNP 699 (758)
Q Consensus 626 ~n~~~~~~~~~~~g~i~~~~~~~~~~------~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~ 699 (758)
+|++|+++++|++|.|+++.|+|+++ +++||+|++|||||+. ++++|++++||+||++++|++++||+++|||
T Consensus 419 ~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~-~~v~~~v~~yd~Lf~~~~p~~~~~~~~~iN~ 497 (554)
T PRK05347 419 YVIKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAA-HAVPAEVRLYDRLFTVPNPAAGKDFLDFLNP 497 (554)
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecC-CCEeEEEEEeccccCCCCCCccccHhHhcCC
Confidence 99999999999999999999999986 2678999999999964 6899999999999999999999999999999
Q ss_pred CCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCc
Q 043341 700 CTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQ 754 (758)
Q Consensus 700 ~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~ 754 (758)
+|+.+..||+|+++.++++|++|||||+|||+||. ++++++| || +.+|||+.|
T Consensus 498 ~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~-v~n~~v~l~d~~~k 553 (554)
T PRK05347 498 DSLVIKQGFVEPSLADAKPEDRFQFEREGYFCADK-DSTPGKL-VFNRTVGLRDSWAK 553 (554)
T ss_pred CceEEEeEEEcHHHhhCCCCCEEEEEEeeEEEecC-CCCCCCe-EEEeeeecccccCC
Confidence 99999999999999999999999999999999995 7777887 56 779999866
|
|
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-135 Score=1123.82 Aligned_cols=502 Identities=30% Similarity=0.512 Sum_probs=484.1
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHH
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFP 326 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~ 326 (758)
.|+|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|+++|+|||++||++++||+|++
T Consensus 49 ~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~ 128 (574)
T PTZ00437 49 GGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFD 128 (574)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.|+++|.+||++|+||+|+|+++++++.|..+.+|+||++++++||++|++|.+|.+.++++|+|+|+||.++|++|+|+
T Consensus 129 ~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~ 208 (574)
T PTZ00437 129 QLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDF 208 (574)
T ss_pred HHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccccc
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLS 486 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klS 486 (758)
|++|+...+||++||+|++||||||||+||||+|||||||||.||.++++.|.|++++|+|..|.+|+|++||+.+++||
T Consensus 209 v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LS 288 (574)
T PTZ00437 209 IAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLS 288 (574)
T ss_pred eeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccC
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDR 566 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~ 566 (758)
||++..||++|+|.||||||++||++||||||+|+||++|+..+|+|++++.++|++|+++||++||+.|+|+|||+ +
T Consensus 289 KRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~--d 366 (574)
T PTZ00437 289 KRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDERCERRLMVI--D 366 (574)
T ss_pred ccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccc---------cCCCC-EEEEeeccceEEeeeeeC
Q 043341 567 RVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL---------ISANE-EITLMDWGNAIVKEISRD 636 (758)
Q Consensus 567 ~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~---------l~~g~-~v~L~~~~n~~~~~~~~~ 636 (758)
|++|+|+|.+. .+.+.+|+||+++++|+|.+.|++.||||++||.. |++|+ .||||++|||+|+++++|
T Consensus 367 Pv~v~I~n~~~-~~~~~~p~hP~~~~~G~R~i~~~~~iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~~d 445 (574)
T PTZ00437 367 PIKVVVDNWKG-EREFECPNHPRKPELGSRKVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVD 445 (574)
T ss_pred ceEEEEecCCC-ceEEeccCCCCCCcCceEEEEEcCeEEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEEEC
Confidence 99999999764 46678999999999999999999999999999983 88997 899999999999999999
Q ss_pred CCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCC
Q 043341 637 QDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNL 716 (758)
Q Consensus 637 ~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~ 716 (758)
++|+|+++.|.++++. .+|+|++|||||+. ++++|++++||+||++++|+++++|+++|||+|+.+..||+|+++.++
T Consensus 446 ~~g~v~~~~~~~d~~~-~~k~k~~IhWvs~~-~~v~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~~g~~E~~~~~~ 523 (574)
T PTZ00437 446 AAGQPSVIHVDIDFER-KDKPKTNISWVSAT-ACTPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVSHGYAEKGIENA 523 (574)
T ss_pred CCCCEEEEEEEecccc-cccCCCeEEEeecC-CceeEEEEeccccccCCCCCccccHhhhCCCCceEEEEEEEchhhhhC
Confidence 9999999999999974 68888899999974 689999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCcc
Q 043341 717 KRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQA 755 (758)
Q Consensus 717 ~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~ 755 (758)
++|++|||||+|||+||+ ++++++|| | +.++||+.|.
T Consensus 524 ~~~~~~QfeR~Gyf~vD~-ds~~~~~v-fNr~v~Lkd~~~K~ 563 (574)
T PTZ00437 524 KHFESVQAERFGYFVVDP-DTRPDHLV-MNRVLGLREDKEKA 563 (574)
T ss_pred CCCCeEEEEEeEEEEeCC-CCCCCCEE-EEeeeEcccccccc
Confidence 999999999999999998 77788874 6 7799998765
|
|
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-133 Score=1155.50 Aligned_cols=512 Identities=33% Similarity=0.540 Sum_probs=484.2
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
.++....++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++|| .++
T Consensus 23 ~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~~~~ 102 (771)
T PRK14703 23 DLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLY 102 (771)
T ss_pred HHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCCCce
Confidence 3455556789999999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc----CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM----DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|+++|++||++|+||+|+|+++++++.|. .|++|+||++++++++++|++|.+|.+.++++|+|+|+|
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~vlR~Kid 182 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKID 182 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeEEEEEee
Confidence 9999999999999999999999999999999998886 689999999999999999999999998888999999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC-CC-cceEe
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG-VR-KVHIY 473 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg-~~-~p~~~ 473 (758)
|.++|+.++|||+||+++.+||++||+|++||||||||+||||+|||||||||.||.+|+++|.|++++|| +. .|.+|
T Consensus 183 ~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~ 262 (771)
T PRK14703 183 MSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQY 262 (771)
T ss_pred ccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 44 49999
Q ss_pred eeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 474 EFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 474 ~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
+|+|||+.+++||||+++.||++|.+.||||||++||++||||||+|+||++|+..+|++++++.++|++|+++||++||
T Consensus 263 ~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R~~ld 342 (771)
T PRK14703 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLN 342 (771)
T ss_pred EEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhccCceEEEecCCCCC-ceeEeecCCCCC-ccccceEEeeeeeeeecccccc--------ccCCCCEEEEe
Q 043341 554 PVCPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKY-EGAGEKATTYTKRIWIDHADAQ--------LISANEEITLM 623 (758)
Q Consensus 554 ~~~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~-~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~ 623 (758)
+.|||+|||+ +|++|+|+|.++. .+.+.+|+||++ +++|+|.+.|++.||||++||. +|++|++||||
T Consensus 343 ~~a~R~~~V~--~p~~v~i~n~~~~~~~~~~~p~hp~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~vrL~ 420 (771)
T PRK14703 343 RRAPRVMAVL--DPLKVVIENLPAGKVEELDLPYWPHDVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLR 420 (771)
T ss_pred cCCCceEEEc--CCeEEEEEeCCCCceEEEeccCCCCCCccCceEEEEEcCeEEEEhhHhhccccccccccCCCCEEEec
Confidence 9999999999 5999999998654 467799999997 8999999999999999999998 79999999999
Q ss_pred eccceEEeeeeeCCCCCeEEEEEEEecCCC-----ccccceeEEeecCCCCeeEEEEEcccccccccccC-CCccccccC
Q 043341 624 DWGNAIVKEISRDQDGNVTQLSGFLHLEGS-----VKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLE-EGEDFLDVL 697 (758)
Q Consensus 624 ~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~-----~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~-~~~~~~~~~ 697 (758)
++|||+|+++++|++|+|++++|+|++++. .+|+|++|||||+. ++++|++++||+||++++|+ +++||+++|
T Consensus 421 ~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~-~~v~~~vr~Yd~Lf~~~~p~~~~~~~~~~l 499 (771)
T PRK14703 421 GAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAK-HALPAEVRLYDRLFKVPQPEAADEDFLEFL 499 (771)
T ss_pred ceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecC-CCeeEEEEecccccCCCCCCccccchHhhc
Confidence 999999999999999999999999999764 46788999999964 68999999999999999998 678999999
Q ss_pred CCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCccc
Q 043341 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQAV 756 (758)
Q Consensus 698 n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~~ 756 (758)
||+|+.+..||+||++.++++|++|||||+|||+||+.+++++++ || +.++|+..|.+
T Consensus 500 N~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~-vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 500 NPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDAL-VFNRIITLKDTWGARA 560 (771)
T ss_pred CCCCceeEccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCe-EEEeecccCccccccc
Confidence 999999999999999999999999999999999999877777776 57 55778776543
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-132 Score=1132.92 Aligned_cols=506 Identities=32% Similarity=0.518 Sum_probs=479.8
Q ss_pred ccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 246 EIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 246 ~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
..|+|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||.++|||+|+
T Consensus 261 t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~~~~qSd~f 340 (788)
T PLN02859 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYF 340 (788)
T ss_pred cCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCCcccccHhH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRD 405 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D 405 (758)
+.+|++|.+||++|+||+|+|+++++++.|..+.+|+||++++++|+++|++|.+|.+.++++|+|+|+||.++|..|+|
T Consensus 341 ~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD 420 (788)
T PLN02859 341 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYD 420 (788)
T ss_pred HHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeee
Confidence 98889999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccc
Q 043341 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLL 485 (758)
Q Consensus 406 ~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~kl 485 (758)
+|++|+...+|+++||+|++|||||||||||||+|||||||||.||.+|+++|.|++++|||..|.+|||++||+.|++|
T Consensus 421 ~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~rLn~~~t~L 500 (788)
T PLN02859 421 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVM 500 (788)
T ss_pred ceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCCcEEeeeeECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccc-cccHHHHHHHHHhhccccCCcchhhhc
Q 043341 486 SKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLN-LMEWDKLWTINKKIIDPVCPRHTAVIE 564 (758)
Q Consensus 486 SKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~-~~d~~~l~~~n~~~l~~~~~r~~~v~~ 564 (758)
|||++..||++|+|.||||||++||++||||||+|+||++|+..+|++++.. .|+|+.|+++|++.|++.++|+|||+
T Consensus 501 SKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~l~~~a~R~maV~- 579 (788)
T PLN02859 501 SKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVL- 579 (788)
T ss_pred cCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHhhCCcCcchheec-
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred cCceEEEecCCCCCc-eeEee---cCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceEEee
Q 043341 565 DRRVLLTLTDGPDKP-FVRII---PRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAIVKE 632 (758)
Q Consensus 565 ~~~v~~~i~~~~~~~-~~~~~---~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~~~~ 632 (758)
+|++|+|+|.+... +.+.. |.||+++++|+|.++|++.||||++||+ +|+||++||||+.++|+|++
T Consensus 580 -dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~~~rL~pg~~V~L~~~~~i~~~~ 658 (788)
T PLN02859 580 -HPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTD 658 (788)
T ss_pred -CCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccccceecCCCCEEEEcceeEEEEEE
Confidence 59999999987644 44445 6666678999999999999999999998 69999999999988999999
Q ss_pred ee-eCCCCCeEEEEEEEecCCCccccceeEEeecCCC---CeeEEEEEcccccccccccCCCccccccCCCCCeeeEE-E
Q 043341 633 IS-RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETN---ELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETA-A 707 (758)
Q Consensus 633 ~~-~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~---~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~-~ 707 (758)
++ +|++|.|++|+|+|+++++ .|+|++|||||+.+ ++++|++|+||+||++++|++.+||+++|||+|+.+.. +
T Consensus 659 ~~~~d~~g~v~el~~~~d~~~~-~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p~~~~~~~~~iNp~S~~v~~~a 737 (788)
T PLN02859 659 VVLADDNETVVEIRAEYDPEKK-TKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNPQSKEVISGA 737 (788)
T ss_pred EEEeCCCCCEEEEEEEEccCCC-CccCceEEeeecCCCCCCceeEEEEeehhhcCCCCCcccccHHHhCCCCccEEEece
Confidence 88 8999999999999999875 47799999999642 57999999999999999999989999999999999875 8
Q ss_pred EeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCccc
Q 043341 708 IGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQAV 756 (758)
Q Consensus 708 ~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~~ 756 (758)
++|+++.++++||+|||||.|||+||+ +++++++ || +.++|+..|.+
T Consensus 738 ~~e~~~~~~~~~~~~QfeR~GYF~~D~-ds~~~~~-vfNr~v~Lkd~~~k~~ 787 (788)
T PLN02859 738 YAVPSLKDAKVGDRFQFERLGYFAVDK-DSTPEKL-VFNRTVTLKDSYGKGG 787 (788)
T ss_pred EEcHhHhhCCCCCeEEEEeeeEEeccC-CCCCCCe-EEEeeeeccccccccC
Confidence 999999999999999999999999996 7787877 46 66899988765
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-132 Score=1100.38 Aligned_cols=498 Identities=35% Similarity=0.563 Sum_probs=476.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~~ 328 (758)
|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++|| .+++||+|++.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHh----cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
+++|++||++|+||+|+|+++++++.| ..|++|+||++++++++++|++|.+|.+.++++|+|+|+|+.++|..++
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 999999999999999999999999988 4789999999999999999999999998888999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeeecccc
Q 043341 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYT 483 (758)
Q Consensus 405 D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~~~~~ 483 (758)
|+|++|+...+|+++||+|++||||||||+||||+|||||||||.||..|+.+|.|+++++++. .|.+|+|+||++.|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhh
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 563 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~ 563 (758)
|||||++..+|++|+|.|||||||+||++||||||+|+||++|++.+|.+++...++|..|+++|++.+++.++|+|||.
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceEEeeeee
Q 043341 564 EDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAIVKEISR 635 (758)
Q Consensus 564 ~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~~~~~~~ 635 (758)
+|++|+|+|.+...+...+|+||+++++|+|.+.|++.||||++||. +|+||++||||++|||+|+++++
T Consensus 321 --d~~kl~i~~~~~~~~~~~~p~~p~~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~~~ 398 (522)
T TIGR00440 321 --DPVEVVIENLSDEYELATIPNHPNTPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEK 398 (522)
T ss_pred --ccceEEEecCCCCceEEeccCCCCChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEEEe
Confidence 58999999986544566899999999999999999999999999998 69999999999999999999999
Q ss_pred CCCCCeEEEEEEEecC------CCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEe
Q 043341 636 DQDGNVTQLSGFLHLE------GSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIG 709 (758)
Q Consensus 636 ~~~g~i~~~~~~~~~~------~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~ 709 (758)
|++|.|++++|+|+++ +++||+|++|||||+. ++++|++|+||+||++++|+++++|+++|||+|+.+.+||+
T Consensus 399 d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~-~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~~~~~~~ 477 (522)
T TIGR00440 399 DAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSAS-SKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLVIKQGFM 477 (522)
T ss_pred cCCCCEEEEEEEEccccccCCccccccCCcEEEeeecC-CCeeEEEEecccccCCCCCCccccHhhhCCCCceEEEEEEE
Confidence 9999999999999986 4678999999999964 68999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCC
Q 043341 710 DSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDG 751 (758)
Q Consensus 710 e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g 751 (758)
|+++.++++|++|||||+|||+||++++++++| || +.+|||
T Consensus 478 E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~-v~Nr~v~l~d~ 521 (522)
T TIGR00440 478 EHSLGDAVANKRFQFEREGYFCLDSKESTTEKV-VFNRTVSLKDA 521 (522)
T ss_pred chhHhhCCCCCEEEEEEeEEEEEccCCCCCCCe-EEEeeeecCCC
Confidence 999999999999999999999999878888888 46 456665
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-122 Score=1030.66 Aligned_cols=483 Identities=38% Similarity=0.670 Sum_probs=447.4
Q ss_pred CCCCCCCCCCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhC
Q 043341 233 GSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312 (758)
Q Consensus 233 ~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LG 312 (758)
+++.++.++||++++++|||||||||||||||||||+|++||++|++|||+|+||||||||+|+.++|+++|++||+|||
T Consensus 77 ~~~~~~~~~L~~a~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLG 156 (560)
T TIGR00463 77 EKKAKGLIELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLG 156 (560)
T ss_pred cccccCCCCCCCCcCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcC
Confidence 34456778999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe
Q 043341 313 IKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392 (758)
Q Consensus 313 i~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~ 392 (758)
+.||++++||+|++.|+++|++||++|+||+|+|+++++++.|..|++|+||++++++|+++|++|.+|.+.++++|+|+
T Consensus 157 i~~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~ 236 (560)
T TIGR00463 157 VKGDEVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRA 236 (560)
T ss_pred CCCCccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceE
Q 043341 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHI 472 (758)
Q Consensus 393 k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~ 472 (758)
|+|+.++|++++|+|++|++.++||++||+|++||||||||+||||+|||||||||.||..+|++|.+++.+|||..|.+
T Consensus 237 K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~ 316 (560)
T TIGR00463 237 KTDYKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEF 316 (560)
T ss_pred ECCCcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccc-cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 473 YEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 473 ~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
+||.++.+.+. +||||.....+.+|.+.||||||++||++|||+|++|+||++|+..+|++++.+.++|++|+++||++
T Consensus 317 ~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~ 396 (560)
T TIGR00463 317 IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKI 396 (560)
T ss_pred EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHH
Confidence 99988887754 88887755555569999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEe
Q 043341 552 IDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVK 631 (758)
Q Consensus 552 l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~ 631 (758)
||+.|||+|||+ +|++|+|+|.+. .....+|+||+++++|+|.+.|++.||||++||.. .+|++||||+|||++|+
T Consensus 397 id~~a~R~~~V~--~p~~v~i~~~~~-~~~~~~p~hp~~~~~G~r~v~~~~~i~i~~~D~~~-~~g~~vrL~~~~ni~~~ 472 (560)
T TIGR00463 397 IDPIARRYFFIW--NPVKIEIEGAPE-PKIVERPLHPDNPEVGERKLIYYGEIYVDKDDLEV-IEGEEVRLMDWGNVIIT 472 (560)
T ss_pred hCcCCCceEEEc--CCcEEEEecCCC-CeeEEccCCCCCCCCceEEEEECCeEEEEHHHHhh-CCCCEEEEeecccEEEE
Confidence 999999999999 699999999763 34568999999999999999999999999999986 69999999999999999
Q ss_pred eeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeec
Q 043341 632 EISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711 (758)
Q Consensus 632 ~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~ 711 (758)
+++++ |. +.+..+++++.++++++|||||+ .+.++|++++||+|++ .|++|+
T Consensus 473 ~~~~~--~~---~~~~~~~~~~~~~~~~~i~Wv~~-~~~v~~~~~~~d~l~~----------------------~~~~E~ 524 (560)
T TIGR00463 473 KKNDD--GS---MYHSLNLEGARKKGKHIIHWLPD-KDAVKVKVIMPDHLIT----------------------EGRLEE 524 (560)
T ss_pred EEeCC--Cc---EEeccccccccccCCCEEEECcC-CCceEEEEEcCccccc----------------------cCccCc
Confidence 88654 43 34667778888889999999996 4689999999999853 478888
Q ss_pred cccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcC
Q 043341 712 NMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIP 749 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip 749 (758)
++...++||+|||||+|||+||+. ..+++++++ .||
T Consensus 525 ~~~~~~~~~~vQfeR~Gy~~~D~~-~~~~~~~~f-~h~ 560 (560)
T TIGR00463 525 DASFEEVGDIIQFERFGFYRLDSA-DKDGKVYVY-THP 560 (560)
T ss_pred chhhcCCCCEEEEEEeEEEEEccC-CCCCceEEE-ecC
Confidence 888889999999999999999994 334566655 665
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-121 Score=1021.91 Aligned_cols=526 Identities=31% Similarity=0.509 Sum_probs=469.2
Q ss_pred cccChhHHHHHHHHHhhccchHHHHHHhhhcccCCCCCcccchhhhcccCCCc-cccccCCCCCCCCCCCCccccCeeee
Q 043341 174 SKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDV-SEKGKAGSRPSFEVDLPDAEIGKVRL 252 (758)
Q Consensus 174 ~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~v~~ 252 (758)
+...|.|..-...+... ++++++++...... ..+.+-.. ...+. ..+++++++....++||+++.++|+|
T Consensus 34 ~~~~pelr~~~~ei~~~----v~~~v~~vn~ms~e----e~~~~l~~-~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~t 104 (567)
T PRK04156 34 MGENPELRSKAKEIIPI----VKEVVEEVNSLSLE----EQRERLEE-LAPELLEEEEEKKEEKKGLPPLPNAEKGKVVM 104 (567)
T ss_pred hccChhhhhhhhhHHHH----HHHHHHHHhcCCHH----HHHHHHHH-hChhhhhhhhhhcccccCCCCCCCCCCCeEEE
Confidence 56778888777776554 77787777543211 11111111 11111 11222233444567899999999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCc--ccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 043341 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP--AKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330 (758)
Q Consensus 253 RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~--~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~ 330 (758)
||||||||||||||||+|++||++||+|||+|+|||||||| +|+.++|+++|++||+|||++||++++||+|++.|++
T Consensus 105 RFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~ 184 (567)
T PRK04156 105 RFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYE 184 (567)
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEE
Q 043341 331 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYR 410 (758)
Q Consensus 331 ~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R 410 (758)
+|++||++|+||+|+|+++++++.+..|++|+||++++++++++|++|.+|.+.++++++|+|+++.+.|++++|||+||
T Consensus 185 ~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R 264 (567)
T PRK04156 185 YARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFR 264 (567)
T ss_pred HHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEE
Confidence 99999999999999999999999998899999999999999999999999998888999999999999999999999999
Q ss_pred eCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhh
Q 043341 411 CNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKL 490 (758)
Q Consensus 411 ~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~ 490 (758)
++..+||++|++|++||||||||+||||+|||||||||.||+.|+++|.|++++|||+.|.++||++|++.|+|||||++
T Consensus 265 ~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~~ 344 (567)
T PRK04156 265 IVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLSTSKI 344 (567)
T ss_pred EcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEE
Q 043341 491 LWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLL 570 (758)
Q Consensus 491 ~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~ 570 (758)
..+|++|.+.||||||++||++||++|++|+||++|++.+|++++++.|+|++|+++||++||+.|+|+|||. +||+|
T Consensus 345 ~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~--~pv~v 422 (567)
T PRK04156 345 RKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVR--DPVEL 422 (567)
T ss_pred hhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEEC--CceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 69999
Q ss_pred EecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEec
Q 043341 571 TLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHL 650 (758)
Q Consensus 571 ~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~ 650 (758)
+|+|.+ +..+.+|+||+++++|+|.+.|++.||||++||..+ |++||||+||||+|+++. .+.|+|++
T Consensus 423 ~i~~~~--~~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~~~~--g~~vrL~~~~nv~~~~~~--------~~~~~~~~ 490 (567)
T PRK04156 423 EIEGAE--PLEAKIPLHPDRPERGEREIPVGGKVYVSSDDLEAE--GKMVRLMDLFNVEITGVS--------VDKARYHS 490 (567)
T ss_pred EEcCCC--ceEEEcCCCCCCCCCceEEEEECCeEEEEHHHHhhc--CCEEEeeeEEEEEEEEEE--------EEEEEEcC
Confidence 999953 567799999999999999999999999999999977 999999999999998765 46788887
Q ss_pred C--CCccccc-eeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEe
Q 043341 651 E--GSVKNTK-LKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERK 727 (758)
Q Consensus 651 ~--~~~kk~k-~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~ 727 (758)
+ .+.||+| ++|||||+. ++++|+++.++. .+.+|++||++.++++|++|||||+
T Consensus 491 ~~~~~~~k~~~~~i~Wv~~~-~~v~~~v~~~~~----------------------~~~~g~~E~~~~~~~~~~~~QfeR~ 547 (567)
T PRK04156 491 DDLEEARKNKAPIIQWVPED-ESVPVRVLKPDG----------------------GDIEGLAEPDVADLEVDDIVQFERF 547 (567)
T ss_pred CccccccccCCCEEEEccCC-CCeeEEEECCCc----------------------eEEEEEEchhHhhCCCCCEEEEEEe
Confidence 5 3567777 589999974 689999998531 3567999999999999999999999
Q ss_pred eEEEeecCCCCCCCcEEEEEc
Q 043341 728 GYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 728 Gyf~~D~~~~~~~~~~~~~~i 748 (758)
|||+||+. .+..++.+|.
T Consensus 548 Gf~~~D~~---~~~~~~~~f~ 565 (567)
T PRK04156 548 GFVRIDSV---EDDEVVAYFA 565 (567)
T ss_pred EEEEEecC---CCCeEEEEEe
Confidence 99999995 2445666663
|
|
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-122 Score=990.37 Aligned_cols=497 Identities=33% Similarity=0.517 Sum_probs=473.8
Q ss_pred ccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 246 EIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 246 ~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
..|+|+|||||+|||+||||||++..+|+.||+.+||.+.||||||||+++.++|.++|.+...|||.+|-.++|+||||
T Consensus 245 TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 245 TGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred hCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcC-CCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMD-GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
+.++++|.+||++|+||+|+|+.|++++.|.. ...|++|++++||||++|++|++|.+++++++||+|.++++.|+.|.
T Consensus 325 dqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~ 404 (764)
T KOG1148|consen 325 DQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEATLRMKQDLESGNPQMW 404 (764)
T ss_pred HHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcChhheeeeeeccCCCcccc
Confidence 99999999999999999999999999998853 34799999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccc
Q 043341 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTL 484 (758)
Q Consensus 405 D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~k 484 (758)
|+|.||+...+|||+|++|++||||||++|+.|+++.|||++|+.||..+...|.|++.+|++..|.+|+|+|||+.++.
T Consensus 405 DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~P~qwEYgRLNv~~tv 484 (764)
T KOG1148|consen 405 DLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYCPVQWEYGRLNVTYTV 484 (764)
T ss_pred ccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhcccchhhhhceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhc
Q 043341 485 LSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIE 564 (758)
Q Consensus 485 lSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~ 564 (758)
|||||+..||.+|+|.||||||+.||.+|||||++|+||.+||...|++.+..++|...|++..|++|+..+||.|+|+
T Consensus 485 ~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VRd~Ln~tapR~M~Vl- 563 (764)
T KOG1148|consen 485 VSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVRDYLNDTAPRLMFVL- 563 (764)
T ss_pred eehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHHHHHhccCcceEEee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCCCCc-eeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceE-Eeeee
Q 043341 565 DRRVLLTLTDGPDKP-FVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAI-VKEIS 634 (758)
Q Consensus 565 ~~~v~~~i~~~~~~~-~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~-~~~~~ 634 (758)
+|++|+|+|.+... +.+.+|..|.+|.+|.+.++|++.||||++||+ +|+||+.|+|++.|.++ +..+.
T Consensus 564 -eplkVti~N~~~~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpgQpVGLr~~~~vi~~~~vv 642 (764)
T KOG1148|consen 564 -EPLKVTIENLSDDYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPGQPVGLRYAGYVIRVVKVV 642 (764)
T ss_pred -cceEEEEecCCcchhhhccCCCCCCCCccccccccccceEEEEcccccccCCcchhccCCCCcceeEeecceEEEEEEe
Confidence 59999999987653 577999999999999999999999999999998 59999999999999877 47788
Q ss_pred eCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCC-CccccccCCCCCeeeEE-EEeecc
Q 043341 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEE-GEDFLDVLNPCTRFETA-AIGDSN 712 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~-~~~~~~~~n~~s~~~~~-~~~e~~ 712 (758)
+|+.|.|++|.++|++....+|+|+.|||||+ .++.||+|+|++||+++||++ .+.|++.|||+|+.++. +++|..
T Consensus 643 kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse--~Pv~vEvRlye~LFks~NP~d~~e~fLsDiNp~S~~V~~~a~~D~~ 720 (764)
T KOG1148|consen 643 KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE--SPVKVEVRLYEQLFKSENPADLNEVFLSDINPDSLVVVKGALADKS 720 (764)
T ss_pred eCCCCceEEEEEEecccccccCCceeEEeccC--CCeEeehhHHHHHhccCCccchhHHHHHhcCccchhhhhhhhhhhh
Confidence 99999999999999985556899999999997 579999999999999999997 45799999999999986 799999
Q ss_pred ccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 713 MRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 713 ~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
+...+++|+|||||.|||+||+ +++.++ +|++.+
T Consensus 721 ~~~a~v~DrFQfeRiGYF~VDk-DSt~~k-LVfNRt 754 (764)
T KOG1148|consen 721 ISDAKVYDRFQFERIGYFCVDK-DSTPGK-LVFNRT 754 (764)
T ss_pred hcccchhhhHhhhhcceeEecC-CCCCce-EEEEeE
Confidence 9999999999999999999999 776665 556653
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-86 Score=734.27 Aligned_cols=445 Identities=32% Similarity=0.425 Sum_probs=373.5
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~~ 328 (758)
|||||||||||||||||||+||+||++||+|||+|||||||||++|+.++|+++|+++|+|||++||+ +++||+|++.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred HHHHHHHHHhCceeccCCchH---HHHHHhcCCC--C-CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCC
Q 043341 329 MEMAENLIRQGKAYVDDTPRE---QMQKERMDGI--E-SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKS 402 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e---~~~~~~~~~~--~-~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~ 402 (758)
++++++||++|+||+|.|+++ ++|+.+..+. + +.+|+ ++++..|++|..... ++++|+|+|+++.+.+..
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 999999999999999999995 4555443322 2 44444 566677778877333 789999999998777778
Q ss_pred CCCcEEEEeCCCC-Ccc-cCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeec
Q 043341 403 LRDPVYYRCNPIP-HHR-IGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480 (758)
Q Consensus 403 ~~D~vl~R~~~~~-~~~-~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~ 480 (758)
++|+|.+|+...+ |++ ++++|+||||||||||||||+|||||||||+||++||++|.|||++|||+.|.++||++|..
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999998877 888 99999999999999999999999999999999999999999999999999999999988776
Q ss_pred c-cccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcc
Q 043341 481 V-YTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRH 559 (758)
Q Consensus 481 ~-~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~ 559 (758)
. |+|||||++..-+......||+||+++|+.+++++|+++++++.|++..|++..+....+..+..+|++.|+.+++|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 4 349999998544444477899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCceEEEecCCCC--CceeEeecCCCCCccccceEEeeee--eeeeccccccccCCCCEEEEeeccceEEeee-e
Q 043341 560 TAVIEDRRVLLTLTDGPD--KPFVRIIPRHKKYEGAGEKATTYTK--RIWIDHADAQLISANEEITLMDWGNAIVKEI-S 634 (758)
Q Consensus 560 ~~v~~~~~v~~~i~~~~~--~~~~~~~~~hp~~~~~g~r~~~~~~--~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~-~ 634 (758)
|++. |+++.+++... .......|+ ++++|.+.+.+.+ .++|++.|+..+.++++++||.+.++.+.++ .
T Consensus 326 ~~~~---p~e~~~~~l~~~~~~~~~~~~~---~~e~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 399 (472)
T COG0008 326 MRVD---PVEVVIENLKPHLEEEGATLPL---NPEMGERVVPLTKETLIEIERLDFFFFEDKEEVRLKRLANVIVAEVLE 399 (472)
T ss_pred HHhC---CHHHHHHhhhhhhhhhcccCCC---CHHHHhhhhhhccchHHHHhHHHHHHhcchHHHHHHhhcchHHHHHHH
Confidence 9993 67666777543 122334444 7899999999999 9999999999888888999999988754333 2
Q ss_pred eCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEE-EEeeccc
Q 043341 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETA-AIGDSNM 713 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~-~~~e~~~ 713 (758)
+...+.+.. .+.+...+|||++.. .+|+++.+ .+++.++...+ ++++|.+
T Consensus 400 ~~~~~l~~~----------~~~~~~i~~wv~~~~-----------~~~~vk~~--------~~~~plr~a~tG~~~~p~l 450 (472)
T COG0008 400 KDAEGLITS----------DWTKENIIHWVKAVA-----------RLFGVKGP--------KLFPPLRVALTGGYVEPEL 450 (472)
T ss_pred HHHHhhhhc----------cccHHHHHHHHHHHH-----------HHhCCCCc--------ccchhhHHHhcCCccCCCH
Confidence 222222111 122234799998532 44555544 47777888877 9999998
Q ss_pred cCCCCC--CeEEEEEeeEEEee
Q 043341 714 RNLKRG--EILQLERKGYFRCD 733 (758)
Q Consensus 714 ~~~~~g--~~~QfeR~Gyf~~D 733 (758)
...... ..+||+|.|||++|
T Consensus 451 ~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 451 ADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HHHHHhhchHHHHHHHHHHhhC
Confidence 655444 45999999999875
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=559.96 Aligned_cols=238 Identities=56% Similarity=0.956 Sum_probs=228.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDL 328 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~ 328 (758)
+|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|++||+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEE
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVY 408 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl 408 (758)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999995
Q ss_pred EEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccch
Q 043341 409 YRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKR 488 (758)
Q Consensus 409 ~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR 488 (758)
|++.++.|+++|||||||||||++|||||||||+||+.+|++|.|++++||++.|.+|+|+||+..|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1122234455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCc
Q 043341 489 KLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558 (758)
Q Consensus 489 ~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r 558 (758)
++..+|++|.+.||||||++|+.+++++|+.|+||++|+...|.+++++.|||++|+++||++||+.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=584.60 Aligned_cols=273 Identities=24% Similarity=0.375 Sum_probs=243.6
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~ 330 (758)
.|||||||||||||||||+||+||++||++||+|||||||||++|+.++++++|+++|+||||+||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC-----
Q 043341 331 MAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ----- 397 (758)
Q Consensus 331 ~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~----- 397 (758)
++++|+++|+||.|+|+++++++.|. ..|+|.||+++.++.+ ..+.++++|+|++..
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~----------~~g~~~~iR~k~p~~~~~f~ 150 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL----------NCNKPFVVRLKKPNHTMSFT 150 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH----------hcCCCeEEEEEcCCCceeee
Confidence 99999999999999999999876542 3589999999988741 235689999999641
Q ss_pred --------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCc
Q 043341 398 --------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK 469 (758)
Q Consensus 398 --------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~ 469 (758)
..+..+.||||+|+| |+||||||||||||+|||||||||+||+++|++|.+|++||||+.
T Consensus 151 D~v~G~i~~~~~~~~D~Vi~R~D------------g~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~ 218 (433)
T PRK12410 151 DAIKGEVSFEPDEIDSFVILRAD------------KTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNK 218 (433)
T ss_pred eccceeEEeccccCCCeEEEcCC------------CCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCC
Confidence 234567888888887 569999999999999999999999999999999999999999986
Q ss_pred -ceEeeee-eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcc---------------
Q 043341 470 -VHIYEFS-RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGA--------------- 532 (758)
Q Consensus 470 -p~~~~~~-~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~--------------- 532 (758)
|.+.|+. .++..|+|||||++ ..+|+++|++|+.|+||++|+...|.
T Consensus 219 pp~f~Hlpli~~~~g~KLSKR~~----------------~~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~~ 282 (433)
T PRK12410 219 EITYAHLPIILNEEGKKMSKRDN----------------ASSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIEW 282 (433)
T ss_pred CCeEEEeeeeeCCCCCeeecccC----------------hhhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHHh
Confidence 5555553 45667899999995 25789999999999999999988884
Q ss_pred ------ccccccccHHHHHHHHHhhccccCCcchh
Q 043341 533 ------SKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 533 ------~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+++++.||++||+++|++||+..++..++
T Consensus 283 F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~~l~ 317 (433)
T PRK12410 283 FDIEKISKSPAKFDLKKLRFINREHLKMLDDERLS 317 (433)
T ss_pred CCHhhCCCccccCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78999999999999999999988887665
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=533.29 Aligned_cols=238 Identities=41% Similarity=0.695 Sum_probs=227.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCccc--chHHHHHHHHHHHHHhCCCCCCcccccCCHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAK--ESNEFVDNLLKDIETLGIKYETVTYTSDYFP 326 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r--~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~ 326 (758)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|++||+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999994
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccccc
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLS 486 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klS 486 (758)
|+++|+.|.++|||||||+|||++|||||||||+||..+|++|.|++++||++.|.++|+.+++..|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 11122334446999999999999999999999999999999999999999999999999999988899999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCc
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r 558 (758)
||++..+|++|.+.|||||+++|+++++++|++|++|++|+...|.+.++..+++++|+++||++|++.|+|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-69 Score=578.08 Aligned_cols=297 Identities=34% Similarity=0.460 Sum_probs=250.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~ 327 (758)
+|||||||||||+|||||||+||+||++||++||+|+|||||||+.|+.++|+++|+++|+||||+|| .+++||+|+++
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcC--CCCCcCCCCCHHHHHHHH-HHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMD--GIESKCRNNSIEENMKLW-KEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~--~~~~~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
|++++++|+++|+||+|+|+++++++.+.. +.++.++....+..+.++ ++|.++...+.++++|+|+++... ..++
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999988754 555667777777777777 778888888999999999998755 6788
Q ss_pred CcEEEEeCCCC---CcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeee-eeeec
Q 043341 405 DPVYYRCNPIP---HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF-SRLNM 480 (758)
Q Consensus 405 D~vl~R~~~~~---~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~-~~l~~ 480 (758)
|.|.++..... |...+.+++|+||||||||||||+|||||||||.||+.+|++|.+|+++|||+.|.+.|. ..++.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 88888876544 566666778999999999999999999999999999999999999999999998866665 57888
Q ss_pred ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc---------cccccccHHHHHH
Q 043341 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS---------KNLNLMEWDKLWT 546 (758)
Q Consensus 481 ~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~---------~~~~~~d~~~l~~ 546 (758)
.|+|||||++...|+.+.+.+|++|+.+++++|+++|+++++.++++...++. +++..||.++|.|
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHhCC
Confidence 89999999999998888888999999999999999999998888887665544 4455666666654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-67 Score=579.68 Aligned_cols=288 Identities=26% Similarity=0.362 Sum_probs=240.5
Q ss_pred cccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-------
Q 043341 245 AEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET------- 317 (758)
Q Consensus 245 ~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~------- 317 (758)
...++|||||||||||+|||||||+||+||++||++||+|||||||||++|++++++++|+++|+||||+||+
T Consensus 41 ~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~ 120 (535)
T PLN02627 41 SKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGE 120 (535)
T ss_pred CCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCce
Q 043341 318 --VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLE 387 (758)
Q Consensus 318 --~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~ 387 (758)
+|+||+|+++|++++++|+++|+||+|+|+++++++.|. ..|++.||+++.+++.+.+. .+.+
T Consensus 121 ~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~-------~g~~ 193 (535)
T PLN02627 121 YGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA-------KGTP 193 (535)
T ss_pred CCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh-------CCCC
Confidence 489999999999999999999999999999998876542 35899999999998754332 2456
Q ss_pred eeEEeeecC--------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCC
Q 043341 388 CCLRGKLDM--------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD 453 (758)
Q Consensus 388 ~~~R~k~~~--------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~ 453 (758)
+++|+|++. ...+..++||||+|+| |+||||||||||||+|||||||||+||++
T Consensus 194 ~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D------------G~PtY~fA~vVDD~~mgITHViRG~D~l~ 261 (535)
T PLN02627 194 YTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN------------GQPVYNFCVAVDDATMGITHVIRAEEHLP 261 (535)
T ss_pred ceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC------------CCccccccceecccccCCcEEEechhhhc
Confidence 789998753 1235578999999998 46999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCcceEeeeee-eecccccccchh----hhhhhhcCccC----------CCCCC---CcchHHHHHH
Q 043341 454 RNAQYYRIQEDLGVRKVHIYEFSR-LNMVYTLLSKRK----LLWFVQNGKVD----------GWDDP---RFPTVQGIVR 515 (758)
Q Consensus 454 ~~~~~~~l~~alg~~~p~~~~~~~-l~~~~~klSKR~----~~~li~~g~~~----------gwddp---r~~tl~~l~~ 515 (758)
||++|.+|++||||+.|.++|+.. ++-.|+|||||+ +..|.+.|+.+ ||..+ .+
T Consensus 262 nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~-------- 333 (535)
T PLN02627 262 NTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEI-------- 333 (535)
T ss_pred ChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCc--------
Confidence 999999999999999995554433 234478999998 45666666655 66422 12
Q ss_pred cCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 516 RGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 516 ~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++.+++.+.|....++++++.||.+||.|+|++||.......++
T Consensus 334 --~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~ 377 (535)
T PLN02627 334 --FTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELV 377 (535)
T ss_pred --CCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHH
Confidence 45555555555555778999999999999999999977655443
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=566.28 Aligned_cols=275 Identities=28% Similarity=0.381 Sum_probs=234.4
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDL 328 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~ 328 (758)
+|||||||||||+|||||||+||+||++||++||+|||||||||++|+.+++++.|+++|+||||+||++++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC----
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM---- 396 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~---- 396 (758)
++++++|+++|+||.|+|+++++++.|. ..|++.||+++.++..+.. ..+.++++|+|++.
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~~ 154 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALE-------AEGRKPHWRFKLDDEPIS 154 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHH-------hcCCCceEEEecCCCceE
Confidence 9999999999999999999999866542 3589999999988754321 23457788988732
Q ss_pred ---------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCC
Q 043341 397 ---------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV 467 (758)
Q Consensus 397 ---------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~ 467 (758)
..++..++|+||+|+||. ||||||||||||+|||||||||+||+++|++|.+|++||||
T Consensus 155 ~~D~i~G~~~~~~~~~~D~Vi~R~dg~------------PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~ 222 (445)
T PRK12558 155 WDDLIRGEQSIDAASLSDPVLIRADGS------------YLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGA 222 (445)
T ss_pred EEEEeeeEeecccccCCCeEEEecCCC------------ccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCC
Confidence 124567899999999854 99999999999999999999999999999999999999999
Q ss_pred CcceEeeeeeeec----ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhc------------
Q 043341 468 RKVHIYEFSRLNM----VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQG------------ 531 (758)
Q Consensus 468 ~~p~~~~~~~l~~----~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g------------ 531 (758)
+.| .|+|+|+ .|+|||||++ .+++.++|++||.|+||++|+...|
T Consensus 223 ~~P---~f~H~pli~~~~g~KLSKR~g----------------~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~ 283 (445)
T PRK12558 223 KPP---VFAHLSLLTGADGKGLSKRLG----------------GLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSME 283 (445)
T ss_pred CCC---eEEEcccccCCCcccccccCC----------------CcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHH
Confidence 999 5555554 4679999983 1355555555555555555555444
Q ss_pred ----------cccccccccHHHHHHHHHhhccccCCcchh
Q 043341 532 ----------ASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 532 ----------~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++++++.||.+||.|+|++||...+...++
T Consensus 284 eli~~F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~~~~l~ 323 (445)
T PRK12558 284 ELAESFDLSSFSRAPAKFDPEDLERLNARLLHALPFEAVK 323 (445)
T ss_pred HHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCCHHHHH
Confidence 457899999999999999999977665544
|
|
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=533.05 Aligned_cols=276 Identities=26% Similarity=0.423 Sum_probs=243.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
.|||||||||||+||||.+|||++||+|||++||+|||||||||.+|.+.+..++|.++|+|+||.||+ +|
T Consensus 33 ~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY 112 (524)
T KOG1149|consen 33 CVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPY 112 (524)
T ss_pred eeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCch
Confidence 399999999999999999999999999999999999999999999999999999999999999999994 36
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHh--------cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER--------MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~--------~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
.||+|.++|.++|++|++.|+||+|+|+.+.+...+ .+.|+++|++.+.++.-+ + ...+.++++|
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~---lakg~pf~iR 185 (524)
T KOG1149|consen 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K---LAKGTPFTIR 185 (524)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H---HhcCCCeeEE
Confidence 799999999999999999999999999998765443 246999999999887532 2 2456799999
Q ss_pred eeecCCCC------------C--CCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHH
Q 043341 392 GKLDMQDP------------N--KSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQ 457 (758)
Q Consensus 392 ~k~~~~~~------------~--~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~ 457 (758)
||++...+ + .+..|||+.|+| |+||||||||||||+|||||||||.||..+|.+
T Consensus 186 Frl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSD------------gfPTYHfAnVVDDh~M~IsHViRGeEWlpST~K 253 (524)
T KOG1149|consen 186 FRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSD------------GFPTYHFANVVDDHLMGISHVIRGEEWLPSTLK 253 (524)
T ss_pred EecCCCCCChhhhhhhhhhccccccCCCcEEEecC------------CCcceeeeeeecchhcchhheeecchhccccHH
Confidence 99975321 1 225677777776 679999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEeeeeeeecc----cccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCC
Q 043341 458 YYRIQEDLGVRKVHIYEFSRLNMV----YTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLL 519 (758)
Q Consensus 458 ~~~l~~alg~~~p~~~~~~~l~~~----~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~ 519 (758)
|..+|+||||.+| +|+||++. +.|||||+ +..|.++|++| ||.+++.- .+++
T Consensus 254 H~lLYkAfgW~pP---kFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-------~f~s 323 (524)
T KOG1149|consen 254 HILLYKAFGWQPP---KFAHLPLLLNPDGSKLSKRQGDASVSHYREQGYLPEALLNYIALLGWGFRTEN-------EFFS 323 (524)
T ss_pred HHHHHHHhCCCCC---ceeeeeeeecCCcchhhhhcCcchHHHHHHcCCChHHHHHHHHHcCCCccccc-------cccc
Confidence 9999999999999 68887764 78999999 56677889987 99887652 5689
Q ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 520 VEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 520 ~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
.+++.+-|...+++++++.+|.++|+.+||.+|+
T Consensus 324 l~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lq 357 (524)
T KOG1149|consen 324 LEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQ 357 (524)
T ss_pred HHHHHHHhchhhhcccccccCHHHHHHHHHHHHh
Confidence 9999988888889999999999999999999996
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=556.75 Aligned_cols=283 Identities=24% Similarity=0.359 Sum_probs=238.3
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHH
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFP 326 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~ 326 (758)
.+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++++++|+++|+|||++|| .+|+||+|++
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~ 82 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNN 82 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999 6899999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC-
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ- 397 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~- 397 (758)
+|++++++|+++|+||+|+|+++++++.|. ..|++.||+.+.++. ..+.++++|||++..
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~~ 151 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPREG 151 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCCC
Confidence 999999999999999999999999877652 358999999876531 124578999999753
Q ss_pred -------------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHH
Q 043341 398 -------------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQED 464 (758)
Q Consensus 398 -------------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~a 464 (758)
.++..++|+|+.|+||. ||||||++||||+|||||||||.||+.|+++|.+++++
T Consensus 152 ~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~------------ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~a 219 (513)
T PRK14895 152 SITIHDTLQGEVVIENSHIDDMVLLRADGT------------ATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQA 219 (513)
T ss_pred ceEEEeecccceecccccCCCcEEEEeCCC------------cchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHH
Confidence 35667899999999965 99999999999999999999999999999999999999
Q ss_pred hCCCcceEeeeeeee-cccccccchhh----hhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHHHHHHHHH
Q 043341 465 LGVRKVHIYEFSRLN-MVYTLLSKRKL----LWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 465 lg~~~p~~~~~~~l~-~~~~klSKR~~----~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
|||+.|.+.|+..+. ..|.|||||++ ..|.+.|+.| ||.... + .=++.+++.+.|..
T Consensus 220 LG~~~p~~~H~plv~~~~g~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~~----~----e~~~~~el~~~F~~ 291 (513)
T PRK14895 220 FGYAVPSMTHIPLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGD----D----EIISMTQAIDWFNL 291 (513)
T ss_pred cCCCCCeEEEEEeEEcCCCCccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCCC----c----CCCCHHHHHhhCCH
Confidence 999999777776554 77899999994 4444445544 443110 0 00344444444444
Q ss_pred hccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 530 QGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 530 ~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
..++++++.||++||.|+|++||.......++
T Consensus 292 ~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~ 323 (513)
T PRK14895 292 DSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLT 323 (513)
T ss_pred HhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45668899999999999999999987765544
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=561.99 Aligned_cols=279 Identities=30% Similarity=0.415 Sum_probs=236.1
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCc--------
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETV-------- 318 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~-------- 318 (758)
+++|||||||||||+|||||+|+||+||++||++||+|||||||||++|++++++++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeE
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (758)
|+||+|+++|++++++|+++|+||+|+|+++++++.|. ..|++.||+++.++..+. +. .|.++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~---~~----~g~~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAAR---LA----AGEPPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH---Hh----CCCCeeE
Confidence 89999999999999999999999999999999876542 358999999998875432 32 3558899
Q ss_pred EeeecCC--------------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchH
Q 043341 391 RGKLDMQ--------------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456 (758)
Q Consensus 391 R~k~~~~--------------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~ 456 (758)
|||++.. ..+..++|+||+|+|| +||||||++||||+|+|||||||+||+.+++
T Consensus 155 R~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~ 222 (476)
T PRK01406 155 RFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDG------------TPTYNFAVVVDDHLMGITHVIRGEDHLSNTP 222 (476)
T ss_pred EEEcCCCCceEEEEeccceEEeccccCCCcEEEecCC------------CccccchHHHHHHHcCCCEEEECchhhcCHH
Confidence 9998643 2456679999999985 5999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHH-------
Q 043341 457 QYYRIQEDLGVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFIL------- 528 (758)
Q Consensus 457 ~~~~l~~alg~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~------- 528 (758)
+|.+++++|||+.|.+.|+.. ++..|.|||||++. .+|.+++++||.|+|+.+|+.
T Consensus 223 ~q~~l~~alG~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~ 286 (476)
T PRK01406 223 KQILLYEALGWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHG 286 (476)
T ss_pred HHHHHHHHhCCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999996555543 46678999999931 244445555554444444443
Q ss_pred ---------------HhccccccccccHHHHHHHHHhhccccCCcch
Q 043341 529 ---------------EQGASKNLNLMEWDKLWTINKKIIDPVCPRHT 560 (758)
Q Consensus 529 ---------------~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~ 560 (758)
...+++++..||+++|.++|++||...+...+
T Consensus 287 ~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~~~~l 333 (476)
T PRK01406 287 DQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNGHYIRELDPEEL 333 (476)
T ss_pred ccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHHHHHHhCCHHHH
Confidence 33466889999999999999999997665443
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=560.19 Aligned_cols=287 Identities=29% Similarity=0.444 Sum_probs=244.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~ 327 (758)
+|||||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|+++|+||||+|| .+++||+|+++
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCC-
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD- 398 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~- 398 (758)
|++++++|+++|+||+|+|+++++++.|. .+|+++||+++.+++.+.+ ..+.++++|+|++...
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~ 153 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL-------AKGIPPVVRFKIPQEAV 153 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH-------hcCCCceEEEEcCCCCc
Confidence 99999999999999999999999876541 3589999999988865432 2356899999997532
Q ss_pred -------------CCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh
Q 043341 399 -------------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465 (758)
Q Consensus 399 -------------~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al 465 (758)
++..++|+|++|+|| +||||||++||||+|||||||||.||+.++++|.+++++|
T Consensus 154 ~~~~D~~~G~~~~~~~~~~D~Vl~RsdG------------~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aL 221 (470)
T TIGR00464 154 VSFNDQVRGEITFQNSELDDFVILRSDG------------SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQAL 221 (470)
T ss_pred eeEEecccceEEecCccCCCeEEEecCC------------CcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHc
Confidence 456788999999985 4999999999999999999999999999999999999999
Q ss_pred CCCcceEeeeee-eecccccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 466 GVRKVHIYEFSR-LNMVYTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 466 g~~~p~~~~~~~-l~~~~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
|++.|.+.|+.. ++..|+|||||+ +..|+++|+++ ||++|.. +..++.+++..+|...
T Consensus 222 g~~~p~~~H~p~l~~~~g~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-------~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 222 GWKIPVFAHLPMILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDD-------QEFFSLEELIEIFSLN 294 (470)
T ss_pred CCCCCeEEEEeeeecCCCccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-------cccCCHHHHHHhcCcc
Confidence 999997666643 566789999999 56666666554 6654431 1114444444444444
Q ss_pred ccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 531 GASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 531 g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
.+++++..||+++|.++|++||+..+...++
T Consensus 295 ~~~~~~~~fd~~kL~~~N~~~l~~l~~~~l~ 325 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWLNAHYIKELPDEELF 325 (470)
T ss_pred cCCCCCCeecHHHHHHHHHHHHHhCCHHHHH
Confidence 5788999999999999999999988766554
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=521.48 Aligned_cols=241 Identities=25% Similarity=0.311 Sum_probs=209.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~~ 328 (758)
++|||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999995 67999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHh-c--CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCC-------
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKER-M--DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD------- 398 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~-~--~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~------- 398 (758)
++++++|+++|+||+|+|+++++++.+ . ..|++.||+ +. ....+.++++|+|++...
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~------------~~~~~~~~~~Rlk~~~~~~~~~D~~ 147 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL------------LGRPARPAAWRLRVPDGVIAFDDRL 147 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc------------ccccCCCceEEEecCCCCceEEEee
Confidence 999999999999999999999998774 2 358899998 32 012356789999987421
Q ss_pred -------CCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcce
Q 043341 399 -------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVH 471 (758)
Q Consensus 399 -------~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~ 471 (758)
.+..+.|||++|+| |+|||||||+||||+|||||||||+||+.+|++|.+|+++|||+.|.
T Consensus 148 ~g~~~~~~~~~~~D~vi~R~D------------g~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~ 215 (272)
T TIGR03838 148 QGPQQQDLAAAVGDFVLRRAD------------GLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPR 215 (272)
T ss_pred eeEEEecCcccCCCEEEEecC------------CCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCe
Confidence 13455677777766 57999999999999999999999999999999999999999999997
Q ss_pred Eeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 472 IYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 472 ~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
+.|+.. ++..|+|||||++...|+++ +|+.+++++|.++|+++.
T Consensus 216 y~H~pll~~~~g~kLSKR~~~~~i~~~------~~~~~~~~~l~~lG~~~~ 260 (272)
T TIGR03838 216 YLHLPLVVNADGEKLSKQNGAPALDLS------HPLPALLAALRFLGLPPP 260 (272)
T ss_pred EEechhhhCCCCCeeeccCCccchhcC------CcHHHHHHHHHHcCCCCC
Confidence 666654 47789999999988888774 577778888888887653
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=517.27 Aligned_cols=242 Identities=26% Similarity=0.291 Sum_probs=215.0
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCH
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYF 325 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~ 325 (758)
+.+|||||||||||+|||||+|+||+||++||++||+|+|||||||+.|+.++|++.|++||+||||+|| .+++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHh------cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec----
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKER------MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD---- 395 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~------~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~---- 395 (758)
+.|++++++|+++|+||+|+|+++++++.+ ...|+|+||+++.+++ .++++|+|++
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcCCCce
Confidence 999999999999999999999999997765 1358999999886642 2679999987
Q ss_pred ----------CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh
Q 043341 396 ----------MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465 (758)
Q Consensus 396 ----------~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al 465 (758)
..+.+..++||||+|++ |+||||||||||||+|||||||||+||+.+|++|.+|+++|
T Consensus 149 ~~~D~~~G~~~~~~~~~~~D~Vi~R~d------------g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 216 (299)
T PRK05710 149 AFDDRLQGRQHQDLALAVGDFVLRRAD------------GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLL 216 (299)
T ss_pred EEEEecceeEeeCCCCCCCCEEEEecC------------CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHc
Confidence 12345578999999998 56999999999999999999999999999999999999999
Q ss_pred CCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc
Q 043341 466 GVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534 (758)
Q Consensus 466 g~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~ 534 (758)
||+.|.|.|+.. ++..|+|||||++... |+. .|+.|+ +.+++...|.+.
T Consensus 217 g~~~P~y~H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~~l~~lG~~~ 266 (299)
T PRK05710 217 GLPTPRYLHLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAAALRFLGQPP 266 (299)
T ss_pred CCCCCeEEEeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHHHHHHcCCCC
Confidence 999997777754 4678999999996433 333 678998 889998888764
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=468.50 Aligned_cols=205 Identities=40% Similarity=0.650 Sum_probs=194.1
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~ 327 (758)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++++++|++||+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcE
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~v 407 (758)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecc-ccccc
Q 043341 408 YYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMV-YTLLS 486 (758)
Q Consensus 408 l~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~-~~klS 486 (758)
|+|||||||||||++|||||||||+||..+|++|.+++++||++.|.+.|+.+|... |+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 469999999999999999999999999999999999999999999988888877654 58999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc-----------------------ccccccHHH
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK-----------------------NLNLMEWDK 543 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~-----------------------~~~~~d~~~ 543 (758)
||++. +||+++|++|++|++|++|+...|.+. +++.||+++
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~k 219 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAK 219 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHH
Confidence 99953 589999999999999999999999765 788999999
Q ss_pred HHHHHHhhccc
Q 043341 544 LWTINKKIIDP 554 (758)
Q Consensus 544 l~~~n~~~l~~ 554 (758)
|+++|+++|+.
T Consensus 220 L~~~N~~~l~~ 230 (230)
T cd00418 220 LEWLNREYIRE 230 (230)
T ss_pred HHHHHHHHhcC
Confidence 99999999973
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=438.78 Aligned_cols=205 Identities=31% Similarity=0.464 Sum_probs=186.9
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|.+||+||||+||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCC
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~ 399 (758)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999877
Q ss_pred CCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-
Q 043341 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL- 478 (758)
Q Consensus 400 ~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l- 478 (758)
+|+|||+||++|||++|||||||||+||+.++++|.+++++||++.|.++|+..+
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2679999999999999999999999999999999999999999999988777664
Q ss_pred ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc-----------------------cc
Q 043341 479 NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS-----------------------KN 535 (758)
Q Consensus 479 ~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~-----------------------~~ 535 (758)
+..|.|||||+++ +||+++|++|++|++|+.|+...|.+ ++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~~ 220 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSKS 220 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCcC
Confidence 7789999999953 47788888888888888777665553 56
Q ss_pred cccccHHHHHHHHHhhcc
Q 043341 536 LNLMEWDKLWTINKKIID 553 (758)
Q Consensus 536 ~~~~d~~~l~~~n~~~l~ 553 (758)
+..||++||+++|+++|.
T Consensus 221 ~~~~d~~kL~~~n~~~l~ 238 (239)
T cd00808 221 PAIFDPEKLDWLNGQYIR 238 (239)
T ss_pred cCcCCHHHHHHHHHHHhh
Confidence 778888999999998885
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=350.99 Aligned_cols=170 Identities=32% Similarity=0.572 Sum_probs=139.6
Q ss_pred CCcchhhhccCceEEEecCCCCC-ceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeee
Q 043341 556 CPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEIS 634 (758)
Q Consensus 556 ~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~ 634 (758)
|||+|||+ +||+|+|+|.|+. .+.+.+|+||+++++|+|.+.|++.||||++||.+|++|++||||+|||++|++++
T Consensus 1 A~R~maV~--dPv~v~I~n~~~~~~~~~~~p~hPk~~~~G~r~v~~~~~i~Ie~~D~~~l~~g~~v~L~~~~ni~i~~~~ 78 (174)
T PF03950_consen 1 APRYMAVL--DPVKVKITNFPEDEPEEIEVPLHPKNPELGTREVPFSKTIYIERSDFFRLAPGKEVRLMYWGNIKITSIE 78 (174)
T ss_dssp SEEE-EEC--SEEEEEECT--SSSEEEEEEESSTT-GGG-EEEEEECSEEEEEGGG--SEETTCEEEETTTEEEEEEEEE
T ss_pred CCcEEEEC--CCEEEEEEcCCCCCEEEEEecCCCCCccCceEEEEECceEEEEhhHhhhccCCCEEEEeccceEEEEEee
Confidence 79999999 6999999999853 46789999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEEEEecCC--CccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeee-EEEEeec
Q 043341 635 RDQDGNVTQLSGFLHLEG--SVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFE-TAAIGDS 711 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~--~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~-~~~~~e~ 711 (758)
+|++|.|+++.|++++++ ..+|+|++|||||+ .++++|++|+||+||++++ ++ +++ +||+|+.+ ..|++|+
T Consensus 79 ~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~-~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp~s~~~~~~~~~E~ 152 (174)
T PF03950_consen 79 KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA-KDSVPVEVRLYDHLFTVDN-DE--DDL--INPNSLKVVKNGLVEP 152 (174)
T ss_dssp E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG-CC-EEEEEEEE--SBSSS--GG--TGG--B-TTSEEEEEEEEE-G
T ss_pred ecCCCCEEEEEEEEecccccCCcccCcEEEEccC-CCCeeeEEEEehhhcCCCc-cc--cce--ECCCCcEEccCEEEch
Confidence 999999999999999864 23677789999997 4689999999999999988 65 444 99999999 5999999
Q ss_pred cccCCCCCCeEEEEEeeEEEee
Q 043341 712 NMRNLKRGEILQLERKGYFRCD 733 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D 733 (758)
++.++++||+|||||+|||+||
T Consensus 153 ~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 153 ALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp GGGGS-TT-EEEETTTEEEEEE
T ss_pred hHHhCCCCCEEeEEEeeEEEeC
Confidence 9999999999999999999998
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A .... |
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=296.91 Aligned_cols=261 Identities=18% Similarity=0.264 Sum_probs=192.7
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCC-C
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIK-Y 315 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~-~ 315 (758)
-|+++.+.||||||++++-+++.| .|...||.+|+|+|++.. .+.|++++.+|++.||+. +
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 499999999999999987666665 444789999999997633 336899999999999996 5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 316 ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 316 d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+..+++|++++.|.+++++||++|+||+.....-.++..+.+.|....+..+.++ +..|. +++
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~-------l~~ga----------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEE-------LQAGA----------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhH-------Hhhcc----------ccc
Confidence 7899999999999999999999999998643222222222233333332223332 33331 222
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee-CCCCC-CchHHHHHHHHHh-C-CC
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR-SSEYH-DRNAQYYRIQEDL-G-VR 468 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir-g~d~~-~~~~~~~~l~~al-g-~~ 468 (758)
....+.+..||||||.....+|.|.+|| .|+|+||++|++. +++..--.+.. |.|++ .|....++..+|. | -+
T Consensus 172 ~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~ 251 (464)
T COG0215 172 VDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKP 251 (464)
T ss_pred cccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCc
Confidence 2234567789999999999999999999 9999999999853 11111111111 33433 3444444444554 5 34
Q ss_pred cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 469 KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 469 ~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
..+||.| ++|+++|+|||||.++ +.|++++++. +.|+++|.|+++. ++|++.+|+.+.|...
T Consensus 252 ~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~-HYR~pl~fsee~L~~A 314 (464)
T COG0215 252 FAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSS-HYRSPLDFSEELLEEA 314 (464)
T ss_pred ceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHH-HhCCccccCHHHHHHH
Confidence 4799999 8999999999999974 5699999999 9999999999986 9999999999999887
Q ss_pred HH
Q 043341 548 NK 549 (758)
Q Consensus 548 n~ 549 (758)
.+
T Consensus 315 ~~ 316 (464)
T COG0215 315 KK 316 (464)
T ss_pred HH
Confidence 54
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=271.86 Aligned_cols=259 Identities=15% Similarity=0.262 Sum_probs=172.8
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~d 316 (758)
-|+++.+.||||+|++++-+++.| +|...++.+|+|+|.+.. ...|++.+.+||+.|||.++
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 399999999999999987666555 788899999999997533 33689999999999999985
Q ss_pred -CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 317 -TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 317 -~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
..+++|++++.+.+++++|+++|+||......-.++-.+.+.|....+ ...++ |..|.. .+
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~-~~~~~-------l~~~~~----------~~ 156 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSN-QDLED-------LEAGAR----------VE 156 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT--SHHH-------HHHCHH----------HT
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccc-cchhh-------HHhhhh----------cc
Confidence 788999999999999999999999997652222222223334443333 34433 333311 12
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccC-ccEEeeCCCCC-CchHHHHHHHHHh-CCCc
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEG-ITHALRSSEYH-DRNAQYYRIQEDL-GVRK 469 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~g-ithvirg~d~~-~~~~~~~~l~~al-g~~~ 469 (758)
....+.+..||+|||.....++.|.++| .|+|+||++|++. +++.. ++----|.|++ .|....++..+|+ |-+.
T Consensus 157 ~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~ 236 (300)
T PF01406_consen 157 VDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPF 236 (300)
T ss_dssp T-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-S
T ss_pred cccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchH
Confidence 2234567799999999887789999999 9999999999853 22221 22112366665 6666777666666 6667
Q ss_pred ceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 470 VHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 470 p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
..+|.| +||++.|+|||||.++ +.||++++++ ++|+++|.||++. +++++.+|+++.|....
T Consensus 237 a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~-hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 237 ANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLST-HYRKPLNFSEENLEEAK 299 (300)
T ss_dssp EEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS--TTS-EEE-HHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcC-CCCCccccCHHHHHHhc
Confidence 899999 8999999999999975 4599999987 9999999999985 99999999999998753
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=272.75 Aligned_cols=254 Identities=15% Similarity=0.176 Sum_probs=190.2
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~d 316 (758)
-|+|+|++||||+|+.+..+.++| +|...|+.+|+|+|.+.. ...|.+.+.+|++.|||..+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 699999999999999988887777 678899999999996533 33688999999999999855
Q ss_pred -CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 317 -TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 317 -~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
..++.|+|++.+.+++++|+++|+||....+ -.+.-.+.+.|... .+++.++ |..|. | ++
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~-VYFdv~~f~~YG~L-s~~~l~~-------l~~g~--------r--v~ 227 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGD-VYFSVDKFPEYGKL-SGRKLED-------NRAGE--------R--VA 227 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCe-EEEecCcchhhhhc-CCCChhH-------hhcCC--------C--CC
Confidence 6788999999999999999999999953311 01111111223222 2233332 43331 1 23
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc----------cccccCccEEeeCCCCCCchHHHHHHHHH
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRSSEYHDRNAQYYRIQED 464 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg~d~~~~~~~~~~l~~a 464 (758)
....+.+..||+|||.....++.|.++| +|+|+||++|++ |=|-.|++++ -.|+.|...|.. .+
T Consensus 228 ~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~---FPHHENEiAQse--a~ 302 (557)
T PLN02946 228 VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV---FPHHENEIAQSC--AA 302 (557)
T ss_pred cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccC---CCcccchHHHHH--HH
Confidence 3334667899999998877779999999 999999999994 4444444444 245555555542 22
Q ss_pred hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHH
Q 043341 465 LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDK 543 (758)
Q Consensus 465 lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~ 543 (758)
.|.....+|.| ++|++.|+|||||+++ +.|++++++. |+++++|.|+++. +++++.+|+++.
T Consensus 303 ~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~-hyr~~l~fs~e~ 365 (557)
T PLN02946 303 CCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGT-HYRSPINYSDVQ 365 (557)
T ss_pred hCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeecc-CCCCCcEecHHH
Confidence 56666678887 8999999999999974 5599999987 9999999999984 899999999999
Q ss_pred HHHHHH
Q 043341 544 LWTINK 549 (758)
Q Consensus 544 l~~~n~ 549 (758)
|....+
T Consensus 366 L~~a~~ 371 (557)
T PLN02946 366 LESASE 371 (557)
T ss_pred HHHHHH
Confidence 877743
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=267.10 Aligned_cols=267 Identities=19% Similarity=0.289 Sum_probs=199.2
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCC
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGI 313 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi 313 (758)
.=..|+|+|++||||+|+++..+.++| +|+..|+.+++|+|++.. .+.|.+.+.+++++|||
T Consensus 25 yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI 104 (465)
T TIGR00435 25 YVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNV 104 (465)
T ss_pred EEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445699999999999999999999998 899999999999997532 34788999999999999
Q ss_pred CCCC-cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe
Q 043341 314 KYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392 (758)
Q Consensus 314 ~~d~-~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~ 392 (758)
.+|. .+++|++.+.+++++++|+++|+||.+....--+...+.+.| |.+.+..+++ |..|. |
T Consensus 105 ~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~y-G~ls~~~~~~-------~~~~~--------~- 167 (465)
T TIGR00435 105 LPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDY-GKLSKQDLDQ-------LEAGA--------R- 167 (465)
T ss_pred CCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchh-ccCCCCCHHH-------Hhccc--------c-
Confidence 9885 578999999999999999999999965411111111111222 2333334332 33331 1
Q ss_pred eecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc-ccccC--ccEEeeCCCCC-CchHHHHHHHHH-hC
Q 043341 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV-DAKEG--ITHALRSSEYH-DRNAQYYRIQED-LG 466 (758)
Q Consensus 393 k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd-D~~~g--ithvirg~d~~-~~~~~~~~l~~a-lg 466 (758)
++....+.+..||+|||+....++.|.++| .|+|+||++|++. ....| ++.-.-|.||. .|......+-.+ .|
T Consensus 168 -~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g 246 (465)
T TIGR00435 168 -VDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG 246 (465)
T ss_pred -cCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcC
Confidence 122233567799999999877789999999 8999999999853 22223 22222366765 566666665555 47
Q ss_pred CCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHH
Q 043341 467 VRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 467 ~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
.+.+.+|.| ++|.+.|+|||||+++ +.|++++++. ++++++|.|+++. +++++.+|+++.|.
T Consensus 247 ~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~-~~~~~l~fs~~~l~ 309 (465)
T TIGR00435 247 KQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSV-HYRSPLDFSEELLE 309 (465)
T ss_pred CCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhC-CCCCCCccCHHHHH
Confidence 666778777 7999999999999974 4589999988 9999999999975 89999999999998
Q ss_pred HHHHhhccc
Q 043341 546 TINKKIIDP 554 (758)
Q Consensus 546 ~~n~~~l~~ 554 (758)
...+. ++.
T Consensus 310 ~a~~~-~~r 317 (465)
T TIGR00435 310 AAKNA-LER 317 (465)
T ss_pred HHHHH-HHH
Confidence 88754 443
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=265.06 Aligned_cols=255 Identities=18% Similarity=0.274 Sum_probs=188.9
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC----------Ccccc-------------hHHHHHHHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT----------NPAKE-------------SNEFVDNLL 305 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt----------d~~r~-------------~~~~~~~i~ 305 (758)
.-|+|+.++||||+|+.+..+.++| +|...|+.+|+|+ |++.. ...|.+.+.
T Consensus 27 CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~ 106 (481)
T PRK14534 27 CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFF 106 (481)
T ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3499999999999999988777776 6778999999999 65422 346889999
Q ss_pred HHHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHh--cCc
Q 043341 306 KDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMI--AGS 382 (758)
Q Consensus 306 ~dl~~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~g~ 382 (758)
++++.|||.++ ..+.+|++++.+++++++|+++|+||....+ ..+...+..+|.... ++..++ |. .|
T Consensus 107 ~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~-vyFdv~~~~~YG~ls-~~~l~~-------l~~~~~- 176 (481)
T PRK14534 107 DDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGN-VYFDTSCFKSYGQMA-GINLND-------FKDMSV- 176 (481)
T ss_pred HHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCe-EEEecccccchhhhc-CCCHHH-------Hhhhcc-
Confidence 99999999988 4557899999999999999999999953211 111111122333222 233332 22 11
Q ss_pred cCCceeeEEeeecCCCCCCCCCCcEEEEeC---CCCCcccCCcc-cccccccccccc----------cccccCccEEeeC
Q 043341 383 ERGLECCLRGKLDMQDPNKSLRDPVYYRCN---PIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRS 448 (758)
Q Consensus 383 ~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~---~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg 448 (758)
-| ++......+..||+|||.. .+.++.|.++| .|||+||++|++ |=|..|++++
T Consensus 177 -------~~--v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dli--- 244 (481)
T PRK14534 177 -------SR--VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHI--- 244 (481)
T ss_pred -------Cc--CCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccC---
Confidence 11 2222345678999999964 34568899999 999999999984 3334444433
Q ss_pred CCCCCchHHHHHHHHH-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHH
Q 043341 449 SEYHDRNAQYYRIQED-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQF 526 (758)
Q Consensus 449 ~d~~~~~~~~~~l~~a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~ 526 (758)
-.|+.+...|. ++ .|.+.+.+|.| ++|.+.|+|||||.++ +.|+++|++.|++++++|.|
T Consensus 245 FPHHene~Aqs---~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~ 306 (481)
T PRK14534 245 GVHHINEIAIA---ECYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYF 306 (481)
T ss_pred CCcchhHHHHH---hhhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHH
Confidence 23444444444 44 47788899999 7999999999999974 55999999999999999999
Q ss_pred HHHhccccccccccHHHHHHHHH
Q 043341 527 ILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 527 ~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
+++. +++++.+|+++.|....+
T Consensus 307 lls~-~yr~~l~Fs~e~l~~a~~ 328 (481)
T PRK14534 307 CLTA-HYRTQLKFTFNNLKACKI 328 (481)
T ss_pred HHhC-CCCCCCCCCHHHHHHHHH
Confidence 8775 999999999999998753
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=263.00 Aligned_cols=260 Identities=16% Similarity=0.248 Sum_probs=191.1
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC----------Ccccc-------------hHHHHHHHHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT----------NPAKE-------------SNEFVDNLLK 306 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt----------d~~r~-------------~~~~~~~i~~ 306 (758)
-|++++++||||+|+.+..+.++| .|...|+.+|+|+ |++.. ...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999999999988777776 6778999999999 65432 3368899999
Q ss_pred HHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCC
Q 043341 307 DIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERG 385 (758)
Q Consensus 307 dl~~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~ 385 (758)
+++.|||.++ ..++.++|++.+++++++|+++|+||....+ -.+...+.+.|. ..++++.++ |..|.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~-vyFdv~~~~~YG-~Ls~~~~~~-------l~~g~--- 177 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGN-VYFDIRTFPSYG-SLASAAVED-------LQAGA--- 177 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCe-EEEeCCcccchh-hhcCCCHHH-------hhcCC---
Confidence 9999999986 6688999999999999999999999953211 001111112222 223333333 33331
Q ss_pred ceeeEEeeecCCCCCCCCCCcEEEEeCC--CC-CcccCCcc-ccccccccccccc--ccccCccEEe-eCCCCC-CchHH
Q 043341 386 LECCLRGKLDMQDPNKSLRDPVYYRCNP--IP-HHRIGSKY-KVYPTYDFACPFV--DAKEGITHAL-RSSEYH-DRNAQ 457 (758)
Q Consensus 386 ~~~~~R~k~~~~~~~~~~~D~vl~R~~~--~~-~~~~~~~~-~~~PtY~~a~~vd--D~~~githvi-rg~d~~-~~~~~ 457 (758)
| ++....+.+..||+||+... .. .+.|.++| .|+|+||++|++. .++..-..+. -|.|++ .|...
T Consensus 178 -----~--v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHen 250 (490)
T PRK14536 178 -----R--IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN 250 (490)
T ss_pred -----c--CCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhh
Confidence 1 22223456779999998753 22 47899999 9999999999852 2222211111 155554 45555
Q ss_pred HHHHHHH-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccc
Q 043341 458 YYRIQED-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535 (758)
Q Consensus 458 ~~~l~~a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~ 535 (758)
..+..++ .|.+.+.+|.| ++|.+.|+|||||+++ +.|+++|++.|++++++|.|+++ .++++
T Consensus 251 eiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls-~~yr~ 314 (490)
T PRK14536 251 EIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLG-GHYRS 314 (490)
T ss_pred HHHHHHHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHh-CCCCC
Confidence 5555555 47777899999 7999999999999974 55999999999999999999988 59999
Q ss_pred cccccHHHHHHHHH
Q 043341 536 LNLMEWDKLWTINK 549 (758)
Q Consensus 536 ~~~~d~~~l~~~n~ 549 (758)
+.+|+++.|....+
T Consensus 315 ~l~Fs~e~l~~a~~ 328 (490)
T PRK14536 315 QLAFSWEALKTAKA 328 (490)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999988766
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=258.70 Aligned_cols=265 Identities=15% Similarity=0.150 Sum_probs=193.3
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCC-C
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGI-K 314 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi-~ 314 (758)
..|+|+|++||||+|+.+..+.++| .|...|+..++|.|.+.. .+.|.+.+.++++.||| .
T Consensus 15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~ 94 (384)
T PRK12418 15 CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLP 94 (384)
T ss_pred cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4599999999999999988877777 577899999999986532 34688999999999997 6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCceeccCCc---hHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 315 YETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP---REQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 315 ~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~---~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
+|..+++|++++.+++++++|+++|+||..... .-.++-.+.+.|. ...+...++ |..|.. -|
T Consensus 95 ~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG-~ls~~~~~~-------~~~~~~------~~ 160 (384)
T PRK12418 95 PRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFG-YESGYDRAT-------MLELFA------ER 160 (384)
T ss_pred CCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcc-cccCCCHHH-------HHhhhc------cc
Confidence 788999999999999999999999999965421 1112222222332 223344443 322100 01
Q ss_pred eeecC-CCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee--CCCCC-CchHHHHHHHHH
Q 043341 392 GKLDM-QDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR--SSEYH-DRNAQYYRIQED 464 (758)
Q Consensus 392 ~k~~~-~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir--g~d~~-~~~~~~~~l~~a 464 (758)
. ++. ...+.+.+||+|||.....++.|.++| .|+|+||++|++. .++.. +-=|+ |.|++ .|....++..++
T Consensus 161 ~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~-~~DIH~GG~DL~FPHHeneiaq~~a 238 (384)
T PRK12418 161 G-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGS-GFDIQGGGSDLIFPHHEFSAAHAEA 238 (384)
T ss_pred c-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCC-CcccccCccccccchhHhHHHHHHH
Confidence 0 111 123567799999999877789999999 9999999999842 22211 11111 44544 455555555555
Q ss_pred -hCC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 465 -LGV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 465 -lg~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
.|- +.+.+|.| ++|.+.|+|||||+++ +.|++.+.+.|++++++|.|++ .++++++.+|++
T Consensus 239 ~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~ 302 (384)
T PRK12418 239 ATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTD 302 (384)
T ss_pred hcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEe-ccCCCCCcccCH
Confidence 455 56789999 7999999999999974 5589999999999999999998 469999999999
Q ss_pred HHHHHHHHh
Q 043341 542 DKLWTINKK 550 (758)
Q Consensus 542 ~~l~~~n~~ 550 (758)
+.|....+.
T Consensus 303 e~l~~a~~~ 311 (384)
T PRK12418 303 AVLAEAEAR 311 (384)
T ss_pred HHHHHHHHH
Confidence 999886553
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=262.54 Aligned_cols=266 Identities=17% Similarity=0.272 Sum_probs=196.7
Q ss_pred eeeec-cCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCCcccc-------------hHHHHHHHHHHHH
Q 043341 249 KVRLR-FAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIE 309 (758)
Q Consensus 249 ~v~~R-faP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~ 309 (758)
+|... ..|+|+|++||||+|+.++.+.++|. |+..|+..++|+|++.. ..++.+.+.++++
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555 78999999999999999999988884 88999999999987532 4478999999999
Q ss_pred HhCC-CCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCcee
Q 043341 310 TLGI-KYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388 (758)
Q Consensus 310 ~LGi-~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 388 (758)
+||| .+|..+++|++.+.+++++++|+++|+||.+..+ -.+.-.+.+.|.. -.+.+.++ |..|
T Consensus 103 ~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~-Vyfdv~~~~~yg~-ls~~~~~~-------~~~~------- 166 (463)
T PRK00260 103 ALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGD-VYFDVRKFPDYGK-LSGRNLDE-------LQAG------- 166 (463)
T ss_pred HcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCe-EEEeccccccccc-CCCCCHHH-------Hhcc-------
Confidence 9999 5677788999999999999999999999954311 1111112223332 22333333 4333
Q ss_pred eEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc-cccccCccEEee--CCCCC-CchHHHHHHHH
Q 043341 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF-VDAKEGITHALR--SSEYH-DRNAQYYRIQE 463 (758)
Q Consensus 389 ~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v-dD~~~githvir--g~d~~-~~~~~~~~l~~ 463 (758)
-| ++......+..||+|||.....++.|.++| .|+|+||+.|++ .....|.+-=|+ |.|++ .|....++.-.
T Consensus 167 -~~--~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~ 243 (463)
T PRK00260 167 -AR--VEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSE 243 (463)
T ss_pred -Cc--CCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHH
Confidence 12 233334567899999999877788999999 899999999943 333334332222 77744 44444554434
Q ss_pred H-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 464 D-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 464 a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
+ .|.+.+.+|.| +++.+.|+|||||+++ +.|++++++. ++++++|.|+++ +.++++..|++
T Consensus 244 a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~ 306 (463)
T PRK00260 244 AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSE 306 (463)
T ss_pred HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCH
Confidence 4 57556678887 7999999999999974 4589999987 999999999997 58999999999
Q ss_pred HHHHHHHHh
Q 043341 542 DKLWTINKK 550 (758)
Q Consensus 542 ~~l~~~n~~ 550 (758)
+.|....+.
T Consensus 307 ~~l~~a~~~ 315 (463)
T PRK00260 307 EALEQAKKA 315 (463)
T ss_pred HHHHHHHHH
Confidence 988777554
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=258.72 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=196.3
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCC-
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIK- 314 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~- 314 (758)
..|+|++++||||+|+.+..++++| .|...|+.+++|+|.+.. .+.|.+.+.++++.|||.
T Consensus 42 CGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~ 121 (411)
T TIGR03447 42 CGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLP 121 (411)
T ss_pred eCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3599999999999999998888887 677899999999986532 346889999999999986
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCceeccCCc---hHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 315 YETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP---REQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 315 ~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~---~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
+|..+++|++++.+.+++++|+++|+||..... .-.++-.+.+.|... .++..++ |..+. + -|
T Consensus 122 ~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~L-s~~~~~~-------~~~~~--~----~~ 187 (411)
T TIGR03447 122 PRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYE-SGYDRAT-------MLELF--A----ER 187 (411)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhccccc-cCCCHHH-------HHhhh--c----cc
Confidence 678999999999999999999999999964420 112222222333322 2344443 22210 0 00
Q ss_pred eeecCC-CCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc-ccccCccEEee--CCCCC-CchHHHHHHHHHh
Q 043341 392 GKLDMQ-DPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV-DAKEGITHALR--SSEYH-DRNAQYYRIQEDL 465 (758)
Q Consensus 392 ~k~~~~-~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd-D~~~githvir--g~d~~-~~~~~~~~l~~al 465 (758)
.++.. ..+.+.+||+|||.....++.|.++| .|+|+||++|++. ....|-+-=|+ |.|++ .|....++.-+|+
T Consensus 188 -~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~ 266 (411)
T TIGR03447 188 -GGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAA 266 (411)
T ss_pred -ccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHh
Confidence 01111 23567799999999877789999999 9999999999853 11222222233 66665 5666666655664
Q ss_pred -CC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHH
Q 043341 466 -GV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 466 -g~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
|- +.+.+|.| ++|.+.|+|||||+++ +.|++++.+.|++++++|.|+++ .+++++.+|+.+
T Consensus 267 ~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e 330 (411)
T TIGR03447 267 TGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDA 330 (411)
T ss_pred cCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHH
Confidence 65 57889999 7999999999999974 45899999999999999999985 599999999999
Q ss_pred HHHHHHH
Q 043341 543 KLWTINK 549 (758)
Q Consensus 543 ~l~~~n~ 549 (758)
.|....+
T Consensus 331 ~l~~a~~ 337 (411)
T TIGR03447 331 VLAEAEA 337 (411)
T ss_pred HHHHHHH
Confidence 9988643
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=261.90 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=189.2
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCC
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKY 315 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~ 315 (758)
.-|+|++++||||+|+++..+.++| +|...|+.+++|+|.+.. ...|.+.+.++++.|||.+
T Consensus 254 CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~ 333 (699)
T PRK14535 254 CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLR 333 (699)
T ss_pred cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3599999999999999998888777 677899999999996533 3468899999999999998
Q ss_pred C-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 316 E-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 316 d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
+ ..++.|++++.+.+++++|+++|+||......-.+.-.+.+.|.. ..+++.+ +|..|. | +
T Consensus 334 p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~-LS~~~~~-------~l~~g~--------r--v 395 (699)
T PRK14535 334 PDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQ-LSGKSLD-------DLRAGE--------R--V 395 (699)
T ss_pred CcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccccccc-ccCCChH-------HhcCCC--------c--c
Confidence 7 567889999999999999999999995321101111111222322 2223333 243331 1 2
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc----------cccccCccEEeeCCCCCCchHHHHHHHH
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRSSEYHDRNAQYYRIQE 463 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg~d~~~~~~~~~~l~~ 463 (758)
+....+.+..||+|||.....++.|.++| .|+|+||++|++ |=|..|++++ -.||.|...|. +
T Consensus 396 e~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi---FPHHENEiAQs---e 469 (699)
T PRK14535 396 EVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ---FPHHENEIAQS---V 469 (699)
T ss_pred ccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC---CCCCccHHHHH---H
Confidence 22233567799999998877788999999 999999999985 3344444444 24555555554 4
Q ss_pred H-hCC----------------CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHH
Q 043341 464 D-LGV----------------RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQ 525 (758)
Q Consensus 464 a-lg~----------------~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~ 525 (758)
| .|. +..++|.| ++|.+.|+|||||+++ +.|++++++. ++++++|.
T Consensus 470 A~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl 533 (699)
T PRK14535 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRF 533 (699)
T ss_pred HhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHH
Confidence 4 343 13578988 8999999999999974 4589999987 99999999
Q ss_pred HHHHhccccccccccHHHHHHHHH
Q 043341 526 FILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 526 ~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
|+++ ++++++.+|+.+.|....+
T Consensus 534 ~lLs-shYRspL~fS~e~Le~Ak~ 556 (699)
T PRK14535 534 FILR-AHYRSPLNYSDAHLDDAKG 556 (699)
T ss_pred HHHc-CCCCCCCCcCHHHHHHHHH
Confidence 9998 5899999999998888653
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=230.00 Aligned_cols=248 Identities=17% Similarity=0.227 Sum_probs=181.6
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc------ccCceEEEEecCCCcccchH------------------HHHHHHHHHHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ------RYQGQLIVRFDDTNPAKESN------------------EFVDNLLKDIE 309 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilRieDtd~~r~~~------------------~~~~~i~~dl~ 309 (758)
-.|+.+..-||||||+.+--+.+.| +|+..|+++|+|+|++.... .|++.+.+||.
T Consensus 61 CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~ 140 (586)
T KOG2007|consen 61 CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMA 140 (586)
T ss_pred ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 3599999999999999987666665 68899999999999864331 26799999999
Q ss_pred HhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCcee
Q 043341 310 TLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388 (758)
Q Consensus 310 ~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 388 (758)
.|++-++ ..++.|+|++.+..+++++|++|.||+.+.+. .+...+...-.+++.... +.+.+| ++
T Consensus 141 ~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsV-YFdv~kf~~~YgKL~G~~--------~~~~~g-----Eg 206 (586)
T KOG2007|consen 141 ALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSV-YFDVDKFPHSYGKLVGQR--------KNLQEG-----EG 206 (586)
T ss_pred HhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcE-EEecccccchhhhhcCch--------hhcccC-----cC
Confidence 9999876 78899999999999999999999999764221 111111110012222100 112222 22
Q ss_pred eEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc----------ccccCccEEeeCCCCCCchHH
Q 043341 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV----------DAKEGITHALRSSEYHDRNAQ 457 (758)
Q Consensus 389 ~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd----------D~~~githvirg~d~~~~~~~ 457 (758)
.+- .+......||+|||..+..+|.|.++| +|+|+||++|++. -|-.||+.. -.|+.|...
T Consensus 207 ~l~-----ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~---FPHHeNEiA 278 (586)
T KOG2007|consen 207 VLS-----DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLA---FPHHENEIA 278 (586)
T ss_pred ccc-----cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCccccc---CCCcccHHH
Confidence 221 134556789999999999999999999 9999999999863 333333333 245666555
Q ss_pred HHHHHHHhCCC-cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccc
Q 043341 458 YYRIQEDLGVR-KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535 (758)
Q Consensus 458 ~~~l~~alg~~-~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~ 535 (758)
|-.. ++.-+ -..||.| |||.+.|.||||+.. ++.||+.+++. |+|.++|.||++. ..++
T Consensus 279 Q~eA--~~~~~~wVnYflHtGhL~i~g~KMSKSLk---------------NFiTIke~Lk~-~sp~qLRl~fl~~-~wr~ 339 (586)
T KOG2007|consen 279 QSEA--AFDDSQWVNYFLHTGHLTINGEKMSKSLK---------------NFITIKEALKK-YSPRQLRLAFLLH-QWRS 339 (586)
T ss_pred HHHH--HhcCCccceeEEEcCeeeeccchhhhhhc---------------cceeHHHHHHh-cCHHHHHHHHHHH-HhcC
Confidence 5422 23222 3578888 899999999999986 45699999999 9999999999987 8899
Q ss_pred cccccHH
Q 043341 536 LNLMEWD 542 (758)
Q Consensus 536 ~~~~d~~ 542 (758)
+.+|+-.
T Consensus 340 ~ldYs~s 346 (586)
T KOG2007|consen 340 PLDYSDS 346 (586)
T ss_pred cCCchHH
Confidence 9999877
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=245.65 Aligned_cols=266 Identities=14% Similarity=0.187 Sum_probs=186.1
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc------ccCceEEEEecCCCcccc--------------hHHHHHHHHHHHHHhCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ------RYQGQLIVRFDDTNPAKE--------------SNEFVDNLLKDIETLGIK 314 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilRieDtd~~r~--------------~~~~~~~i~~dl~~LGi~ 314 (758)
-|+++++.||||||+.++.+.++| +|...|+.+|+|+|.+.. ...|++.+.+|++.|||.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 499999999999999988777766 466799999999997532 236889999999999999
Q ss_pred CC-CcccccCCHHHHHHHHHHHHHhCceeccCCch----HHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceee
Q 043341 315 YE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR----EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECC 389 (758)
Q Consensus 315 ~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~----e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (758)
++ .+++.|+|++.+.+++++|+++|+||....+. ..+... ...|.. ++++.. .....|..|.. .
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~-~~~Yg~----L~p~~~-~~~~~~~~g~~-----~ 215 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA-GHVYPK----LEPESV-ADEDRIAEGEG-----A 215 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc-hhhHHh----hChhhc-CCHHHHhcccC-----C
Confidence 76 67888999999999999999999999643211 111110 001111 111100 00111222210 0
Q ss_pred EEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee-CCCCC-CchHHHHHHHHH
Q 043341 390 LRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR-SSEYH-DRNAQYYRIQED 464 (758)
Q Consensus 390 ~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir-g~d~~-~~~~~~~~l~~a 464 (758)
+. +......+..||+||+...+.+|.|.++| .|+|+||++|++. |++..--.+.. |.|+. .|....++..+|
T Consensus 216 l~---~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA 292 (651)
T PTZ00399 216 LG---KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEA 292 (651)
T ss_pred cc---ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHH
Confidence 10 11123456689999999888889999999 9999999988753 33322111111 44442 343444444444
Q ss_pred h-CC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 465 L-GV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 465 l-g~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
+ |- +.+.+|.| +||++.|.|||||+++ +.|++++++. |+++++|.||++. ..+++.+|++
T Consensus 293 ~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~ 355 (651)
T PTZ00399 293 YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSD 355 (651)
T ss_pred hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCH
Confidence 3 54 45788999 9999999999999974 5599999998 9999999999975 9999999999
Q ss_pred HHHHHHHHhh
Q 043341 542 DKLWTINKKI 551 (758)
Q Consensus 542 ~~l~~~n~~~ 551 (758)
+.+....+..
T Consensus 356 e~l~~a~~~~ 365 (651)
T PTZ00399 356 ESMDEAIEKD 365 (651)
T ss_pred HHHHHHHHHH
Confidence 9987775543
|
|
| >PLN02473 glutathione S-transferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=205.72 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=133.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|.|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++.
T Consensus 1 ~~~kLy--~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MVVKVY--GQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED-GDLKLFESRAIARYYATK 77 (214)
T ss_pred CceEEe--cCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE-CCEEEEehHHHHHHHHHH
Confidence 568999 888899999999999999999987532 99999987 889999999999999999
Q ss_pred C-----CCCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcc
Q 043341 99 G-----NFYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFV 145 (758)
Q Consensus 99 ~-----~L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.+....+.+ ..+.+.++.||+.|++++|+
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 157 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYL 157 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7 48999999999999998765443310 34566788999999988999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+++|+||+++++.+.+...........+.+|+|.+|+++|.++ |++++++..
T Consensus 158 ~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~--p~~~~~~~~ 211 (214)
T PLN02473 158 GGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISAR--PAWKKLMEL 211 (214)
T ss_pred cCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcC--hhhHHHHHH
Confidence 999999999999999876522111112257899999999999999 999999865
|
|
| >PLN02395 glutathione S-transferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=202.02 Aligned_cols=162 Identities=18% Similarity=0.307 Sum_probs=132.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+++|| + ..+++++++++++.++|++|+.+.+ |+||+|++ +|.+|+||.||++||++.
T Consensus 1 ~~~~ly--~-~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MVLKVY--G-PAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD-GDYKIFESRAIMRYYAEK 76 (215)
T ss_pred CeEEEE--c-CCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHHHH
Confidence 678888 5 5677899999999999999987532 99999987 778999999999999998
Q ss_pred C-----CCCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcc
Q 043341 99 G-----NFYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFV 145 (758)
Q Consensus 99 ~-----~L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.|....+.+ ..+.+.++.||.+|+.++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 7 38999999999999999875433210 34566788999999988999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhhc
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVS 204 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~ 204 (758)
+|+++|+||+++++.+.++............+|+|.+|++++.++ |++++++..+..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~r--p~~k~~~~~~~~ 213 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSR--PAWKEVLAKYSL 213 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcC--hHHHHHHHHhcC
Confidence 999999999999998876522111122356799999999999999 999999988753
|
|
| >PRK09481 sspA stringent starvation protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-22 Score=202.71 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=132.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ .
T Consensus 11 ~~Ly--~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~-~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 11 MTLF--SGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVD-RELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred eEEe--CCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEE-CCEEeeCHHHHHHHHHHhCCCCC
Confidence 7999 888899999999999999999998654 99999987 8899999999999999998 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC----------h-------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS----------G-------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~----------~-------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
|+|.++.+|+++++|+.+....+. + ..+...+..||++|++++|++|+++|+||+++++.+.+
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHH
Confidence 999999999999999876543211 0 45677789999999999999999999999999999877
Q ss_pred hhcccccccc-cccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 164 TGQRWDSLRK-SKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 164 l~~~~~~~~~-~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.. .+.+. ...+|+|.+|+++|.++ |++++++..
T Consensus 168 ~~~--~~~~~~~~~~p~l~~w~~~~~~r--p~~~~~~~~ 202 (211)
T PRK09481 168 LPV--LGIELSGPGAKELKGYMTRVFER--DSFLASLTE 202 (211)
T ss_pred HHh--cCCCCCCCCChhHHHHHHHHhcc--HHHHHHcCH
Confidence 522 22222 25799999999999999 999988654
|
|
| >PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=201.11 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=128.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEe----CCC--cEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSF----SNG--SKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~----~~g--~~l~ES~aIl~y 94 (758)
|+|| +. .++++++|+++|+++|++|+.+.+ |+||+|++ +|| .+|+||.||++|
T Consensus 2 ~~Ly--~~-~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 2 IDLY--FA-PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred eEEE--EC-CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 6888 54 589999999999999999987432 99999997 356 479999999999
Q ss_pred HHHhC-CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 95 IGRVG-NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 95 L~~~~-~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
|++.+ .++|.++.+|+++++|+.|..+.+.+ ..+...+..||.+|.+++|++|++
T Consensus 79 L~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 158 (215)
T PRK13972 79 LAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGEN 158 (215)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCC
Confidence 99998 56788899999999999886543221 346678899999999899999999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+|||++++.+..... .... ...||+|.+|+++|.++ |+|++++.+
T Consensus 159 ~t~ADi~l~~~~~~~~~--~~~~-~~~~P~l~~w~~r~~~r--p~~~~~~~~ 205 (215)
T PRK13972 159 YSIADIACWPWVNAWTR--QRID-LAMYPAVKNWHERIRSR--PATGQALLK 205 (215)
T ss_pred CCHHHHHHHHHHHHHhh--cCCc-chhCHHHHHHHHHHHhC--HHHHHHHHH
Confidence 99999999887744311 1222 57899999999999999 999998765
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-22 Score=202.87 Aligned_cols=179 Identities=21% Similarity=0.256 Sum_probs=144.0
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc------------cchHHHHHHHHHHHHHhCCCCC
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA------------KESNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~------------r~~~~~~~~i~~dl~~LGi~~d 316 (758)
.+|||+|+|||||+|++++.+.+|| +|...++--++|.+.+ .....+.+.+.+++++|||.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 4799999999999999999888888 3444555556777653 2344677999999999999999
Q ss_pred CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC
Q 043341 317 TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396 (758)
Q Consensus 317 ~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~ 396 (758)
..+++|++.+.+.+++++|+++|.+|... + .+.+.++
T Consensus 87 ~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g--~~~~~~~- 123 (212)
T cd00671 87 VWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------G--ALWLDLT- 123 (212)
T ss_pred eecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------C--cEEEech-
Confidence 98899999999999999999999999321 1 1222221
Q ss_pred CCCCCCCCCcEEEEeCCCCCcccCCccccccccc---ccccccccccCccEE--eeCCCCCCchHHHHHHHHHhCCC-cc
Q 043341 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYD---FACPFVDAKEGITHA--LRSSEYHDRNAQYYRIQEDLGVR-KV 470 (758)
Q Consensus 397 ~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~---~a~~vdD~~~githv--irg~d~~~~~~~~~~l~~alg~~-~p 470 (758)
......|+|+.|+||+ |+|+ +|++++++.+++|++ |+|.||..+.+++..++++||+. .+
T Consensus 124 --~~~~~~d~vl~rsdG~------------~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~ 189 (212)
T cd00671 124 --EFGDDKDRVLVRSDGT------------YTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAK 189 (212)
T ss_pred --hhCCCCCeEEEECCCC------------ccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCC
Confidence 1234579999999977 8886 799999999999999 89999999999999999999986 44
Q ss_pred eE--eeeeeeecc-cccccchh
Q 043341 471 HI--YEFSRLNMV-YTLLSKRK 489 (758)
Q Consensus 471 ~~--~~~~~l~~~-~~klSKR~ 489 (758)
.+ ..|+++.+. |.|||||+
T Consensus 190 ~~~h~~~~~v~~~~~~kmS~R~ 211 (212)
T cd00671 190 KLEHLLYGMVNLPKEGKMSTRA 211 (212)
T ss_pred CeEEEEEEeEEcCCCCCCCCCC
Confidence 33 334677777 88999997
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PRK10542 glutathionine S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=195.09 Aligned_cols=155 Identities=15% Similarity=0.302 Sum_probs=129.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +.. ++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++.+
T Consensus 1 m~l~--~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLF--YKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Ccee--ecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhC
Confidence 4777 554 56899999999999999987421 9999999878999999999999999998
Q ss_pred ---CCC-CCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFY-GQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~-p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.++ |.++.+|+++++|+.++.+.+.+ ..+...++.||+.|+.++||+|+++|+|||+
T Consensus 78 ~~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 78 PDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 455 66788999999999877544331 4567788999999998999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.+... .+.. ...+|+|.+|+++|.++ |+|++++..
T Consensus 158 l~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYA--VKLN-LEGLEHIAAYMQRVAER--PAVAAALKA 197 (201)
T ss_pred HHHHHHHhhc--cCCC-cccchHHHHHHHHHHcC--HHHHHHHHH
Confidence 9999887632 2222 46799999999999999 999999865
|
|
| >PRK11752 putative S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=199.80 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=129.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhc------CCCeeeeec------------------CCccEEEeCCC---cEEechHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLA------GITIPTETS------------------GSAPTFSFSNG---SKLQGTYVL 91 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~------gl~~~~~~~------------------g~vP~L~~~~g---~~l~ES~aI 91 (758)
|+|| +. .|+++++|+++|+++ |++|+.+.+ |+||+|++++| .+|+||.||
T Consensus 45 ~~Ly--~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 45 LQLY--SL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred eEEe--cC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 8998 54 699999999999997 888976432 99999998653 699999999
Q ss_pred HHHHHHhC-CCCCCCHHHHHHHHHHHHhccccCC-------------h-----------HHHHHHHHHHHHhcccCCccc
Q 043341 92 LRYIGRVG-NFYGQNAYEAGEIDEWLDYTPVFSS-------------G-----------SEFENACTYVDKYLERRTFVV 146 (758)
Q Consensus 92 l~yL~~~~-~L~p~~~~era~v~~wl~~~~~~l~-------------~-----------~~l~~~L~~Le~~L~~~~flv 146 (758)
++||++.+ +|+|.++.+|+++++|+.|....+. + ..+.+.|+.||++|+.++||+
T Consensus 122 l~YL~~~~~~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~ 201 (264)
T PRK11752 122 LLYLAEKFGAFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIA 201 (264)
T ss_pred HHHHHHhcCCcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99999999 7999999999999999988654310 1 245678899999999889999
Q ss_pred CCCCCHhHHHHHHHHhhhhccc----ccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 147 GHSLSIVDIAIWSALAGTGQRW----DSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 147 G~~lTlADi~l~~~L~~l~~~~----~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+++|+|||++++.+.++.... ........||+|.+|+++|.++ |+|++++..
T Consensus 202 Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~r--Ps~k~~~~~ 258 (264)
T PRK11752 202 GDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAER--PAVKRGRIV 258 (264)
T ss_pred CCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhC--HHHHHHHhc
Confidence 9999999999998886652210 1111246899999999999999 999998653
|
|
| >PRK10357 putative glutathione S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=191.70 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=129.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |++|+|++++|.+|+||.||++||++.+ .
T Consensus 1 ~~Ly--~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 78 (202)
T PRK10357 1 MKLI--GSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPA 78 (202)
T ss_pred Ceee--cCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCC
Confidence 5788 888999999999999999999997432 9999999778999999999999999988 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|+|.++.+++++++|+.|....+. ...+...|+.||++|.+++ ++|+++|+|||+
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHH
Confidence 899999999999999877643321 1356777899999998878 999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+++.+.++............+|+|.+|+++|.++ |+|+++
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~r--p~~~~~ 197 (202)
T PRK10357 158 IACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQR--ESFART 197 (202)
T ss_pred HHHHHHHHHhcccCcchhhcChHHHHHHHHHhcC--hhhhhc
Confidence 9999887522111222246799999999999999 999875
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=219.61 Aligned_cols=233 Identities=17% Similarity=0.218 Sum_probs=171.1
Q ss_pred cCeeeecc-CCCCCCCccchhhHHHHHHHHHHcc--cCc---eEEEEecCCCcc-------------cchHHHHHHHHHH
Q 043341 247 IGKVRLRF-APEPSGYLHIGHSKAALLNQYFAQR--YQG---QLIVRFDDTNPA-------------KESNEFVDNLLKD 307 (758)
Q Consensus 247 ~~~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G---~~ilRieDtd~~-------------r~~~~~~~~i~~d 307 (758)
..+|+.-| +|||||+|||||+|++++++.+||- +.| .++.-++|.+.+ ...+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777 9999999999999999999999983 345 455556888743 3456788999999
Q ss_pred HHHhCCCCCCcccccCC--HHHHHHHHHHHHHhCcee-ccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccC
Q 043341 308 IETLGIKYETVTYTSDY--FPDLMEMAENLIRQGKAY-VDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSER 384 (758)
Q Consensus 308 l~~LGi~~d~~~~~S~~--~~~~~~~~~~Li~~G~aY-~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 384 (758)
|++|||.+|.++++|+. .+.+.+++++|.++|.+| ...
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~--------------------------------------- 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESD--------------------------------------- 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeC---------------------------------------
Confidence 99999999977777764 357899999999999999 311
Q ss_pred CceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEE--eeCCCCCCchHHHHHHH
Q 043341 385 GLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHA--LRSSEYHDRNAQYYRIQ 462 (758)
Q Consensus 385 ~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githv--irg~d~~~~~~~~~~l~ 462 (758)
+.+.++++. .++..|+||+|+||++.+.+. |+|+..+.+.. .+++ |.|.||..|..++..++
T Consensus 231 ---Ga~~~~~~~---~~~~~~~vl~ksdG~~~Y~t~---------Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~ 294 (507)
T PRK01611 231 ---GALWVRLTE---FGDDKDRVLIKSDGTYTYFTR---------DIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAAL 294 (507)
T ss_pred ---CcEEEEchh---hCCCCCeEEEECCCCccchHH---------HHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHH
Confidence 122333321 122358999999988433222 45555554444 5566 56999999999999999
Q ss_pred HHhCCCcc--eEeee---eeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH----------------
Q 043341 463 EDLGVRKV--HIYEF---SRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV---------------- 520 (758)
Q Consensus 463 ~alg~~~p--~~~~~---~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~---------------- 520 (758)
++||+..+ .++.| +++.- .|.|||||+++ ..++.+|++.++..
T Consensus 295 ~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~vgi 359 (507)
T PRK01611 295 KALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEAVGI 359 (507)
T ss_pred HHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 99998744 32444 33322 35699999963 34677777775666
Q ss_pred HHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
+|+|+|+++. ...++..|||+++.+.+++
T Consensus 360 dAiR~~~L~~-~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 360 DAVRYFDLSR-SRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred ceeEehhhhc-CCCCCCccCHHHHHhhcCC
Confidence 8999999876 7788999999999888754
|
|
| >PRK15113 glutathione S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=189.23 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=127.8
Q ss_pred eEEEecccC--CCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFP--ADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~--~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +.. .|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++.
T Consensus 6 ~~Ly--~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~-~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 6 ITLY--SDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH-DDFELSESSAIAEYLEER 82 (214)
T ss_pred EEEE--eCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE-CCEEEecHHHHHHHHHHH
Confidence 7898 654 689999999999999999987542 99999997 789999999999999999
Q ss_pred C---C---CCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhccc-CCcccC
Q 043341 99 G---N---FYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLER-RTFVVG 147 (758)
Q Consensus 99 ~---~---L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~-~~flvG 147 (758)
+ . |+|.++.+++++++|+.|..+.+. .+.+.+.++.||++|+. ..|++|
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G 162 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFG 162 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeC
Confidence 8 3 999999999999999987753221 15567888999999975 479999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+ +|+|||++++.+.++.. .+.. . .|+|.+|+++|.++ |+|++++++-
T Consensus 163 ~-~TlADi~l~~~l~~~~~--~~~~-~--~p~l~~~~~r~~~r--p~~~~~~~~~ 209 (214)
T PRK15113 163 E-WCIADTDLALMLNRLVL--HGDE-V--PERLADYATFQWQR--ASVQRWLALS 209 (214)
T ss_pred C-ccHHHHHHHHHHHHHHH--cCCC-C--CHHHHHHHHHHhcC--HHHHHHHHHh
Confidence 6 99999999999887522 2222 2 29999999999999 9999998764
|
|
| >TIGR01262 maiA maleylacetoacetate isomerase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=186.41 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=129.1
Q ss_pred EEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 41 IKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 41 L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|| ++..|+++++++++|.++|++|+.+.+ |++|+|++ ||.+|+||.+|++||++.+
T Consensus 2 Ly--~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 2 LY--SYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI-DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred cc--cCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE-CCEEeecHHHHHHHHHHhCCC
Confidence 55 678899999999999999999886311 99999997 8899999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhccc--CCcccCCCC
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLER--RTFVVGHSL 150 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~--~~flvG~~l 150 (758)
.|+|.++.+++++++|+.+....+.+ +.+.+.|+.||++|+. ++||+|+++
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 59999999999999998876543210 2466788999999986 359999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+||+++++.+.++.. .... ...||+|.+|+++|.++ |++++++...
T Consensus 159 T~ADi~~~~~l~~~~~--~~~~-~~~~p~l~~~~~~~~~r--p~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAER--FGVD-LTPYPTLRRIAAALAAL--PAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHH--cCCC-cccchHHHHHHHHHhcC--HHHHHhCccc
Confidence 9999999999987532 2222 46899999999999999 9999987653
|
Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. |
| >KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-20 Score=183.28 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=135.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
.+|| ++..||+++|++|+|+++||+|+.+.. ++||+|++ +|..|.||+.|++||++.+
T Consensus 10 vrL~--~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~H-n~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLL--GMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEH-NGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEE--EeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEE-CCceehhhHHHHHHHHhhccCC
Confidence 5788 999999999999999999999998654 99999999 8888999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcc-cCCcccCCCCCHhHHHHHH
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLE-RRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~-~~~flvG~~lTlADi~l~~ 159 (758)
+++|+||.+||+.+.|+++.+..+.. +++...|..||+.|. +.+|+.|+++++.||++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p 166 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGP 166 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHh
Confidence 79999999999999999999864331 458889999999999 8899999999999999997
Q ss_pred HHhhhhcccc-----cccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWD-----SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~-----~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.+...... .......+|+|.+|.++|.++ +++++++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~--~~V~~~~p~ 211 (231)
T KOG0406|consen 167 SFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKED--EAVKAVLPD 211 (231)
T ss_pred hHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcC--hhHHhhcCC
Confidence 7666422211 122356899999999999999 999887654
|
|
| >COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=184.27 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=128.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|| +...|++++++++++.++|++|+.+.+ |+||+|+++||.+|+||.||++||++.+
T Consensus 1 ~~L~--~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLY--GSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred Ceee--cCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCC
Confidence 5788 888889999999999999999998643 9999999977779999999999999999
Q ss_pred C-CCCCCHH---HHHHHHHHHHhccccCCh-------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 100 N-FYGQNAY---EAGEIDEWLDYTPVFSSG-------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 100 ~-L~p~~~~---era~v~~wl~~~~~~l~~-------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
. |+|.++. +|+++.+|+.|..+.+.+ ..+...+..+|..|+.++|++|+++
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 158 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRF 158 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 3 9998885 899999999988655442 3456778899999999999999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHH
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLD 196 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~ 196 (758)
|+||+++++.+.++... +.. ...+|++.+|+++|.++ |+++
T Consensus 159 tiAD~~~~~~~~~~~~~--~~~-~~~~p~l~~w~~r~~~r--p~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLALL--GEE-LADYPALKAWYERVLAR--PAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhhc--Ccc-cccChHHHHHHHHHHcC--Cchh
Confidence 99999999999985222 221 26799999999999999 9865
|
|
| >KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=185.27 Aligned_cols=161 Identities=19% Similarity=0.428 Sum_probs=140.4
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|.|+|| ++..+++++++.++++++|++|+...+ |+||+|++ +|..|+||.||+.||+++
T Consensus 1 ~~~~ly--~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d-~~~~l~eS~AI~~Yl~~k 77 (226)
T KOG0867|consen 1 MKLKLY--GHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED-GGLTLWESHAILRYLAEK 77 (226)
T ss_pred CCceEe--ecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec-CCeEEeeHHHHHHHHHHH
Confidence 558999 999999999999999999999998743 99999998 799999999999999998
Q ss_pred C----C-CCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccC
Q 043341 99 G----N-FYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVG 147 (758)
Q Consensus 99 ~----~-L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG 147 (758)
| . |+|.++.+|+.+++|+.|..+.+.+ ..+..+++.+|.+|.++.|++|
T Consensus 78 y~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g 157 (226)
T KOG0867|consen 78 YGPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAG 157 (226)
T ss_pred cCCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 7 3 9999999999999999987776542 6778899999999999999999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++|+||+.+.+.+..+...........++|++.+|++++.++ |++++.....
T Consensus 158 ~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~--P~~~e~~~~~ 210 (226)
T KOG0867|consen 158 DQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKR--PAYEEANEKG 210 (226)
T ss_pred CcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhC--ccHHHHHHHH
Confidence 9999999999999998632222233468899999999999999 9988876654
|
|
| >KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-20 Score=170.93 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=136.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
..|| ++..|+|+.|||++|+++|++|+...+ ++||+|++ ||.+|+||.||++||++.+
T Consensus 6 piLY--SYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i-~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 6 PILY--SYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI-DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred chhh--hhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE-CCEEeehHHHHHHHHHhcC
Confidence 4678 889999999999999999999998654 89999999 9999999999999999999
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCCh-----------------------HHHHHHHHHHHHhccc--CCcccCCCCC
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSSG-----------------------SEFENACTYVDKYLER--RTFVVGHSLS 151 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~~-----------------------~~l~~~L~~Le~~L~~--~~flvG~~lT 151 (758)
+|+|.++..||.+++......+.+.+ .-+.+.+..||..|+. ..|.+|+++|
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceee
Confidence 79999999999999999988888774 3456788999999975 4899999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+++.+.++.. ....++ +..||-+.|..+.+.+. |+|+.++.+
T Consensus 163 iADl~L~pqv~nA--~rf~vd-l~PYPti~ri~e~l~el--paFq~ahP~ 207 (217)
T KOG0868|consen 163 IADLCLPPQVYNA--NRFHVD-LTPYPTITRINEELAEL--PAFQAAHPD 207 (217)
T ss_pred hhhhccchhhhhh--hhcccc-CCcCchHHHHHHHHHhC--HHHHhcCCC
Confidence 9999999999874 333443 77899999999999999 999887644
|
|
| >PRK10387 glutaredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-19 Score=178.47 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=116.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~ 102 (758)
|+|| ++..|+++.+|+++|+++|++|+.+.+ |+||+|+.+||.+|+||.||++||++++ +++
T Consensus 1 ~~Ly--~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLY--IYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEE--eCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 5898 888999999999999999999998543 7999997668999999999999999998 455
Q ss_pred CCCHHHHHHHHHHHHhccccCC---------------------------------------------hHHHHHHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS---------------------------------------------GSEFENACTYVDK 137 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~---------------------------------------------~~~l~~~L~~Le~ 137 (758)
+. .+++.+++|+.+....+. .+.+...|+.||+
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 156 (210)
T PRK10387 79 TG--KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDP 156 (210)
T ss_pred CC--cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 41 257788888765432111 0245567799999
Q ss_pred hcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 138 ~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+|++ +|++|+++|+||+++++.+.++.. ... ...+|+|.+|+++|.++ |++
T Consensus 157 ~L~~-~~l~G~~~s~ADi~l~~~l~~~~~-~~~---~~~~p~l~~w~~r~~~r--~~~ 207 (210)
T PRK10387 157 LIVK-PNAVNGELSTDDIHLFPILRNLTL-VKG---IEWPPRVADYRDNMSKK--TQV 207 (210)
T ss_pred HhcC-ccccCCCCCHHHHHHHHHHhccee-ecC---CCCCHHHHHHHHHHHHH--hCC
Confidence 9986 999999999999999999998632 122 23469999999999999 764
|
|
| >PTZ00057 glutathione s-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=175.91 Aligned_cols=154 Identities=14% Similarity=0.213 Sum_probs=122.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeee------------------ec---CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTE------------------TS---GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~------------------~~---g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
++|| +++.++++.+++++|+++|++|+.+ .. |++|+|++ ||.+|+||.||++||++
T Consensus 5 ~~L~--y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 5 IVLY--YFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM-DNIIFAQSQAIVRYLSK 81 (205)
T ss_pred eEEE--ecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE-CCEEEecHHHHHHHHHH
Confidence 6888 8889999999999999999999762 12 99999998 78999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccc-cC-----------------ChHHHHHHHHHHHHhcccC--CcccCCCCCHhHHHH
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPV-FS-----------------SGSEFENACTYVDKYLERR--TFVVGHSLSIVDIAI 157 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~-~l-----------------~~~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~l 157 (758)
++++.|.+..+++.+ |+.+... .+ ..+.+.+.+..||+.|+.+ +|++|+++|+||+++
T Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l 159 (205)
T PTZ00057 82 KYKICGESELNEFYA--DMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAV 159 (205)
T ss_pred HcCCCCCCHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHH
Confidence 997777665555444 3222211 00 0156677889999999764 799999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.+.++... ... .+..||+|.+|+++|.++ |++++++++
T Consensus 160 ~~~~~~~~~~-~~~-~l~~~P~l~~~~~r~~~~--P~~k~y~~~ 199 (205)
T PTZ00057 160 FNLYDDIETK-YPN-SLKNFPLLKAHNEFISNL--PNIKNYISN 199 (205)
T ss_pred HHHHHHHHHh-Chh-hhccChhHHHHHHHHHhC--hHHHHHHHh
Confidence 9988775211 222 257899999999999999 999999865
|
|
| >PLN02378 glutathione S-transferase DHAR1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=171.21 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=117.8
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC-CCCCCCHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFYGQNAYEA 109 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~p~~~~er 109 (758)
+..|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ .-...++.++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~-~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKI-DDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEE-CCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 45699999999999999999997654 99999987 7789999999999999998 2111467788
Q ss_pred HHHHHHHHhccccC------C---hHHHHHHHHHHHHhcc--cCCcccCCCCCHhHHHHHHHHhhhhccc---ccccccc
Q 043341 110 GEIDEWLDYTPVFS------S---GSEFENACTYVDKYLE--RRTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSK 175 (758)
Q Consensus 110 a~v~~wl~~~~~~l------~---~~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~ 175 (758)
+++++++......+ . ...+.+.|..||++|+ +++|++|+++|+||+++++.+.++.... .......
T Consensus 96 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~ 175 (213)
T PLN02378 96 ASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPE 175 (213)
T ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchh
Confidence 88877654221100 0 1466778999999998 4699999999999999999987652111 1122246
Q ss_pred cChhHHHHHHHHHhhccchHHHHHH
Q 043341 176 KYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 176 ~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.||+|.+|+++|.++ |++++++.
T Consensus 176 ~~p~l~~w~~~~~~r--pa~~~~~~ 198 (213)
T PLN02378 176 SFPHVHNYMKTLFSL--DSFEKTKT 198 (213)
T ss_pred HhHHHHHHHHHHhcC--CCeecccC
Confidence 799999999999999 99987754
|
|
| >PLN02817 glutathione dehydrogenase (ascorbate) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=172.95 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=117.9
Q ss_pred CCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC-CCCCCCHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFYGQNAYEAGE 111 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~p~~~~era~ 111 (758)
.++++++++++|+++|++|+.+.+ |+||+|++ +|..|+||.+|++||++.+ .-...++.++++
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~-d~~~L~ES~aI~~YL~e~~p~~~L~~~~era~ 150 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKL-DEKWVADSDVITQALEEKYPDPPLATPPEKAS 150 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE-CCEEEecHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 488999999999999999997543 99999998 5679999999999999998 211146888999
Q ss_pred HHHHHHhccccC----C-----hHHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHHHHhhhhccc---ccccccccCh
Q 043341 112 IDEWLDYTPVFS----S-----GSEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSKKYQ 178 (758)
Q Consensus 112 v~~wl~~~~~~l----~-----~~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~~~P 178 (758)
+.+|+......+ . .+.+...+..||++|+. ++||+|+++|+||+++++.+.++.... .++.....+|
T Consensus 151 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P 230 (265)
T PLN02817 151 VGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLP 230 (265)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCH
Confidence 998765322111 0 14567888999999974 699999999999999999987752211 1222246899
Q ss_pred hHHHHHHHHHhhccchHHHHHH
Q 043341 179 NLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 179 ~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+|.+|+++|.++ |+|++++.
T Consensus 231 ~L~~w~~ri~~r--ps~~~~~~ 250 (265)
T PLN02817 231 FVKSYMKNIFSM--ESFVKTRA 250 (265)
T ss_pred HHHHHHHHHhcc--hhHhhcCC
Confidence 999999999999 99988744
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=191.86 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHh
Q 043341 300 FVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMI 379 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 379 (758)
..+.|.++|++|||.+|.+...|.+-+...+++++|.++|.+|..
T Consensus 236 ~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~----------------------------------- 280 (562)
T PRK12451 236 SLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEES----------------------------------- 280 (562)
T ss_pred HHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEec-----------------------------------
Confidence 357889999999999996556777777788999999999998821
Q ss_pred cCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccccccc-CccEEee--CCCCCCchH
Q 043341 380 AGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKE-GITHALR--SSEYHDRNA 456 (758)
Q Consensus 380 ~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~-githvir--g~d~~~~~~ 456 (758)
+++++++++. .+ ..|.|+.|+||+..+.+ =|+|+..+-+.+ +.+++|- |.||..|-.
T Consensus 281 -------dGa~~~~~~~---~g-~~~~vl~ksDGt~~Y~t---------~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~ 340 (562)
T PRK12451 281 -------EGALVVNLEE---EG-MPPCLIRKSDGATIYAT---------RDLTAALYRQNTFGFDKALYVVGPEQSLHFN 340 (562)
T ss_pred -------CCeEEEEecc---cC-CCceEEEeCCCccccch---------hHHHHHHHHhhccCCCEEEEEeCCcHHHHHH
Confidence 2234444421 12 26899999998843222 267777766654 6777764 999999999
Q ss_pred HHHHHHHHhCCCcc---eEeeeeeeecccccccchh-----hhhhhhcCcc----------CCCCCCCcchHHHHHHcCC
Q 043341 457 QYYRIQEDLGVRKV---HIYEFSRLNMVYTLLSKRK-----LLWFVQNGKV----------DGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 457 ~~~~l~~alg~~~p---~~~~~~~l~~~~~klSKR~-----~~~li~~g~~----------~gwddpr~~tl~~l~~~G~ 518 (758)
+...++++||+..+ .+..|+++++.|+|||||+ +++|+++..- ++++++ ....+.+
T Consensus 341 ~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~------~~~a~~v 414 (562)
T PRK12451 341 QFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQK------EEVAKQV 414 (562)
T ss_pred HHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccH------HHHHHHh
Confidence 99999999998633 3556688888889999999 4555544110 011110 0111225
Q ss_pred CHHHHHHHHHHhccccccccccHHHHHHHHHh---hccccCCcchhhhc
Q 043341 519 LVEALIQFILEQGASKNLNLMEWDKLWTINKK---IIDPVCPRHTAVIE 564 (758)
Q Consensus 519 ~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~---~l~~~~~r~~~v~~ 564 (758)
...|+|++++++ ...++.+|||+++.+++.. ||.-.--|...++.
T Consensus 415 g~~Airy~~l~~-~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlr 462 (562)
T PRK12451 415 GVGAVIFHDLKN-ERMHNIEFSLENMLKFEGETGPYVQYTHARACSILR 462 (562)
T ss_pred ccceeeeHHhhc-CCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHH
Confidence 578999998887 7788999999998776533 66655555444543
|
|
| >TIGR00862 O-ClC intracellular chloride channel protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=165.74 Aligned_cols=151 Identities=12% Similarity=0.172 Sum_probs=118.6
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--C----CCCC
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--N----FYGQ 104 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~----L~p~ 104 (758)
...|+++++|++++.++|++|+...+ |+||+|++ +|.+|+||.+|++||++.+ . +.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~-~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY-NTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE-CCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 35789999999999999999998654 89999987 8899999999999999987 2 4556
Q ss_pred CHHHHHHHH-HHHHh---ccccCC------hHHHHHHHHHHHHhcc------------------cCCcccCCCCCHhHHH
Q 043341 105 NAYEAGEID-EWLDY---TPVFSS------GSEFENACTYVDKYLE------------------RRTFVVGHSLSIVDIA 156 (758)
Q Consensus 105 ~~~era~v~-~wl~~---~~~~l~------~~~l~~~L~~Le~~L~------------------~~~flvG~~lTlADi~ 156 (758)
++..++... -|..+ ....-. .+.+.+.++.||++|. .++|++|+++|+|||+
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~ 174 (236)
T TIGR00862 95 HPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCN 174 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHH
Confidence 776666533 22222 211111 1347889999999997 4799999999999999
Q ss_pred HHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 157 IWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 157 l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+++.+.++... ..+++..+.+|+|.+|++++.++ |+|+.++
T Consensus 175 l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~--~sf~~t~ 218 (236)
T TIGR00862 175 LLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAR--EEFTNTC 218 (236)
T ss_pred HHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhcc--chHHhhC
Confidence 99999987422 23444468899999999999999 9999863
|
These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=186.33 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHH
Q 043341 300 FVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKE 377 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 377 (758)
..+.|.++|+.||+++|.+++.|+.+. .+.++++.|.++|++|..+
T Consensus 241 ~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~-------------------------------- 288 (577)
T COG0018 241 SLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDD-------------------------------- 288 (577)
T ss_pred HHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeC--------------------------------
Confidence 457899999999999998887777543 5889999999999999421
Q ss_pred HhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEee--CCCCCCch
Q 043341 378 MIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR--SSEYHDRN 455 (758)
Q Consensus 378 ~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvir--g~d~~~~~ 455 (758)
| ..++. .+.....++..|.|+.|+||+..+.+. |+|++.+-+..|.+.+|- |.||+.|.
T Consensus 289 -------G-A~~vd--l~~~~~~gd~~~~vl~KSDGt~lY~t~---------DIAy~~~K~~~~~d~~IyV~gadq~~~~ 349 (577)
T COG0018 289 -------G-ALVVD--LLKFKKFGDDKDRVLQKSDGTYLYFTR---------DIAYHLYKFERGFDKLIYVLGADQHGHF 349 (577)
T ss_pred -------C-eEEEe--hhhhhhcCCCCCeEEEEcCCCeeeehh---------HHHHHHHHHhcCCCEEEEEeCCcchhHH
Confidence 1 11111 110014567789999999998433333 677777777677777764 99999999
Q ss_pred HHHHHHHHHhCCCcce-Eeee---eeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHc--------------
Q 043341 456 AQYYRIQEDLGVRKVH-IYEF---SRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR-------------- 516 (758)
Q Consensus 456 ~~~~~l~~alg~~~p~-~~~~---~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~-------------- 516 (758)
.+...+++++|+..+. +..| +.+.. .+.|||||.+. ..||+++++.
T Consensus 350 ~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~---------------~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 350 KQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred HHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc---------------eEEHHHHHHHHHHHhhhHhhhhhh
Confidence 9999999999988762 3333 23333 35689999952 2355554433
Q ss_pred -------CCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 517 -------GLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 517 -------G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
-+..+|+|+++++. ...++..|||++..+++.
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~-~~~~~~~Fd~d~~lsfeg 453 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSR-SRDKDYVFDWDKALSFEG 453 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhc-CCCCCcEeeHHHHHhccC
Confidence 03388999999886 778899999999999887
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=179.99 Aligned_cols=276 Identities=15% Similarity=0.100 Sum_probs=169.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc-------------cchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA-------------KESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||++||||+|+.+..+.++| ++...|+..+||.+.+ .....+.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56677899999999999999998888887 4566788888888643 33446889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------c-CC----chHHHHHHhcCC-CCCcCCCCCHH----H--
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------D-DT----PREQMQKERMDG-IESKCRNNSIE----E-- 370 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~-~~----~~e~~~~~~~~~-~~~~~r~~~~~----~-- 370 (758)
||.+|.++++++ +.+.+++++.+|.++|++|. | .| +..++. ..+ ....|.. +++ +
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---~~~p~~~~~~~-~~~~~~~~~~ 159 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---EDGYRCPPTGA-PVEWVEEESY 159 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---CCCCCCCCCCC-cceEEecCeE
Confidence 999997777776 88999999999999999992 2 12 111111 111 1112222 111 0
Q ss_pred --HHHHH----HHHhcCccC-CceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCC------cc-ccccccc-----
Q 043341 371 --NMKLW----KEMIAGSER-GLECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGS------KY-KVYPTYD----- 430 (758)
Q Consensus 371 --~~~~~----~~~~~g~~~-~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~------~~-~~~PtY~----- 430 (758)
.+..| .+..++... ..+...+-++. .-.....+|+.|+|.... +.+.-++ .| +...+|.
T Consensus 160 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~-~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPDFIQPASRRNEVI-SFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCCccCCHHHHHHHH-HHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 01111 111111000 00000000000 001224789999993211 1111111 12 1111111
Q ss_pred -cccccc--ccc--cCcc-EEeeCCCCC-CchHHHHHHHHHhCCCcceEe-eeeeeecccccccchhhhhhhhcCccCCC
Q 043341 431 -FACPFV--DAK--EGIT-HALRSSEYH-DRNAQYYRIQEDLGVRKVHIY-EFSRLNMVYTLLSKRKLLWFVQNGKVDGW 502 (758)
Q Consensus 431 -~a~~vd--D~~--~git-hvirg~d~~-~~~~~~~~l~~alg~~~p~~~-~~~~l~~~~~klSKR~~~~li~~g~~~gw 502 (758)
.+|... +.. ...+ |+ -|.|.. .|...+..+..++|...|..+ .++++.++|+|||||+++
T Consensus 239 p~~~~~~~~~~~~~~~~D~~~-~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN----------- 306 (511)
T PRK11893 239 PDDEELLAELFNKYWPADVHL-IGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN----------- 306 (511)
T ss_pred ccccccchhHHHhcCCCcceE-ecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc-----------
Confidence 122110 100 0111 33 377876 566667677777887777544 458999999999999974
Q ss_pred CCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 503 DDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 503 ddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
+.++.++.+. ++++++|.|+++.+...++.+|+++.+...
T Consensus 307 ----~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~ 346 (511)
T PRK11893 307 ----VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINR 346 (511)
T ss_pred ----EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHH
Confidence 4478888888 999999999999888899999999998654
|
|
| >KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=156.00 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=132.7
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+++|+ |+...+.+..+|+++++.|++|+...+ |++|+|.+ ||..|.+|.||++||+++++|
T Consensus 2 ~~ykL~--Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~v-Dg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 2 PPYKLT--YFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEV-DGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred CceEEE--ecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeE-CCEeeccHHHHHHHHHHHhCc
Confidence 347999 999999999999999999999998543 99999999 799999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC---------------h--------HHHHHHHHHHHHhcc--cCCcccCCCCCHhHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS---------------G--------SEFENACTYVDKYLE--RRTFVVGHSLSIVDIA 156 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~---------------~--------~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~ 156 (758)
.|.++.|+++++...+-...... . ......+..++..|. .+.||+|+++|+||++
T Consensus 79 ~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~ 158 (206)
T KOG1695|consen 79 AGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLV 158 (206)
T ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHH
Confidence 99999999999977653322211 0 145567788999998 4589999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++..+..+... ........+|+|.++..++.+. |.+++.+++
T Consensus 159 i~e~l~~l~~~-~~~~~~~~~P~L~a~~~kv~~~--p~ik~~i~~ 200 (206)
T KOG1695|consen 159 IAEHLDTLEEL-LDPSALDHFPKLKAFKERVSSI--PNIKKYLES 200 (206)
T ss_pred HHHHHHHHHHh-cCchhhccChHHHHHHHHHhcC--chHHHHHhc
Confidence 99999987332 3333467889999999999999 999998875
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=185.78 Aligned_cols=253 Identities=17% Similarity=0.253 Sum_probs=165.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEe---------------------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRF--------------------------------------- 288 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRi--------------------------------------- 288 (758)
++.=-+|||+|+|||||+|++++++.+||- +.|.-+.|.
T Consensus 115 ~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (566)
T TIGR00456 115 IIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGF 194 (566)
T ss_pred EEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHH
Confidence 555668999999999999999999999982 222222221
Q ss_pred -------------------------cCCCc------ccchHHHHHHHHHHHHHhCCCCCCcccccC--CHHHHHHHHHHH
Q 043341 289 -------------------------DDTNP------AKESNEFVDNLLKDIETLGIKYETVTYTSD--YFPDLMEMAENL 335 (758)
Q Consensus 289 -------------------------eDtd~------~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~--~~~~~~~~~~~L 335 (758)
+.-|+ ++..+...+.|.++|++||+.+|.+.+.++ +...+.+++++|
T Consensus 195 Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L 274 (566)
T TIGR00456 195 YVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDL 274 (566)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHH
Confidence 00011 011223468889999999999998775555 334578888999
Q ss_pred HHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCC-CCcEEEEeCCC
Q 043341 336 IRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSL-RDPVYYRCNPI 414 (758)
Q Consensus 336 i~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~-~D~vl~R~~~~ 414 (758)
.++|.+|.. ++++++++. .++. .|.|+.|+||+
T Consensus 275 ~~~g~~~~~-------------------------------------------Ga~~~~~~~---~~d~~~~~vl~ksDGt 308 (566)
T TIGR00456 275 KEKGLVVED-------------------------------------------GALWLDLTL---FGDKDKDRVLQKSDGT 308 (566)
T ss_pred HHCCCEEEc-------------------------------------------CCEEEEccc---ccCCCCCeEEEECCCC
Confidence 999988810 123333321 1122 58999999988
Q ss_pred CCcccCCcccccccccccccccccccCccEEee--CCCCCCchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhh-
Q 043341 415 PHHRIGSKYKVYPTYDFACPFVDAKEGITHALR--SSEYHDRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKL- 490 (758)
Q Consensus 415 ~~~~~~~~~~~~PtY~~a~~vdD~~~githvir--g~d~~~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~- 490 (758)
..+.+. |+|+...-...+.+.+|- |.||..|-.+...++++||++.| .+.++++-.+.+.+||||++
T Consensus 309 ~~Y~t~---------DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 309 YLYLTR---------DIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN 379 (566)
T ss_pred ceechh---------hHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence 332222 666666655557777764 99999999999999999998766 45455665666789999994
Q ss_pred ----hhhhhcCcc-CCCCCCCcc------hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH---hhccccC
Q 043341 491 ----LWFVQNGKV-DGWDDPRFP------TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK---KIIDPVC 556 (758)
Q Consensus 491 ----~~li~~g~~-~gwddpr~~------tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~---~~l~~~~ 556 (758)
..++++..- .+ ... ....+.+. +..+++|+|+++.. ..++.+|||+++.+.|. -+|.-..
T Consensus 380 ~V~~~dll~~~~~ra~----~~i~~~~~~~~~~~~~~-vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~ 453 (566)
T TIGR00456 380 VISLDNLLDEASKRAG----NVITIKNDLEEEDVADA-VGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAH 453 (566)
T ss_pred eeeHHHHHHHHHHHHH----HHHHhcCCccHHHHHHH-hcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHH
Confidence 222222000 00 000 01134444 67799999999985 68999999999877643 2444444
Q ss_pred Ccchhhh
Q 043341 557 PRHTAVI 563 (758)
Q Consensus 557 ~r~~~v~ 563 (758)
-|...++
T Consensus 454 aR~~SIl 460 (566)
T TIGR00456 454 ARICSIL 460 (566)
T ss_pred HHHHHHH
Confidence 4544444
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >TIGR02182 GRXB Glutaredoxin, GrxB family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=159.29 Aligned_cols=144 Identities=14% Similarity=0.239 Sum_probs=110.4
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCCC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFYG 103 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~p 103 (758)
+|| ++..||+|++|+++|.++|++|+.+.+ |++|+|+.+||.+|+||.+|++||++++ ++++
T Consensus 1 ~Ly--~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLY--IYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred Cee--cCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 467 788899999999999999999997532 9999998568999999999999999998 3443
Q ss_pred CCHHHHHHHHHHHHhcccc----CC--------------------------------------h---HHHHHHHHHHHHh
Q 043341 104 QNAYEAGEIDEWLDYTPVF----SS--------------------------------------G---SEFENACTYVDKY 138 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~----l~--------------------------------------~---~~l~~~L~~Le~~ 138 (758)
. ..++++.+|+.+.... +. . ..+...|+.||++
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (209)
T TIGR02182 79 G--KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKL 156 (209)
T ss_pred C--CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2 2456667776432211 10 0 3467788999999
Q ss_pred cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccCh-hHHHHHHHHHhhccchH
Q 043341 139 LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQ-NLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 139 L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P-~L~rW~~~i~~~~~p~~ 195 (758)
|.+++|++| .+|+|||++++.+.++.. ..+. .+| +|.+|+++|.++ +++
T Consensus 157 L~~~~~l~g-~~TiADi~l~~~l~~~~~-~~~~----~~p~~l~~w~~Ri~ar--~~~ 206 (209)
T TIGR02182 157 IDGPNAVNG-ELSEDDILVFPLLRNLTL-VAGI----NWPSRVADYLDNMSKK--SKV 206 (209)
T ss_pred HhCccccCC-CCCHHHHHHHHHhcCeee-ecCC----CCChHHHHHHHHHHHH--hCC
Confidence 999999965 699999999999988622 1111 256 999999999998 643
|
This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress. |
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=177.09 Aligned_cols=288 Identities=14% Similarity=0.071 Sum_probs=174.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCC-------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~ 310 (758)
-++|=-+|+|||.+|||||++.++.+.+||- +...|+.-+||.+ |.....++.+.+.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 4888889999999999999999999999983 3445666666654 333445678889999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHh-cCCCCCcCCCCCHH----H----HH
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKER-MDGIESKCRNNSIE----E----NM 372 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~-~~~~~~~~r~~~~~----~----~~ 372 (758)
|||.+|.++++++ |.+..+++..+|.++|++| .|..+...+.+.. ..+..|++.+.+++ + .|
T Consensus 151 l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~L 230 (616)
T PLN02224 151 LDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFAL 230 (616)
T ss_pred cCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEh
Confidence 9999998888777 7788999999999999999 2321111111111 01122333333321 1 11
Q ss_pred HHH----HHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeC---CCCCcccCC----cc-ccccccccccc--ccc-
Q 043341 373 KLW----KEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCN---PIPHHRIGS----KY-KVYPTYDFACP--FVD- 437 (758)
Q Consensus 373 ~~~----~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~---~~~~~~~~~----~~-~~~PtY~~a~~--vdD- 437 (758)
..| ++..+..........|.+.-..--...+.|+-+-|.. |.+-|...+ -| +....|--++- -++
T Consensus 231 s~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~ 310 (616)
T PLN02224 231 SKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQ 310 (616)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhccccccc
Confidence 122 2222111000000000000000112346787777742 111111111 11 11122210000 000
Q ss_pred --------cccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCc
Q 043341 438 --------AKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRF 507 (758)
Q Consensus 438 --------~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~ 507 (758)
.--..-|++ |.|.+ .|+...-.++.++|++.|. ++.+++|.++|.|||||+++.
T Consensus 311 ~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~--------------- 374 (616)
T PLN02224 311 NLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNT--------------- 374 (616)
T ss_pred ccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCcc---------------
Confidence 001123554 88877 5777777777888988884 455589999999999999642
Q ss_pred chHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHhhcc
Q 043341 508 PTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKKIID 553 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~~l~ 553 (758)
.+..++.++ |++|++|.|++..+...++.+|+++.+... |.+.++
T Consensus 375 i~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan 420 (616)
T PLN02224 375 LEPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLAN 420 (616)
T ss_pred CCHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 356677777 999999999999888889999999986544 555555
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-16 Score=178.70 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhc
Q 043341 301 VDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIA 380 (758)
Q Consensus 301 ~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 380 (758)
.+.+.+++++|||++|. .-.|.+-+.+.++++.|.++|.+|..
T Consensus 242 ~~~~~~~y~~l~V~fd~-~ges~y~~~~~~vi~~L~~~g~~~e~------------------------------------ 284 (576)
T PLN02286 242 RREFEKVYQRLRVELEE-KGESFYNPYIPGVIEELESKGLVVES------------------------------------ 284 (576)
T ss_pred HHHHHHHHHHhCCeeee-cCchhhhhhHHHHHHHHHHCCCEEee------------------------------------
Confidence 35677889999999986 34555666678888999999988832
Q ss_pred CccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccc---ccccccccccc-CccEEee--CCCCCCc
Q 043341 381 GSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTY---DFACPFVDAKE-GITHALR--SSEYHDR 454 (758)
Q Consensus 381 g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY---~~a~~vdD~~~-githvir--g~d~~~~ 454 (758)
++++++..+ .. -+|.|+.|+||+ +|| |+|+....+.. +.+++|- |.||..|
T Consensus 285 ------dGa~~v~l~---~~--~~~~vl~ksDGt------------~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~h 341 (576)
T PLN02286 285 ------DGARVIFVE---GF--DIPLIVVKSDGG------------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQH 341 (576)
T ss_pred ------CCceEeecc---CC--CCceEEEECCCc------------hhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHH
Confidence 112333222 11 158999999988 555 77777776665 5676654 9999999
Q ss_pred hHHHHHHHHHhCCC-c-----ceEeeeeeee-cccccccchh-----hhhhhhcCc------------cCCCCCCCcchH
Q 043341 455 NAQYYRIQEDLGVR-K-----VHIYEFSRLN-MVYTLLSKRK-----LLWFVQNGK------------VDGWDDPRFPTV 510 (758)
Q Consensus 455 ~~~~~~l~~alg~~-~-----p~~~~~~~l~-~~~~klSKR~-----~~~li~~g~------------~~gwddpr~~tl 510 (758)
-.+...++++||+. . ..+..|+++. ..|++||||+ +++++++.. .+++++.....
T Consensus 342 f~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~- 420 (576)
T PLN02286 342 FDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ- 420 (576)
T ss_pred HHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH-
Confidence 99999999999975 2 3345567775 5677999998 455555311 01121111111
Q ss_pred HHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH---HhhccccCCcchhhh
Q 043341 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN---KKIIDPVCPRHTAVI 563 (758)
Q Consensus 511 ~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n---~~~l~~~~~r~~~v~ 563 (758)
..+-+...|+|++++++ ...++.+|||+++.+++ .-||+-.--|...++
T Consensus 421 ---~a~~vg~~Airy~~L~~-~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIl 472 (576)
T PLN02286 421 ---AAEAVGYGAVKYADLKN-NRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSII 472 (576)
T ss_pred ---HHHHhhhhhhhhhhhhc-CCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence 11125678999999887 77889999999977763 234444333433344
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=174.66 Aligned_cols=293 Identities=14% Similarity=0.164 Sum_probs=172.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCC-------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~L 311 (758)
+||--+|+|||.+||||+|+.+..+.+|| ++...|+..+||.+ +....+++.+.|.++++.|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999999888887 33445666667654 3344557889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCchHHHHHHhcCCCCCcCC------------------
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPREQMQKERMDGIESKCR------------------ 364 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~~~~~~~~~r------------------ 364 (758)
||.+|..+++++ +.+.+++++++|.++|++|. |.....-+.+....|.-..|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 999997666555 88889999999999999992 211111111110011100011
Q ss_pred -----------CCCHHH--------HHHHHHHHhcCccCCceeeE----EeeecC-CCCCCCCCCcEEEEeCC-CCCcc-
Q 043341 365 -----------NNSIEE--------NMKLWKEMIAGSERGLECCL----RGKLDM-QDPNKSLRDPVYYRCNP-IPHHR- 418 (758)
Q Consensus 365 -----------~~~~~~--------~~~~~~~~~~g~~~~~~~~~----R~k~~~-~~~~~~~~D~vl~R~~~-~~~~~- 418 (758)
+.+++- .+..+++.........+... +++.-. .--...+.|+-|-|... -++|.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP 241 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVP 241 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCC
Confidence 111110 00111111110000000000 000000 00012367888887544 22221
Q ss_pred -cCC----cc-ccccccccccc-cc-------------ccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeee
Q 043341 419 -IGS----KY-KVYPTYDFACP-FV-------------DAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFS 476 (758)
Q Consensus 419 -~~~----~~-~~~PtY~~a~~-vd-------------D~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~ 476 (758)
+.+ .| +.-..| +++. .. |....+.|++ |.|.. .|+-.+..++.++|++.| .++.|+
T Consensus 242 ~~~~~~~yvW~da~~~y-~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~-G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g 319 (530)
T TIGR00398 242 NDPNKVVYVWFDALIGY-ISSLGILSGDTEDWKKWWNNDEDAELIHFI-GKDIVRFHTIYWPAMLMGLGLPLPTQVFSHG 319 (530)
T ss_pred CCCCcEEEEeecchHHh-HhhhccccCChhhHHHhCCCCCCceEEEEE-ecccchhHHHHHHHHHHhCCCCCCCEEEeec
Confidence 211 11 111122 2210 00 0011123443 88876 455566677888998777 466679
Q ss_pred eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH-Hhh---c
Q 043341 477 RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN-KKI---I 552 (758)
Q Consensus 477 ~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n-~~~---l 552 (758)
++.++|.|||||+++ ..++.++.++ ++++++|.|++..+...++.+|+++.+.... +.. |
T Consensus 320 ~v~~~g~KmSKS~Gn---------------~i~~~d~i~~-~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l 383 (530)
T TIGR00398 320 YLTVEGGKMSKSLGN---------------VVDPSDLLAR-FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKL 383 (530)
T ss_pred cEEECCceecccCCc---------------eecHHHHHHH-cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999964 3477888888 9999999999988778899999999987764 433 3
Q ss_pred cccCCcch
Q 043341 553 DPVCPRHT 560 (758)
Q Consensus 553 ~~~~~r~~ 560 (758)
.....|..
T Consensus 384 ~n~~~r~~ 391 (530)
T TIGR00398 384 GNLLNRTL 391 (530)
T ss_pred HHHHHHHH
Confidence 34444543
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=160.22 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=150.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||.+||||+|+.++.+.++| ++...|+..+||.+. +...+.+.+.|.++++.|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 56667899999999999999999888888 344566667777753 334557889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCch----------------HHHHHHhcCCCCCcCCC-
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPR----------------EQMQKERMDGIESKCRN- 365 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~----------------e~~~~~~~~~~~~~~r~- 365 (758)
||.+|..+++++ +.+.+.+++++|.++|.+|. |..+. +.+++.-..-+ .....
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~-~~~~~~ 161 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWL-EKNPDF 161 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHH-HhCCcc
Confidence 999997777666 77789999999999999993 21111 11111000000 00000
Q ss_pred CCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeC-CCCCcccCCc------c----------ccccc
Q 043341 366 NSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCN-PIPHHRIGSK------Y----------KVYPT 428 (758)
Q Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~-~~~~~~~~~~------~----------~~~Pt 428 (758)
.-++...+...++.+. .++|+.+-|.. .-++|..+++ | .+++.
T Consensus 162 ~~p~~~~~~~~~~l~~--------------------~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~ 221 (319)
T cd00814 162 IWPENARNEVLSWLKE--------------------GLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYN 221 (319)
T ss_pred CCCHHHHHHHHHHHhC--------------------CCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHccccc
Confidence 0001111111111111 13333333322 1111110110 2 11222
Q ss_pred cccccc--ccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhhhhhhhcCccCCCCC
Q 043341 429 YDFACP--FVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD 504 (758)
Q Consensus 429 Y~~a~~--vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwdd 504 (758)
++-.+. ..+..-...|++ |.|.. .|+.....++.++|++.| .+..++++.++|+|||||+++
T Consensus 222 ~~~~~~~~~~~~~~~~v~~~-G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn------------- 287 (319)
T cd00814 222 EEWGNSWWWKDGWPELVHFI-GKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGN------------- 287 (319)
T ss_pred ccccchhhhhcCCCceEEEE-eechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCc-------------
Confidence 221110 001112234554 88877 455555567788898766 455558999999999999964
Q ss_pred CCcchHHHHHHcCCCHHHHHHHHHHhccccccccc
Q 043341 505 PRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLM 539 (758)
Q Consensus 505 pr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~ 539 (758)
..++.++++. ++++++|.|++..+...++.+|
T Consensus 288 --~i~~~~~l~~-~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 288 --VVDPDDLLER-YGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred --ccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCC
Confidence 3467788888 8999999999988766666554
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=160.64 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=155.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc--------------------------cchH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA--------------------------KESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~--------------------------r~~~ 298 (758)
+++==+|+|||.+||||+++.++.+.++| ++...|+..+|+.+.. ...+
T Consensus 3 ~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T cd00668 3 YVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE 82 (312)
T ss_pred EEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 34455799999999999999888777776 4555566666665421 1123
Q ss_pred HHHHHHHHHHHHhCCCCC--Ccccc--cCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHH
Q 043341 299 EFVDNLLKDIETLGIKYE--TVTYT--SDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKL 374 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi~~d--~~~~~--S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~ 374 (758)
++.+.|+++|+.|||..| ..+++ .++.+.+.+++++|.++|++|...... +.. ...+-+.+ +-.-++
T Consensus 83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~ 153 (312)
T cd00668 83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKL 153 (312)
T ss_pred HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHH
Confidence 577999999999999877 55444 347788999999999999999633211 000 00000000 000011
Q ss_pred HHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccc---------cccc-----
Q 043341 375 WKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV---------DAKE----- 440 (758)
Q Consensus 375 ~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vd---------D~~~----- 440 (758)
.+.+.++... +. +.|.....--.+..|+.|.|.. .||. +.|+|++-|=+| .+..
T Consensus 154 ~~~~~~~~~~--p~--~~~~~~~~~l~~~~d~~isR~~-----~WG~---~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~ 221 (312)
T cd00668 154 LKALRRGKIV--PE--HVKNRMEAWLESLLDWAISRQR-----YWGT---PLPEDVFDVWFDSGIGPLGSLGYPEEKEWF 221 (312)
T ss_pred HHHHhcCCcC--Ch--HHHHHHHHHHhCCCCeEEeccC-----CCCC---cCCcccccchhhccHHHHHHcCCCccchhh
Confidence 1222222100 00 0000000000122399998853 2444 457888877211 1111
Q ss_pred ----CccEEeeCCCCC-CchHHHHHHHHHhCCC-cc-eEeeeeeeeccc-ccccchhhhhhhhcCccCCCCCCCcchHHH
Q 043341 441 ----GITHALRSSEYH-DRNAQYYRIQEDLGVR-KV-HIYEFSRLNMVY-TLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512 (758)
Q Consensus 441 ----githvirg~d~~-~~~~~~~~l~~alg~~-~p-~~~~~~~l~~~~-~klSKR~~~~li~~g~~~gwddpr~~tl~~ 512 (758)
..+--+-|.|+. .|......+..+++.. .| .+|.|+++.+.+ +|||||+++ ..++.+
T Consensus 222 ~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d 286 (312)
T cd00668 222 KDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSD 286 (312)
T ss_pred hhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHH
Confidence 122223388988 8888888888888754 33 677889999998 999999974 447888
Q ss_pred HHHcCCCHHHHHHHHHHhcccccccc
Q 043341 513 IVRRGLLVEALIQFILEQGASKNLNL 538 (758)
Q Consensus 513 l~~~G~~~eal~~~~~~~g~~~~~~~ 538 (758)
+.+. ++++++|.|++..+...++..
T Consensus 287 ~~~~-~~~da~R~~l~~~~~~~~d~~ 311 (312)
T cd00668 287 VVEK-YGADALRYYLTSLAPYGDDIR 311 (312)
T ss_pred HHHH-cCcHHHHHHHHhcCCccCCCC
Confidence 8888 999999999988755555443
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=164.62 Aligned_cols=291 Identities=14% Similarity=0.168 Sum_probs=185.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+||==-|.|||.+||||+++.|..+.+|| +..|.=++=+..|| |+...+++.+.+++++++
T Consensus 7 ~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~ 86 (558)
T COG0143 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKA 86 (558)
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999999999999998 45577677776655 555566788999999999
Q ss_pred hCCCCCCccccc--CCHHHHHHHHHHHHHhCceec-------cCCchHHHHHHhcCCCCCcCC--------------CCC
Q 043341 311 LGIKYETVTYTS--DYFPDLMEMAENLIRQGKAYV-------DDTPREQMQKERMDGIESKCR--------------NNS 367 (758)
Q Consensus 311 LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~~~~~~~~~r--------------~~~ 367 (758)
|||.+|.+.+++ +|.+..+++.++|.++|.+|. |..+..-+-+..-.|....|+ ...
T Consensus 87 l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~ 166 (558)
T COG0143 87 LNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLD 166 (558)
T ss_pred hCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCC
Confidence 999999766654 477889999999999999982 221111111111111111111 011
Q ss_pred HHH-----------------------HHHHHHHHhcCccCCce----eeEEeeecCCCCCCCCCCcEEEEeCCCCCcccC
Q 043341 368 IEE-----------------------NMKLWKEMIAGSERGLE----CCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIG 420 (758)
Q Consensus 368 ~~~-----------------------~~~~~~~~~~g~~~~~~----~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~ 420 (758)
+.+ .|..|+.+.....+..+ ..-|.+.-...-...++|+.|-|.+. .||
T Consensus 167 P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~----~WG 242 (558)
T COG0143 167 PTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDL----DWG 242 (558)
T ss_pred chhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCC----CCC
Confidence 111 01112222111111100 00000000000124578999988542 344
Q ss_pred Ccccccc-----cc-----c----c--cc------c-----ccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-
Q 043341 421 SKYKVYP-----TY-----D----F--AC------P-----FVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH- 471 (758)
Q Consensus 421 ~~~~~~P-----tY-----~----~--a~------~-----vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~- 471 (758)
-++.++| .| . + .| . -+| .-.+-|+| |.|-. .|+-..-.++.+.|.+.|.
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfI-GKDii~FHav~wPamL~~~~~~lP~~ 320 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFI-GKDIIRFHAVYWPAMLMAAGLPLPTR 320 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEe-ccccCcchhhHHHHHHHhCCCCCCCE
Confidence 4443332 22 0 0 00 0 012 33345777 88877 7888888899999999884
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
+..+++|.++|+|||||+++ ......+.++ +++|.+|+|++....-.++.+|+|+.+....+..
T Consensus 321 i~ahg~l~~~G~KmSKSrG~---------------~V~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~d 384 (558)
T COG0143 321 IFAHGFLTLEGQKMSKSRGN---------------VVDPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNAD 384 (558)
T ss_pred EEeeeeEEECCccccccCCc---------------EEeHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 55668999999999999953 1234556666 9999999999998888899999999998886655
Q ss_pred cc----ccCCcchh
Q 043341 552 ID----PVCPRHTA 561 (758)
Q Consensus 552 l~----~~~~r~~~ 561 (758)
|. ..+.|.+.
T Consensus 385 L~n~lgNl~~R~~~ 398 (558)
T COG0143 385 LANKLGNLANRTLG 398 (558)
T ss_pred HHHHHHHHHHHHHH
Confidence 55 56667665
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=173.73 Aligned_cols=282 Identities=15% Similarity=0.082 Sum_probs=167.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~ 310 (758)
-++|==.|+|||++||||+++.+..+.++| +++..|+.-.||.+. +...+.+.+.|.++|++
T Consensus 6 ~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~ 85 (648)
T PRK12267 6 FYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKK 85 (648)
T ss_pred EEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999998888 334455555565543 33455788999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHh-cCCCCCcCCCCCHH----H----HH
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKER-MDGIESKCRNNSIE----E----NM 372 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~-~~~~~~~~r~~~~~----~----~~ 372 (758)
|||.+|.++++|+ +.+..+++..+|.++|++| .|..+..-+.... ..+.-|++.+.+++ + .+
T Consensus 86 lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l 165 (648)
T PRK12267 86 LDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRM 165 (648)
T ss_pred cCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEc
Confidence 9999998888887 7778899999999999999 2321111111111 11111222222221 0 01
Q ss_pred HHHHHHhcCccCCceeeE-----EeeecCCCCCCCCCCcEEEEeCC-CCCcccCCccccccccc------cccc-c--c-
Q 043341 373 KLWKEMIAGSERGLECCL-----RGKLDMQDPNKSLRDPVYYRCNP-IPHHRIGSKYKVYPTYD------FACP-F--V- 436 (758)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~-----R~k~~~~~~~~~~~D~vl~R~~~-~~~~~~~~~~~~~PtY~------~a~~-v--d- 436 (758)
..|++.........+..+ +-.+-..--+..++|+.|-|... -+.|.-+++-....+|- +++. . +
T Consensus 166 ~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~ 245 (648)
T PRK12267 166 SKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDD 245 (648)
T ss_pred HHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCC
Confidence 112111111111000000 00000001122367888888421 11111111101111110 1110 0 0
Q ss_pred --c---cccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 437 --D---AKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 437 --D---~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
+ +--...|+ -|.|.+ .|+-.+-.++.++|++.|. +.-|+++..+|+|||||+++ ..+
T Consensus 246 ~~~~~~~wp~~~~~-~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN---------------~i~ 309 (648)
T PRK12267 246 DELFKKFWPADVHL-VGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGN---------------VVD 309 (648)
T ss_pred chHHHhhcccceEE-EeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCc---------------ccC
Confidence 0 00001233 388876 4566666777788988874 55679999999999999964 336
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
..++.++ |++|++|.|++..+...++.+|+++.+...
T Consensus 310 p~d~l~~-ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~ 346 (648)
T PRK12267 310 PEELVDR-YGLDALRYYLLREVPFGSDGDFSPEALVER 346 (648)
T ss_pred HHHHHHH-cCCcHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 6777777 999999999998878889999999997553
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-14 Score=167.20 Aligned_cols=279 Identities=14% Similarity=0.149 Sum_probs=164.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||.+||||+++.++.+.+||- ..|.-++-+..|| |....++|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 677778999999999999999999999882 3344344433333 3445567899999999999
Q ss_pred CCCCCCccccc--CCHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCC------------CCC---------
Q 043341 312 GIKYETVTYTS--DYFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDG------------IES--------- 361 (758)
Q Consensus 312 Gi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~------------~~~--------- 361 (758)
||.+|.+++++ +|.+..++++.+|+++|.+| .|..+...+.+..-.| ..|
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~ 164 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSP 164 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCCh
Confidence 99999776665 48899999999999999999 2221111111110011 000
Q ss_pred ------cC--CCCCHH----H----HHHHHHHHhcCccCC---ceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCC
Q 043341 362 ------KC--RNNSIE----E----NMKLWKEMIAGSERG---LECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGS 421 (758)
Q Consensus 362 ------~~--r~~~~~----~----~~~~~~~~~~g~~~~---~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~ 421 (758)
.| ...+++ + .+..|++........ .+..++-.+ ..--...+.|+.|-|...- +.|.-|+
T Consensus 165 ~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~l~d~~ISR~~~W~GipvP~~ 243 (673)
T PRK00133 165 TELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKM-KEWLEEGLQDWDISRDAPYFGFEIPGA 243 (673)
T ss_pred HhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhCCCcccceeeeCCccceECCCC
Confidence 00 011111 0 001111111100000 000000000 0001135679888885422 2222122
Q ss_pred c------c-cccccccccc-cc-cc--------cc-----cCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeee
Q 043341 422 K------Y-KVYPTYDFAC-PF-VD--------AK-----EGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSR 477 (758)
Q Consensus 422 ~------~-~~~PtY~~a~-~v-dD--------~~-----~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~ 477 (758)
. | +..+.|-.+. -. ++ .- -.+.|++ |.|-. .|+-..-.++.++|++.| .+..|++
T Consensus 244 ~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~wpa~l~a~g~~lP~~v~~hg~ 322 (673)
T PRK00133 244 PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGF 322 (673)
T ss_pred CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecchhHHHHHHHHHHHhCCCCCCCEEeeecc
Confidence 1 1 2222331111 01 10 00 1134554 88866 455556677788999877 4555689
Q ss_pred eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc-ccccccHHHHHH
Q 043341 478 LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK-NLNLMEWDKLWT 546 (758)
Q Consensus 478 l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~-~~~~~d~~~l~~ 546 (758)
+.++|+|||||+++ ..+..++.++ ++++++|.|++..+... .+.+|+|+.+..
T Consensus 323 v~~~G~KMSKS~GN---------------vV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 323 LTVEGAKMSKSRGT---------------FIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQ 376 (673)
T ss_pred EEecCCcccccCCc---------------ccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHH
Confidence 99999999999974 3467788888 99999999999877666 789999998654
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=167.74 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=170.3
Q ss_pred CeeeeccCCCCCCCccchhhHHH-HHHHHHHcc--cCceEEEEecCCC----------------cccchHHHHHHHHHHH
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAA-LLNQYFAQR--YQGQLIVRFDDTN----------------PAKESNEFVDNLLKDI 308 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~a-l~n~~~Ar~--~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl 308 (758)
.-+||==.|+|||.+||||+++. +..+.+||. ..|.-++-+..|| |+...+++.+.+.+.+
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999975 667888883 4466666665555 3444556778889999
Q ss_pred HHhCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------cc-CCchHHHHHHhcCCC-------------------
Q 043341 309 ETLGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VD-DTPREQMQKERMDGI------------------- 359 (758)
Q Consensus 309 ~~LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~-~~~~e~~~~~~~~~~------------------- 359 (758)
++|||.+|.++++++ |.+..+++..+|.++|++| .| .|.. .+.+..-.|.
T Consensus 98 ~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~-fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~C 176 (801)
T PLN02610 98 DWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQK-FLADRLVEGTCPTEGCNYDSARGDQCEKC 176 (801)
T ss_pred HHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCC-CcchHHhcCcCCccccCccccccchhhhc
Confidence 999999998776664 6678899999999999998 23 2221 1111100110
Q ss_pred ----------CCcC--CCCCHH----H----HHHHHHHHhcCccCCc--eeeEEeee-cC--CCCCCCCCCcEEEEeCCC
Q 043341 360 ----------ESKC--RNNSIE----E----NMKLWKEMIAGSERGL--ECCLRGKL-DM--QDPNKSLRDPVYYRCNPI 414 (758)
Q Consensus 360 ----------~~~~--r~~~~~----~----~~~~~~~~~~g~~~~~--~~~~R~k~-~~--~~~~~~~~D~vl~R~~~~ 414 (758)
+..| ...+++ + .|..|++......... ...+|-.. .. ..-...++|+.+-|...-
T Consensus 177 g~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~W 256 (801)
T PLN02610 177 GKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKW 256 (801)
T ss_pred cccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCC
Confidence 0011 111111 0 0111222111111000 00111100 00 011235788888884211
Q ss_pred CCcc--cCCc------c-ccccccccccc------cccc-----ccCccEEeeCCCCC-CchHHHHHHHHHhCCC--cc-
Q 043341 415 PHHR--IGSK------Y-KVYPTYDFACP------FVDA-----KEGITHALRSSEYH-DRNAQYYRIQEDLGVR--KV- 470 (758)
Q Consensus 415 ~~~~--~~~~------~-~~~PtY~~a~~------vdD~-----~~githvirg~d~~-~~~~~~~~l~~alg~~--~p- 470 (758)
+.|. .|.+ | +....| +++. ..++ .-.+.|+| |.|-. .|+-..-.++.++|.+ .|
T Consensus 257 GipvP~~~~~~~v~YVWfDAl~~Y-is~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~ 334 (801)
T PLN02610 257 GVPVPLEKYKDKVFYVWFDAPIGY-VSITACYTPEWEKWWKNPENVELYQFM-GKDNVPFHTVMFPSTLLGTGENWTMMK 334 (801)
T ss_pred cccCCCCCCCCcEEEEehhhHHHH-HHHHhhhhhHHHHhcCCcccceEEEEE-eeecchhHHHHHHHHHHhCCCCcCCCC
Confidence 1111 1101 1 111122 1111 0111 11235776 88876 6778888888898854 56
Q ss_pred eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.+..+++++++|+|||||+++. .....+.+++|++|++|+|++..+...++.+|+|+.+....+
T Consensus 335 ~i~~~g~l~~eG~KMSKS~GNv---------------V~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~N 398 (801)
T PLN02610 335 TISVTEYLNYEGGKFSKSKGVG---------------VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLN 398 (801)
T ss_pred EEEeccCEecCCceecCcCCcc---------------cCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHH
Confidence 4556689999999999999642 245667777799999999999998889999999988766633
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=157.94 Aligned_cols=185 Identities=22% Similarity=0.291 Sum_probs=117.3
Q ss_pred eeeecc-CCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC-------------------------------
Q 043341 249 KVRLRF-APEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT------------------------------- 291 (758)
Q Consensus 249 ~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt------------------------------- 291 (758)
+|+.=| +|||||+|||||+|++++++.+|| .+.|.-|.|. .|.
T Consensus 21 kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 100 (354)
T PF00750_consen 21 KVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDL 100 (354)
T ss_dssp EEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHH
T ss_pred EEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhh
Confidence 454444 799999999999999999999999 4557767765 111
Q ss_pred ----------Ccc------c---------------------chHH-HHHHHHHHHHHhCCCCCCcccccC--CHHHHHHH
Q 043341 292 ----------NPA------K---------------------ESNE-FVDNLLKDIETLGIKYETVTYTSD--YFPDLMEM 331 (758)
Q Consensus 292 ----------d~~------r---------------------~~~~-~~~~i~~dl~~LGi~~d~~~~~S~--~~~~~~~~ 331 (758)
++. . .... +.+.++++|++||+.+|...+.|+ +-+.+.++
T Consensus 101 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~~v~~v 180 (354)
T PF00750_consen 101 YVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSGKVDEV 180 (354)
T ss_dssp HHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTTHHHHH
T ss_pred hhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhhHHHHH
Confidence 000 0 0012 446777888888888886665555 33457788
Q ss_pred HHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEe
Q 043341 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC 411 (758)
Q Consensus 332 ~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~ 411 (758)
+++|.++|.+|.. ++++.++++ ..+...|+||.|+
T Consensus 181 l~~L~e~g~~~~~------------------------------------------dGa~~i~~~---~~g~~k~~Vl~ks 215 (354)
T PF00750_consen 181 LERLKEKGLLYES------------------------------------------DGALWIDLT---KFGDDKDRVLRKS 215 (354)
T ss_dssp HHHHHCTTTEEEE------------------------------------------TTEEEEEGC---CTSTSS-EEEEET
T ss_pred HHHHHhCCcEEec------------------------------------------CCcEEEech---hcCCCCcceEEcC
Confidence 8888888888721 235666653 2355678899999
Q ss_pred CCCCCcccCCcccccccc---ccccccccc-ccCccEEee--CCCCCCchHHHHHHHHHhCCCc--ce--Eeeeeee-ec
Q 043341 412 NPIPHHRIGSKYKVYPTY---DFACPFVDA-KEGITHALR--SSEYHDRNAQYYRIQEDLGVRK--VH--IYEFSRL-NM 480 (758)
Q Consensus 412 ~~~~~~~~~~~~~~~PtY---~~a~~vdD~-~~githvir--g~d~~~~~~~~~~l~~alg~~~--p~--~~~~~~l-~~ 480 (758)
||+ +|| |+|.+.+-+ ..+.+.+|- |.+|..|-.+...++++||+.. .. +..|+.+ ..
T Consensus 216 DGt------------~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~ 283 (354)
T PF00750_consen 216 DGT------------STYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLK 283 (354)
T ss_dssp TSE------------B-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEET
T ss_pred CCc------------eEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcC
Confidence 977 666 677776655 455665543 9999999999999999999831 22 2345544 34
Q ss_pred ccc-cccchhh
Q 043341 481 VYT-LLSKRKL 490 (758)
Q Consensus 481 ~~~-klSKR~~ 490 (758)
+|+ +||+|++
T Consensus 284 ~gk~~mstR~G 294 (354)
T PF00750_consen 284 DGKVKMSTRKG 294 (354)
T ss_dssp TBEESS-TTTT
T ss_pred CCCccccCCCC
Confidence 455 7999994
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=140.09 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=113.4
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhC
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLG 312 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LG 312 (758)
+.=..|+|+|++||||+|+.++.+.+|| .+...|+..+||.+.+.. .+++.+.+.++++.||
T Consensus 23 ~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~ 102 (213)
T cd00672 23 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALN 102 (213)
T ss_pred EEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3445799999999999999999998888 566789999999985422 1233344444444444
Q ss_pred CCC-CCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 313 IKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 313 i~~-d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
|.+ |.++++
T Consensus 103 i~~~d~~~rt---------------------------------------------------------------------- 112 (213)
T cd00672 103 VLPPDVVPRV---------------------------------------------------------------------- 112 (213)
T ss_pred CCCCCcceee----------------------------------------------------------------------
Confidence 443 222222
Q ss_pred eeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccc--ccccC-ccEEeeCCCCC-CchHHHHHHHHHh-C
Q 043341 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV--DAKEG-ITHALRSSEYH-DRNAQYYRIQEDL-G 466 (758)
Q Consensus 392 ~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vd--D~~~g-ithvirg~d~~-~~~~~~~~l~~al-g 466 (758)
||++|++. .++.. ++--.=|.|++ .|......+..++ |
T Consensus 113 -------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g 155 (213)
T cd00672 113 -------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATG 155 (213)
T ss_pred -------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhC
Confidence 66665531 22221 22222366766 5666666666664 5
Q ss_pred CCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccccccccc
Q 043341 467 VRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540 (758)
Q Consensus 467 ~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d 540 (758)
-+.+.+|.+ +++.+.|+|||||+++ ..++.++.+. ++++++|.|++.. ..+++.+||
T Consensus 156 ~~~~~~~~h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~-~~~~~l~f~ 213 (213)
T cd00672 156 KPFARYWLHTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSS-HYRSPLDFS 213 (213)
T ss_pred CCCCcEEEEEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhC-CcCCCCCCC
Confidence 556677877 7899999999999973 4588898886 9999999999886 677777765
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=137.71 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=119.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|.|| +++.|..+++||++++++|++++...+ |.||+|+. +..+|.++.-|+.|+.+++
T Consensus 27 ~vLy--hhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~-g~~II~d~tqIIdYvErtf~ 103 (325)
T KOG4420|consen 27 LVLY--HHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH-GDNIISDYTQIIDYVERTFT 103 (325)
T ss_pred ceee--ecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec-CCeecccHHHHHHHHHHhhc
Confidence 6888 899999999999999999999887543 99999987 7889999999999999988
Q ss_pred ---CCCCC-CHHHHHHHHHHHH---------hcccc-CCh----------------------------------------
Q 043341 100 ---NFYGQ-NAYEAGEIDEWLD---------YTPVF-SSG---------------------------------------- 125 (758)
Q Consensus 100 ---~L~p~-~~~era~v~~wl~---------~~~~~-l~~---------------------------------------- 125 (758)
.|.|. +..+..++.++-. |..++ +++
T Consensus 104 ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 104 GERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred ccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 56661 2222222222111 11111 000
Q ss_pred ------------------------HHHHHHHHHHHHhccc----CCcccCCCCCHhHHHHHHHHhhhhcccccccc--cc
Q 043341 126 ------------------------SEFENACTYVDKYLER----RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK--SK 175 (758)
Q Consensus 126 ------------------------~~l~~~L~~Le~~L~~----~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~--~~ 175 (758)
..+...|.++|+.|.. .+||+|+.+|+||+.+.+.|+++......-.. ..
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~g 263 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccC
Confidence 4556667777888877 58999999999999999999997332222111 34
Q ss_pred cChhHHHHHHHHHhhccchHHHHHHhhh
Q 043341 176 KYQNLVRWFNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 176 ~~P~L~rW~~~i~~~~~p~~~~~l~~~~ 203 (758)
..|||..|+.+++++ ++|+++++.+.
T Consensus 264 srpnle~Yf~rvrrR--~sf~kvlg~~f 289 (325)
T KOG4420|consen 264 SRPNLESYFERVRRR--FSFRKVLGDIF 289 (325)
T ss_pred CCccHHHHHHHHHhh--hHHHHhhhhHH
Confidence 689999999999999 99999999864
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=155.39 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=165.4
Q ss_pred eeeccCCCCCCCccchhhHHH-HHHHHHHc-----ccCceEEEEecCCCcc-------------cchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAA-LLNQYFAQ-----RYQGQLIVRFDDTNPA-------------KESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~a-l~n~~~Ar-----~~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dl~~ 310 (758)
+||==+|+|||.|||||+++. ++.+.++| +++..|+..+||.+.+ ....++.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 677778999999999999998 88888877 3445666666766532 2345788999999999
Q ss_pred hCCCCCCccccc--CCHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCCCCCc-CC----------------
Q 043341 311 LGIKYETVTYTS--DYFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDGIESK-CR---------------- 364 (758)
Q Consensus 311 LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~~~~~-~r---------------- 364 (758)
|||.+|..++++ ++.+..+++..+|.++|++| .|.....-+.+....| .|+ |.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-~cp~c~~~~~~G~~ce~cg~~~ 164 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-TCPYCGYEGARGDQCDNCGALL 164 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec-cCCCCCCcccCCchhhhccccC
Confidence 999999877777 68999999999999999999 2221111111100011 011 11
Q ss_pred -------------CCCHH----H----HHHHHHHHhcCccCC---ceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-
Q 043341 365 -------------NNSIE----E----NMKLWKEMIAGSERG---LECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI- 419 (758)
Q Consensus 365 -------------~~~~~----~----~~~~~~~~~~g~~~~---~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~- 419 (758)
+..++ + .+..|++........ .+...+-++. .--...++|+.+-|...-++|.-
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~-~~l~~~l~Dw~ISR~~~WGipiP~ 243 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTL-NWLKEGLKPRAITRDLDWGIPVPW 243 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHH-HHHhCCCCCcCceeeCCCCeeCCC
Confidence 00010 0 000011100000000 0000000000 00112577999988654222221
Q ss_pred -CCcc-cccc------cccccc------------cccccc--cCc--cEEeeCCCCC-CchHHHHHHHHHhC--CCcc-e
Q 043341 420 -GSKY-KVYP------TYDFAC------------PFVDAK--EGI--THALRSSEYH-DRNAQYYRIQEDLG--VRKV-H 471 (758)
Q Consensus 420 -~~~~-~~~P------tY~~a~------------~vdD~~--~gi--thvirg~d~~-~~~~~~~~l~~alg--~~~p-~ 471 (758)
++.- ..|+ .| +++ ..++.- .+. .|++ |.|.+ .|...+..++.+.| +..| .
T Consensus 244 ~~~~~~~iyvW~da~~~y-~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~-G~D~~~Fh~~~~p~~l~~~~~~~~~P~~ 321 (556)
T PRK12268 244 PGFEGKVFYVWFDAVIGY-ISASKEWAERTGDPEAWKEFWLDPETKSYYFI-GKDNIPFHSIIWPAMLLGSGEPLKLPDE 321 (556)
T ss_pred CCCCCcEEEEeehHhhHH-HHHHHHHHHhcCCchHHHHHhCCCCCeEEEEE-eeccCcchHHHHHHHHHhcCCCCCCCCE
Confidence 1110 1111 11 111 011111 222 2333 88876 34445556666777 5555 5
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHh
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKK 550 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~ 550 (758)
+..|+|+.++|.|||||+++ ..+..++.++ +++|++|.|++..+....+.+|+++.+... |+.
T Consensus 322 v~~~G~v~~~G~KMSKS~GN---------------~I~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~ 385 (556)
T PRK12268 322 IVSSEYLTLEGGKFSKSRGW---------------GIWVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSE 385 (556)
T ss_pred eeccCCEEECCeeeccCCCc---------------ccCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHH
Confidence 56668999999999999974 3477888888 999999999998877778899999997653 444
Q ss_pred h
Q 043341 551 I 551 (758)
Q Consensus 551 ~ 551 (758)
.
T Consensus 386 ~ 386 (556)
T PRK12268 386 L 386 (556)
T ss_pred h
Confidence 3
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=135.01 Aligned_cols=133 Identities=22% Similarity=0.171 Sum_probs=101.9
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
++.+.|+|||++||||+|++++.+.+||. ++..++..++|.+.......... |..|
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~---------- 61 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENA---------- 61 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCH----------
Confidence 46789999999999999999998888885 48999999999997665443222 1111
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRD 405 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D 405 (758)
+++. +.+.+.|++..+
T Consensus 62 -----------------------~~~~----------------~~~~~~~~~~~~------------------------- 77 (143)
T cd00802 62 -----------------------KAFV----------------ERWIERIKEDVE------------------------- 77 (143)
T ss_pred -----------------------HHHH----------------HHHHHHHHHHHH-------------------------
Confidence 1111 111111211110
Q ss_pred cEEEEeCCCCCcccCCcccccccccccccccccccCc---cEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeeecc
Q 043341 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGI---THALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMV 481 (758)
Q Consensus 406 ~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~gi---thvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~~~ 481 (758)
|++.|++++...++ |+.++|.|+..|...+.++++++|+. .|...+|++|+..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 89999999999999 99999999999999999999999876 6888888999886
Q ss_pred c-ccccchh
Q 043341 482 Y-TLLSKRK 489 (758)
Q Consensus 482 ~-~klSKR~ 489 (758)
+ +|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 5 8999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=153.53 Aligned_cols=280 Identities=18% Similarity=0.164 Sum_probs=155.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCC----------------CcccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDT----------------NPAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDt----------------d~~r~~~~~~~~i~~dl~~L 311 (758)
+||==.|.|||.|||||+.+.+..+.+||- ..|.=++-+..| +|+....++.+.|++.++.|
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345556999999999999999999999983 346555555444 35556667889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCCCC------------Cc-CCCCCHH
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDGIE------------SK-CRNNSIE 369 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~~~------------~~-~r~~~~~ 369 (758)
||.+|.+.++++ |.+..+++.++|.++|.+| .|..+..-+.+....|.- |. |. ...+
T Consensus 82 ~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG-~~~~ 160 (391)
T PF09334_consen 82 NISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCG-RPLE 160 (391)
T ss_dssp T---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTS-SBEE
T ss_pred CCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCC-CCcc
Confidence 999997776654 6677899999999999998 232221111111111100 00 11 0000
Q ss_pred --HHHHHHHHHhcCccC--CceeeEEeeecCC----------C---------------CCCCCCCcEEEEeCCCCCcccC
Q 043341 370 --ENMKLWKEMIAGSER--GLECCLRGKLDMQ----------D---------------PNKSLRDPVYYRCNPIPHHRIG 420 (758)
Q Consensus 370 --~~~~~~~~~~~g~~~--~~~~~~R~k~~~~----------~---------------~~~~~~D~vl~R~~~~~~~~~~ 420 (758)
+... ..-...|... ..+..+-|+++.. . -+..+.|+-|-|. -.||
T Consensus 161 ~~~l~~-p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~-----~~WG 234 (391)
T PF09334_consen 161 PEELIN-PVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRP-----LDWG 234 (391)
T ss_dssp CCCSEC-EEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECT-----TSSS
T ss_pred cccccC-CccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecC-----CCCc
Confidence 0000 0000000000 0011111222110 0 0123566655522 2244
Q ss_pred Ccccc------------cccccc--cccc--------------cccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce
Q 043341 421 SKYKV------------YPTYDF--ACPF--------------VDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH 471 (758)
Q Consensus 421 ~~~~~------------~PtY~~--a~~v--------------dD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~ 471 (758)
-++.+ ...|-. .... +|..-.+.|+| |.|.. .|+.....++.++|++.|.
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~ 313 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPR 313 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---S
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCC
Confidence 43311 112200 0001 22233456776 88876 6777888888899999884
Q ss_pred -EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 472 -IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 472 -~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
+.-++++.++|.|||||.++ .....+++++ +++|++|.|++..+....+++|+++.+...++.
T Consensus 314 ~i~~~~~~~~~g~K~SkS~gn---------------~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~ 377 (391)
T PF09334_consen 314 RIVVHGFLTLDGEKMSKSRGN---------------VIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNN 377 (391)
T ss_dssp EEEEE--EEETTCCEETTTTE---------------SSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHH
T ss_pred EEEeeeeEEECCeeccccCCc---------------ccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 44558999999999999853 2356777777 999999999999999999999999999887666
Q ss_pred hcc
Q 043341 551 IID 553 (758)
Q Consensus 551 ~l~ 553 (758)
.|.
T Consensus 378 ~L~ 380 (391)
T PF09334_consen 378 ELA 380 (391)
T ss_dssp CCC
T ss_pred HHH
Confidence 654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=141.34 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=70.6
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecC----CCcc--------------------------cchH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDD----TNPA--------------------------KESN 298 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieD----td~~--------------------------r~~~ 298 (758)
=||+|||.+||||||+.++.+.++| +|...|+..+|| ++.+ ...+
T Consensus 8 ~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
T cd00818 8 GPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFAL 87 (338)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHH
Confidence 3799999999999999998888887 345556666666 3321 2233
Q ss_pred HHHHHHHHHHHHhCC--CCCCcc--cccCCHHHHHHHHHHHHHhCceecc
Q 043341 299 EFVDNLLKDIETLGI--KYETVT--YTSDYFPDLMEMAENLIRQGKAYVD 344 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi--~~d~~~--~~S~~~~~~~~~~~~Li~~G~aY~~ 344 (758)
++.+.|.++|+.||+ .||..+ ..+++.+..++++.+|.++|++|..
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~ 137 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRG 137 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEecc
Confidence 677999999999999 666443 3456889999999999999999954
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=139.10 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=71.2
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-------------chHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK-------------ESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r-------------~~~~~~~~i~~dl~~L 311 (758)
++|==+|+|||.+||||+|+.++.+.+|| ++...|+..+||.+... ..+++.+.+.++|+.|
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45666899999999999999998888887 45567777788886432 2457889999999999
Q ss_pred CCCCCC--cccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYET--VTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d~--~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+.+|- .+.+++ +.+..+++..+|.++|.+|
T Consensus 83 gi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 83 GFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred ccceecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999882 323322 3445566667999999999
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=141.95 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=69.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCCcc--------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTNPA--------------------------------K 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd~~--------------------------------r 295 (758)
++|==+|+|||.|||||+++.++.+.+||- ..|.-++.+..+|.. .
T Consensus 4 ~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T cd00817 4 VIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE 83 (382)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence 455568999999999999999999999983 345555554333320 1
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...++.+.+.++++.||+..| ..+++++ +.+..+.+..+|.++|++|
T Consensus 84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 134 (382)
T cd00817 84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIY 134 (382)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 234577899999999999765 5555544 6677889999999999999
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=135.80 Aligned_cols=286 Identities=15% Similarity=0.107 Sum_probs=172.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+.|-=--.||-..||||++++++.+.+|| ...|.-+.-.+.|| |....+...+++..-.+-+
T Consensus 42 ~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~ 121 (578)
T KOG0436|consen 42 VLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDA 121 (578)
T ss_pred EEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHh
Confidence 33433346888899999999999999998 46688777677776 3223333445555556678
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHH---hcCCCCCc---------CCCCCHHH
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKE---RMDGIESK---------CRNNSIEE 370 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~---~~~~~~~~---------~r~~~~~~ 370 (758)
||.++.+.++++ |....+++-..+.++|.+| .|-.+.....+. +..+-+++ |--++.+.
T Consensus 122 gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~N 201 (578)
T KOG0436|consen 122 GIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDN 201 (578)
T ss_pred CcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccc
Confidence 999998888776 7788999999999999998 232222222221 12211111 10001000
Q ss_pred ---HHHHHHHHhcCccCCceeeE----EeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccc-----cc-----cccc
Q 043341 371 ---NMKLWKEMIAGSERGLECCL----RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP-----TY-----DFAC 433 (758)
Q Consensus 371 ---~~~~~~~~~~g~~~~~~~~~----R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~P-----tY-----~~a~ 433 (758)
.|..|++.......+.+..+ +-..-..-....+.|+-+-|.. .+-.||-+..|-+ .| +|-.
T Consensus 202 Y~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRps--arl~WGIPvP~ddsQtIYVWfDAL~nYiS 279 (578)
T KOG0436|consen 202 YFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPS--ARLDWGIPVPGDDSQTIYVWFDALLNYIS 279 (578)
T ss_pred eeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChh--hhcccCCCCCCCCcceEEEeHHHHhhHHH
Confidence 12223222211111100000 0000000012346788777743 2223433221111 11 0111
Q ss_pred ccccc----c------c---CccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCc
Q 043341 434 PFVDA----K------E---GITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGK 498 (758)
Q Consensus 434 ~vdD~----~------~---githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~ 498 (758)
+|-.- - . .-.||| |.|.+ .|+...-.++-+.|++.|. +..|+|...+|.||||+.++..
T Consensus 280 vig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv----- 353 (578)
T KOG0436|consen 280 VIGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----- 353 (578)
T ss_pred hhcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc-----
Confidence 11000 0 0 023777 88876 6777777888889999884 6667999999999999986533
Q ss_pred cCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 499 ~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
||+ .|.++ |+++++|+|++..|.-.++.+|+.++|....+.+|..
T Consensus 354 -----dP~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 354 -----DPF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred -----CHH-----HHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 553 57777 9999999999999999999999999999998888763
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-11 Score=128.69 Aligned_cols=235 Identities=18% Similarity=0.208 Sum_probs=150.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc---------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE--------------------------- 296 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~--------------------------- 296 (758)
+++.-=+++|||.+||||+|..+..+.++| .+...|+.-.||.|+-|.
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 355556778999999999999988887777 566788888899876222
Q ss_pred ---hHHHHHHHHHHHHHhCCCCCCcccccC-CHH-HHHHHHH-HHHHhCceeccCCchHHHHHHhcC----CC------C
Q 043341 297 ---SNEFVDNLLKDIETLGIKYETVTYTSD-YFP-DLMEMAE-NLIRQGKAYVDDTPREQMQKERMD----GI------E 360 (758)
Q Consensus 297 ---~~~~~~~i~~dl~~LGi~~d~~~~~S~-~~~-~~~~~~~-~Li~~G~aY~~~~~~e~~~~~~~~----~~------~ 360 (758)
.+.+.+.+.+.|+.|||++| .+++++ |.. .|.+.+. .|.+.+.+. +.+.+.+.. .| .
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d-~~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE-FISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee-eeecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 33567888999999999998 444444 222 3444333 444455543 333333321 11 1
Q ss_pred CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-----CC---cc-ccccc-cc
Q 043341 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI-----GS---KY-KVYPT-YD 430 (758)
Q Consensus 361 ~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~-----~~---~~-~~~Pt-Y~ 430 (758)
..|.... ..++ ..+. ...-|-|++. .+|.-+ |. +| --||+ |
T Consensus 173 ~~cg~~~-------------------~~v~--~~d~------~~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW- 223 (353)
T cd00674 173 EKCGKDT-------------------TTVE--AYDA------KAGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW- 223 (353)
T ss_pred CCcCcce-------------------eEEE--EEeC------CCCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-
Confidence 1222100 0010 0110 0123566652 233211 11 33 23442 2
Q ss_pred ccccccccccCccEEeeCCCCCCc---hHHHHHHHH-HhCCCcceEeeeeeeecccc-cccchhhhhhhhcCccCCCCCC
Q 043341 431 FACPFVDAKEGITHALRSSEYHDR---NAQYYRIQE-DLGVRKVHIYEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDP 505 (758)
Q Consensus 431 ~a~~vdD~~~githvirg~d~~~~---~~~~~~l~~-alg~~~p~~~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddp 505 (758)
...||+-=+-|.||..+ ...-..+.+ .||.+.|....|+++.+.+. |||||+++
T Consensus 224 -------~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn-------------- 282 (353)
T cd00674 224 -------AILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN-------------- 282 (353)
T ss_pred -------hhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC--------------
Confidence 23566666679999988 777778887 99999898778888888876 99999974
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHhccccccccccHH
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
..++.++++. ++++++|.|+++..-...+..||++
T Consensus 283 -vI~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 283 -VITPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred -cCCHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChh
Confidence 3488899888 9999999999887435567788875
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=136.83 Aligned_cols=240 Identities=17% Similarity=0.168 Sum_probs=152.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-----------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK----------------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r----------------------------- 295 (758)
++.--+.+|||.+||||++..+..+.++| ++...||.--||.|+-|
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 66666778999999999999988888777 45567777778887521
Q ss_pred ---chHHHHHHHHHHHHHhCCCCCCcccccCC--HHHHHHHHHHHH-HhCceeccCCchHHHHHHhc----CCC------
Q 043341 296 ---ESNEFVDNLLKDIETLGIKYETVTYTSDY--FPDLMEMAENLI-RQGKAYVDDTPREQMQKERM----DGI------ 359 (758)
Q Consensus 296 ---~~~~~~~~i~~dl~~LGi~~d~~~~~S~~--~~~~~~~~~~Li-~~G~aY~~~~~~e~~~~~~~----~~~------ 359 (758)
..+.|.+.+.+.|+.|||++| ++++++. -..|.+.+...+ +.+.+. +.+.+.+. ..|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~d-~~~~t~~y~~g~~~~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~~pi 177 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEYE-FISATECYKSGRYDEAILTALENRDEIM------EILLPYLGEERQATYSPFLPI 177 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCceE-EEehhhhhccCchHHHHHHHHHhHHHHH------HHHHHhcCCccCCCeeeeeee
Confidence 223566888899999999998 3344331 113433333333 334333 23333321 111
Q ss_pred CCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe-eecCCCCCCCCCCcEEEEeCCCCCcc-----cCC---cc-cccc-c
Q 043341 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRG-KLDMQDPNKSLRDPVYYRCNPIPHHR-----IGS---KY-KVYP-T 428 (758)
Q Consensus 360 ~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~-k~~~~~~~~~~~D~vl~R~~~~~~~~-----~~~---~~-~~~P-t 428 (758)
...|... ..... ..|. . .--|-|++. .+|.- .|. +| --|| -
T Consensus 178 c~~cg~~---------------------~~~~~~~~d~--~----~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~r 229 (510)
T PRK00750 178 CPKCGKV---------------------LTTPVISYDA--E----AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMR 229 (510)
T ss_pred CCCCCcc---------------------ceEEEEEEeC--C----CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHH
Confidence 1122211 00000 1110 0 012445442 22211 111 33 2344 2
Q ss_pred ccccccccccccCccEEeeCCCCCC-chHHHHHHHH-HhCCCcceEeeeeeeecc-cccccchhhhhhhhcCccCCCCCC
Q 043341 429 YDFACPFVDAKEGITHALRSSEYHD-RNAQYYRIQE-DLGVRKVHIYEFSRLNMV-YTLLSKRKLLWFVQNGKVDGWDDP 505 (758)
Q Consensus 429 Y~~a~~vdD~~~githvirg~d~~~-~~~~~~~l~~-alg~~~p~~~~~~~l~~~-~~klSKR~~~~li~~g~~~gwddp 505 (758)
| ...||+..+.|.||.. +...+..+.+ .||.+.|..+.|+++... |+|||||+++.
T Consensus 230 W--------~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~------------- 288 (510)
T PRK00750 230 W--------AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV------------- 288 (510)
T ss_pred H--------HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc-------------
Confidence 3 3467899999999999 9999999998 999999988888999888 89999999743
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
.++.++.+. ++++++|.|+.......++..|++ |......
T Consensus 289 --i~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~de 328 (510)
T PRK00750 289 --ITIEDWLEY-APPESLRLFMFARPKPAKRLDFDV--IPKLVDE 328 (510)
T ss_pred --cCHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHH
Confidence 477888887 899999988887667777888887 4444333
|
|
| >cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-11 Score=105.65 Aligned_cols=93 Identities=27% Similarity=0.392 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccc
Q 043341 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFS---SGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW 168 (758)
Q Consensus 92 l~yL~~~~~L~p~~~~era~v~~wl~~~~~~l---~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~ 168 (758)
+|||++...|+|.++.+++++++|+++....+ ...++...++.||++|+.++|++|+++|+|||++++.+.+.
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~vd~~~d~~~~~l~~~~~~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---- 76 (96)
T cd03200 1 ARFLYRLLGPAPNAPNAATNIDSWVDTAIFQLAEGSSKEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---- 76 (96)
T ss_pred CchHHHHhcccCCCchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc----
Confidence 47898887799999999999999999775333 34788899999999999999999999999999999988753
Q ss_pred ccccccccChhHHHHHHHHHhh
Q 043341 169 DSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 169 ~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
+.. ...+|+|.+|+++|.++
T Consensus 77 -~~~-~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 77 -GLA-SAAPANVQRWLKSCENL 96 (96)
T ss_pred -ccc-cccChHHHHHHHHHHhC
Confidence 111 35799999999999763
|
Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents. |
| >cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-11 Score=107.96 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHhccccCCh--------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG--------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
.++..++++++|+.|....+.+ +.+.+.++.||+.|++++|++|+++|+|||++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 4788999999999998887663 47888999999999999999999999999999988866
Q ss_pred hhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 164 TGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 164 l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+............+|+|.+|+++|.++ |+|+++
T Consensus 82 ~~~~~~~~~~~~~~P~L~~w~~r~~~r--pa~~~~ 114 (115)
T cd03196 82 FAHVDPKWFDQSPYPRLRRWLNGFLAS--PLFSKI 114 (115)
T ss_pred HHHhhhcccCcccCHHHHHHHHHHHcC--hHHHhh
Confidence 522111111247899999999999999 999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=109.57 Aligned_cols=148 Identities=13% Similarity=0.195 Sum_probs=108.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCCCcEEechHHHHHHHHHhC------
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG------ 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~------ 99 (758)
+.|| -+..||+|.+||..|.+.|++|+++++ .+||.|.. .|+.+.||.+|+.-|+.-.
T Consensus 91 l~Ly--QyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~-~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 91 LVLY--QYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLI-RGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred EEEE--eeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEe-ccceechhHHHHHHHHHHhccCCCC
Confidence 5677 899999999999999999999999876 89999998 5778999999998774321
Q ss_pred -----CCCC-----------------------------CCHHHHHHHHHHHHhccccCC----h----------------
Q 043341 100 -----NFYG-----------------------------QNAYEAGEIDEWLDYTPVFSS----G---------------- 125 (758)
Q Consensus 100 -----~L~p-----------------------------~~~~era~v~~wl~~~~~~l~----~---------------- 125 (758)
.+|| .+.+.+..-..|-+|++..+. |
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf 247 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWF 247 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHH
Confidence 2333 111223344556666655432 0
Q ss_pred -------------------------------------------HHHHHHHHHHHHhc-ccCCcccCCCCCHhHHHHHHHH
Q 043341 126 -------------------------------------------SEFENACTYVDKYL-ERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 126 -------------------------------------------~~l~~~L~~Le~~L-~~~~flvG~~lTlADi~l~~~L 161 (758)
+.+-.+++.+-..| .+++|+.|+++++||+++|..|
T Consensus 248 ~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl 327 (370)
T KOG3029|consen 248 SQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVL 327 (370)
T ss_pred HHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhh
Confidence 44555555555566 5789999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
..+......- ..-+..++..||-+|++.
T Consensus 328 ~sm~gc~afk-d~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 328 RSMEGCQAFK-DCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hHhhhhhHHH-HHHhcchHHHHHHHHHHH
Confidence 9874433322 244678899999999887
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=130.85 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=71.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------cc------------cchH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------PA------------KESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------~~------------r~~~ 298 (758)
+++==+|+|||.|||||+++.++.+.+|| ...|.-++.+-.+| ++ ....
T Consensus 41 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~ 120 (800)
T PRK13208 41 SIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTD 120 (800)
T ss_pred EEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence 44444899999999999999999999998 35677777653333 22 1344
Q ss_pred HHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 299 EFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++.+.|.++++.||+..| ..+++++ +....+.+..+|.++|++|
T Consensus 121 ~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy 168 (800)
T PRK13208 121 EDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIY 168 (800)
T ss_pred HHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCee
Confidence 678999999999998766 5555544 6667888999999999999
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=125.45 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=72.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc--------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA--------------------------------K 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~--------------------------------r 295 (758)
+++==||++||.||||||++.++.+.+|| +..|.-++.+-.+|-. .
T Consensus 36 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~ 115 (861)
T TIGR00422 36 CIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWE 115 (861)
T ss_pred EEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHH
Confidence 44555899999999999999999999998 4568888877555510 0
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..+|.+.|.+.++.||+..| ..+++.+ +.+..+....+|.++|++|
T Consensus 116 ~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 166 (861)
T TIGR00422 116 WKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIY 166 (861)
T ss_pred HHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCee
Confidence 134678999999999997765 5455544 6677889999999999999
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=109.26 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=123.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeee----ee---------------------c--------------------CC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPT----ET---------------------S--------------------GS 73 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~----~~---------------------~--------------------g~ 73 (758)
..|| ..-.||.+.|.+|+=+++|+.--+ +. . -+
T Consensus 52 YhLY--vslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 52 YHLY--VSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred EEEE--EEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 5777 666899999999999999975221 10 0 46
Q ss_pred ccEEEeCCCcEE--echHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHhccccCCh------------------
Q 043341 74 APTFSFSNGSKL--QGTYVLLRYIGRVG--------NFYGQNAYEAGEIDEWLDYTPVFSSG------------------ 125 (758)
Q Consensus 74 vP~L~~~~g~~l--~ES~aIl~yL~~~~--------~L~p~~~~era~v~~wl~~~~~~l~~------------------ 125 (758)
||+|-+..-.+| .||..|++.+...+ .|||. ..|.+++.|.+|+...+..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 999988654444 59999999998766 68884 4689999999998877653
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccccc-----ccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS-----LRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~-----~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+-..|+.||+.|+.+.||+|+++|-||+.+|++|.++....-+ ......||||..|+..+-+. |+|.+..
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~--pg~~~T~ 284 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQL--PGFAETV 284 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcC--ccccccc
Confidence 566778899999999999999999999999999999987554422 22356799999999999998 9987763
|
|
| >cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-10 Score=101.48 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
..+.+.++.||++|++++|++|+++|+|||++++.+.++.. .... ...+|+|.+|+++|.++ |+++++
T Consensus 46 ~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~k~~ 113 (114)
T cd03188 46 ERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPG--VGLD-LSDWPNLAAYLARVAAR--PAVQAA 113 (114)
T ss_pred HHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhh--cCCC-hhhChHHHHHHHHHHhC--HHhHhh
Confidence 46778889999999988999999999999999999887532 2222 45799999999999999 999876
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for |
| >COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=102.55 Aligned_cols=143 Identities=13% Similarity=0.194 Sum_probs=108.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~ 102 (758)
|+|| -|..||+|.++|+++.++|+|++.... .+||+|+-+||..+.||..|++|+++.. +++
T Consensus 1 MkLY--IYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLY--IYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred Ccee--EeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 6888 788999999999999999999987432 7899999999999999999999999987 333
Q ss_pred CCCHHHHHHHHHHHHhccccCCh---------------------------------------------HHHHHHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSSG---------------------------------------------SEFENACTYVDK 137 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~~---------------------------------------------~~l~~~L~~Le~ 137 (758)
- ...+..+..|+.-+...... +++...|+.|+.
T Consensus 79 t--~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~ 156 (215)
T COG2999 79 T--GKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDK 156 (215)
T ss_pred c--cCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHH
Confidence 2 22345677787655443220 566777888888
Q ss_pred hcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 138 ~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
.+...+=+.| .+|.-||.+|+.|+.+ ....++.| -..|..|+.+|.+.
T Consensus 157 Li~~~s~~n~-~l~~ddi~vFplLRnl-t~v~gi~w---ps~v~dy~~~msek 204 (215)
T COG2999 157 LIVGPSAVNG-ELSEDDILVFPLLRNL-TLVAGIQW---PSRVADYRDNMSEK 204 (215)
T ss_pred HhcCcchhcc-ccchhhhhhhHHhccc-eecccCCC---cHHHHHHHHHHHHh
Confidence 8776663344 6999999999999986 33334321 24689999999887
|
|
| >cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-10 Score=99.96 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccc
Q 043341 107 YEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD 169 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~ 169 (758)
.+|+++++|+.|+.+.+.+ ..+.+.+..||+.|++++|++|+++|+|||++++.+.+.. ..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~--~~ 79 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP--AL 79 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH--Hc
Confidence 4678888888887664442 4677788999999999999999999999999999986542 22
Q ss_pred cccccccChhHHHHHHHHHhhccchHHHH
Q 043341 170 SLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 170 ~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+......+|++.+|+++|.++ |+|+++
T Consensus 80 ~~~~~~~~p~l~~w~~~~~~r--pa~~~~ 106 (107)
T cd03186 80 GIELPKQAKPLKDYMERVFAR--DSFQKS 106 (107)
T ss_pred CCCCcccchHHHHHHHHHHCC--HHHHHh
Confidence 322224799999999999999 999875
|
coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.6e-09 Score=117.41 Aligned_cols=235 Identities=15% Similarity=0.190 Sum_probs=137.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccchH-------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKESN------------------------- 298 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~~~------------------------- 298 (758)
+++.-=+-+|||.+||||++..+..+.++| .+.-.||.--||.|+-|.++
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 355555666999999999999988877776 45567777778887544322
Q ss_pred -----HHHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHh-CceeccCCchHHHHHHhc----CCC------C
Q 043341 299 -----EFVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQ-GKAYVDDTPREQMQKERM----DGI------E 360 (758)
Q Consensus 299 -----~~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~-G~aY~~~~~~e~~~~~~~----~~~------~ 360 (758)
.|...+.++|+.|||+++ ++++|+... .|.+.+...+++ ..+. +.+.+.+. ..| .
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~------~il~~~~~~~~~~~~~P~~pic 171 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINPE-FIRASKQYTSGLYASQIKIALDHRKEIS------EILNEYRTSKLEENWYPISVFC 171 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE-EEEHHHhhhcCChHHHHHHHHHhHHHHH------HHHHHhcCCccCCCceeeeeec
Confidence 345777888999999874 334443221 133333332221 1111 12222221 111 1
Q ss_pred CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-----CC---cc-ccccc-cc
Q 043341 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI-----GS---KY-KVYPT-YD 430 (758)
Q Consensus 361 ~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~-----~~---~~-~~~Pt-Y~ 430 (758)
..|.... ..++ .. + ..+.|-|+|. .+|.-+ |. +| --||+ |
T Consensus 172 ~~cGrv~-------------------~~~~--~~-----~--~~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~RW- 221 (515)
T TIGR00467 172 ENCGRDT-------------------TTVN--NY-----D--NEYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPARW- 221 (515)
T ss_pred CCcCccC-------------------ceEE--Ee-----c--CCceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhhH-
Confidence 1222110 0000 01 1 1124667653 333211 11 34 23442 3
Q ss_pred ccccccccccCccEEeeCCCCCCch----HHHHHHHHHhCCCcce--EeeeeeeecccccccchhhhhhhhcCccCCCCC
Q 043341 431 FACPFVDAKEGITHALRSSEYHDRN----AQYYRIQEDLGVRKVH--IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD 504 (758)
Q Consensus 431 ~a~~vdD~~~githvirg~d~~~~~----~~~~~l~~alg~~~p~--~~~~~~l~~~~~klSKR~~~~li~~g~~~gwdd 504 (758)
...|||.=--|.||+.+. .+.....++||..+|. .+++.||...|.|||||+++
T Consensus 222 -------~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn------------- 281 (515)
T TIGR00467 222 -------KIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD------------- 281 (515)
T ss_pred -------hhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC-------------
Confidence 123344334599999744 4444445799888775 34445666667799999974
Q ss_pred CCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHH
Q 043341 505 PRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKL 544 (758)
Q Consensus 505 pr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l 544 (758)
..|++++++. ++++++|.|++.. ..+++.+||++.|
T Consensus 282 --~itl~dll~~-~~pdalR~~~l~~-~~~~~ldFd~~~l 317 (515)
T TIGR00467 282 --VISVKDVLEV-YTPEITRFLFART-KPEFHISFDLDVI 317 (515)
T ss_pred --CccHHHHHHH-cCHHHHHHHHhcc-CCCCCCcCCHHHH
Confidence 4599999998 8999999987765 8899999999977
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=102.89 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=111.3
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCCCC--CH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFYGQ--NA 106 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~p~--~~ 106 (758)
...+++++++.+.|.++|++|.+..+ |++|.|.. ||..++||..|-++|.+.+ +-++. ++
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~-d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF-DEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe-CCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 35688999999999999999988654 99999998 8899999999999999998 22332 33
Q ss_pred HHHH----HHHHHHHhcccc------CChHHHHHHHHHHHHhccc---CCcccCCCCCHhHHHHHHHHhhhhccc---cc
Q 043341 107 YEAG----EIDEWLDYTPVF------SSGSEFENACTYVDKYLER---RTFVVGHSLSIVDIAIWSALAGTGQRW---DS 170 (758)
Q Consensus 107 ~era----~v~~wl~~~~~~------l~~~~l~~~L~~Le~~L~~---~~flvG~~lTlADi~l~~~L~~l~~~~---~~ 170 (758)
+... ...++..|+-.. .....+-+.|..||++|+. ++||.|+++|+||+.+.+-|+.+.... ..
T Consensus 97 E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~ 176 (221)
T KOG1422|consen 97 ESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKN 176 (221)
T ss_pred HHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcC
Confidence 3222 222333442111 1124677788999999985 699999999999999999999873322 23
Q ss_pred ccccccChhHHHHHHHHHhhccchHHH
Q 043341 171 LRKSKKYQNLVRWFNSLSAEYSDSLDE 197 (758)
Q Consensus 171 ~~~~~~~P~L~rW~~~i~~~~~p~~~~ 197 (758)
++.-+.+++|.||+..+.++ .+|..
T Consensus 177 ~~IP~~lt~V~rYl~~~ya~--d~F~~ 201 (221)
T KOG1422|consen 177 FEIPASLTGVWRYLKNAYAR--DEFTN 201 (221)
T ss_pred CCCchhhhHHHHHHHHHHhH--HHhhc
Confidence 33446789999999999998 66654
|
|
| >KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=106.20 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=112.8
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhCCCCC-CCHHHHHHHHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYG-QNAYEAGEIDEWL 116 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~p-~~~~era~v~~wl 116 (758)
-..||+|+++...+...++|||.+.. |++|-+++ ||..+.+|.-|...|.+.+++-- -++.++|+..+..
T Consensus 58 PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIEL-NGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~ 136 (281)
T KOG4244|consen 58 PNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIEL-NGEHIADSDLIEDRLRKHFKIPDDLSAEQRAQSRALS 136 (281)
T ss_pred CCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEe-CCeeccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998653 99999999 99999999999999998872211 3466777666554
Q ss_pred HhccccCC--------------------------------------------------------h----HHHHHHHHHHH
Q 043341 117 DYTPVFSS--------------------------------------------------------G----SEFENACTYVD 136 (758)
Q Consensus 117 ~~~~~~l~--------------------------------------------------------~----~~l~~~L~~Le 136 (758)
.+++..+. . +.+.+-|+.++
T Consensus 137 rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~ 216 (281)
T KOG4244|consen 137 RMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAIS 216 (281)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHH
Confidence 44332211 0 33466678899
Q ss_pred HhcccCCcccCCCCCHhHHHHHHHHhhhhc-cccccc--ccccChhHHHHHHHHHhhccc
Q 043341 137 KYLERRTFVVGHSLSIVDIAIWSALAGTGQ-RWDSLR--KSKKYQNLVRWFNSLSAEYSD 193 (758)
Q Consensus 137 ~~L~~~~flvG~~lTlADi~l~~~L~~l~~-~~~~~~--~~~~~P~L~rW~~~i~~~~~p 193 (758)
..|.+++||.|+++|-+|+.+|+.|..+.- ...... ....+|||..|.+||.+.+.|
T Consensus 217 ~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~~yP 276 (281)
T KOG4244|consen 217 DYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKEIYP 276 (281)
T ss_pred HHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHHhCC
Confidence 999999999999999999999999988521 111111 245799999999999998665
|
|
| >cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=99.92 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
..+.+.++.||.+|+.++|++|+++|+|||++++.+.++... ........+|+|.+|+++|.++ |+++++
T Consensus 48 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~--p~~~~~ 117 (118)
T cd03187 48 EKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMAT-PFAKLFDSRPHVKAWWEDISAR--PAWKKV 117 (118)
T ss_pred HHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHc-cchhhhhcCchHHHHHHHHHhC--HHHHhh
Confidence 467788899999999899999999999999999998876321 1111246799999999999999 999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a |
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=120.69 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=71.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc--------------------c------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA--------------------K------------ 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~--------------------r------------ 295 (758)
+++==||++||.||||||++.++-+.++| +..|.-++.+-.+|-. .
T Consensus 39 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~ 118 (874)
T PRK05729 39 SIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWE 118 (874)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHH
Confidence 44444799999999999999999999998 4567777777655521 0
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..++.+.|.+.++.||+..| ..+++.+ +......+..+|.++|++|
T Consensus 119 w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 169 (874)
T PRK05729 119 WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIY 169 (874)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEe
Confidence 034577999999999997755 5555544 5667889999999999999
|
|
| >cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=99.74 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+...++.||+.|++++|++|+++|+|||++++.+.+.... .......+|++.+|+++|.++ |++++++
T Consensus 43 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~ 112 (113)
T cd03178 43 NEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWI--GIDDLDDFPNVKRWLDRIAAR--PAVQRGL 112 (113)
T ss_pred HHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhc--cccchhhchHHHHHHHHHhhC--HHHHHhc
Confidence 567788899999999899999999999999999999886322 222256799999999999999 9999874
|
Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en |
| >cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=103.36 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccc
Q 043341 107 YEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW 168 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~ 168 (758)
..|+++++|++|....+.+ ..+...|+.||++|++++|++|+++|+|||++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 4578889998887765542 5677788999999999999999999999999999987642111
Q ss_pred ---c--cccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 169 ---D--SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 169 ---~--~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
. +......||+|.+|+++|.++ |+++++...
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~--P~~k~~~~~ 118 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQN--PGVAETTNF 118 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcC--chHhhhcCH
Confidence 0 111245899999999999999 999988654
|
ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast. |
| >cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=99.81 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.+...++.||+.|+.++|++|+++|+|||++++.+.+.............+|++.+|++++.++ |+|++++.+.
T Consensus 43 ~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 117 (123)
T cd03181 43 EELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQ--PIFKAVFGEV 117 (123)
T ss_pred HHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcC--HHHHHHcCCC
Confidence 56778899999999999999999999999999999887522222222246799999999999999 9999987664
|
EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role |
| >cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=97.07 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHhccccCCh--------------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSSG--------------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~~--------------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
|.++.+|+++++|+.|..+.+.+ ..+.+.++.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 56778888888888776554331 2466778889999999999999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
|+|||++++.+.++... .. ....+|+|.+|+++|+++
T Consensus 82 t~ADi~l~~~~~~~~~~--~~-~~~~~p~l~~w~~~~~~~ 118 (119)
T cd03189 82 TAADIMMSFPLEAALAR--GP-LLEKYPNIAAYLERIEAR 118 (119)
T ss_pred CHHHHHHHHHHHHHHHc--Cc-ccccCchHHHHHHHHhcC
Confidence 99999999888876322 22 257899999999999987
|
cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl |
| >cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-09 Score=89.33 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=52.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeC-CCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFS-NGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~-~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.|++|++++++|.++|++|+.+.+ |++|+|+++ +|..|+||.+|++||++.+
T Consensus 2 ~~Ly--~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELY--EFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEe--cCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 6899 889999999999999999999988643 899999885 5789999999999999864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-09 Score=100.10 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcc--
Q 043341 107 YEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR-- 167 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~-- 167 (758)
.+|+++++|+.|..+.+.+ ..+...++.||+.|+.++|++|+++|+|||++++.+.++...
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3677788887776544331 467788999999999899999999999999999998876221
Q ss_pred ccccc--ccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 168 WDSLR--KSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 168 ~~~~~--~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
..+.. ....+|++.+|+++|.++ |++++++..
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 115 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLEL--EAVKEVLPD 115 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhc--cHHHHhCCC
Confidence 11222 246799999999999999 999987554
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi |
| >cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-09 Score=97.09 Aligned_cols=70 Identities=24% Similarity=0.497 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+.+.++.||++|++++|++|+++|+||+++++.+.++.. ....+ ...+|+|.+|+++|.++ |+|++..
T Consensus 41 ~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~-~~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~ 110 (118)
T cd03177 41 DKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA-LLPLD-LSKYPNVRAWLERLKAL--PPYEEAN 110 (118)
T ss_pred HHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH-hcCCC-hhhCchHHHHHHHHHcc--cchHHHH
Confidence 56788899999999988999999999999999999988632 12222 45799999999999999 9999865
|
GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th |
| >cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-09 Score=97.84 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 127 EFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 127 ~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.+...|..||++|++ .+||+|+++|+|||++++.+.++.. .+.+ ...+|+|.+|+++|.++ |+|++++.
T Consensus 48 ~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~ 118 (121)
T cd03191 48 WIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARR--FGVD-LSPYPTIARINEACLEL--PAFQAAHP 118 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHH--hCCC-cccCcHHHHHHHHHHhC--hhHHHhCc
Confidence 457788899999984 4899999999999999999887522 2332 47899999999999999 99998753
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th |
| >cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-09 Score=97.98 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHh-cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh--hccchHHHHHHhh
Q 043341 126 SEFENACTYVDKY-LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~-L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~--~~~p~~~~~l~~~ 202 (758)
+.+.+.++.||+. ++.++|++|+++|+|||++++.+.+.. ..+.+..+.+|+|.+|+++|.+ + |+++++++.+
T Consensus 48 ~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~--~~~~~~~~~~p~l~~w~~~~~~~~~--p~~~~~~~~~ 123 (126)
T cd03183 48 ENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPE--AAGYDVFEGRPKLAAWRKRVKEAGN--PLFDEAHKII 123 (126)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHH--hcCCcccccCchHHHHHHHHHHhcc--hhHHHHHHHH
Confidence 4678889999997 555789999999999999999887652 2233335789999999999999 9 9999988764
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio |
| >cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-09 Score=97.44 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHhcc---cCCcccCCCCCHhHHHHHHHHhhhhc---c
Q 043341 105 NAYEAGEIDEWLDYTPVFS-----------SGSEFENACTYVDKYLE---RRTFVVGHSLSIVDIAIWSALAGTGQ---R 167 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l-----------~~~~l~~~L~~Le~~L~---~~~flvG~~lTlADi~l~~~L~~l~~---~ 167 (758)
|+.+|+++++|+.|..... ..+.+...++.||+.|+ +++|++| ++|+|||++++.+.++.. .
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~ 79 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSE 79 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988822111 02566788899999997 4799999 999999999999876422 1
Q ss_pred cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 168 WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 168 ~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
..+......+|+|.+|+++|.++ |+++++..
T Consensus 80 ~~~~~~~~~~P~l~~W~~~~~~r--p~~~~~~~ 110 (120)
T cd03203 80 LFNYDITEGRPNLAAWIEEMNKI--EAYTQTKQ 110 (120)
T ss_pred hcCccccccCcHHHHHHHHHhcc--hHHHhHcC
Confidence 13333336899999999999999 99988754
|
GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar |
| >cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-09 Score=96.23 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhccccCC------------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 105 NAYEAGEIDEWLDYTPVFSS------------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~------------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
|+.+|+++++|+.|+.+.+. ...+...+..||+.|+.++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 45678888888887543321 055777889999999988999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
|++++.+.++.. .+......+|+|.+|++++.++ |++
T Consensus 81 i~l~~~~~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV--VKLRVPEELTHLRAWYDRMAAR--PSA 117 (117)
T ss_pred HHHHHHhHHHHh--cCCCCccccHHHHHHHHHHHhc--cCC
Confidence 999999987632 2333246899999999999999 863
|
cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti |
| >cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-09 Score=86.96 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=51.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..|++++++|++|.++|++|+.+.+ +++|+|++++|..|+||.+|++||++
T Consensus 1 ~~Ly--~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLY--IYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceE--ecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5788 889999999999999999999997543 89999998668999999999999974
|
coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses. |
| >PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-09 Score=93.43 Aligned_cols=81 Identities=35% Similarity=0.650 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcc---------------ccCChHHHHHHHHHHHHhcccCC--cccCCCCCHhHHHHHHHHhhhhcc
Q 043341 105 NAYEAGEIDEWLDYTP---------------VFSSGSEFENACTYVDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQR 167 (758)
Q Consensus 105 ~~~era~v~~wl~~~~---------------~~l~~~~l~~~L~~Le~~L~~~~--flvG~~lTlADi~l~~~L~~l~~~ 167 (758)
++..++++++|+.|.. .....+.+...++.||++|+.++ ||+|++||+||+++|+.|..+.
T Consensus 2 ~~~~~a~i~~W~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~-- 79 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSVAFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLR-- 79 (99)
T ss_dssp --TTHHHHHHHHH-GHCCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHhccchhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh--
Confidence 4557889999999651 01113788999999999999988 9999999999999999997642
Q ss_pred cccccccccChhHHHHHHHHHh
Q 043341 168 WDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 168 ~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
+...+ ..+|||.+|+++|++
T Consensus 80 ~~~~~--~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 WADFP--KDYPNLVRWYERIEE 99 (99)
T ss_dssp CCHHT--TTCHHHHHHHHHHHT
T ss_pred hcccc--cccHHHHHHHHhhcC
Confidence 22111 589999999999974
|
... |
| >cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-09 Score=93.52 Aligned_cols=69 Identities=10% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
..+...++.||++|++++|++|+++|+|||++++.+.+.... + ....+|+|.+|+++|.++ |+++++++
T Consensus 33 ~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~--~--~~~~~p~l~~w~~~~~~~--p~~~~~~~ 101 (103)
T cd03207 33 GSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF--G--LLPERPAFDAYIARITDR--PAFQRAAA 101 (103)
T ss_pred hhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc--C--CCCCChHHHHHHHHHHcC--HHHHHHhc
Confidence 568899999999999999999999999999999999886322 2 246899999999999999 99998865
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=86.58 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.7
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
+|| +++.++++++++++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++++|
T Consensus 3 ~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~-~g~~l~ES~AI~~YL~~~~~~ 78 (79)
T cd03077 3 VLH--YFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEI-DGMKLVQTRAILNYIAGKYNL 78 (79)
T ss_pred EEE--EeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEE-CCEEEeeHHHHHHHHHHHcCC
Confidence 677 888889999999999999999986432 79999987 889999999999999998754
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the |
| >cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=92.45 Aligned_cols=65 Identities=17% Similarity=0.350 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+.+.+.++.||+.|.+++|++|+++|+|||++++.+..... ... ....+|+|.+|+++|.++ |+|
T Consensus 46 ~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~--~~~-~~~~~p~l~~~~~~~~~~--p~~ 110 (110)
T cd03180 46 AAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFE--LPI-ERPPLPHLERWYARLRAR--PAF 110 (110)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHH--ccc-ccccCchHHHHHHHHHhC--CCC
Confidence 46788899999999989999999999999999988753211 112 257899999999999999 864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=84.40 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +.+.++++.+++++++++|++|+.+.+ |++|+|+. +|..|+||.||++||++++
T Consensus 1 ~~ly--~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLY--SGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVD-RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEE--ECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHHhhC
Confidence 5788 888899999999999999999998543 99999987 7789999999999999864
|
coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. |
| >cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=85.25 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=51.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| +++.++++++++++++++|++|+.+.+ |++|+|++ +|.+|+||.||++||++++
T Consensus 1 ~~ly--~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLY--YDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD-GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEe--eCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE-CCEEEEcHHHHHHHHHhhC
Confidence 4688 888999999999999999999987432 99999987 7899999999999999864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC |
| >cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=86.00 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCC--CcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSN--GSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~--g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |++|+|++++ |..|+||.||++||+++
T Consensus 2 ~~Ly--~~~-~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 2 ITLY--THG-TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred eEEE--eCC-CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 6888 665 59999999999999999986432 8999999854 89999999999999987
Q ss_pred C
Q 043341 99 G 99 (758)
Q Consensus 99 ~ 99 (758)
+
T Consensus 79 ~ 79 (81)
T cd03048 79 Y 79 (81)
T ss_pred h
Confidence 5
|
Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and |
| >cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-08 Score=84.69 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=51.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++++++++++|++|+.+.+ |++|+|++ +|.+|+||.+|++||++.+
T Consensus 1 ~~Ly--~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~-~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLL--GAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLH-NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEE--ECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE-CCEEeehHHHHHHHHHhhC
Confidence 5888 888999999999999999999987432 79999997 7899999999999998763
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, |
| >cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=84.93 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=49.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| +++.++++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLY--YLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD-NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEE--eCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE-CCEEEEcHHHHHHHHhC
Confidence 5788 888999999999999999999987432 89999987 78999999999999974
|
GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress. |
| >cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=85.02 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=50.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..++++++++++|+++|++|+...+ |++|+|++ +|..|+||.||++||++
T Consensus 2 ~~Ly--~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLT--YFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKD-GDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEE--EeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEE-CCEEEEcHHHHHHHHhc
Confidence 6898 888899999999999999999987542 99999987 78999999999999976
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w |
| >PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=86.44 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred EEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 41 IKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 41 L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|| ++..|++|++++++++++|++|+.+.+ |++|+|+. ||.+|+||.+|++||++.+
T Consensus 1 Ly--~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~-~g~~l~dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 1 LY--GFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVD-DGEVLTDSAAIIEYLEERY 71 (75)
T ss_dssp EE--EETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEE-TTEEEESHHHHHHHHHHHS
T ss_pred CC--CcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEE-CCEEEeCHHHHHHHHHHHc
Confidence 56 889999999999999999999998654 99999995 7999999999999999976
|
... |
| >cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=84.91 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=48.2
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+|| ++..|+++++++++|+++|++|+...+ |+||+|++ ||.+|+||.||++||+
T Consensus 2 ~ly--~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~-~g~~l~Es~aI~~yLe 73 (73)
T cd03052 2 VLY--HWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH-GDNIICDPTQIIDYLE 73 (73)
T ss_pred EEe--cCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 677 888888999999999999999988532 99999986 8999999999999984
|
More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates. |
| >KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=98.00 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=116.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCC----eeee------------e-----------------c--------------
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGIT----IPTE------------T-----------------S-------------- 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~----~~~~------------~-----------------~-------------- 71 (758)
..|| ..-++|++.|.+++.+++|++ +..+ . .
T Consensus 38 yhLY--vslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 38 YHLY--VSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred EEEE--EeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 5677 566899999999999999974 1110 0 0
Q ss_pred ------CCccEEEeCCCcEE--echHHHHHHHHH---hC---------CCCCCCHHHHHHHHHHHHhccccCCh------
Q 043341 72 ------GSAPTFSFSNGSKL--QGTYVLLRYIGR---VG---------NFYGQNAYEAGEIDEWLDYTPVFSSG------ 125 (758)
Q Consensus 72 ------g~vP~L~~~~g~~l--~ES~aIl~yL~~---~~---------~L~p~~~~era~v~~wl~~~~~~l~~------ 125 (758)
-+||+|-+-.-.+| .||..|++.+.. .+ .|+| +..++++++|.+|....+..
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCceeeec
Confidence 47999987533333 699999999983 32 6777 44689999999998877652
Q ss_pred ------------HHHHHHHHHHHHhcccCC--cccCCCCCHhHHHHHHHHhhhhcccccc-----c-ccccChhHHHHHH
Q 043341 126 ------------SEFENACTYVDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQRWDSL-----R-KSKKYQNLVRWFN 185 (758)
Q Consensus 126 ------------~~l~~~L~~Le~~L~~~~--flvG~~lTlADi~l~~~L~~l~~~~~~~-----~-~~~~~P~L~rW~~ 185 (758)
.++-+.|+.+|+.|+.+- |++|++||.|||.+|+++-++.....-. . ....||+|..|..
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk 273 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLK 273 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHH
Confidence 567778899999999876 9999999999999999988764332111 1 2458999999999
Q ss_pred HHHhhccchHHHH
Q 043341 186 SLSAEYSDSLDEV 198 (758)
Q Consensus 186 ~i~~~~~p~~~~~ 198 (758)
.+-..+ |+|+..
T Consensus 274 ~iY~~~-~~~~~T 285 (319)
T KOG2903|consen 274 NIYWNI-PGFSST 285 (319)
T ss_pred HHHhhc-cchhhc
Confidence 998843 777654
|
|
| >cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-08 Score=83.95 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=49.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.|+++++++++|+++|++|+...+ |++|+|+++||..|+||.||++||+
T Consensus 1 ~~Ly--~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLY--DSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEE--eCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 4788 888899999999999999999987432 8999999878899999999999984
|
cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock. |
| >cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=84.00 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=50.7
Q ss_pred eEEEecccC-------CCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFP-------ADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~-------~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| .+. .|+++++++++|+++|++|+...+ |++|+|++ +|.+|+||.+|++||++++
T Consensus 2 ~~L~--~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~-~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 2 ITLY--QFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIEL-NGEKIADSELIIDHLEEKY 74 (75)
T ss_pred EEEE--ecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEE-CCEEEcCHHHHHHHHHHHc
Confidence 5777 554 578999999999999999997654 99999998 7899999999999999875
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele |
| >cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-08 Score=83.89 Aligned_cols=56 Identities=23% Similarity=0.451 Sum_probs=50.1
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+|| ++..++++++++++++++|++|+.+.+ |++|+|++++|.+|+||.||++||++
T Consensus 2 ~Ly--~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLY--TYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEe--cCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 577 888889999999999999999987532 99999998778999999999999986
|
EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot |
| >cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-08 Score=83.87 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=49.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ ++++++++++|+++|++|+...+ |++|+|+.++|..|+||.||++||++.+
T Consensus 1 ~~Ly--~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLY--YSP-GACSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEE--eCC-CCchHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 4777 665 45788999999999999987432 9999999866999999999999999864
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. |
| >cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-08 Score=83.46 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++.|+++++++++++++|++|+...+ |++|+|+. +|..|+||.||++||+++
T Consensus 2 ~~Ly--~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~-~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLY--GAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED-GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEE--eCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHhhC
Confidence 6888 888899999999999999999987432 99999987 789999999999999863
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t |
| >cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=83.12 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=49.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..++++++++++|+++|++|+.+.. |++|+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLT--YFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEI-DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEE--EEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEE-CCEEEEecHHHHHHhhC
Confidence 4788 888899999999999999999988542 99999987 78999999999999964
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma |
| >cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=92.48 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccccCC---------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhccccc
Q 043341 108 EAGEIDEWLDYTPVFSS---------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDS 170 (758)
Q Consensus 108 era~v~~wl~~~~~~l~---------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~ 170 (758)
+||+.+.|+.+++..+. .+.+...++.||+.|++ ++|++|+++|+|||++++.+.++......
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~ 81 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLL 81 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhh
Confidence 46777777777643321 26778889999999985 79999999999999999998775221111
Q ss_pred ---ccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 171 ---LRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 171 ---~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
......+|+|.+|+++|.++ |+++.++..
T Consensus 82 ~~~~~~~~~~p~l~~w~~r~~~~--p~v~~~~~~ 113 (124)
T cd03184 82 LGYEFPLDRFPKLKKWMDAMKED--PAVQAFYTD 113 (124)
T ss_pred ccccCCcccChHHHHHHHHhccC--hHHHHHhCC
Confidence 11257899999999999999 999988653
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re |
| >PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=87.55 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
..+.+.|+.+|..|++++|++|+++|+||+++++.+.++........ .++||+|.+|+++|.++
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~ 94 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFL-FEKFPKLKKWYERMFAR 94 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT-HTTSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcc-cccCHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999998633222221 38999999999999988
|
The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S .... |
| >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-08 Score=81.98 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=48.9
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||..|+||.+|++|+
T Consensus 2 ~ly--~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILY--SFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEE--ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 577 788899999999999999999987643 999999987799999999999997
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r |
| >PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-08 Score=82.72 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
....++.+++++|+++|++|+...+ |++|+|++++|.+|+||.||++||++
T Consensus 7 ~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 7 NGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp SSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3444999999999999999998642 89999999559999999999999985
|
The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B .... |
| >cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-08 Score=92.63 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhccc----------------CCcccCCCCCHhHHHHHHHHhhhhccc---ccccccccChhHHHHHHH
Q 043341 126 SEFENACTYVDKYLER----------------RTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSKKYQNLVRWFNS 186 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~----------------~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~~~P~L~rW~~~ 186 (758)
+.+...|+.||++|++ ++|++|+++|+|||++++.+.++.... .+......+|+|.+|+++
T Consensus 32 ~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw~~r 111 (134)
T cd03198 32 KGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRYLKN 111 (134)
T ss_pred HHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHHHHH
Confidence 6788899999999987 689999999999999999988753211 233324789999999999
Q ss_pred HHhhccchHHHHH
Q 043341 187 LSAEYSDSLDEVT 199 (758)
Q Consensus 187 i~~~~~p~~~~~l 199 (758)
|.++ |+|++++
T Consensus 112 i~aR--Psfk~t~ 122 (134)
T cd03198 112 AYQR--EEFTNTC 122 (134)
T ss_pred HHCC--HHHHHHc
Confidence 9999 9998875
|
They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T |
| >cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=88.47 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 108 EAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 108 era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+++++|+.|..+.+.+ ..+...++.||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 467788888776554331 567788999999999889999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHH
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
.++.. .... ...+|++.+|++++
T Consensus 82 ~~~~~--~~~~-~~~~p~l~~~~~~~ 104 (105)
T cd03179 82 HVADE--GGFD-LADYPAIRAWLARI 104 (105)
T ss_pred Hhccc--cCCC-hHhCccHHHHHHhh
Confidence 88632 2232 56799999999987
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=89.19 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+.+...++.||+.|++++|++|+++|+|||++++.+.+... ... ....+|+|.+|+++|.++ |+|
T Consensus 36 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--~~~-~~~~~p~l~~~~~~~~~~--p~~ 100 (100)
T cd03206 36 ARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE--GGV-DLEDYPAIRRWLARIEAL--PGF 100 (100)
T ss_pred HHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc--cCC-ChhhCcHHHHHHHHHHhC--cCC
Confidence 57888999999999999999999999999999999876422 222 246899999999999999 864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-08 Score=82.00 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=49.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHh--cCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKL--AGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~--~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..|++++++++++++ +|++|+.+.+ |++|+|+.+||..|+||.||++||+
T Consensus 1 ~~Ly--~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLL--YSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEe--cCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4788 88899999999999999 8899887432 9999999778999999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-08 Score=82.07 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=48.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~l~--~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~-~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIW--GRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED-GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEE--ecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE-CCEEEECHHHHHHHhC
Confidence 4788 888999999999999999999987432 99999987 7889999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions. |
| >cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-08 Score=81.62 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=52.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeC---CCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFS---NGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~---~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| ++..|++|++++++|.++|++|+...+ +++|+|+++ +|.+|+||.+|++||++.
T Consensus 2 i~Ly--~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 2 ITLY--QYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred EEEE--EcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 5888 888999999999999999999998543 899999986 488999999999999875
|
Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure. |
| >cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-08 Score=81.27 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=48.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~L~--~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILY--SYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI-DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEe--cCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 5788 888999999999999999999987432 89999987 6889999999999984
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid. |
| >cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-08 Score=89.47 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
..+.+.+..||.+|++++|++|+++|+||+++++.+.++.... ......||+|.+|+++|.++ |++++++++
T Consensus 38 ~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~--~~~~~~~P~l~~~~~rv~~~--p~vk~~~~~ 109 (121)
T cd03209 38 AKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFE--PDCLDAFPNLKDFLERFEAL--PKISAYMKS 109 (121)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhC--ccccccChHHHHHHHHHHHC--HHHHHHHhc
Confidence 4678899999999998999999999999999999988863211 12256899999999999999 999998765
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m |
| >cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.9e-08 Score=80.28 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=49.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.|+++.+++++|+++|++|+...+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLY--GFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL-DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEE--eCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 4788 888999999999999999999987432 89999998 6899999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.6e-08 Score=80.07 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~ 186 (758)
+.+.+.++.||.+|+.++|++|+++|+||+++++.+.++............+|+|.+|+++
T Consensus 9 ~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 9 AQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4678899999999999999999999999999999999985443333446899999999985
|
... |
| >cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=83.43 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +...|+++++++++|+++|++|+.+.+ +++|+|++++|..|+||.||++||+
T Consensus 19 ~~Ly--~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 19 IRLY--SMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred EEEE--eCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 7998 888999999999999999999987543 8999999866899999999999984
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega |
| >cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=79.97 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=48.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ .+++.+++++|+++|++|+.+.+ +++|+|+. +|..|+||.||++||++.+
T Consensus 1 ~~l~--~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~aI~~yL~~~~ 75 (76)
T cd03046 1 ITLY--HLP-RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD-GDLVLTESAAIILYLAEKY 75 (76)
T ss_pred CEEE--eCC-CCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHHHHhC
Confidence 4677 554 57899999999999999987432 89999986 7899999999999999864
|
cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb |
| >cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=82.05 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=49.5
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+|| |+..++++++++++++++|++|+.+.+ |+||+|++ ||.+|+||.||++||
T Consensus 2 ~l~--y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~ES~AIl~YL 78 (82)
T cd03075 2 TLG--YWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID-GDVKLTQSNAILRYI 78 (82)
T ss_pred EEE--EeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE-CCEEEeehHHHHHHH
Confidence 577 888899999999999999999875321 69999987 889999999999999
Q ss_pred HHhC
Q 043341 96 GRVG 99 (758)
Q Consensus 96 ~~~~ 99 (758)
++++
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 9864
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc |
| >KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=89.10 Aligned_cols=144 Identities=11% Similarity=0.248 Sum_probs=113.9
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------CCccEEEeCCCcEEechHHHHHHHHHhC-CCC-CCCHHHHHHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFY-GQNAYEAGEIDE 114 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~-p~~~~era~v~~ 114 (758)
.+....|.+|...|..+++||.++.- |++|.|.+ |.++++|-.+|..+...+. .|- .-+..+++.++.
T Consensus 31 l~d~ascLAVqtfLrMcnLPf~v~~~~NaefmSP~G~vPllr~-g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 31 LPDNASCLAVQTFLRMCNLPFNVRQRANAEFMSPGGKVPLLRI-GKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred cccchhHHHHHHHHHHcCCCceeeecCCccccCCCCCCceeee-cchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 45788899999999999999998542 99999999 7888999999999998886 231 235567788887
Q ss_pred HHHhccccCC-----------------------------------------------------------hHHHHHHHHHH
Q 043341 115 WLDYTPVFSS-----------------------------------------------------------GSEFENACTYV 135 (758)
Q Consensus 115 wl~~~~~~l~-----------------------------------------------------------~~~l~~~L~~L 135 (758)
.+++....+. -+++.+.++.|
T Consensus 110 ~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aL 189 (257)
T KOG3027|consen 110 YVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRAL 189 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHH
Confidence 7765554322 06778889999
Q ss_pred HHhcccCCcccCCCCCHhHHHHHHHHhhhhccc-cc---ccccccChhHHHHHHHHHhh
Q 043341 136 DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW-DS---LRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 136 e~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~-~~---~~~~~~~P~L~rW~~~i~~~ 190 (758)
...|+.++||.|+++|-+|..+|+-+..+.... .. ...+.+|+||.++..++.+.
T Consensus 190 sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 190 SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999988762211 11 12367899999999999876
|
|
| >cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=86.66 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcc-cCCcccCCCCCHhHHHHHHHH
Q 043341 107 YEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLE-RRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~-~~~flvG~~lTlADi~l~~~L 161 (758)
.+|+++.+|+.|+.+.+.+ ..+.+.+..+|..|+ +++||+| .+|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 4677777777776554331 345677888999995 5589999 5999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.++.. .+++ +. |++.+|.++|.++ |+|++.++
T Consensus 81 ~~~~~--~g~~-l~--p~l~ay~~r~~~r--Pa~~~~~~ 112 (114)
T cd03195 81 NRLVL--NGDP-VP--ERLRDYARRQWQR--PSVQAWLA 112 (114)
T ss_pred HHHHH--cCCC-CC--HHHHHHHHHHHCC--HHHHHHHh
Confidence 98633 3333 22 9999999999999 99999874
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=86.26 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccC----------CcccCCCCCHhHHHHHHHHhhhhccccccc-c-cccChhHHHHHHHHHhhccc
Q 043341 126 SEFENACTYVDKYLERR----------TFVVGHSLSIVDIAIWSALAGTGQRWDSLR-K-SKKYQNLVRWFNSLSAEYSD 193 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~----------~flvG~~lTlADi~l~~~L~~l~~~~~~~~-~-~~~~P~L~rW~~~i~~~~~p 193 (758)
..+...++.||++|..+ +||+|+++|+|||++++.+.++........ + ...||+|.+|+++|.++ |
T Consensus 32 ~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aR--p 109 (111)
T cd03204 32 DELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQR--E 109 (111)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcC--C
Confidence 57888999999999865 499999999999999999988632211111 0 35799999999999999 8
Q ss_pred hH
Q 043341 194 SL 195 (758)
Q Consensus 194 ~~ 195 (758)
+|
T Consensus 110 sf 111 (111)
T cd03204 110 SF 111 (111)
T ss_pred CC
Confidence 75
|
More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates. |
| >cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=89.61 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcc--cCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 126 SEFENACTYVDKYLE--RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.+...|+.||+.|+ +++|++|+++|+||+++++.+.++.... ......||+|.+|+++|.++ |+++++++.-
T Consensus 42 ~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~--~~~l~~~P~l~~~~~rv~~~--P~vk~~~~~~ 116 (137)
T cd03208 42 KAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD--PSLLSDFPLLQAFKTRISNL--PTIKKFLQPG 116 (137)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc--hhhhccChHHHHHHHHHHcC--HHHHHHHhcC
Confidence 457889999999998 6789999999999999999998863211 22357899999999999999 9999998763
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS |
| >cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-07 Score=87.92 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhccc---CCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 126 SEFENACTYVDKYLER---RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~---~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+...+..||++|+. ++|++|+++|+||+++++.+.++.... ......+|+|.+|+++|.++ |++++++..
T Consensus 38 ~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~--~~~~~~~P~l~~~~~rv~~~--p~v~~~~~~ 112 (126)
T cd03210 38 KDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA--PGCLDAFPLLKAFVERLSAR--PKLKAYLES 112 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC--hHhhhcChHHHHHHHHHHhC--cHHHHHHhC
Confidence 4578899999999974 589999999999999999988763211 12257899999999999999 999998765
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre |
| >PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=79.08 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 49 DSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 49 s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
||+++|++++++++|++++...+ |+||+|++++|.+++||.+|++||++.
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 78999999999999999987332 999999998999999999999999863
|
... |
| >cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-07 Score=86.96 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHHHHhhhhcccc---cccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWSALAGTGQRWD---SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~~L~~l~~~~~---~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.+.|..||.+|++ ++||+|+++|+||+++++.+.++..... ++.....+|+|.+|+++|.++ |+|++++.
T Consensus 33 ~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~r--ps~~~t~~ 109 (121)
T cd03201 33 QALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSR--ESFVKTKA 109 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCC--chhhhcCC
Confidence 4577788999999985 7999999999999999998766522111 222237899999999999999 99988643
|
DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins. |
| >cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-07 Score=80.51 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
..|++++++|++|+++|++|+...+ |++|+|++ +|.+|+||.+|++||++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~-~~~~i~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLY-NGEVKTDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEE-CCEEecCHHHHHHHHHHHc
Confidence 4678999999999999999998654 99999987 8899999999999999975
|
They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-07 Score=99.74 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=108.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccchH-------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKESN------------------------- 298 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~~~------------------------- 298 (758)
.++.-=.-+|||..||||.|-.+..+..++ ....++|.--||.|+-|.++
T Consensus 24 ~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~ 103 (360)
T PF01921_consen 24 PYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGC 103 (360)
T ss_dssp EEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSS
T ss_pred cEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCC
Confidence 466666688999999999999988888776 34457888889998654332
Q ss_pred ------HHHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHh-CceeccCCchHHHHHHhc----CCC---CCc
Q 043341 299 ------EFVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQ-GKAYVDDTPREQMQKERM----DGI---ESK 362 (758)
Q Consensus 299 ------~~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~-G~aY~~~~~~e~~~~~~~----~~~---~~~ 362 (758)
-|...+.+.|+.|||+++ +++|++... .|.+.+...+++ ..+. +.+.+.+. ..| .-.
T Consensus 104 ~~SyaeH~~~~~~~~L~~~gie~e-~~s~te~Y~sG~y~~~i~~aL~~~~~I~------~Il~~~~~~~~~~~y~Pf~pi 176 (360)
T PF01921_consen 104 HESYAEHFNAPFEEFLDEFGIEYE-FISQTEMYRSGRYDEQIRTALENRDEIR------EILNEYRGRERPETYSPFLPI 176 (360)
T ss_dssp SSCHHHHHHHHHHHHHHTTT---E-EEECCCCCCTTTTHHHHCHHHHTHHHHH------HHHHHHHHHT--TT--SEEEE
T ss_pred CccHHHHHHHHHHHHHHHcCCceE-EEeHHHhhhCCchHHHHHHHHHhHHHHH------HHHHHhcCcCCCCCeeeeeee
Confidence 466788888999999874 334443211 222222222221 1111 11222211 111 011
Q ss_pred CCCCCHHHHHHHHHHHhcCccCCceeeEEe-eecCCCCCCCCCCcEEEEeCCCCCcccCCccc--ccccccccccccccc
Q 043341 363 CRNNSIEENMKLWKEMIAGSERGLECCLRG-KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK--VYPTYDFACPFVDAK 439 (758)
Q Consensus 363 ~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~-k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~--~~PtY~~a~~vdD~~ 439 (758)
|- -|-|+ .+.+.. ...-..-|-|+|...+|.-+-+... |--.|-.--+.-=+.
T Consensus 177 C~-----------------------~cGri~tt~v~~-~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 177 CE-----------------------KCGRIDTTEVTE-YDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp ET-----------------------TTEE--EEEEEE-E--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHH
T ss_pred cc-----------------------ccCCcccceeeE-eecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhh
Confidence 11 01110 010000 0112466888885555533222111 122221111111122
Q ss_pred cCccEEeeCCCCCC---chHHHHHHH-HHhCCCcceEeeeeeeecccc-cccchhhhhhhhcCccCCCCCCCcchHHHHH
Q 043341 440 EGITHALRSSEYHD---RNAQYYRIQ-EDLGVRKVHIYEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514 (758)
Q Consensus 440 ~githvirg~d~~~---~~~~~~~l~-~alg~~~p~~~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddpr~~tl~~l~ 514 (758)
.||+.=--|.||.. +...-..|. +.||.++|....|..+.+.|. |||||+++- .|+++.+
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~---------------~t~~e~L 297 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNG---------------ITPEEWL 297 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES-----------------------------HHHHH
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCc---------------cCHHHHH
Confidence 44554445999998 777777888 889999999888988888776 999999753 4899998
Q ss_pred HcCCCHHHHHHHHHHhccccccccccHH
Q 043341 515 RRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 515 ~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
+- ++||.||.|+..... +....|+++
T Consensus 298 ~~-~~PE~lr~l~~~~~P-~~~~~~~~~ 323 (360)
T PF01921_consen 298 EY-APPESLRYLMARTKP-NKAKDFSFD 323 (360)
T ss_dssp TT-S-HHHHHHHHHCS-T-TS-EEE--S
T ss_pred Hh-cCHHHHHHHHcccCC-CcceEeccC
Confidence 88 799999998877423 334444444
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.4e-07 Score=94.35 Aligned_cols=171 Identities=18% Similarity=0.078 Sum_probs=111.4
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFPD 327 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~~ 327 (758)
.|||.|||||.-+|+.++...+..|.+.++.|.|. +..+...++...+..++.++|++|+ .++.||+..+
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~- 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPE- 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHH-
Confidence 48999999999999999999988899999999887 4556777888899999999999997 4677999874
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcE
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~v 407 (758)
+.+.+- .+.|.++..++... . + |+++. + .. .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~---------~-------fk~~~-----------~--~~-~~~~------- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--T---------G-------FKDKS-----------A--QG-ESVN------- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--c---------c-------hhhhh-----------c--cC-CCCc-------
Confidence 333221 13455554444311 0 0 00000 0 00 0000
Q ss_pred EEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC------CCcceEeee--eeee
Q 043341 408 YYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG------VRKVHIYEF--SRLN 479 (758)
Q Consensus 408 l~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg------~~~p~~~~~--~~l~ 479 (758)
. |..+|-.--+.|=.+.+.++|..|.|...|...-.-+...+| +..|..... .+++
T Consensus 120 -----------~-----g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 -----------I-----GLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred -----------c-----hhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 0 112222212222233456888899999999888888999998 677865544 4443
Q ss_pred -ccc--ccccchhh
Q 043341 480 -MVY--TLLSKRKL 490 (758)
Q Consensus 480 -~~~--~klSKR~~ 490 (758)
+.| .|||||..
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 445 49999974
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=75.02 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+.|++|++++++|+++|++|+...+ |++|+|++ +|..++||.+|++||+++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~-~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLEL-NGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEE-CCEEEcCHHHHHHHHhhC
Confidence 3788999999999999999998654 89999998 789999999999999864
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. |
| >cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.2e-07 Score=74.46 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=46.0
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+..++++.+++++|++.|++|+.+.. |+||+|++ ||.+|+||.||+.||+++
T Consensus 14 ~~~~~~~~kv~~~L~elglpye~~~~~~~~~~~P~GkVP~L~~-dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLPFNVRCRANAEFMSPSGKVPFIRV-GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCCcEEEecCCccccCCCCcccEEEE-CCEEEeCHHHHHHHHhcC
Confidence 46789999999999999999997422 99999998 889999999999999763
|
Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury. |
| >cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor | Back alignment and domain information |
|---|
Probab=98.35 E-value=9e-07 Score=76.42 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
+.|+++++++++|.++|++|+.+.+ |++|+|++++|..|+||.+|++||++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~ 83 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAY 83 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhC
Confidence 5688999999999999999987431 8999998843899999999999999864
|
This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. |
| >cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.2e-07 Score=78.55 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
+.+.+.++.||++|+.++|++|+++|+||+++++.+.++............+|++.+|+++|
T Consensus 39 ~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 39 EELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 57888999999999999999999999999999999998743222211246799999999874
|
In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ |
| >cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=81.97 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
+.+...++.||++|++++|++|+++|+||+++++.+.+... ..+......+|+|.+|+++|.+
T Consensus 61 ~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~-~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 61 ANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI-VSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH-cCcccccccCChHHHHHHHHhc
Confidence 67888999999999999999999999999999999988632 2233335689999999999975
|
This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=73.82 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=44.5
Q ss_pred ccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 45 SFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 45 ~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
....++++++++++|+++|++|+...+ |++|+|++ +|..|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD-GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE-CCEEEEcHHHHHHHhC
Confidence 356789999999999999999987422 99999987 7889999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=75.93 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccc----cccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL----RKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~----~~~~~~P~L~rW~~~i 187 (758)
+.+.+.++.||+.|++++|++|+++|+|||++++.+.++....... .....+|+|.+|+++|
T Consensus 22 ~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~ 87 (88)
T cd03193 22 SLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERI 87 (88)
T ss_pred HHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHh
Confidence 5788899999999999999999999999999999998763211111 1246799999999987
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible |
| >cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=48.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.++++.+++++++++|++|+.... +++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLY--YFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLED-GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEE--eCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 4788 888899999999999999999987432 89999998 6899999999999984
|
In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma |
| >cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-06 Score=77.56 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhc---ccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYL---ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L---~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.+.+..+|..| ++++|++|+ +|+||+++++.+.+... .+.+ ..|+|.+|+++|.++ |++++.++
T Consensus 44 ~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~--~~~~---~~P~l~~~~~rv~~r--Psv~~~~~ 113 (114)
T cd03194 44 ADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT--YGLP---LSPAAQAYVDALLAH--PAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH--cCCC---CCHHHHHHHHHHHCC--HHHHHHHh
Confidence 45566666777666 467899999 99999999999988632 2222 239999999999999 99998765
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-06 Score=102.37 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=73.8
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+++==+|+|||.|||||+++.++.+.+|| ...|.-++.+-.+| +.....++.+.|.+.|+.
T Consensus 34 ~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~ 113 (805)
T PRK00390 34 YYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKS 113 (805)
T ss_pred EEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356666799999999999999999999998 35576666663333 334455789999999999
Q ss_pred hCCCCC--Cccccc--CCHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTS--DYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S--~~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ..++++ +|.+..+.+..+|.++|++|
T Consensus 114 lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 149 (805)
T PRK00390 114 LGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAY 149 (805)
T ss_pred hCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999655 455444 37778899999999999999
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-06 Score=100.84 Aligned_cols=93 Identities=29% Similarity=0.452 Sum_probs=72.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++=-+|+|||.|||||+++.++.+.+|| +..|.-++..-.+| |.....++.+.+.+.|+.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 66667999999999999999999999998 35577777764443 3344557889999999999
Q ss_pred CCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+..| ..+++++ +....+.+..+|.++|++|
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy 146 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAY 146 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeE
Confidence 98655 4554444 5566777788999999999
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-06 Score=95.79 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=66.4
Q ss_pred ccEEeeCCCCCCchHHHHHHHH----HhCCCcceEeeeeeeeccc-ccccchhhhhhhhcCccCCCCCCCcchHHHHHHc
Q 043341 442 ITHALRSSEYHDRNAQYYRIQE----DLGVRKVHIYEFSRLNMVY-TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR 516 (758)
Q Consensus 442 ithvirg~d~~~~~~~~~~l~~----alg~~~p~~~~~~~l~~~~-~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~ 516 (758)
||.=--|+||..+...+.-... -+|+++|....|-.+.+.| +|||||+++ ..++++.++-
T Consensus 230 Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwlev 294 (521)
T COG1384 230 VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWLEV 294 (521)
T ss_pred cccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHHHh
Confidence 3333349999988888776554 4578888777777777776 899999974 3488888887
Q ss_pred CCCHHHHHHHHHHhccccccccccHHH-HHHHHHhhc
Q 043341 517 GLLVEALIQFILEQGASKNLNLMEWDK-LWTINKKII 552 (758)
Q Consensus 517 G~~~eal~~~~~~~g~~~~~~~~d~~~-l~~~n~~~l 552 (758)
+.||.+|.++... --.....||++. |..+.-++.
T Consensus 295 -~~pE~lry~~~r~-kP~r~~~~d~~~~il~lvDEyd 329 (521)
T COG1384 295 -APPEVLRYLIART-KPNRHIDFDFDLGILKLVDEYD 329 (521)
T ss_pred -cCHhHeeeeeeec-CCCcceecCCCCChhHHHHHHH
Confidence 7999999877664 345556666666 555544443
|
|
| >cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-06 Score=76.35 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhcccccccc-cccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK-SKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~-~~~~P~L~rW~~~i 187 (758)
+.+.+.+..||++|.. ++|++|+++|+||+++++.+.++... .... ...||++.+|++++
T Consensus 42 ~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~--~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 42 EAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYL--DPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhh--CchhhHHhChhHHHHHHhC
Confidence 5678899999999987 89999999999999999999886322 1122 56899999999874
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition |
| >KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.2e-05 Score=79.83 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhC---CCCC-CCHHHHHHHHHHH
Q 043341 49 DSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYG-QNAYEAGEIDEWL 116 (758)
Q Consensus 49 s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p-~~~~era~v~~wl 116 (758)
++-|.++.+.+++++.+.+++.. |++|+|++++|..+..-.-|..+|.... .+-. ....+.++...|+
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~a~~ 96 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTLAFM 96 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCCCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHHHHH
Confidence 44688899999999966666543 9999999999999999999999998733 2212 2256778888888
Q ss_pred HhccccCCh------------------------------------------------------------HHHHHHHHHHH
Q 043341 117 DYTPVFSSG------------------------------------------------------------SEFENACTYVD 136 (758)
Q Consensus 117 ~~~~~~l~~------------------------------------------------------------~~l~~~L~~Le 136 (758)
.+....+.+ ....+++..|.
T Consensus 97 sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~~LS 176 (313)
T KOG3028|consen 97 SLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALNLLS 176 (313)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 776665441 34466788999
Q ss_pred HhcccCCcccCCCCCHhHHHHHHHHhhhhcccccc----cccccChhHHHHHHHHHhh
Q 043341 137 KYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL----RKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 137 ~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~----~~~~~~P~L~rW~~~i~~~ 190 (758)
+.|++++|++|+++|--|..+|..+..+....... ..+..++||.++.+++...
T Consensus 177 ~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 177 TLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999842222111 1234489999999999886
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=97.91 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=74.3
Q ss_pred eeeccCCCCCCC-ccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGY-LHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~-lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
+++=-+|.|||. |||||+++.++.+.+|| +..|.-++.+-.+| |.....++++.+.+.|+.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 666667999996 99999999999999998 45677777774444 344556788999999999
Q ss_pred hCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ..+++++ |....+.+..+|.++|++|
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY 228 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAY 228 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 996654 5555544 6677889999999999999
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=98.90 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=71.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecC----------------------CCccc-------chH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDD----------------------TNPAK-------ESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieD----------------------td~~r-------~~~ 298 (758)
+++==||++||.||||||++.++.+.++| ...|..++.+-. ++++. ...
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 55666799999999999999999999998 345666666532 23321 233
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 299 EFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++.+.+.++++.||+ +|+..+++.+ +....+....+|.++|++|
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy 179 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLY 179 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 567899999999999 7777666554 5667888999999999999
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=95.52 Aligned_cols=94 Identities=29% Similarity=0.403 Sum_probs=72.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEE---e-------------cCCCcccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVR---F-------------DDTNPAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilR---i-------------eDtd~~r~~~~~~~~i~~dl~~ 310 (758)
-.++=-=|.|||.||+||+|+..+.+.+|| +.+|.=||- + ..+||..-...+++.+++.|+.
T Consensus 36 fyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~ 115 (814)
T COG0495 36 FYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKS 115 (814)
T ss_pred eEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 366666799999999999999999999998 344555554 2 3568888889999999999999
Q ss_pred hCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ....++| |..-.+-...+|.++|+||
T Consensus 116 lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y 151 (814)
T COG0495 116 LGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAY 151 (814)
T ss_pred hCCccccccceecCCccHHHHHHHHHHHHHHCCCEE
Confidence 998766 3333333 4444556677999999999
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=98.11 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------------cc----------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------------PA---------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------------~~---------- 294 (758)
+++=-||+|||.||||||++-++.+.++| ...|..++..-..| +.
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 66667899999999999999999999998 45577776653222 10
Q ss_pred cchHHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++++.+.++++.||+ +|+..+.+.+ +....+....+|.++|++|
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliy 170 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLY 170 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEe
Confidence 1233578999999999999 5666665554 5566788889999999999
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=70.23 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
..+.+.+..||.+|++++| +++|+|||++++.+.+......+......+|+|.+|+++|
T Consensus 40 ~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 40 GKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 5778899999999998898 8999999999999988633223333357899999999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=97.66 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=72.9
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc---------------------------------ccc
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP---------------------------------AKE 296 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~---------------------------------~r~ 296 (758)
.==||++||.||||||++-++.+.++| ...|..+++.-.+|- ...
T Consensus 107 ~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~ 186 (1205)
T PTZ00427 107 YDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGI 186 (1205)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHH
Confidence 444799999999999999999999998 466888888755541 001
Q ss_pred hHHHHHHHHHHHHHhC--CCCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 SNEFVDNLLKDIETLG--IKYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 ~~~~~~~i~~dl~~LG--i~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
..+|.+.+.+.++.|| ++|+..+++.+ +.+.......+|.++|++|
T Consensus 187 ~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIY 236 (1205)
T PTZ00427 187 VLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVY 236 (1205)
T ss_pred HHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 2256788899999999 78887776655 7778899999999999999
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=97.44 Aligned_cols=93 Identities=25% Similarity=0.387 Sum_probs=73.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc---------c-----------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA---------K----------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~---------r----------------------- 295 (758)
+++==||+|||.||||||++.++.+.+|| ...|.-++.+-.+|-. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 66667899999999999999999999998 4567777777555521 0
Q ss_pred -chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 -ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 -~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..++.+.|.+.|+.||+..| ..+++.+ +....+.+..+|.++|++|
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliy 194 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIY 194 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 124677889999999997655 5555544 6667899999999999999
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=96.61 Aligned_cols=93 Identities=24% Similarity=0.371 Sum_probs=70.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------------cccc-------h
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------------PAKE-------S 297 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------------~~r~-------~ 297 (758)
+++==||++||.||||||++.++-+.++| ...|.-++.+-.+| +... .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 55556799999999999999999999998 34566666653333 2111 2
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 298 NEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 298 ~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
.++++.+.++++.||+ +|+..+++.+ +.........+|.++|++|
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIy 163 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIY 163 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3567788999999999 7877666654 5567888899999999999
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=91.50 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=64.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC-----------------------Ccc-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT-----------------------NPA------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt-----------------------d~~------- 294 (758)
+++==||++||.||+|||++..+-+.+|| ...|..++.. |-+ ..+
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 33445699999999999999999999998 4567766665 211 111
Q ss_pred cchHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++.+.+.++++.||+. |+..+++.+ +.........+|.++|++|
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIy 157 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIY 157 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEE
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEE
Confidence 11336778899999999975 555555544 5667888899999999999
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.9e-05 Score=96.63 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=70.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc---------c-----------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA---------K----------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~---------r----------------------- 295 (758)
+++==||++||.|||||+++.++.+.++| ...|.-++.+-.+|-. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 44445699999999999999999999998 4567777777555411 0
Q ss_pred -chHHHHHHHHHHHHHhCCCCC--Ccccc--cCCHHHHHHHHHHHHHhCcee
Q 043341 296 -ESNEFVDNLLKDIETLGIKYE--TVTYT--SDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 -~~~~~~~~i~~dl~~LGi~~d--~~~~~--S~~~~~~~~~~~~Li~~G~aY 342 (758)
...++.+.|.+.++.||+..| ..+++ .++.+..+....+|.++|++|
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliy 182 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIY 182 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 123567889999999997655 54444 447778899999999999999
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.4e-05 Score=94.27 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=72.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc-----------------------cc--------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA-----------------------KE-------- 296 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~-----------------------r~-------- 296 (758)
+++=-||++||.||||||++..+.+.+|| ...|.-++.+-.+|-. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 66667899999999999999999999998 4568778777555511 00
Q ss_pred -hHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 -SNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 -~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+.++.+.|.+.++.||+..| ..+++.+ +....+....+|.++|++|
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliy 221 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIY 221 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 13567899999999999644 5555544 6667888999999999999
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=95.44 Aligned_cols=93 Identities=24% Similarity=0.366 Sum_probs=72.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc--------------------------c-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP--------------------------A------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~--------------------------~------- 294 (758)
+++==||++||.||||||++.++.+.++| ...|.-++.+-.+|- +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 66777899999999999999999999998 455777777644441 0
Q ss_pred cchHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
.-..++.+.|.+.++.||+..| ..+++++ +....+.+..+|.++|++|
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIy 262 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIY 262 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 0123567889999999996654 5555554 6677889999999999999
|
|
| >cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.5e-05 Score=72.04 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcc-cc--ccc-ccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR-WD--SLR-KSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~-~~--~~~-~~~~~P~L~rW~~~i 187 (758)
....+.|+.|+..|++++||+|+++|.||+++|+.+..+... .. ... ....||||.+|.++|
T Consensus 60 ~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri 125 (126)
T cd03211 60 EEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRI 125 (126)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhc
Confidence 456778999999999999999999999999999998775311 10 111 256899999999987
|
Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury. |
| >cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.7e-05 Score=71.83 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHh-cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKY-LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~-L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
+.|..+++.+=+. ..+++|++|+++|+|||++|+.+..+... ........+|+|.+|+++|.+.
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~-~~~~Dl~~~p~I~~W~eRm~~~ 146 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGH-PAFKDMVEETKIGEWYERMDAA 146 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHh-ccccchhhCcCHHHHHHHHHHH
Confidence 3344444333333 34568999999999999999999876322 2332366899999999999775
|
Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t |
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.6e-05 Score=95.37 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc-----------------c----------------c
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP-----------------A----------------K 295 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~-----------------~----------------r 295 (758)
+.==||++||.+|||||++.++.+.++| ...|..+++.-.+|- . .
T Consensus 42 ~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~ 121 (1159)
T PLN02882 42 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRS 121 (1159)
T ss_pred EeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHH
Confidence 3334699999999999999999999998 456777887744431 0 0
Q ss_pred chHHHHHHHHHHHHHhC--CCCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLG--IKYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LG--i~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...+|.+.+.+.++.|| ++||..|++.+ +.+.......+|.++|++|
T Consensus 122 ~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliy 172 (1159)
T PLN02882 122 IVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVY 172 (1159)
T ss_pred HHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 12357788999999999 77887776655 6778889999999999999
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.1e-05 Score=94.17 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=71.5
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc---------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP---------------------------------A 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~---------------------------------~ 294 (758)
+++==||+|||.||+|||++-.+.+.++| ...|.-+++.-..|- .
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 44555799999999999999999999998 456777777633320 1
Q ss_pred cchHHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++.+.+.+.++.||+ +|+..+++.+ +.+.......+|.++|++|
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliy 175 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLY 175 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1233678899999999994 5666666655 6667788889999999999
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.9e-05 Score=93.88 Aligned_cols=87 Identities=9% Similarity=-0.065 Sum_probs=64.9
Q ss_pred eCCCCCC-chHHHHHHHHHhCCC---cc-eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 447 RSSEYHD-RNAQYYRIQEDLGVR---KV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 447 rg~d~~~-~~~~~~~l~~alg~~---~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
=|.|++. |..... +..++.++ .| .+..++++..+|+|||||+++ +.++.++.++ |+++
T Consensus 579 ~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaD 641 (938)
T TIGR00395 579 SGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGAD 641 (938)
T ss_pred EeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChH
Confidence 3888874 444443 33333333 35 455569999999999999974 3477888888 9999
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 522 ALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 522 al~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
++|.|++..+...++.+|+++.+....+.
T Consensus 642 alRl~Ll~~~~~~~D~~fs~~~~~~~~~~ 670 (938)
T TIGR00395 642 VARLYIADAAETVQDADWKESEVEGTILR 670 (938)
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 99999999888999999999988766543
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.6e-05 Score=70.13 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccccc---c-cccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS---L-RKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~---~-~~~~~~P~L~rW~~~i~~~ 190 (758)
+.....++.|+..|++++|++|+++|.||+++++.+..+...... + ....++|||.+|+++|.+.
T Consensus 67 ~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~ 135 (137)
T cd03212 67 RDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSL 135 (137)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHh
Confidence 456778999999999999999999999999999888765211111 0 1256899999999999865
|
Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=86.99 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=68.9
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc-----------------------c---------chHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA-----------------------K---------ESNE 299 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~-----------------------r---------~~~~ 299 (758)
=|||+||-||||||-+..+-+.++| +..|.-+|=+-.+|-. | -+++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 3699999999999999999999998 4557777766555411 0 0235
Q ss_pred HHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+...|.+.|+.||+..| ..+++.| +....++...+|.++|.+|
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIY 166 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIY 166 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCcee
Confidence 67889999999999866 4445544 5667899999999999999
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=90.76 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=69.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-------------------------ccc-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-------------------------PAK------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-------------------------~~r------- 295 (758)
+++==||++||.||||||++-++-+.++| ...|..++.+-..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 55556799999999999999999999998 34566666553222 111
Q ss_pred chHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...++++.+.++++.||+. |+..+.+.+ +.........+|.++|++|
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliy 187 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLY 187 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1225678899999999997 656666544 5567788899999999999
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00036 Score=76.86 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=53.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCc-------ccchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP-------AKESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~-------~r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
+.|=|.| ||.|||||.-+ +.++..-...|...+.-|.|.-. .....++...+..++-.+|++++ .++.
T Consensus 69 iytG~~P--SG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~ 145 (368)
T PRK12285 69 VYTGFMP--SGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYF 145 (368)
T ss_pred EEEccCC--CCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 5555554 58999999864 54444434456677777766421 12334555557788889999998 5788
Q ss_pred ccCCHHHHHHHHHHH
Q 043341 321 TSDYFPDLMEMAENL 335 (758)
Q Consensus 321 ~S~~~~~~~~~~~~L 335 (758)
||++.+ +++.+-.|
T Consensus 146 qS~~~~-~~~l~~~l 159 (368)
T PRK12285 146 QSENIK-VYDLAFEL 159 (368)
T ss_pred CCchHH-HHHHHHHH
Confidence 999875 55555443
|
|
| >cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00033 Score=58.80 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+.++.|.++.+.|+.+|++|+.+.. |++|+|++ +|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~-~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLT-SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEE-CCEEecChHHHHHHHHHc
Confidence 3567899999999999999998542 99999998 789999999999999764
|
Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. |
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=75.07 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=50.5
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Ccc----cchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NPA----KESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~~----r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++.++..- +.+..++.-|.|. ++. ....+..+.+..++-.+|++++ .++.||+..+
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e 88 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPE 88 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHH
Confidence 588999999999999988776 4566666666552 221 2334555666778888999999 5788999873
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=70.74 Aligned_cols=172 Identities=19% Similarity=0.145 Sum_probs=104.3
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-------Cc-ccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NP-AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-------d~-~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
-|||.|||||--.|+.+|.........++.-|.|. ++ +.....+...+..++=.+||+++ .++.||+..+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 48999999999999999998887666666666553 22 13456777778888888999999 5788999876
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
+.+.+-. +-|..+.-+++. |-. ||-. ...+..
T Consensus 93 -~~eLa~~-------l~~~~~~gel~r------------------------~~~-----------fKdk-~~~~~~---- 124 (314)
T COG0180 93 -HAELAWL-------LSCVTNFGELER------------------------MTQ-----------FKDK-SAKKGE---- 124 (314)
T ss_pred -HHHHHHH-------HHccCcHHHHHh------------------------hcC-----------cchh-hhcccc----
Confidence 5554432 223333222221 100 1100 000000
Q ss_pred EEEEeCCCCCcccCCccccccccccccccccccc-CccEEeeCCCCCCchHHHHHHHHHhC------CCcceEeeee--e
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKE-GITHALRSSEYHDRNAQYYRIQEDLG------VRKVHIYEFS--R 477 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~-githvirg~d~~~~~~~~~~l~~alg------~~~p~~~~~~--~ 477 (758)
.... | --.||.-.- -|.+. .-++|=.|.|-..|...-.-|-+.++ +..|...... +
T Consensus 125 ----~~~~-----G--l~~YPvlqA----ADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~ 189 (314)
T COG0180 125 ----SIPI-----G--LLTYPVLQA----ADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVAR 189 (314)
T ss_pred ----cccc-----c--chhccHHHH----HHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCc
Confidence 0000 0 012333221 24443 44666679999999999888888887 6666544333 4
Q ss_pred ee-ccc-ccccchhhh
Q 043341 478 LN-MVY-TLLSKRKLL 491 (758)
Q Consensus 478 l~-~~~-~klSKR~~~ 491 (758)
++ +.| .|||||..+
T Consensus 190 i~gL~g~~KMSkS~~n 205 (314)
T COG0180 190 LPGLDGPGKMSKSDPN 205 (314)
T ss_pred ccCCCCCCcccccCCC
Confidence 43 567 799999854
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=69.80 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=48.4
Q ss_pred CCCCCccchhhHHHHHHHHHH-cccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFA-QRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~A-r~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++-+|..- ..++.+++.=|.|. |++ ...++......++-.+|++|+ .+++||+..+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 488999999999999988544 45665554545442 222 233455556777788999998 5788999765
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=79.62 Aligned_cols=94 Identities=27% Similarity=0.474 Sum_probs=72.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHccc--CceEEEEe----------------cCCCcccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY--QGQLIVRF----------------DDTNPAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~--~G~~ilRi----------------eDtd~~r~~~~~~~~i~~dl~~ 310 (758)
++|.--=|.|+|-|||||.|-..+++.+||-| +|.-|+.- ..++|..-..+-++.+++-|..
T Consensus 59 KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~ 138 (876)
T KOG0435|consen 59 KYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKS 138 (876)
T ss_pred ceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHH
Confidence 46666679999999999999999999999954 46666553 2455666666788999999999
Q ss_pred hCCCCC---Cccc-ccCCHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE---TVTY-TSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d---~~~~-~S~~~~~~~~~~~~Li~~G~aY 342 (758)
||+.+| ++.. ..||+.--+-+.-+|.++|+||
T Consensus 139 lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAY 174 (876)
T KOG0435|consen 139 LGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAY 174 (876)
T ss_pred cCcccccccccccCCcchhHHHHHHHHHHHHhhhhh
Confidence 998755 4433 3556665566778999999999
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0018 Score=81.06 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=46.5
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHH
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKL 544 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l 544 (758)
+..++++...|+|||||+++. .++.++.++ |++|++|.+++..+....+.+|+++.+
T Consensus 706 v~v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~ 762 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETA 762 (1084)
T ss_pred EEEccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHH
Confidence 556689999999999999743 366677777 999999999998877778889988743
|
|
| >PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0061 Score=54.87 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHH
Q 043341 105 NAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~ 159 (758)
|..+|+..++.-.|..+.+.+ ....+.+...+..|.. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 345677777766666666552 5667788888888875 5999995 9999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
++.++...... -.+.+..|.++.-++ |++++-+.
T Consensus 80 ml~Rl~~~gd~-----vP~~l~~Ya~~qwqr--psVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVTYGDP-----VPERLADYAERQWQR--PSVQRWLA 113 (117)
T ss_dssp HHHHHHTTT---------HHHHHHHHHHHT---HHHHHHHH
T ss_pred HHHHHHHcCCC-----CCHHHHHHHHHHHCC--HHHHHHHH
Confidence 99987332222 236789999999999 99988654
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0043 Score=67.69 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=96.0
Q ss_pred CCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----C--cccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----N--PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d--~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
=.|||.+||||.- ++.++..-...|...++=|.|. + ...........+..++..+|++++ .++.||+..+
T Consensus 37 ~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~ 115 (329)
T PRK08560 37 FEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQL 115 (329)
T ss_pred cCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhc
Confidence 4577999999966 5665555444566666667553 1 123344566678888889999998 5778888754
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.. ++...+..-+ |.++..++.... .. .+ | . .
T Consensus 116 ~~-~~~~~~~~l~----~~~~~~~l~r~~---------------------~~-----~~-----~--~---~-------- 146 (329)
T PRK08560 116 DK-EYWLLVLKLA----KNTTLARARRSM---------------------TI-----MG-----R--R---M-------- 146 (329)
T ss_pred cc-hHHHHHHHHH----hhccHHHHHHhh---------------------hh-----hc-----c--c---C--------
Confidence 32 1222222211 222222222100 00 00 0 0 0
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccc--
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYT-- 483 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~-- 483 (758)
+. ...|- -.||.- -+.|=.+.+.++|.-|.|...|...-.-+.+.+|...|......+| .+.|.
T Consensus 147 -----~~---~~~g~--l~YP~l---qaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~ 213 (329)
T PRK08560 147 -----EE---PDVSK--LVYPLM---QVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGI 213 (329)
T ss_pred -----CC---CCHHH--HHHHHH---HHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCC
Confidence 00 00000 123433 2233334578899999998877777777778899888865555444 35565
Q ss_pred cccchh
Q 043341 484 LLSKRK 489 (758)
Q Consensus 484 klSKR~ 489 (758)
|||||.
T Consensus 214 KMSKS~ 219 (329)
T PRK08560 214 KMSKSK 219 (329)
T ss_pred CCcCCC
Confidence 999997
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0039 Score=53.08 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=50.9
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+.++|| +.+.+++|.+++.+|+..|++|+...+ ..+|++.+ ||..|.++..|..||+
T Consensus 8 ~~V~ly--~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i-~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVF--TKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI-GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEE--ECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE-CCEEEcCHHHHHHHhC
Confidence 447888 889999999999999999999998654 68999988 8899999999999984
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0039 Score=66.22 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=36.5
Q ss_pred cCccEEeeCCCCCCchHHHHHHHHHhC-CCcceEeeeeee-ecccccccchhh
Q 043341 440 EGITHALRSSEYHDRNAQYYRIQEDLG-VRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 440 ~githvirg~d~~~~~~~~~~l~~alg-~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
.+.++++-|.|-..|...=.-+.+.++ ...|.-....+| .+.|.|||||..
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~ 204 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSES 204 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCC
Confidence 456888999998877777666777775 566754444443 356889999984
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0029 Score=74.12 Aligned_cols=93 Identities=23% Similarity=0.364 Sum_probs=69.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCCccc----------------------c---------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTNPAK----------------------E--------- 296 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd~~r----------------------~--------- 296 (758)
++.==|||.||-||||||-+..+-+.+||. ..|+-++=+-.+|-.- .
T Consensus 78 ~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw 157 (995)
T KOG0432|consen 78 VIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVW 157 (995)
T ss_pred eeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHH
Confidence 444457999999999999999999999984 4577777776555210 0
Q ss_pred --hHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 --SNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 --~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+.++-..|.+.|+.||-. |+..+++-| .-....+.+.+|-++|.+|
T Consensus 158 ~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIy 209 (995)
T KOG0432|consen 158 EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIY 209 (995)
T ss_pred HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceE
Confidence 124457789999999976 555556544 4456888999999999999
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.004 Score=77.16 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=6.0
Q ss_pred cccccccCccEE
Q 043341 434 PFVDAKEGITHA 445 (758)
Q Consensus 434 ~vdD~~~githv 445 (758)
++|=|..|.+++
T Consensus 573 P~D~~~~GkDii 584 (938)
T TIGR00395 573 PLDWRISGKDLI 584 (938)
T ss_pred CceEEEEeeccc
Confidence 344455555543
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0075 Score=63.98 Aligned_cols=52 Identities=17% Similarity=0.034 Sum_probs=40.4
Q ss_pred cCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhhh
Q 043341 440 EGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKLL 491 (758)
Q Consensus 440 ~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~~ 491 (758)
.+.++++.|.|...|...-.-+.+.++...|....+..| .+.|.|||||..+
T Consensus 150 l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~ 202 (269)
T cd00805 150 LDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGN 202 (269)
T ss_pred HhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCC
Confidence 345888999999988888888888899887755555555 4678899999843
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.015 Score=64.45 Aligned_cols=69 Identities=26% Similarity=0.453 Sum_probs=47.5
Q ss_pred CCCC-CccchhhHHHHHHHHHHcccCceEEEEecCC----C---cccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSG-YLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N---PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d---~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
.||| .|||||+-.+.+.-.+-+..+...++-|.|- . ...+..++......++..+|++++ .++.++++.
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH
Confidence 4788 5999999999876667767777777778761 1 112333455667777888999998 344455555
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0042 Score=66.74 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----C----cccchHHHHHHHHHH--HHHhCCCCC--CcccccC
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----N----PAKESNEFVDNLLKD--IETLGIKYE--TVTYTSD 323 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d----~~r~~~~~~~~i~~d--l~~LGi~~d--~~~~~S~ 323 (758)
.|||.|||||.-+... ...-...|...+.=|.|. | +.+......+.+.++ +-.+|++++ .++.||+
T Consensus 13 ~PTg~lHlG~l~~~~~-~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIMK-LIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHHH-HHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHHH-HHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 4889999998877654 333333777777777542 2 233444555555555 678899997 6788998
Q ss_pred CHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCC
Q 043341 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSL 403 (758)
Q Consensus 324 ~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~ 403 (758)
..+.. ++...|...+... +...+.. +..+.. |++. .....+
T Consensus 92 ~~~~~-~~~~~l~~~~~~~----~l~~~~~---------------------~~~~~~----------~~~~---~~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVARLF----SLNRMLR---------------------FKDVKK----------RLKN---GEGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHBHH----HHHHHHH---------------------HHHHHH----------HHSS---TTTSBH
T ss_pred ccccc-chhhhhccccccc----chhhhhh---------------------hccccc----------cccc---ccCcce
Confidence 76554 5555544444321 1111111 000000 0000 000000
Q ss_pred CCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC----cceEeeeeeee
Q 043341 404 RDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR----KVHIYEFSRLN 479 (758)
Q Consensus 404 ~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~----~p~~~~~~~l~ 479 (758)
.. -.||.-+ +.|=...+.++++.|.|...|...-.-+.+.+|.. .|.......|+
T Consensus 133 ~~------------------~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 GE------------------FSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp HH------------------HHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ee------------------EEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 00 1244321 22333455668899999988887777788888887 78666565555
Q ss_pred -cccc-cccchhhh
Q 043341 480 -MVYT-LLSKRKLL 491 (758)
Q Consensus 480 -~~~~-klSKR~~~ 491 (758)
+.|+ |||||..+
T Consensus 192 ~l~G~~KMSKS~~n 205 (292)
T PF00579_consen 192 GLDGQKKMSKSDPN 205 (292)
T ss_dssp STTSSSBTTTTTTG
T ss_pred ccCCccccCccCCc
Confidence 4577 99999965
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=71.07 Aligned_cols=88 Identities=5% Similarity=-0.084 Sum_probs=63.8
Q ss_pred eeCCCCCC-chHHHHHHHHHhCC---Ccc-eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH
Q 043341 446 LRSSEYHD-RNAQYYRIQEDLGV---RKV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV 520 (758)
Q Consensus 446 irg~d~~~-~~~~~~~l~~alg~---~~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ 520 (758)
+=|.|+.. |...+ .+..+..+ +.| .+..++++..+|+|||||+++ ..+..++.++ |++
T Consensus 535 ~~GkDii~~Hl~~~-~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GN---------------vVdp~eii~~-yGa 597 (897)
T PRK12300 535 HSGKDLIPNHLTFF-IFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGN---------------VIPLRKAIEE-YGA 597 (897)
T ss_pred EeeeccCccHHHHH-HHHHHHhcCCCccCcEEEEcceEEECCccccCcCCC---------------CCCHHHHHHH-cCh
Confidence 34777764 33433 33333333 245 566679998999999999974 3366777877 999
Q ss_pred HHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
|++|.|++..+....+.+|+.+.+...-+.
T Consensus 598 DalRl~L~~~~~~~~D~~fs~~~v~~~~~~ 627 (897)
T PRK12300 598 DVVRLYLTSSAELLQDADWREKEVESVRRQ 627 (897)
T ss_pred HHHHHHHHhCCCCCCCCccCHHHHHHHHHH
Confidence 999999999888899999999887665443
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.022 Score=47.29 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=48.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
++|| +.+.+++|.+++-+|...|++|+...+ ..+|++.+ ||..+.++..|.+||+
T Consensus 3 v~ly--s~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi-~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLF--TKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFI-DGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEE-CCEEEeCHHHHHHHhC
Confidence 5777 888999999999999999999987554 57999988 8899999999999974
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.032 Score=47.83 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=47.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
++|| +.+.+++|.+++.+|..+|++|+.+.+ .++|++.+ ||..|-+...+..+-.
T Consensus 4 v~ly--~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~-~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIY--TKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI-DAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEeCHHHHHHHHH
Confidence 6788 888999999999999999999988654 68999988 8889988888877654
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.032 Score=62.66 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=35.5
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
+++.++-|.|...|...=.-+.+.+|...|.......| ...|+|||||..
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~ 236 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAG 236 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCC
Confidence 67778889998877777777778888877633322222 445789999974
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.089 Score=58.47 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=34.6
Q ss_pred ccCccEEeeCCCCCCchHHHHHHHHHhCC-CcceEeeeeeee-c-cc-ccccchhh
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLN-M-VY-TLLSKRKL 490 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~~alg~-~~p~~~~~~~l~-~-~~-~klSKR~~ 490 (758)
..+.+++.-|.|...+...-.-+...+|. ..|...+..+|+ + .| .|||||..
T Consensus 208 ~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ 263 (383)
T PTZ00126 208 YLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDP 263 (383)
T ss_pred ccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCC
Confidence 45678888899976555555666778885 456554445554 4 23 59999984
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.038 Score=68.37 Aligned_cols=96 Identities=10% Similarity=-0.053 Sum_probs=66.1
Q ss_pred ccEEeeCCCCCC-chHHHHHHHHHh-CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQEDL-GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~al-g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++..+-|.|++. ......+..-++ |..+| .++.|+++.. .|+|||||+++ ..+..++.++
T Consensus 565 ~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGN---------------vI~p~d~i~~- 628 (861)
T TIGR00392 565 ADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGN---------------VVDPLKVINK- 628 (861)
T ss_pred ceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCC---------------CCCHHHHHHH-
Confidence 344445777753 222222222222 54444 5666788764 79999999974 3366777777
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
|++|++|.|++.. ...++..|+++.+...++.+...
T Consensus 629 yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~ 664 (861)
T TIGR00392 629 YGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKI 664 (861)
T ss_pred cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHH
Confidence 9999999999988 78899999999998877655554
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.058 Score=60.62 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=42.4
Q ss_pred CCCCC-ccchhhHHHHHHHHHHcccCceEEEEecC----C-Ccc-c----------chHHHHHHHHHHHHHhCCCCCC--
Q 043341 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIVRFDD----T-NPA-K----------ESNEFVDNLLKDIETLGIKYET-- 317 (758)
Q Consensus 257 ~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilRieD----t-d~~-r----------~~~~~~~~i~~dl~~LGi~~d~-- 317 (758)
-|||. |||||.-+ +..+..-...|...+.=|-| + ||. + ...++.+.|.+-+ ..|++++.
T Consensus 41 dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~ql-~~~ld~~k~~ 118 (408)
T PRK05912 41 DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKEQL-FKFLDFEKDG 118 (408)
T ss_pred cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHHHH-HHhcCcCcCc
Confidence 47895 99999884 55555445555555555544 2 343 1 2234455555544 77888875
Q ss_pred --cccccCCHHH
Q 043341 318 --VTYTSDYFPD 327 (758)
Q Consensus 318 --~~~~S~~~~~ 327 (758)
++.+|+..+.
T Consensus 119 ~~i~~nsd~~~~ 130 (408)
T PRK05912 119 AEIVNNSDWLGK 130 (408)
T ss_pred EEEEECCCcCCc
Confidence 6788887653
|
|
| >PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.057 Score=45.15 Aligned_cols=48 Identities=31% Similarity=0.410 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHhcCCC---eeeeec--------CCccEEEeCCCcEEechHHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGIT---IPTETS--------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~---~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
.++-|.++.+.+++++.+ |+++.. |++|+|...++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 567889999999999999 888764 999999987889999999999998
|
In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.032 Score=67.66 Aligned_cols=88 Identities=25% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCC-------------------------cc----cc---hHHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTN-------------------------PA----KE---SNEF 300 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd-------------------------~~----r~---~~~~ 300 (758)
||..||.+|||||.+=++-+.+-|. ..|..+-|.-.-| .+ .| ..++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 4999999999999999999988873 3455555542111 11 11 2257
Q ss_pred HHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 301 VDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 301 ~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++...++.+.||+- |+.+|.+-+ +++....+..+|.++|++|
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGlly 182 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLY 182 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCee
Confidence 78899999999986 556666544 7778888999999999999
|
|
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.084 Score=58.45 Aligned_cols=74 Identities=19% Similarity=0.106 Sum_probs=50.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----C--cccchHHHHHHHHHHHHHhCCCCC--Ccccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N--PAKESNEFVDNLLKDIETLGIKYE--TVTYT 321 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d--~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~ 321 (758)
|.+=|- |||.+||||.-.++-+|.--.. +.+++.=|.|. + ......+....+..++-.+|++++ .++.|
T Consensus 49 v~sGiq--PSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~Q 125 (389)
T PLN02886 49 VVSGVQ--PTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQ 125 (389)
T ss_pred EEEEEC--CCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEe
Confidence 556555 6799999999988887765543 44544555542 1 122334555667778888999998 67889
Q ss_pred cCCHH
Q 043341 322 SDYFP 326 (758)
Q Consensus 322 S~~~~ 326 (758)
|+..+
T Consensus 126 S~v~e 130 (389)
T PLN02886 126 SHVPA 130 (389)
T ss_pred CCCch
Confidence 98544
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.036 Score=68.58 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=58.2
Q ss_pred ccchhhHHHHHHHHHHc--ccCceEEEEecCCC----c------------------------------------ccchHH
Q 043341 262 LHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----P------------------------------------AKESNE 299 (758)
Q Consensus 262 lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----~------------------------------------~r~~~~ 299 (758)
|||||+++.++.+.+|| ...|.-+++.-..| | ......
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999998 34577676642111 1 111224
Q ss_pred HHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|.+.+.++++.||+..| ..+.+.+ |....+....+|.++|++|
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliy 127 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIV 127 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEe
Confidence 55889999999998654 5555544 5566778889999999999
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.074 Score=66.48 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=53.2
Q ss_pred eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.++.|+++.. .|+|||||+++ ..+..++.++ |++|++|.|+++.+...++..|+++.+....+
T Consensus 578 ~v~~hG~Vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 578 NVLVHGHVLDEDGQKMSKSLGN---------------YVDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred EEEEeeeEECCCCCCcCCCCCC---------------cCCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 5667777664 78999999974 3366777777 99999999999987778999999999555555
Q ss_pred hhccc
Q 043341 550 KIIDP 554 (758)
Q Consensus 550 ~~l~~ 554 (758)
..+.+
T Consensus 642 ~~l~k 646 (975)
T PRK06039 642 KFLLT 646 (975)
T ss_pred HHHHH
Confidence 55554
|
|
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=60.34 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Ccc-----cchHHHHHHHHHHHHHhCCCCC--CcccccCC
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NPA-----KESNEFVDNLLKDIETLGIKYE--TVTYTSDY 324 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~~-----r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~ 324 (758)
=.|||.|||||..-..++.....+.|...++=|.|. ++. +........+..++..+|++++ .+++||+.
T Consensus 39 i~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~ 118 (682)
T PTZ00348 39 FEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEE 118 (682)
T ss_pred eCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHh
Confidence 458899999994221333333345566666666553 221 1122223467778889999998 57889984
Q ss_pred H
Q 043341 325 F 325 (758)
Q Consensus 325 ~ 325 (758)
+
T Consensus 119 i 119 (682)
T PTZ00348 119 I 119 (682)
T ss_pred h
Confidence 4
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.15 Score=41.61 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=43.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEE--echHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKL--QGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l--~ES~aIl~yL 95 (758)
++|| +.+.+++|.+++.++...|++|....+ ..+|+|.+ +|..+ +++.+|-.+|
T Consensus 2 i~lf--~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVY--TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEE--cCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-CCEEEeeCCHHHHHHHh
Confidence 5777 888999999999999999999887543 68999998 67777 5666665554
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS) | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.26 Score=45.07 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHhc--CCCeeeeecCCccEEE-eCCCcEEechHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhccccCC-----h
Q 043341 54 LVIAAAKLA--GITIPTETSGSAPTFS-FSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSS-----G 125 (758)
Q Consensus 54 ~v~i~l~~~--gl~~~~~~~g~vP~L~-~~~g~~l~ES~aIl~yL~~~~~L~p~~~~era~v~~wl~~~~~~l~-----~ 125 (758)
++-+++++. ++.++..+....|.|. ..+|+.|+|++||++|++.-|.-......+.+ +.-....+. .
T Consensus 14 KlalA~~~~~~~lk~~v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~es~e~e~a-----~~~lE~~ly~k~~~~ 88 (122)
T PF09635_consen 14 KLALALEYAQKDLKLEVNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQESIEYEFA-----LSSLENVLYHKSNKK 88 (122)
T ss_dssp HHHHHHHH--STT--EE-SS--S--EEE-S--S----HHHHHHHHTT--TTTTSHHHHHH-----HHHTTTGGGSSS--H
T ss_pred HHHHHHHHhCCCCeeeeCCccccceeeecCCceEEecccHHHHHHHhhcCCcchHHHHHH-----HHHHHHHHhcccccH
Confidence 455555554 5666665556678884 45899999999999999987621222222222 222223222 2
Q ss_pred HHHHHHHH-HHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 126 SEFENACT-YVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 126 ~~l~~~L~-~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+.+..+.. .++++|.. ..+.+|.++|.+|..+
T Consensus 89 e~v~~~~~k~l~~yl~~----~~e~lsAt~lIlFAn~ 121 (122)
T PF09635_consen 89 EHVESAVNKSLDNYLTS----LKEPLSATQLILFANV 121 (122)
T ss_dssp HHHHHHHHHHHHHT-S-------SS--HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhh----hcCCCCHHHheeeeec
Confidence 45554444 56666532 3567899999998865
|
This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A. |
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.1 Score=65.55 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=51.4
Q ss_pred eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.++.|+++.. .|+|||||+++. ....++.++ |++|++|.|++..+....+..|+++.+...+
T Consensus 524 ~V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~- 586 (1052)
T PRK14900 524 TVYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGYR- 586 (1052)
T ss_pred eeEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHHH-
Confidence 5777888877 899999999642 244566666 8999999999988778899999999876543
Q ss_pred hhccc
Q 043341 550 KIIDP 554 (758)
Q Consensus 550 ~~l~~ 554 (758)
+.++.
T Consensus 587 ~f~nk 591 (1052)
T PRK14900 587 AFANK 591 (1052)
T ss_pred HHHHH
Confidence 34443
|
|
| >PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=47.64 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++..|..|+..|.......| ++|+.||.+|+.|+.+ ....++ .--|+|.+|+++|.+.
T Consensus 62 ~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L-tivkgi---~~P~~V~~Y~~~~s~~ 121 (132)
T PF04399_consen 62 AELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL-TIVKGI---QWPPKVRAYMDRMSKA 121 (132)
T ss_dssp HHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH-CTCTTS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh-hhccCC---cCCHHHHHHHHHHHHH
Confidence 6788889999999886666555 8999999999999986 334443 2347899999999886
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A. |
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=65.30 Aligned_cols=9 Identities=56% Similarity=0.885 Sum_probs=6.5
Q ss_pred CCCCCCCcc
Q 043341 500 DGWDDPRFP 508 (758)
Q Consensus 500 ~gwddpr~~ 508 (758)
++++|-++.
T Consensus 750 ~~~~D~nF~ 758 (1084)
T PLN02959 750 DGVDDANFV 758 (1084)
T ss_pred CccCCCCcc
Confidence 577888774
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.12 Score=56.53 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----C---cccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N---PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d---~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++.++..-...+..+++ |.|. + ...+..++...+..++-.+|++++ .++.||+..+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e 87 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPE 87 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchH
Confidence 367999999999999998554444444444 4331 1 122334556667777888999998 5778999855
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.15 Score=63.71 Aligned_cols=85 Identities=11% Similarity=-0.085 Sum_probs=56.9
Q ss_pred eeCCCCC-CchHHHHHHHHHh-CCCc-ceEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHc-----
Q 043341 446 LRSSEYH-DRNAQYYRIQEDL-GVRK-VHIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR----- 516 (758)
Q Consensus 446 irg~d~~-~~~~~~~~l~~al-g~~~-p~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~----- 516 (758)
+=|.|.+ +.-....|...++ |..+ -.+|.|+++.. .|+|||||+++. .+..++.+.
T Consensus 569 ~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~ 633 (974)
T PLN02843 569 LEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQK 633 (974)
T ss_pred eeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccc
Confidence 3377765 2334444443333 5432 36788887655 799999999743 245556652
Q ss_pred ---CCCHHHHHHHHHHhccccccccccHHHHHH
Q 043341 517 ---GLLVEALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 517 ---G~~~eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
-|+++++|.|+++ ..+.++..|+.+.|..
T Consensus 634 ~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~ 665 (974)
T PLN02843 634 QEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQ 665 (974)
T ss_pred cccccChHHHHHHHHh-cccCCCceeCHHHHHH
Confidence 2899999999987 4778899999887763
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.084 Score=65.74 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=54.5
Q ss_pred eEeeeeeee-cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLN-MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~-~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.+|.|+++. ..|+|||||+++ ..+..++.++ |+++++|.|++.. .+.++..|+++.|.. |+
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-ygaDalR~~l~~~-~~~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGN---------------VIDPLDTIKE-FGTDALRFTLALG-TAGQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCC---------------CCCHHHHHHh-cCChHHHHHHHhC-CCCCCccccHHHHHH-HH
Confidence 688888775 689999999974 3356677777 9999999999885 568999999999876 67
Q ss_pred hhccccCC
Q 043341 550 KIIDPVCP 557 (758)
Q Consensus 550 ~~l~~~~~ 557 (758)
+.++.+-+
T Consensus 631 ~~~~kl~N 638 (958)
T PLN02943 631 AFTNKLWN 638 (958)
T ss_pred HHHHHHHH
Confidence 76665433
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.13 Score=56.90 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Cc---ccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NP---AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~---~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
.|||.+||||.-+++-+|.- .+.++.++.=|.|. ++ .....+....+..++-.+|++++ .++.||+.-
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~ 86 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVP 86 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCch
Confidence 48899999999998877663 34466655556552 22 23344556667888889999998 678899974
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.21 Score=42.76 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=38.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEE
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l 85 (758)
|.++|| +.+.+++|.+++-+|..+|++|+...+ ..+|+++. ++..+
T Consensus 1 ~~v~lY--t~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~~~ 61 (81)
T PRK10329 1 MRITIY--TRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-GDLSW 61 (81)
T ss_pred CEEEEE--eCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 346888 888999999999999999999988654 68999998 55544
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.3 Score=40.58 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=42.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLL 92 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl 92 (758)
++|| +.+.++.|.+++.+|..+|++|+...+ ..+|++.. ||..|-+-..+.
T Consensus 3 v~ly--~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i-~~~~iGg~~~~~ 69 (73)
T cd03027 3 VTIY--SRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF-NEKLVGGLTDLK 69 (73)
T ss_pred EEEE--ecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEeCHHHHH
Confidence 5778 888999999999999999999998654 68999988 777776655544
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.42 Score=41.05 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHh-----cCCCeeeeec--------------C----CccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKL-----AGITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~-----~gl~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|.+++| +.+.+++|.+++-+|.. .|++|+...+ + .+|++.+ ||..+.+...|..
T Consensus 1 m~v~iy--~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi-~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIF--GRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV-DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEE--eCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE-CCEEEcCHHHHHH
Confidence 557888 88899999999999988 7898887432 3 6999988 8999999999999
Q ss_pred HHHHhC
Q 043341 94 YIGRVG 99 (758)
Q Consensus 94 yL~~~~ 99 (758)
++.+.+
T Consensus 78 ~~~~~~ 83 (85)
T PRK11200 78 YVKENL 83 (85)
T ss_pred HHHHhc
Confidence 987754
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.24 Score=61.55 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=58.4
Q ss_pred ccEEeeCCCCCC-chHHHHHHHH-HhCCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQE-DLGVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~-alg~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
.+..+-|.|++. .-....|.-- ..|..++ .++.|+++.. .|+|||||+++.. +...+.++
T Consensus 546 ~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvI---------------dP~~ii~~- 609 (912)
T PRK05743 546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVI---------------DPQDVIKK- 609 (912)
T ss_pred ceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcC---------------CHHHHHHh-
Confidence 333444777762 1112222222 2355544 4566787764 8999999997533 45567776
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHH
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
|++|++|.|++. +...++..|+.+.|..
T Consensus 610 yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 610 YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 999999999997 6778899999988765
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.21 Score=55.79 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCCCCccchhhHHHHHHHHHHcc-cCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQR-YQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~-~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++-||.-... .+..++.=|-| .||++. .+....+..++-.+|++|+ .+++||+.-+
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~l-r~~~~e~aa~~LA~GlDPek~~if~QSdvpe 88 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARI-QRSTLEIAATWLAAGLDPERVTFYRQSDIPE 88 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHH-HHHHHHHHHHHHHhCCCccceEEEECCcchh
Confidence 58999999999999988877753 34455554544 244333 3444557777888999998 6788999653
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.4 Score=39.76 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=46.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------C-CccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------G-SAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g-~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
++|| +.+.+++|.+++.+|...|++|+...+ . .+|++.+ +|..+.+...+.++-
T Consensus 2 i~ly--~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i-~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIY--TKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI-GDVHIGGCDDLYALE 72 (75)
T ss_pred EEEE--eCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE-CCEEEeChHHHHHHH
Confidence 4677 888999999999999999999998654 2 8999998 888899988888764
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.4 Score=38.71 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=44.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
+++| +.+.++.|.+++.++..++++|+...+ .++|++.. +|..+.++..|.+.
T Consensus 2 v~ly--~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~-~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVF--SKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI-NGEFIGGYDDLKAL 70 (72)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEecHHHHHHh
Confidence 4677 788899999999999999999887543 58999988 88999998887754
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.23 Score=41.16 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTY 89 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~ 89 (758)
++|| +.+.+++|.+++..+...|++|+...+ ..+|+++.++|..+.++.
T Consensus 2 v~ly--~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVY--GTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 5677 888999999999999999999887543 689999888888876543
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.28 Score=58.24 Aligned_cols=83 Identities=10% Similarity=-0.078 Sum_probs=49.7
Q ss_pred ccEEeeCCCCCCchHHHHH-HHHHhCCC--cceEeeeeeee-cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHDRNAQYYR-IQEDLGVR--KVHIYEFSRLN-MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~~~~~~~~-l~~alg~~--~p~~~~~~~l~-~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++-.+-|.|++..--.... +.-++--. ...+..++++. ..|+|||||+++. .+...+.++
T Consensus 515 ~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv---------------i~p~~ii~~- 578 (601)
T PF00133_consen 515 VDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNV---------------IDPEDIIEK- 578 (601)
T ss_dssp BSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH-
T ss_pred cccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcc---------------cCHHHHHHH-
Confidence 4555668887744333333 33344322 34667777765 5799999999753 377788888
Q ss_pred CCHHHHHHHHHHhcccccccccc
Q 043341 518 LLVEALIQFILEQGASKNLNLME 540 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d 540 (758)
|+.|++|.|++..+-...+.+||
T Consensus 579 yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 579 YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred hCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999765655555553
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.91 Score=51.00 Aligned_cols=30 Identities=23% Similarity=0.670 Sum_probs=24.9
Q ss_pred eeeecc-CCCCCCCccchhhHHHHHHHHHHc
Q 043341 249 KVRLRF-APEPSGYLHIGHSKAALLNQYFAQ 278 (758)
Q Consensus 249 ~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar 278 (758)
++|+-| .||-.-++|+||.|+-+++-..|+
T Consensus 111 ~iVVefSSPNIAK~FHvGhLRsTiiG~flan 141 (567)
T KOG1195|consen 111 KIVVEFSSPNIAKPFHVGHLRSTIIGNFLAN 141 (567)
T ss_pred eEEEEecCCCcccccccchhhhhhhhhHhhh
Confidence 455555 689999999999999999888884
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.3 Score=53.51 Aligned_cols=69 Identities=28% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Cc--ccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NP--AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-.++-++..-.. ....++=|.|. ++ .....+....+..++-.+|++++ .++.||+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~-~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~ 85 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQD-EYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE 85 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHh-cCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch
Confidence 48899999999988776542222 13333334431 21 22334555667777778999998 5778998654
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.35 Score=60.39 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=56.1
Q ss_pred eeCCCCCCchHHHHHHHHHh---CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH
Q 043341 446 LRSSEYHDRNAQYYRIQEDL---GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV 520 (758)
Q Consensus 446 irg~d~~~~~~~~~~l~~al---g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ 520 (758)
+=|.|.+. .=-|..++.++ |..++ .++.|+++.. .|+|||||+++.. ....+.+. |++
T Consensus 588 ~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvI---------------dP~~ii~~-yGa 650 (961)
T PRK13804 588 LEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTV---------------SPQDVIKQ-SGA 650 (961)
T ss_pred EEEccccc-HHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcC---------------CHHHHHHh-cCH
Confidence 34677642 11222344444 33333 6778888775 8999999996432 44566666 999
Q ss_pred HHHHHHHHHhccccccccccHHHHHH
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
|++|.|+++ +...++..|+++.|..
T Consensus 651 D~lRl~lls-~~~~~D~~fs~~~l~~ 675 (961)
T PRK13804 651 DILRLWVAS-VDYSDDQRIGKEILKQ 675 (961)
T ss_pred HHHHHHHHh-CCCCCCcccCHHHHHH
Confidence 999999997 4678899999987655
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.49 Score=38.44 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~E 87 (758)
+++| +...+++|.+++.++...|++|+...+ +.+|++.+ +|..+.+
T Consensus 2 v~l~--~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~~~~i~g 63 (73)
T cd02976 2 VTVY--TKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI-GDEHLSG 63 (73)
T ss_pred EEEE--eCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-CCEEEec
Confidence 4677 778899999999999999999887543 68999998 6666654
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.47 Score=44.20 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++..|..|+..+..... ++.++|+.||.+|+.|+.+ ....++ .--|+|.+|+++|++.
T Consensus 63 ~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~L-t~vkgi---~~P~~V~~Y~~~~s~~ 122 (128)
T cd03199 63 AALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNL-TLVKGL---VFPPKVKAYLERMSAL 122 (128)
T ss_pred HHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhh-hhhcCC---CCCHHHHHHHHHHHHH
Confidence 5678888888888854444 4558999999999999986 333433 2347899999999886
|
coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.33 Score=59.54 Aligned_cols=87 Identities=11% Similarity=-0.017 Sum_probs=59.1
Q ss_pred cCccEEeeCCCCCCc-----hHHHHHHHHHhC---CCcc--eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 440 EGITHALRSSEYHDR-----NAQYYRIQEDLG---VRKV--HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 440 ~githvirg~d~~~~-----~~~~~~l~~alg---~~~p--~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
+-++..+-|.||... .--+. ++..+| -..| .+++++++ |||||+++ ..+
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~-~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN---------------~i~ 580 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTK-VLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGN---------------VVD 580 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH-HHHHhhcccCCcchhhheecCcE-----EeCCCCCC---------------CCC
Confidence 345666667776533 22221 222223 1234 45556676 99999974 347
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
..++.++ |+++++|.|++..+..+++.+|+.+.+....
T Consensus 581 p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~ 618 (805)
T PRK00390 581 PDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGAY 618 (805)
T ss_pred HHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHHH
Confidence 7888887 9999999999998899999999988877653
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.5 Score=39.14 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=36.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEE
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l 85 (758)
++|| +.+.++.|.+++-+|+..|++|+...+ ..+|++.++|+..+
T Consensus 1 v~ly--~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~ 60 (72)
T TIGR02194 1 ITVY--SKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSW 60 (72)
T ss_pred CEEE--eCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEE
Confidence 3677 888999999999999999999998654 48999998443333
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.06 E-value=4 Score=45.02 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=36.5
Q ss_pred CCccccCeeeecc-CCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEe
Q 043341 242 LPDAEIGKVRLRF-APEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRF 288 (758)
Q Consensus 242 ~~~~~~~~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRi 288 (758)
+|......|++-| .||----||+||+|+-++++.++|. +-|.=+||.
T Consensus 182 ~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~ 231 (656)
T KOG4426|consen 182 LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRR 231 (656)
T ss_pred CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEee
Confidence 4444445566766 5777889999999999999999994 567777886
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.13 Score=61.99 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=62.1
Q ss_pred ccCccEEeeCCCCCCchHHHHHHH-HHh---C-CC--cc--eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcc
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQ-EDL---G-VR--KV--HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFP 508 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~-~al---g-~~--~p--~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~ 508 (758)
-+.|+-=|-|.||..+.=.+.-+. ++| | |+ .| ....-|++-. .|+|||||+++ ..
T Consensus 524 W~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN---------------~v 588 (814)
T COG0495 524 WYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN---------------VV 588 (814)
T ss_pred ccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCC---------------CC
Confidence 334555555777765443333222 222 2 32 23 2334477777 68999999964 33
Q ss_pred hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 509 TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 509 tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
++..+.+. |++|++|.|++..|...++..++-+.+..+.|
T Consensus 589 ~p~~~i~~-yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r 628 (814)
T COG0495 589 DPEEAVEK-YGADTVRLYIMFAAPPEQDLEWSESGVEGARR 628 (814)
T ss_pred CHHHHHHH-hCchHHHHHHHhhCChhhCCCCChhhhHHHHH
Confidence 67788888 99999999999998888888887766655544
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.63 Score=59.09 Aligned_cols=70 Identities=7% Similarity=0.025 Sum_probs=49.4
Q ss_pred CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc-cccccccHH
Q 043341 466 GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS-KNLNLMEWD 542 (758)
Q Consensus 466 g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~-~~~~~~d~~ 542 (758)
|..++ .++.|+++.. .|+|||||+++.. ....+.++ |++|++|.|+++.... ..+..|+++
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNvI---------------dP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNYP---------------DPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCCC---------------CHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 55555 4555688877 6999999997432 33456666 8999999999876443 455789888
Q ss_pred HHHHHHHhh
Q 043341 543 KLWTINKKI 551 (758)
Q Consensus 543 ~l~~~n~~~ 551 (758)
.+....++.
T Consensus 658 ~v~~~~~~~ 666 (1159)
T PLN02882 658 GVFGVVKDV 666 (1159)
T ss_pred HHHHHHHHH
Confidence 877654443
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.73 Score=58.54 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=60.2
Q ss_pred cEEeeCCCCC-CchHHHHHHHHHhCCCcc--eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCC
Q 043341 443 THALRSSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 443 thvirg~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~ 518 (758)
+.++=|.|.+ +.-.....+--++--..| .++.||++-- .|+|||||+++.. || ..+.++ |
T Consensus 675 D~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvI----------DP-----~evI~k-Y 738 (1205)
T PTZ00427 675 DFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYP----------DP-----LYILDK-Y 738 (1205)
T ss_pred eEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCC----------CH-----HHHHHh-c
Confidence 3344466654 233333333333332344 5666787764 7999999997432 33 345555 8
Q ss_pred CHHHHHHHHHHhcc-ccccccccHHHHHHHHHhhcc
Q 043341 519 LVEALIQFILEQGA-SKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 519 ~~eal~~~~~~~g~-~~~~~~~d~~~l~~~n~~~l~ 553 (758)
++|++|.|+++.+. ...+..|+.+.+....++.+.
T Consensus 739 GADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~ 774 (1205)
T PTZ00427 739 GADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFIL 774 (1205)
T ss_pred CCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHH
Confidence 99999999998644 357889999988766666554
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.2 Score=49.71 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCCCCC-CccchhhHHHHH-HHHHHcccC-----ceEEEEecCC-Cc-----ccchHHHHHHHHHHHHHhCCCCC---Cc
Q 043341 255 APEPSG-YLHIGHSKAALL-NQYFAQRYQ-----GQLIVRFDDT-NP-----AKESNEFVDNLLKDIETLGIKYE---TV 318 (758)
Q Consensus 255 aP~PtG-~lHiGhar~al~-n~~~Ar~~~-----G~~ilRieDt-d~-----~r~~~~~~~~i~~dl~~LGi~~d---~~ 318 (758)
--.||| .|||||+-.... .++-.-++. |.+.-.|.|= -+ ....+.+.+.+....+.+|...| .+
T Consensus 38 GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~ 117 (401)
T COG0162 38 GFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEF 117 (401)
T ss_pred eeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEE
Confidence 356899 999999988753 333333333 3333444443 11 11223445666666777886666 56
Q ss_pred ccccCCHHHHHHHHHHHHHhCcee
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY 342 (758)
.+.|+.+..+. +.+-|.+-|.-|
T Consensus 118 v~ns~w~~~~~-y~~~l~~~g~~~ 140 (401)
T COG0162 118 VNNSDWLKKLN-YLDFLRDVGKHF 140 (401)
T ss_pred EechHHhCcCC-HHHHHHHHHhHc
Confidence 67777665432 344444444433
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.1 Score=37.65 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=45.6
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
++| +.+.+++|..++-.++..|++|+...+ ..+|++.+ +|..+.+...+..+..+
T Consensus 2 ~ly--~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i-~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 2 TIY--TKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI-GDVHVGGCDDLYALDRE 72 (79)
T ss_pred EEE--ecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE-CCEEEcChHHHHHHHHc
Confidence 567 788899999999999999999998654 57999988 88888888777766543
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.93 E-value=1 Score=54.49 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=57.8
Q ss_pred cEEeeCCCCC-CchHHHHHHHHHhCCCcc--eEeeeeee-ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCC
Q 043341 443 THALRSSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSRL-NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 443 thvirg~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~l-~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~ 518 (758)
+..+.|-|.+ .-..+...+--+|.-+.| .++.|+.+ .-.|+|||||+++-. || -++.++ |
T Consensus 480 ~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-y 543 (877)
T COG0525 480 DLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-Y 543 (877)
T ss_pred ccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-h
Confidence 3344566655 345555544455655566 33344443 345889999997533 33 345566 8
Q ss_pred CHHHHHHHHHHhccccccccccHHHHH
Q 043341 519 LVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 519 ~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
+.||+|.++...+..-.+..||++++.
T Consensus 544 GaDAlRf~la~~~~~G~Di~~~~~~~~ 570 (877)
T COG0525 544 GADALRFTLASLASPGRDINFDEKRVE 570 (877)
T ss_pred ChHHHHHHHHhccCCCcccCcCHHHHH
Confidence 999999999988777889999998766
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.71 Score=56.90 Aligned_cols=49 Identities=22% Similarity=0.012 Sum_probs=41.5
Q ss_pred cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
|||||+++ ..++.++.++ |+++++|.|++..+..+.+.+|+.+.+....
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~ 652 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGAR 652 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHHH
Confidence 99999974 4478888888 9999999999988888999999988886543
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription] | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.92 Score=46.12 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 129 ~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
...++.++.+|.+++|.-|.+++-+|+.+|..+.-- +....+++..+||+.+.+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e-------p~s~~~v~~~~w~~~l~a~ 64 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE-------PQSARLVNAERWYSKLEAL 64 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC-------cchhhhhHHHHHHHHHHHH
Confidence 567899999999999999999999999999987642 1245789999999999776
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.9 Score=36.70 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=41.9
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
..++| ..+.+|+|.++.-+|..+|++|+...+ .+||++.+ ||..+.....+-.+
T Consensus 2 ~v~iy--t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i-~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIY--TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI-GGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEE--ECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE-CCEEEeCcccHHHH
Confidence 35778 888899999999999999999998433 68999999 66666554444443
|
|
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.6 Score=51.26 Aligned_cols=86 Identities=19% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCccchhhHHHHHHHH-----HHcccCceEEEEecCCC--------------------ccc-------chHHHHHHHH
Q 043341 258 PSGYLHIGHSKAALLNQY-----FAQRYQGQLIVRFDDTN--------------------PAK-------ESNEFVDNLL 305 (758)
Q Consensus 258 PtG~lHiGhar~al~n~~-----~Ar~~~G~~ilRieDtd--------------------~~r-------~~~~~~~~i~ 305 (758)
.+|.||+|||+.-++.+. +|.+++..|+.-.|.-- |-+ ...++++..+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~ 145 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 799999999999987544 44444433433332110 100 1225667777
Q ss_pred HHHHHhCCCCC--Cccc--ccCCHHHHHHHHHHHHHhCceec
Q 043341 306 KDIETLGIKYE--TVTY--TSDYFPDLMEMAENLIRQGKAYV 343 (758)
Q Consensus 306 ~dl~~LGi~~d--~~~~--~S~~~~~~~~~~~~Li~~G~aY~ 343 (758)
+..+.+||.-| .+|. +.+|.-.-.++..+|.++|++|.
T Consensus 146 e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR 187 (937)
T KOG0433|consen 146 EAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187 (937)
T ss_pred HHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceec
Confidence 88888999755 4444 44566667788899999999994
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.70 E-value=0.62 Score=50.92 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCCCccccCeeeeccCCCCCCCccchhhHHHHH-HHHHHcccC--ceEEEEecCCC----------------cccchHH
Q 043341 239 EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALL-NQYFAQRYQ--GQLIVRFDDTN----------------PAKESNE 299 (758)
Q Consensus 239 ~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~-n~~~Ar~~~--G~~ilRieDtd----------------~~r~~~~ 299 (758)
..|.|+. .+.++|---|..+.-.|+||.-..++ .+.+||-+. |.--++|-.|| |...-++
T Consensus 7 ilp~~n~-rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdK 85 (567)
T KOG1247|consen 7 ILPAPNE-RNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDK 85 (567)
T ss_pred cccCCCc-cceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHh
Confidence 3455654 45699999999999999999887755 578888544 55667776666 3333345
Q ss_pred HHHHHHHHHHHhCCCCCCccccc--CCHHHHHHHHHHHHHhCc
Q 043341 300 FVDNLLKDIETLGIKYETVTYTS--DYFPDLMEMAENLIRQGK 340 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~ 340 (758)
|-.......+|++|++|+.-+.| ...++-+++..+|.++|+
T Consensus 86 yh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~ 128 (567)
T KOG1247|consen 86 YHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGY 128 (567)
T ss_pred cchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCC
Confidence 55666777899999999665543 356788999999988874
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=85.31 E-value=4.1 Score=35.08 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=45.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcC-----CCeeeeec--------------C----CccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAG-----ITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~g-----l~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
.++| +.+.+|+|.+++-+|...+ ++|+...+ | .||++.+ ||..+-++..|..++
T Consensus 2 V~vy--s~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi-~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIF--GRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV-DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEE--eCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE-CCEEecCHHHHHHHH
Confidence 3677 8889999999999998885 45554221 3 7999988 889999999999998
Q ss_pred HHhC
Q 043341 96 GRVG 99 (758)
Q Consensus 96 ~~~~ 99 (758)
.+.+
T Consensus 79 ~~~~ 82 (86)
T TIGR02183 79 KENF 82 (86)
T ss_pred Hhcc
Confidence 7754
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.8 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=36.1
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEE
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l 85 (758)
++| +.+.++.|.+++-.|...|++|+...+ ..+|++.. ||..|
T Consensus 2 ~vy--~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g~~I 60 (60)
T PF00462_consen 2 VVY--TKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DGKFI 60 (60)
T ss_dssp EEE--ESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TTEEE
T ss_pred EEE--EcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE-CCEEC
Confidence 566 778899999999999999999998654 78999998 77653
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >cd02156 nt_trans nucleotidyl transferase superfamily | Back alignment and domain information |
|---|
Probab=83.58 E-value=1.9 Score=38.67 Aligned_cols=39 Identities=49% Similarity=0.776 Sum_probs=28.6
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCccc
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAK 295 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r 295 (758)
+.|+.++ |++|+||...+-. . .....+.++.|.+.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~--a--~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR--A--KGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH--H--HHhCCcEEEEEcCCCccc
Confidence 5688999 9999999997433 2 222367889998877654
|
nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 758 | ||||
| 2rd2_A | 556 | Glutaminyl-Trna Synthetase Mutant C229r With Bound | 5e-81 | ||
| 1euq_A | 548 | Crystal Structure Of Glutaminyl-Trna Synthetase Com | 5e-80 | ||
| 1o0b_A | 554 | Crystal Structure Of L-Glutamine And Ampcpp Bound T | 5e-80 | ||
| 1gsg_P | 553 | Structure Of E.Coli Glutaminyl-Trna Synthetase Comp | 5e-80 | ||
| 1nyl_A | 539 | Unliganded Glutaminyl-Trna Synthetase Length = 539 | 5e-80 | ||
| 1qru_A | 553 | Glutaminyl-Trna Synthetase Mutant I129t Complexed W | 8e-80 | ||
| 1qrs_A | 553 | Glutaminyl-Trna Synthetase Mutant D235n Complexed W | 2e-79 | ||
| 1qrt_A | 553 | Glutaminyl-Trna Synthetase Mutant D235g Complexed W | 3e-79 | ||
| 2hz7_A | 851 | Crystal Structure Of The Glutaminyl-Trna Synthetase | 3e-63 | ||
| 3aii_A | 553 | Archaeal Non-Discriminating Glutamyl-Trna Synthetas | 1e-49 | ||
| 2o5r_A | 481 | Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec | 3e-15 | ||
| 3afh_A | 488 | Crystal Structure Of Thermotoga Maritima Nondiscrim | 1e-14 | ||
| 3akz_B | 487 | Crystal Structure Of Thermotoga Maritima Nondiscrim | 2e-14 | ||
| 3al0_C | 592 | Crystal Structure Of The Glutamine Transamidosome F | 3e-14 | ||
| 1g59_A | 468 | Glutamyl-Trna Synthetase Complexed With Trna(Glu). | 4e-12 | ||
| 2cfo_A | 492 | Non-discriminating Glutamyl-trna Synthetase From Th | 6e-12 | ||
| 4g6z_A | 490 | Crystal Structure Of A Glutamyl-Trna Synthetase Glu | 8e-12 | ||
| 1j09_A | 468 | Crystal Structure Of Thermus Thermophilus Glutamyl- | 1e-11 | ||
| 4gri_A | 512 | Crystal Structure Of A Glutamyl-Trna Synthetase Glu | 5e-11 | ||
| 3pny_A | 505 | Structure Of Glutamyl-Trna Synthetase From Mycobact | 6e-09 | ||
| 3pnv_A | 505 | V369m Mutant Of Glutamyl-Trna Synthetase From Mycob | 6e-09 | ||
| 2ja2_A | 498 | Mycobacterium Tuberculosis Glutamyl-Trna Synthetase | 7e-09 | ||
| 1nzj_A | 298 | Crystal Structure And Activity Studies Of Escherich | 3e-07 | ||
| 2uz8_A | 174 | The Crystal Structure Of P18, Human Translation Elo | 3e-04 |
| >pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog 5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine Length = 556 | Back alignment and structure |
|
| >pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed With A Trna- Gln Mutant And An Active-Site Inhibitor Length = 548 | Back alignment and structure |
|
| >pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To Glutamine Aminoacyl Trna Synthetase Length = 554 | Back alignment and structure |
|
| >pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed With Trnagln And Atp At 2.8 Angstroms Resolution Length = 553 | Back alignment and structure |
|
| >pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase Length = 539 | Back alignment and structure |
|
| >pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With Glutamine Transfer Rna Length = 553 | Back alignment and structure |
|
| >pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With Glutamine Transfer Rna Length = 553 | Back alignment and structure |
|
| >pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With Glutamine Transfer Rna Length = 553 | Back alignment and structure |
|
| >pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From Deinococcus Radiodurans Length = 851 | Back alignment and structure |
|
| >pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 553 | Back alignment and structure |
|
| >pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351) From Thermotoga Maritima At 2.5 A Resolution Length = 481 | Back alignment and structure |
|
| >pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp Analog Length = 488 | Back alignment and structure |
|
| >pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With Trnagln And A Glutamyl-Amp Analog Length = 487 | Back alignment and structure |
|
| >pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 592 | Back alignment and structure |
|
| >pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu). Length = 468 | Back alignment and structure |
|
| >pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From Thermosynechococcus Elongatus In Complex With Glu Length = 492 | Back alignment and structure |
|
| >pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Burkholderia Thailandensis Bound To L-Glutamate Length = 490 | Back alignment and structure |
|
| >pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna Synthetase Complexed With Atp And Glu Length = 468 | Back alignment and structure |
|
| >pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound To Glutamic Acid And Zinc Length = 512 | Back alignment and structure |
|
| >pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis In Space Group P21 Length = 505 | Back alignment and structure |
|
| >pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis Length = 505 | Back alignment and structure |
|
| >pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase Length = 498 | Back alignment and structure |
|
| >pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli Yadb Orf Length = 298 | Back alignment and structure |
|
| >pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation Factor 1 Epsilon 1 Length = 174 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 758 | |||
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 0.0 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 1e-140 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 1e-123 | |
| 2hra_A | 209 | Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l | 1e-24 | |
| 2uz8_A | 174 | Eukaryotic translation elongation factor 1 epsilon | 4e-24 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 1e-21 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 2e-21 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 3e-21 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 4e-21 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 5e-21 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 2e-19 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 2e-19 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 2e-19 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 1nhy_A | 219 | EF-1-gamma 1, elongation factor 1-gamma 1; protein | 2e-07 | |
| 3ein_A | 209 | GST class-theta, glutathione S-transferase 1-1; de | 2e-07 | |
| 4exj_A | 238 | Uncharacterized protein; transferase-like protein, | 3e-07 | |
| 2cvd_A | 198 | Glutathione-requiring prostaglandin D synthase; gl | 1e-06 | |
| 4g9h_A | 211 | Glutathione S-transferase; GST, enzyme function in | 3e-06 | |
| 1pn9_A | 209 | GST class-delta, glutathione S-transferase 1-6; pr | 3e-06 | |
| 1zl9_A | 207 | GST class-sigma, glutathione S-transferase 5; glut | 4e-06 | |
| 1v2a_A | 210 | Glutathione transferase GST1-6; glutathione S-tran | 4e-06 | |
| 2ws2_A | 204 | NU-class GST, glutathione S-transferase; parasite, | 6e-06 | |
| 3gx0_A | 215 | GST-like protein YFCG; transferase, glutathione, g | 7e-06 | |
| 1r5a_A | 218 | Glutathione transferase; glutathione S-transferase | 8e-06 | |
| 3ibh_A | 233 | GST-II, saccharomyces cerevisiae GTT2; glutathione | 9e-06 | |
| 2on7_A | 206 | Nagst-1, Na glutathione S-transferase 1; hookworm; | 1e-05 | |
| 3ik7_A | 222 | Glutathione S-transferase A4; human GST A4-4, enzy | 1e-05 | |
| 1n2a_A | 201 | Glutathione S-transferase; HET: GTS; 1.90A {Escher | 1e-05 | |
| 3ay8_A | 216 | Glutathione S-transferase; GST fold, GST binding, | 2e-05 | |
| 1pmt_A | 203 | PMGST, GST B1-1, glutathione transferase; glutathi | 2e-05 | |
| 2on5_A | 206 | Nagst-2, Na glutathione S-transferase 2; hookworm; | 2e-05 | |
| 1axd_A | 209 | Glutathione S-transferase I; transferase, herbicid | 3e-05 | |
| 1gnw_A | 211 | Glutathione S-transferase; herbicide detoxificatio | 4e-05 | |
| 1dug_A | 234 | Chimera of glutathione S-transferase-synthetic lin | 5e-05 | |
| 2fhe_A | 216 | GST, glutathione S-transferase; transferase-substr | 5e-05 | |
| 2gsq_A | 202 | Squid GST, glutathione S-transferase; squid digest | 5e-05 | |
| 1okt_A | 211 | Glutathione S-transferase; GST; 1.9A {Plasmodium f | 5e-05 | |
| 1bg5_A | 254 | MAB, fusion protein of alpha-Na,K-ATPase with glut | 5e-05 | |
| 3gtu_B | 224 | Glutathione S-transferase; conjugation, detoxifica | 5e-05 | |
| 2c4j_A | 218 | Glutathione S-transferase MU 2; glutathione transf | 5e-05 | |
| 1b8x_A | 280 | Protein (AML-1B); nuclear matrix targeting signal | 6e-05 | |
| 1tw9_A | 206 | Glutathione S-transferase 2; 1.71A {Heligmosomoide | 7e-05 | |
| 2hnl_A | 225 | Glutathione S-transferase 1; prostaglandin synthas | 7e-05 | |
| 1vf1_A | 229 | Glutathione S-transferase 3; detoxification; HET: | 7e-05 | |
| 3m8n_A | 225 | Possible glutathione S-transferase; PSI-II, struct | 1e-04 | |
| 3c8e_A | 288 | YGHU, glutathione S-transferase homologue; glutath | 1e-04 | |
| 1m0u_A | 249 | GST2 gene product; flight muscle protein, sigma, t | 1e-04 | |
| 2a2r_A | 210 | Glutathione S-transferase P; detoxification, nitri | 1e-04 | |
| 3m3m_A | 210 | Glutathione S-transferase; PSI-II, structural geno | 1e-04 | |
| 1oe8_A | 211 | Glutathione S-transferase; schistosomiasis, detoxi | 1e-04 | |
| 3iso_A | 218 | Putative glutathione transferase; GST; HET: GSH; 1 | 1e-04 | |
| 1yq1_A | 208 | Glutathione S-transferase; nematoda, structural ge | 1e-04 | |
| 1gsu_A | 219 | GST, CGSTM1-1, class-MU glutathione S-transferase; | 2e-04 | |
| 1ljr_A | 244 | HGST T2-2, glutathione S-transferase; HET: GSH; 3. | 2e-04 | |
| 2c3n_A | 247 | Glutathione S-transferase theta 1; glutathione tra | 2e-04 | |
| 3f6d_A | 219 | Adgstd4-4, glutathione transferase GST1-4; HET: GT | 2e-04 | |
| 1tu7_A | 208 | Glutathione S-transferase 2; HET: GSH; 1.50A {Onch | 2e-04 | |
| 2ycd_A | 230 | Glutathione S-transferase; SOIL bacteria, herbicid | 3e-04 | |
| 1f2e_A | 201 | Glutathione S-transferase; GST complexed with glut | 3e-04 | |
| 2wb9_A | 211 | Glutathione transferase sigma class; thioredoxin f | 3e-04 | |
| 3lsz_A | 225 | Glutathione S-transferase; xenobiotic, biodegradat | 3e-04 | |
| 1aw9_A | 216 | Glutathione S-transferase III; herbicide detoxific | 4e-04 | |
| 1k3y_A | 221 | GSTA1-1, glutathione S-transferase A1; S-hexyl glu | 4e-04 | |
| 1b48_A | 221 | GST, mgsta4-4, protein (glutathione S-transferase) | 4e-04 | |
| 3lxz_A | 229 | Glutathione S-transferase family protein; structur | 4e-04 | |
| 2x64_A | 207 | Glutathione-S-transferase; detoxification enzyme; | 4e-04 | |
| 3m0f_A | 213 | Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu | 5e-04 | |
| 3qav_A | 243 | RHO-class glutathione S-transferase; cytosol; 2.10 | 5e-04 | |
| 3h1n_A | 252 | Probable glutathione S-transferase; APC84167, bord | 8e-04 |
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 | Back alignment and structure |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 146/604 (24%), Positives = 250/604 (41%), Gaps = 71/604 (11%)
Query: 146 VGHSLSIVDIAIWSALAGTGQ--RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYV 203
V H A+ A+ R + + + + V NSLS E
Sbjct: 17 VKHRGRANPGAVMGAVMSNEPELRKMAPQVKEAVEAAVERVNSLSPE------------E 64
Query: 204 SNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLH 263
+ + + ++ +Q + + +L + G+V LRFAP PSG LH
Sbjct: 65 QQQEMERLGLEITERKQKKRKGL-------------RELAGVK-GEVVLRFAPNPSGPLH 110
Query: 264 IGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSD 323
IGH++AA+LN +A++Y G+LI+R +DT+P + E D + D+E LG++++ SD
Sbjct: 111 IGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSD 170
Query: 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSE 383
E E LI +G AYV E+ ++ + G CR+ EN++ W+EM E
Sbjct: 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKE 230
Query: 384 RGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGIT 443
G +R K D+ PN ++RD V R H R G++Y+VYP +F+ D G+T
Sbjct: 231 -G-SAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVT 288
Query: 444 HALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWD 503
H LR ++ + + LG + RL M LS + G+ GWD
Sbjct: 289 HVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWD 348
Query: 504 DPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 563
DPR T++ I RRG+ EA+ + ++E G + M W K++ +N+ I++ R+
Sbjct: 349 DPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA 408
Query: 564 EDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLM 623
+ V L + P P P H + G + +++ D + L+
Sbjct: 409 DP--VKLEVVGLPG-PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDL----GEGPLRLI 461
Query: 624 DWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLIT 683
D N I +E + + + W+P + ++ D
Sbjct: 462 DAVNVIYSGGELRYHSEG--------IEEARELGASMIHWVPAE-SALEAEVIMPDASRV 512
Query: 684 KKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
+ + +++ L+ +++QLER G+ R D + V
Sbjct: 513 R----------------------GVIEADASELEVDDVVQLERFGFARLD---SAGPGMV 547
Query: 744 VLFA 747
+A
Sbjct: 548 FYYA 551
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-140
Identities = 181/526 (34%), Positives = 278/526 (52%), Gaps = 29/526 (5%)
Query: 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEF 300
DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP KE E+
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 301 VDNLLKDIETLGIKYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD-- 357
V+++ D+E LG + V Y+SDYF L A LI +G AYVD+ EQ+++ R
Sbjct: 78 VESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLT 137
Query: 358 --GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIP 415
G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV YR
Sbjct: 138 QPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAE 197
Query: 416 HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYE 474
HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y + +++ + YE
Sbjct: 198 HHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYE 257
Query: 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534
FSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F G +K
Sbjct: 258 FSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTK 317
Query: 535 NLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAG 594
N +E L + ++ ++ PR AVI+ V L + + + + +P H G
Sbjct: 318 QDNTIEMASLESCIREDLNENAPRAMAVIDP--VKLVIENYQGEGEMVTMPNHPNKPEMG 375
Query: 595 EKATTYTKRIWIDHADAQL--------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSG 646
+ ++ IWID AD + + +E+ L + + + +D +GN+T +
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFC 435
Query: 647 FLHLEGSVKNT----KLK--LTWLPETNEL---VNLTLVGFDYLITKKKLEEGEDFLDVL 697
+ K+ K+K + W+ + L + L +D L + +DFL V+
Sbjct: 436 TYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL----YDRLFSVPNPGAADDFLSVI 491
Query: 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
NP + + ++++ G+ Q ER+GYF D + + KPV
Sbjct: 492 NPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 | Back alignment and structure |
|---|
Score = 388 bits (998), Expect = e-123
Identities = 167/605 (27%), Positives = 246/605 (40%), Gaps = 77/605 (12%)
Query: 210 KPTAAKSKEQQGVKGDVSEKGKAGSRPSF-----EVDLPDAEIGKVRLRFAPEPSGYLHI 264
+ G P+F E DL + +V RF P+PSGY H+
Sbjct: 22 TRMTDAPRPTAGADAPARPPAAPLVAPNFITEIIERDLEAGKYPRVVTRFPPDPSGYAHL 81
Query: 265 GHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSD 323
GH A+LL+ A++Y GQ +R DDTNP E+VD++ D++ LG+ + Y SD
Sbjct: 82 GHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHFYYASD 141
Query: 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMI 379
YF AE LIRQG AYV+ E++ + R G S R+ S+EEN+ L + M
Sbjct: 142 YFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMK 201
Query: 380 AGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAK 439
AG E LR K+D+ PN LRDPV YR PH R ++ +YP YDF P DA
Sbjct: 202 AGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAI 261
Query: 440 EGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 498
EG+TH++ S E+ D A Y + E L + H YEF R + YT+ SKRKL VQ G+
Sbjct: 262 EGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRELVQAGR 321
Query: 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
V GWDDPR PT++ R G+ EA+ F + G S+ ++ + ++ PR
Sbjct: 322 VSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNHRAPR 381
Query: 559 HTAVIEDRRVLLT----------------LTDGPDKPFVRIIPRHKKYEGAGEKATTYTK 602
AV++ +V LT + V + + + T+
Sbjct: 382 VMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTR 441
Query: 603 RIWIDHADAQL--------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSV 654
++I+ D ++ + L G + D+ G VT + L G
Sbjct: 442 ELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFGTDEAGQVTHI--RATLLGED 499
Query: 655 KNTKLKLTWLPETNEL---VNLTLVGFDYLITKK-------------------------- 685
+ W+ L L +D L
Sbjct: 500 AKAAGVIHWVSAERALPAEFRL----YDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAG 555
Query: 686 --KLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPF-----TR 738
+ F+ L P + + ++ Q ER+GYF D +R
Sbjct: 556 QETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRDPVELERVDSR 615
Query: 739 SSKPV 743
V
Sbjct: 616 EDALV 620
|
| >2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A Length = 209 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-24
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 24/203 (11%)
Query: 37 MTMEIKVLSFPADSP--PLLVIAAAKLAG------ITIPTETSGSAPTFSFSNGSKLQGT 88
+ M L+ +P + AA++ I I AP + ++
Sbjct: 17 IKMPST-LTINGKAPIVAYAELIAARIVNALAPNSIAIKLVDDKKAPAAKLDDATE---- 71
Query: 89 YVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEF---ENACTYVDKYLERRTFV 145
+ I N + ++ +W++ F + +D L RTF+
Sbjct: 72 -DVFNKITSKFAAIFDNG-DKEQVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFI 129
Query: 146 VGH-SLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVTATY 202
+G S D+A W AL G S+ K+K N+ RW+ L + ++ D ++ +
Sbjct: 130 LGGLKYSAADVACWGALRSNGM-CGSIIKNKVDVNVSRWYTLLEMDPIFGEAHDFLSKSL 188
Query: 203 VSNRGLGKPTAAKSKEQQGVKGD 225
+ + K KE +
Sbjct: 189 LELK--KSANVGKKKETHKANFE 209
|
| >2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} Length = 174 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-24
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 55 VIAAAKLAGITIPTETS----GSAPTFSFSNGSKLQGTYVLLRYIGRV---GNFYGQNAY 107
+ K G++ + S P +NG L G + ++ + G A
Sbjct: 7 LSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGSTAE 66
Query: 108 EAGEIDEWLDYTPVFSSGSEFEN----ACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163
E + +WL+Y G +N ++ YLE + ++ G++ ++ DI ++ L
Sbjct: 67 EKAMVQQWLEYRVTQVDGHSSKNDIHTLLMDLNSYLEDKVYLTGYNFTLADILLYYGLHR 126
Query: 164 TGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVT 199
+++ +KY N+ RWF + L V
Sbjct: 127 FIVDLT-VQEKEKYLNVSRWFCHIQHYPGIRQHLSSVV 163
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Length = 498 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-21
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 48/228 (21%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RF P P+G H+G + AL N +A+ G + R +DT+ ++S E LL +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 65
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTP------REQMQ 352
LG+ + E Y P ++ ++ L+ G+AY TP
Sbjct: 66 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAG 125
Query: 353 KERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------P 399
+ G ++ R+ + + E G + +R L D
Sbjct: 126 RNPKLGYDNFDRHLTDAQRAAYLAE-------GRQPVVRLRMPDDDLAWNDLVRGPVTFA 178
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
S+ D R + G P Y P DA ITH LR
Sbjct: 179 AGSVPDFALTRAS-------GD-----PLYTLVNPCDDALMKITHVLR 214
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-21
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 310 TLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPRE-QMQKERMDG 358
LG+ Y E + P L + AE L+++G AY +TP E + ++ G
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD--------PNKSLR 404
+ + RN EE + + G +R G +++D N+ +
Sbjct: 122 YDGRARNIPPEEAEERARR-------GEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
D V + + G YPTY A D G+T +R+ E+
Sbjct: 175 DVVLLKSD-------G-----YPTYHLANVVDDHLMGVTDVIRAEEW 209
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Length = 490 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-21
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 234 SRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP 293
+ P + VR RFAP P+G++H+G+ ++AL FA++ +G ++R +DT+
Sbjct: 10 GTLEAQTQGPGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDV 69
Query: 294 AKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY-VDDTP---- 347
+ S E VD +L+ + LG+ Y E Y E+ + +G Y +
Sbjct: 70 ERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELD 129
Query: 348 --RE-QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD 398
RE Q + R + + G+ LR G + D
Sbjct: 130 ALRERQRAAGEKPRYDGTWRPEPGKV--------LPEPPAGVAPVLRFRNPLTGTVAWDD 181
Query: 399 --------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
N+ L D V R + G+ P Y+F D GITH +R
Sbjct: 182 AVKGRVEISNEELDDLVVARPD-------GT-----PMYNFCVVVDDLDMGITHVIR 226
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-21
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+R AP P+G LHIG ++ A+ N +A+ G+ I+R +DT+ + E+ +N+L+ ++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 310 TLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY--------VDDTPREQMQKERMDGIE 360
LG+ + E + SD + + L+ +G AY ++ EQ K + +
Sbjct: 62 WLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYD 121
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD--------PNKSLR-D 405
++ R+ + EE G +R +++ QD L D
Sbjct: 122 NRHRHLTPEEQAAFEAA-------GRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
V R P IG P Y+ D GIT +R
Sbjct: 175 MVIARAAPRG--EIGY-----PLYNLVVVVDDIAMGITDVIR 209
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Length = 298 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 23/223 (10%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
+ RFAP PSG LH G AAL + A+ QG+ +VR +D +P +E + +L+ +
Sbjct: 5 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 64
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--DGIESKCRN 365
E G+ + V + S E L QG +Y R ++Q DG CR
Sbjct: 65 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDG---HCRV 121
Query: 366 NSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKV 425
+ + LRG + D + D + +R R G
Sbjct: 122 LHHGPDNAAVRIRQQHPVTQFTDQLRGIIH-ADEKLAREDFIIHR-------RDG----- 168
Query: 426 YPTYDFACPFV--DAKEGITHALRSSEYHDRNAQYYRIQEDLG 466
Y+ A V D +G+T +R ++ + + + + G
Sbjct: 169 LFAYNLAV--VVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG 209
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Length = 481 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 47/229 (20%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ +G+ I+R +DT+ + E+ + L++ +
Sbjct: 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY--------VDDTPREQM 351
LG+ + E D+ P ++ E AE L+++GKAY +++ + +
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD-------- 398
+ + + + E+GL + + D
Sbjct: 133 SEGKAPHYSQEMFEKFDTP-----ERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVF 187
Query: 399 PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
++ D V R N G PTY+FAC D ITH +R
Sbjct: 188 KTGAIGDFVIMRSN-------G-----LPTYNFACVVDDMLMEITHVIR 224
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 2e-19
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ G+ I+R +DT+ + S E+ +L+ +
Sbjct: 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 188
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPREQMQKERMDG 358
G+ + E D+ P ++ E AE L+ +AY V +
Sbjct: 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS------- 241
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------PNKSLRD 405
K + E + E+G ++ GK +D N +L D
Sbjct: 242 ---KELFTTYEYPHEY-------KEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 291
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
+ + N G +PTY+FA D I+H R ++
Sbjct: 292 FIIMKSN-------G-----FPTYNFAVVVDDHLMRISHVFRGEDH 325
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Length = 488 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ G+ I+R +DT+ + S E+ +L+ +
Sbjct: 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 84
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPREQMQKERMDG 358
G+ + E D+ P ++ E AE L+ +AY V +
Sbjct: 85 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS------- 137
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------PNKSLRD 405
K + E + E+G ++ GK +D N +L D
Sbjct: 138 ---KELFTTYEYPHEY-------KEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 187
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
+ + N G +PTY+FA D I+H R ++
Sbjct: 188 FIIMKSN-------G-----FPTYNFAVVVDDHLMRISHVFRGEDH 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 78/571 (13%), Positives = 166/571 (29%), Gaps = 171/571 (29%)
Query: 82 GSKLQGTYVLLRYIGRVGNFYGQNAYEA--GEIDEWLDYTPVFSSGSEFENACTYVDKYL 139
+ GT L + + + E+ ++Y + S +
Sbjct: 58 KDAVSGTLRLFWTLLS----KQEEMVQKFVEEVLR-INYKFLMSPIKT-----EQRQPSM 107
Query: 140 ERRTFVVGHSLSIVDIAIWSALAGTGQRWD--SLRKSKKYQNLVRWFNSLSAEYSDSLDE 197
R ++ L Q + ++ + + Y L + L
Sbjct: 108 MTRMYIEQRD----------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA------- 150
Query: 198 VTATYVSNRGL---GKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEV--------DLPDAE 246
V G+ GK A DV K + F++ + P+
Sbjct: 151 ---KNVLIDGVLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 247 IGKV-RLRFAPEPSG----------YLHIGHSKAALLNQYFAQRYQGQLIV--------- 286
+ + +L + +P+ L I +A L ++ Y+ L+V
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 287 --------------R----FDDTNPAKESNEFVDNL---LKDIETLGI--KYETVTYTS- 322
R D + A ++ +D+ L E + KY
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 323 -----DYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNN----------- 366
P + + IR G A D+ + + +++ I N
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 367 --SI-EENMK--------LWKEMIAGSERGL--ECCLRGKLDMQDPNKSLRDPVYYR--C 411
S+ + +W ++I + + ++ Q ++ P Y
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 412 NPIP-----HHRIGSKY---KVYPTYDFACPFVDAKEG-----ITHALRSSEYHDRNAQY 458
+ H I Y K + + D P++D I H L++ E+ +R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLF 493
Query: 459 YRIQEDLG-----VRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGI 513
+ D +R + +++ TL + ++ + +DP++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYE----- 542
Query: 514 VRRGLLVEALIQFILEQGA----SKNLNLME 540
LV A++ F+ + SK +L+
Sbjct: 543 ----RLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 90/553 (16%), Positives = 156/553 (28%), Gaps = 181/553 (32%)
Query: 307 DIETLGIKYETVTYTSDYFPDLME-MAENLIRQGKAYVDDTPREQMQKERMDGI-ESKCR 364
D ET +Y Y D + +N + V D P+ + KE +D I SK
Sbjct: 8 DFETGEHQY---QY-KDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIMSK-- 58
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKS-LRDPVYYRCN-PIP------- 415
+++ ++L+ +++ E ++ + L N L P+ P
Sbjct: 59 -DAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 416 -HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK----- 469
R+ + +V+ Y V + LR + R A+ I LG K
Sbjct: 115 QRDRLYNDNQVFAKY-----NVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 470 -------------VHIY--EFSRLNMVYTLLSKRKLLW--FVQNG--KVDGWDDPRFPTV 510
I+ N T+L + L N + D + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 511 QGIVR-RGLLVE-----ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPV---CPRHTA 561
R LL L+ +L + N K + C
Sbjct: 229 SIQAELRRLLKSKPYENCLL--VL-------------LNVQ--NAKAWNAFNLSC----- 266
Query: 562 VIEDRRVLLT-----LTDGPDKPFVRIIPRHKKYEGAGEKATTYTKR-------IWIDHA 609
++LLT +TD + + + T T ++D
Sbjct: 267 -----KILLTTRFKQVTD-------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 610 DAQL--------------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSV- 654
L I+ + L W N K ++ D+ + + S LE +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESS-LNVLEPAEY 371
Query: 655 -----------KNTK-----LKLTWL------PE--TNELVNLTLVGFD----------- 679
+ L L W N+L +LV
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 680 YLITKKKLEEGED----FLDVLNPCTRFETAAIGDSN------------MRNLKRGEILQ 723
YL K KLE +D N F++ + ++N++ E +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 724 LERKGYFRCDVPF 736
L R + D F
Sbjct: 492 LFRMVFL--DFRF 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 45/282 (15%), Positives = 75/282 (26%), Gaps = 76/282 (26%)
Query: 112 IDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI----VDI------AIWSAL 161
D W + E++ ++ R+ F LS+ I IW +
Sbjct: 344 WDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDV 399
Query: 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQG 221
+ + K KY + + + E+ + L + +
Sbjct: 400 IKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 222 VKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYL--HIG-HSKAALLNQYFAQ 278
D DL P Y HIG H K +
Sbjct: 459 FDSD---------------DLIP-----------PYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 279 --------RYQGQLIVRFDDTN---PAKESNEFVD----------------NLLKDIETL 311
R+ Q I R D T N L+ I
Sbjct: 493 FRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 312 GIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQK 353
K E S Y DL+ +A L+ + +A ++ + Q+Q+
Sbjct: 552 LPKIEENLICSKY-TDLLRIA--LMAEDEAIFEEAHK-QVQR 589
|
| >1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 Length = 219 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 33/151 (21%)
Query: 72 GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF---------YGQNAYEAGEIDEWLDYT--- 119
P F G KL + Y+ ++ + +I W
Sbjct: 47 KKVPAFVGPKGYKLTEAMAINYYLVKLSQDDKMKTQLLGADDDLNAQAQIIRWQSLANSD 106
Query: 120 ---------------------PVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIW 158
V S+ + + L+ T++ ++S+ D+
Sbjct: 107 LCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLADLVAA 166
Query: 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
S + ++ +VRWFN++ A
Sbjct: 167 SIFTRYFESLFGTEWRAQHPAIVRWFNTVRA 197
|
| >3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A* Length = 209 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS--------EFENACTY 134
G+ + Y + + I++ L Y P + + + E A +
Sbjct: 78 GKTDSLYPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEF 137
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLR-KSKKYQNLVRWFNSLSAE 190
++ +LE + + G SL++ DIA+ + ++ ++ + + KY N+ RW+ +
Sbjct: 138 LNTFLEGQDYAAGDSLTVADIALVATVS----TFEVAKFEISKYANVNRWYENAKKV 190
|
| >4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239} Length = 238 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 69 ETSGSAPTFSFSNGSKLQGTYVLLRYI----GRVGNFYGQNA---YEAGEIDEWLD-YTP 120
+T F +S + + + + + A Y+ G IDE + Y
Sbjct: 77 DTYDKEHKFFYSLKQDPKLYWEQNELLFYQATQFQSQTLTIANANYQNGHIDENIAQYV- 135
Query: 121 VFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIW----SALAGTGQRWDSLRKSKK 176
S FE +++ L R + VG +IVDIA + +
Sbjct: 136 ----LSSFEKVFAFMETKLSGRDWFVGDKFTIVDIAFLVGEHRRRERLHNSPIWIDLKEN 191
Query: 177 YQNLVRWFNSLSA 189
+ N+ +WF A
Sbjct: 192 FPNVEKWFQRAIA 204
|
| >2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1* Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+G L + + RY+ + + G E +D +D + E
Sbjct: 56 DGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMF 115
Query: 133 ------------TYVDKYLERRTFVVGHSLSIVDIAIWSAL 161
+D YL R +++G S++ D
Sbjct: 116 NELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICS 156
|
| >4g9h_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 2.10A {Yersinia pestis} Length = 211 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 14/124 (11%), Positives = 39/124 (31%), Gaps = 32/124 (25%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ EWL++ +P+F+ +
Sbjct: 73 VQYLADKVPDRHLIAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTIVRERL 132
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFN 185
+ +YVD L +++G S+ D +++ + + +L ++
Sbjct: 133 DKQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSRWANALNLQIK------ERSHLDQYMA 186
Query: 186 SLSA 189
++
Sbjct: 187 RVAE 190
|
| >1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5 Length = 209 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 26/117 (22%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS--------EFENACTY 134
G+ Y ++ + +++ L + P + + ++A +
Sbjct: 77 GKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGF 136
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGT-GQRWDSLRKSKKYQNLVRWFNSLSAE 190
++ +LE + + G+ L+I D+++ + +A +D Y N+ WF A
Sbjct: 137 LNTFLEGQEYAAGNDLTIADLSLAATIATYEVAGFD----FAPYPNVAAWFARCKAN 189
|
| >1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans} Length = 207 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G KL ++ + R++ R G+ A+E +++ D Y + +
Sbjct: 59 DGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGD 118
Query: 128 FENAC------------TYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
E ++ +L+ F+VG SL+ +D+AI A +
Sbjct: 119 VETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDF-- 176
Query: 174 SKKYQNLVRWFNSLSA 189
K+ L + A
Sbjct: 177 -SKFPELKAHAEKIQA 191
|
| >1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5 Length = 210 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 12/116 (10%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLDYT-------------PVFSSGS-------EFENACTYV 135
+ Y ++ +++ L + V + + A +
Sbjct: 76 AKDDTLYPKDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLL 135
Query: 136 DKYLERRTFVVGHSLSIVDIAIWSALAGT-GQRWDSLRKSKKYQNLVRWFNSLSAE 190
++++ R + L++ DI + + + D + + ++ W + AE
Sbjct: 136 EQFVTERAYAAADHLTVADICLLGTVTALNWLKHD----LEPFPHIRAWLERVRAE 187
|
| >2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} Length = 204 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 27/108 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G +L + ++RY+ R + G++A+E +D D P F
Sbjct: 57 DGKQLPQSVAIVRYLARKFGYAGKSAWEEAVVDSIADQFKDFLNEVRPYFKVLLGMDQGD 116
Query: 128 --------FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSAL 161
FE A + + ++VG SL+ D+ +
Sbjct: 117 LKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFADLYVAEMG 164
|
| >3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli} Length = 215 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIW---SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+K LE ++ G + SI DIA W +A Y + W + +
Sbjct: 145 NKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDLAM------YPAVKNWHERIRS 195
|
| >1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 Length = 218 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 30/125 (24%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSEF------ 128
L Y+ G+ N Y ++ +D+ L Y P G+
Sbjct: 71 LSYLVSAYGKDENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKA 130
Query: 129 --ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRWDSLRKSKKYQNLVRWFN 185
A + + L++ + + +I DIA+ ++ ++D Y + W
Sbjct: 131 KLAEALGWFEAMLKQYQWSAANHFTIADIALCVTVSQIEAFQFD----LHPYPRVRAWLL 186
Query: 186 SLSAE 190
E
Sbjct: 187 KCKDE 191
|
| >3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A* Length = 233 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 32/218 (14%), Positives = 55/218 (25%), Gaps = 61/218 (27%)
Query: 28 PALVLLALVMTMEIKVLSFPADSPPLLVIAAAKLAGITIPTET----------------- 70
+ M ++ + PA P V A + +
Sbjct: 6 FLIYNGGEKMKQKMIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLA 65
Query: 71 ---SGSAPTFSFSNGSKLQGTYVLLRYIGRV---GNFYGQNAYEAGEIDEWLDY------ 118
SG+ P +G+ + + YI + G+ E G I
Sbjct: 66 KNYSGTVPVLELDDGTLIAECTAITEYIDALDGTPTLTGKTPLEKGVIHMMNKRAELELL 125
Query: 119 ----------TPVFSSGSEF--------------ENACTYVDKYLERRTFVVGHSLSIVD 154
TP E + Y D L R +V G S S+ D
Sbjct: 126 DPVSVYFHHATPGLGPEVELYQNKEWGLRQRDKALHGMHYFDTVLRERPYVAGDSFSMAD 185
Query: 155 IAIWSALA---GTGQRWDSLRKSKKYQNLVRWFNSLSA 189
I + + L + + + L W+ +
Sbjct: 186 ITVIAGLIFAAIVKLQVPE-----ECEALRAWYKRMQQ 218
|
| >2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus} Length = 206 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + + RY+ R F G++ ++ +D D YT + +
Sbjct: 57 DGKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLADQYSDYRVEIKSFFYTVIGMREGD 116
Query: 128 FENAC------------TYVDKYLERRT--FVVGHSLSIVDIAIWSAL 161
E ++ K+L++ F+VG SL+ VD+ +
Sbjct: 117 VEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVSEHN 164
|
| >3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* Length = 222 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD----------YTPVFSSGSEFEN 130
+G KL T +L YI N +G+N E ID +++ P + +
Sbjct: 61 DGMKLVQTRSILHYIADKHNLFGKNLKERTLIDMYVEGTLDLLELLIMHPFLKPDDQQKE 120
Query: 131 ACTYVDKYLER-------------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
K + R ++F+VG+ LS+ D+ + + ++ ++ +
Sbjct: 121 VVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVILLQTILALEEKIPNI--LSAF 178
Query: 178 QNLVRWFNSLSA 189
L + LS
Sbjct: 179 PFLQEYTVKLSN 190
|
| >1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A* Length = 201 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 32/124 (25%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ N+ + EWL+Y TP+F + +
Sbjct: 70 MQYLADSVPDRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQL 129
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFN 185
E YV++ L+ ++ G +I D +++ L + +++ +
Sbjct: 130 EKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLE------GLEHIAAFMQ 183
Query: 186 SLSA 189
++
Sbjct: 184 RMAE 187
|
| >3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori} Length = 216 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 17/125 (13%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDYT-------------PVFSSGS-------- 126
Y+ G+ +Y ++ + +++ L + P+ G
Sbjct: 72 ACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLK 131
Query: 127 -EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRWDSLRKSKKYQNLVRWF 184
+ + ++++++LE+ +V +I D +I+++++ WD + N+ RW
Sbjct: 132 DDLNSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAVGWD----ISSFPNIQRWI 187
Query: 185 NSLSA 189
Sbjct: 188 KDCLL 192
|
| >1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A* Length = 203 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ A E EWL++ +P+FSS + +
Sbjct: 70 VQYLADLKPDRNLIAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKL 129
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLS 188
++ Y++ L ++ V G ++ D +++ L +L + ++
Sbjct: 130 KSKFVYINDVLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDL---TDLSHLQDYLARIA 186
Query: 189 A 189
Sbjct: 187 Q 187
|
| >2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus} Length = 206 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 29/136 (21%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD------------YTPVFSSGSE- 127
+G +L ++ + RY+ R F G+ +E +D D V
Sbjct: 57 DGKQLAQSFAIARYLSRKFGFAGKTPFEEALVDSVADQYKDYINEIRPYLRVVAGVDQGD 116
Query: 128 --------FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
A ++++ ++VG S++ D+ + +G ++ S+
Sbjct: 117 PEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLAEHTSGIAAKFPSI-- 174
Query: 174 SKKYQNLVRWFNSLSA 189
+ + + +
Sbjct: 175 YDGFPEIKAHAEKVRS 190
|
| >1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A* Length = 209 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 38/132 (28%)
Query: 92 LRYIGRV---GNFYGQNAYEAGEIDEWLDY------------------TPVFS------- 123
+Y R N EA +D W++ +P+
Sbjct: 71 CKYAARKNKPELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKV 130
Query: 124 ---SGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSK---KY 177
+ + + + L + ++ G LS+ D+ S + + Y
Sbjct: 131 VDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTL----CLFATPYASVLDAY 186
Query: 178 QNLVRWFNSLSA 189
++ W++ L
Sbjct: 187 PHVKAWWSGLME 198
|
| >1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A* Length = 211 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 134 YVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ L+ ++ G + ++ D+ A+ + + + + W ++
Sbjct: 149 VYEARLKEFKYLAGETFTLTDLHHIPAIQ-YLLGTPTKKLFTERPRVNEWVAEITK 203
|
| >1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* Length = 234 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-S 126
KL + ++RYI N G E EI Y+ F +
Sbjct: 60 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 119
Query: 127 EFENAC----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+F + + L +T++ G ++ D ++ AL + LV
Sbjct: 120 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMC--LDAFPKLVC 177
Query: 183 WFNSLSA 189
+ + A
Sbjct: 178 FKKRIEA 184
|
| >2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* Length = 216 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+ KL + +LRYI G + E + + + +
Sbjct: 60 DKCKLTQSLAILRYIADKHGMIGTTSEERARVSMIEGAAVDLRQGISRISYQPKFEQLKE 119
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ +L + ++ G S+S VD ++ AL + NL +
Sbjct: 120 GYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRYLEPHC--LDHFPNLQQ 177
Query: 183 WFNSLSA 189
+ + + A
Sbjct: 178 FMSRIEA 184
|
| >2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A* Length = 202 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------YTPVFSSGSEFENA 131
+G+K+ + + R++ R G+ + E +DE + F+ + E
Sbjct: 56 DGTKMSQSMCIARHLAREFGLDGKTSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAV 115
Query: 132 CTYVDK-------YLER--------RTFVVGHSLSIVDIAIWSAL 161
+K +LE F VG+S+++ D+ + AL
Sbjct: 116 QQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVAL 160
|
| >1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A* Length = 211 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWL----DYTPVFSSGSEFENA----- 131
L + ++RY+ + N G++ D D F++ + F+
Sbjct: 65 GDLILAQSQAIVRYLSKKYNICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFL 124
Query: 132 -------CTYVDKYLER--------RTFVVGHSLSIVDIAIWSAL 161
Y +K L++ + + VG++L+ D+A+++
Sbjct: 125 NEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNLY 169
|
| >1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 Length = 254 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-- 125
KL + ++RYI N G E EI Y+ F +
Sbjct: 61 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 120
Query: 126 ---SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
S+ + L +T++ G ++ D ++ AL + LV
Sbjct: 121 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMC--LDAFPKLVC 178
Query: 183 WFNSLSA 189
+ + A
Sbjct: 179 FKKRIEA 185
|
| >3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 Length = 224 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+K+ + +LRYI R N G+ E +D + + S +
Sbjct: 69 GKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKP 128
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ +L + ++ G L+ VD + L ++ NL
Sbjct: 129 QYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIFDPKC--LDEFPNLKA 186
Query: 183 WFNSLSA 189
+ A
Sbjct: 187 FMCRFEA 193
|
| >2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... Length = 218 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGS------ 126
K+ + +LRYI R N G++ E D + +
Sbjct: 66 GTHKITQSNAILRYIARKHNLCGESEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKP 125
Query: 127 EFENACT----YVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
E+ A ++L ++ + +G ++ VD + L S + NL
Sbjct: 126 EYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVFEPSC--LDAFPNLKD 183
Query: 183 WFNSLSA 189
+ +
Sbjct: 184 FISRFEG 190
|
| >1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 Length = 280 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-S 126
KL + ++RYI N G E EI Y+ F +
Sbjct: 60 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 119
Query: 127 EFENAC----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+F + + L +T++ G ++ D ++ AL + LV
Sbjct: 120 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCL--DAFPKLVC 177
Query: 183 WFNSLSA 189
+ + A
Sbjct: 178 FKKRIEA 184
|
| >1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5 Length = 206 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 29/136 (21%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + + RY+ + F G +E+ ID D YT + +
Sbjct: 57 DGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYYYTALGFMTGD 116
Query: 128 FENACT-----YVDKYLER---------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
+ T K+L F+VG +S VD+ + +A R
Sbjct: 117 VDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEY-- 174
Query: 174 SKKYQNLVRWFNSLSA 189
+ + + +
Sbjct: 175 IEGFPEVKAHMERIQQ 190
|
| >2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus} Length = 225 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G+ L ++ + +G G N +E +I + P +
Sbjct: 81 SGNVLGESHAIELLLGGRFGLLGTNDWEEAKIMAVVLNIDELFQKLIPWTHEKNTTKKAE 140
Query: 128 -----FENAC----TYVDKYLERRT--FVVGHSLSIVDIAIWSAL 161
E+ +K+L+ T +VG+ +S+ D+ +++ L
Sbjct: 141 LFRNLSESDVMPFLGRYEKFLKESTTGHIVGNKVSVADLTVFNML 185
|
| >1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A Length = 229 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD----------YTPVFSSGSEFEN 130
+G KL T +L YI N YG++ E ID ++ P S+ + +
Sbjct: 61 DGMKLVQTRAILNYIAGKYNLYGKDLKERALIDMYVGGTDDLMGFLLSFPFLSAEDKVKQ 120
Query: 131 ACTYVDKYLER-------------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
V+K R + F+VG+ LS DI + A+ ++ +
Sbjct: 121 CAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLLEAILMVEEKKSDA--LSGF 178
Query: 178 QNLVRWFNSLSA 189
L + +S+
Sbjct: 179 PLLQAFKKRISS 190
|
| >3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 34/127 (26%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWL------------------DYTPVFSSGSEF----- 128
L Y+ + + E +W+
Sbjct: 73 LWYLAVGTSLAPDTRMDRAEALQWMFFEQHALEPNIGSAYFWLCLVKGGRDLQTHALEDW 132
Query: 129 ----ENACTYVDKYLERRTFVVGHSLSIVDIAIWS--ALAGTGQRWDSLRKSKKYQNLVR 182
A ++ +L+ + L+I DIA++ +A L + +
Sbjct: 133 LERGYAALQVMENHLKTNDYFAAGQLTIADIALYGYTHVADQCD--FDL---STFPAVNA 187
Query: 183 WFNSLSA 189
W +
Sbjct: 188 WLRRVEQ 194
|
| >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} Length = 288 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIWS-----ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
DK L + FV G +I D+AIW L G + L + Y+++ RW +
Sbjct: 191 DKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFL-DAGSYKHVQRWAKEVGE 248
|
| >1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5 Length = 249 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 23/104 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G ++ + + R++ + G +E +ID +D V +
Sbjct: 103 DGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEK 162
Query: 128 -----FENACTYVDKYLERR-----TFVVGHSLSIVDIAIWSAL 161
+ + LE+ + L+ D+
Sbjct: 163 KLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGIT 206
|
| >2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ... Length = 210 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
L + +LR++GR YG++ EA +D D Y + + E
Sbjct: 59 GDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDD 118
Query: 128 FENACTYVDKYLER--------RTFVVGHSLSIVDIAIWSAL 161
+ A K E +TF+VG +S D + L
Sbjct: 119 YVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLL 160
|
| >3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens} Length = 210 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIWS--ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+K L R ++VG SI DIA+++ +A G L +Y + W + +
Sbjct: 143 EKQLSRTPYLVGEHYSIADIALYAYTHVADEGG--FDL---SRYPGIQAWMQRVQS 193
|
| >1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A* Length = 211 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 9/105 (8%), Positives = 29/105 (27%), Gaps = 23/105 (21%)
Query: 80 SNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE---- 127
+ + + + RY+ + + G E +++ + Y E
Sbjct: 63 GHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQK 122
Query: 128 -----FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSAL 161
+ + VG +++ D+ + + +
Sbjct: 123 IIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVI 167
|
| >3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} Length = 218 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
L + +LRYI N G E +I Y F
Sbjct: 61 GNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKV 120
Query: 128 FENAC-----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
++L +++ G + + +D + AL + + + NL++
Sbjct: 121 PYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTS--VEAFPNLMQ 178
Query: 183 WFNSLSA 189
+ + + A
Sbjct: 179 FIHRIEA 185
|
| >1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans} Length = 208 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + +LRY+ R F G+ E +D D +E
Sbjct: 58 DGFELPQSGAILRYLARKFGFAGKTPEEEAWVDAVHDLFKDFLAEFKKFAAERRSGKSAE 117
Query: 128 F------ENACTYVDKYLER---------RTFVVGHSLSIVDIAIWSAL 161
E + Y F++G ++ D+ + L
Sbjct: 118 EVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNL 166
|
| >1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* Length = 219 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
KL + +LRYI R N G+ E +D + + + S +
Sbjct: 65 GDVKLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKP 124
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ ++L R++ VG L+ VD + L + NL +
Sbjct: 125 AYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLDQQRMFVPDC--PELQGNLSQ 182
Query: 183 WFNSLSA 189
+ A
Sbjct: 183 FLQRFEA 189
|
| >1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* Length = 244 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 43/135 (31%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYV------------ 135
L Y+ ++Y + + E+L + + +
Sbjct: 71 LIYLSCKYQTPDHWYPSDLQARARVHEYLG----WHADCIRGTFGIPLWVQVLGPLIGVQ 126
Query: 136 ---------------------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS 174
DK+L R F+ G +++ D+ L L
Sbjct: 127 VPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELF-- 184
Query: 175 KKYQNLVRWFNSLSA 189
+ L W + A
Sbjct: 185 EGRPRLAAWRGRVEA 199
|
| >2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A Length = 247 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 36/132 (27%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLD------------------YTPVFSSGSEFE 129
L Y+ +Y Q+ +DE+L PVF
Sbjct: 78 LLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSP 137
Query: 130 NAC------------TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
DK+L+ + F+ G +S+ D+ + L + +
Sbjct: 138 QTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVF--EGR 195
Query: 178 QNLVRWFNSLSA 189
L W + A
Sbjct: 196 PKLATWRQRVEA 207
|
| >3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A* Length = 219 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 29/117 (24%)
Query: 99 GNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS----------EFENACTYV 135
Y + + + L Y P + E A ++
Sbjct: 86 ERLYPSDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFL 145
Query: 136 DKYLERRTFVV-GHSLSIVDIAIWSALAGTG-QRWDSLRKSKKYQNLVRWFNSLSAE 190
+ +LE +V G +I D++I + +A +D ++Y+N+ RW+ SA
Sbjct: 146 NTFLEGEQYVAGGDDPTIADLSILATIATYEVAGYD----LRRYENVQRWYERTSAI 198
|
| >1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A* Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 24/131 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
++ + +LR++ R N G+N E ID + + YT + E
Sbjct: 56 GDQQIVQSGAILRHLARKYNLNGENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDP 115
Query: 128 -----FENACTYVDKYLER----RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQ 178
+K L R ++G +S D A++ L K+
Sbjct: 116 YIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDPHC--LDKFP 173
Query: 179 NLVRWFNSLSA 189
L + +
Sbjct: 174 LLKVFHQRMKD 184
|
| >2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A Length = 230 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 32/125 (25%)
Query: 92 LRYIG-RVGNFYGQNAYEAGEIDEWLDY--------------------------TPVFSS 124
+ +I ++ W+ + +
Sbjct: 90 VMHIAQHHSGLLPEDQLRRARTVAWMFAALNTIEPSILNFTTVWLFERNEPWHEARLART 149
Query: 125 GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWF 184
+ + +L R ++ G S S DI + L R +S K Y NL+ +
Sbjct: 150 KEQLLKRLDELSAWLGDREWLEG-SFSAADILMICVLR----RLESSGILKDYGNLLAYV 204
Query: 185 NSLSA 189
A
Sbjct: 205 ERGKA 209
|
| >1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5 Length = 201 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 101 FYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EFENACTYVDKYLER 141
+ + + + L + P+F+ + +N +DK L
Sbjct: 83 APAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAG 142
Query: 142 RTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
R G++ S+ DI ++ L A G Y L + ++
Sbjct: 143 RDHYAGNAFSVADIYLYVMLGWPAYVGIDMA------AYPALGAYAGKIAQ 187
|
| >2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A* Length = 211 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 23/101 (22%)
Query: 84 KLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC--- 132
+ Q + + R + R G+ E I+ + +F + + A
Sbjct: 67 RYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKE 126
Query: 133 ----------TYVDKYLERR--TFVVGHSLSIVDIAIWSAL 161
V + LE V G+ +++ D+ +++ L
Sbjct: 127 FKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTL 167
|
| >3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides} Length = 225 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 32/127 (25%)
Query: 92 LRYIGRV--GNFYGQNAYEAGEIDEWLDY---------------------------TPVF 122
+I R G ++ E + W + +
Sbjct: 81 TLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIA 140
Query: 123 SSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+ ++++ ++VG ++ D+ + L L + + +
Sbjct: 141 IAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALL---EPFPAVAA 197
Query: 183 WFNSLSA 189
W + +
Sbjct: 198 WLDRCQS 204
|
| >1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5 Length = 216 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 11/61 (18%)
Query: 134 YVDKYLERRTFVVGHSLSIVDIAIWSAL-----AGTGQRWDSLRKSKKYQNLVRWFNSLS 188
+ +L R ++ G ++ D S L + ++ W+ ++
Sbjct: 145 VYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAA------RPHVKAWWEAIV 198
Query: 189 A 189
A
Sbjct: 199 A 199
|
| >1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G KL T +L YI N YG++ E ID +++ + E
Sbjct: 60 DGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAK 119
Query: 128 ----FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
E E+ + ++VG+ LS DI + L + SL +
Sbjct: 120 LALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLI--SSF 177
Query: 178 QNLVRWFNSLSA 189
L +S
Sbjct: 178 PLLKALKTRISN 189
|
| >1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A Length = 221 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------YTPVFSSGSEFENA 131
+G L T +L Y+ N YG++ E ID + D F + E E +
Sbjct: 60 DGMMLTQTRAILSYLAAKYNLYGKDLKERVRIDMYADGTQDLMMMIAVAPFKTPKEKEES 119
Query: 132 -----CTYVDKYLER---------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
+Y F+VG+ LS DI + A+ + + +
Sbjct: 120 YDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLLEAILMVEELSAPVL--SDF 177
Query: 178 QNLVRWFNSLSA 189
L + +S
Sbjct: 178 PLLQAFKTRISN 189
|
| >3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* Length = 229 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA---GTGQRWDSLRKSKKYQNLVRW 183
+ + + +V G L++ D+ ++ G++ ++ +
Sbjct: 129 DLLAGFATLKRNGRFAPYVAGEQLTLADLMFCFSVDLANAVGKKVLNIDFLADFPQAKAL 188
Query: 184 FNSLSA 189
+
Sbjct: 189 LQLMGE 194
|
| >2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa} Length = 207 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
+ D +L+ ++ S D ++ L + L L +F
Sbjct: 134 KLRVLYQRADAHLKHHNWLANGQRSGADAYLYVTLRWAKKVGVDL---SSLDALSAFFER 190
Query: 187 LSA 189
+ A
Sbjct: 191 MEA 193
|
| >3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A* Length = 213 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 20/197 (10%), Positives = 49/197 (24%), Gaps = 46/197 (23%)
Query: 37 MTMEIKVLSFPADSPPLLVIAAAKLAGI------TIPTETS---------GSAPTFSFSN 81
M++ K++ V + K G+ T APT
Sbjct: 1 MSL--KLIGMLDSPYVRRVAISLKSLGLPFEHHSLSVFSTFEQFKAINPVVKAPTLVCEG 58
Query: 82 GSKLQGTYVLLRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGSEF 128
G L + +++ Y+ G + + + V+
Sbjct: 59 GEVLMDSSLIIDYLETLAGPQRSLMPTALPQRLRELRLVGLALAACEKSVQIVYERNLRP 118
Query: 129 EN----------------ACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLR 172
A +++ L+++ SL I++ A + +
Sbjct: 119 AEKQHGPWLERVGGQLQAAYGELEQELQKQPLPRDGSLGQAGISLAVAWSFSQMMVADQF 178
Query: 173 KSKKYQNLVRWFNSLSA 189
++ + +
Sbjct: 179 NPGQFPAVRGFAEYAEQ 195
|
| >3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A* Length = 243 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYL-ERRTFVVGHSL 150
+ + + + + +D + + + + YL + FV
Sbjct: 122 MFETSNISTNVMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYLKQTGGFVATKEF 181
Query: 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++ D+ + +A ++ +L Y N+ +++N +
Sbjct: 182 TMADVFFFPMVALIVRQGANL--KDSYPNIFKYYNMMMD 218
|
| >3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} Length = 252 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 12/143 (8%), Positives = 36/143 (25%), Gaps = 34/143 (23%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------------YTPVFSSG 125
+G + T +L ++G + +++
Sbjct: 80 DGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYE 139
Query: 126 SEFENACTYVDKYLERRT-----------------FVVGHSLSIVDIAIWSALAGTGQRW 168
+ + A + E R S D++++ + G +
Sbjct: 140 DQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAF 199
Query: 169 DSLRKS--KKYQNLVRWFNSLSA 189
++ +Y L+ ++
Sbjct: 200 PRRMRTLVHRYPRLMALHARVAE 222
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 100.0 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 100.0 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 100.0 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 100.0 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 100.0 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 100.0 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 100.0 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 100.0 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 100.0 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 100.0 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 100.0 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 99.96 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.96 | |
| 4glt_A | 225 | Glutathione S-transferase-like protein; structural | 99.94 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 99.93 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 99.93 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.93 | |
| 3vk9_A | 216 | Glutathione S-transferase delta; glutathione bindi | 99.93 | |
| 4gf0_A | 215 | Glutathione S-transferase; GST, enzyme function in | 99.92 | |
| 4gci_A | 211 | Glutathione S-transferase; GST, enzyme function in | 99.92 | |
| 4hoj_A | 210 | REGF protein; GST, glutathione S-transferase, enzy | 99.92 | |
| 4hi7_A | 228 | GI20122; GST, glutathione S-transferase, enzyme fu | 99.91 | |
| 3tou_A | 226 | Glutathione S-transferase protein; GSH binding sit | 99.91 | |
| 4g10_A | 265 | Glutathione S-transferase homolog; thioredoxin fol | 99.91 | |
| 3lxz_A | 229 | Glutathione S-transferase family protein; structur | 99.91 | |
| 3m0f_A | 213 | Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu | 99.9 | |
| 3m8n_A | 225 | Possible glutathione S-transferase; PSI-II, struct | 99.9 | |
| 4iel_A | 229 | Glutathione S-transferase, N-terminal domain PROT; | 99.9 | |
| 3uar_A | 227 | Glutathione S-transferase; GSH binding site; HET: | 99.9 | |
| 3gx0_A | 215 | GST-like protein YFCG; transferase, glutathione, g | 99.9 | |
| 3iso_A | 218 | Putative glutathione transferase; GST; HET: GSH; 1 | 99.9 | |
| 3ibh_A | 233 | GST-II, saccharomyces cerevisiae GTT2; glutathione | 99.9 | |
| 3lyp_A | 215 | Stringent starvation protein A; structural genomic | 99.9 | |
| 3m3m_A | 210 | Glutathione S-transferase; PSI-II, structural geno | 99.89 | |
| 3r2q_A | 202 | Uncharacterized GST-like protein YIBF; transferase | 99.89 | |
| 3ein_A | 209 | GST class-theta, glutathione S-transferase 1-1; de | 99.89 | |
| 3lyk_A | 216 | Stringent starvation protein A homolog; structural | 99.89 | |
| 1tw9_A | 206 | Glutathione S-transferase 2; 1.71A {Heligmosomoide | 99.89 | |
| 3lsz_A | 225 | Glutathione S-transferase; xenobiotic, biodegradat | 99.89 | |
| 3ubk_A | 242 | Glutathione transferase; GSH binding; 1.95A {Lepto | 99.89 | |
| 3niv_A | 222 | Glutathione S-transferase; structural genomics, PS | 99.89 | |
| 2on7_A | 206 | Nagst-1, Na glutathione S-transferase 1; hookworm; | 99.89 | |
| 1nhy_A | 219 | EF-1-gamma 1, elongation factor 1-gamma 1; protein | 99.89 | |
| 2on5_A | 206 | Nagst-2, Na glutathione S-transferase 2; hookworm; | 99.89 | |
| 2a2r_A | 210 | Glutathione S-transferase P; detoxification, nitri | 99.89 | |
| 1yq1_A | 208 | Glutathione S-transferase; nematoda, structural ge | 99.89 | |
| 4ikh_A | 244 | Glutathione S-transferase; enzyme function initiat | 99.89 | |
| 4exj_A | 238 | Uncharacterized protein; transferase-like protein, | 99.89 | |
| 2hnl_A | 225 | Glutathione S-transferase 1; prostaglandin synthas | 99.89 | |
| 3n5o_A | 235 | Glutathione transferase; seattle structural genomi | 99.89 | |
| 1tu7_A | 208 | Glutathione S-transferase 2; HET: GSH; 1.50A {Onch | 99.89 | |
| 1m0u_A | 249 | GST2 gene product; flight muscle protein, sigma, t | 99.89 | |
| 2cvd_A | 198 | Glutathione-requiring prostaglandin D synthase; gl | 99.89 | |
| 2gsq_A | 202 | Squid GST, glutathione S-transferase; squid digest | 99.89 | |
| 3ik7_A | 222 | Glutathione S-transferase A4; human GST A4-4, enzy | 99.89 | |
| 1n2a_A | 201 | Glutathione S-transferase; HET: GTS; 1.90A {Escher | 99.89 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 99.89 | |
| 1axd_A | 209 | Glutathione S-transferase I; transferase, herbicid | 99.88 | |
| 1yy7_A | 213 | SSPA, stringent starvation protein A; GST fold, tr | 99.88 | |
| 3q18_A | 239 | GSTO-2, glutathione S-transferase omega-2; glutath | 99.88 | |
| 2dsa_A | 203 | Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu | 99.88 | |
| 1zl9_A | 207 | GST class-sigma, glutathione S-transferase 5; glut | 99.88 | |
| 1pmt_A | 203 | PMGST, GST B1-1, glutathione transferase; glutathi | 99.88 | |
| 4hz4_A | 217 | Glutathione-S-transferase; enzyme function initiat | 99.88 | |
| 1f2e_A | 201 | Glutathione S-transferase; GST complexed with glut | 99.88 | |
| 4id0_A | 214 | Glutathione S-transferase-like protein YIBF; GST, | 99.88 | |
| 2imi_A | 221 | Epsilon-class glutathione S-transferase; HET: GSH; | 99.88 | |
| 3gtu_B | 224 | Glutathione S-transferase; conjugation, detoxifica | 99.88 | |
| 2wb9_A | 211 | Glutathione transferase sigma class; thioredoxin f | 99.88 | |
| 4hz2_A | 230 | Glutathione S-transferase domain; glutathione,enzy | 99.88 | |
| 1gnw_A | 211 | Glutathione S-transferase; herbicide detoxificatio | 99.88 | |
| 3ay8_A | 216 | Glutathione S-transferase; GST fold, GST binding, | 99.88 | |
| 2ws2_A | 204 | NU-class GST, glutathione S-transferase; parasite, | 99.88 | |
| 1oe8_A | 211 | Glutathione S-transferase; schistosomiasis, detoxi | 99.88 | |
| 2c4j_A | 218 | Glutathione S-transferase MU 2; glutathione transf | 99.88 | |
| 3cbu_A | 214 | Probable GST-related protein; thioredoxin fold, GS | 99.88 | |
| 2pvq_A | 201 | Glutathione S-transferase; xenobiotics detoxificat | 99.88 | |
| 1k3y_A | 221 | GSTA1-1, glutathione S-transferase A1; S-hexyl glu | 99.88 | |
| 1b48_A | 221 | GST, mgsta4-4, protein (glutathione S-transferase) | 99.88 | |
| 4ecj_A | 244 | Glutathione S-transferase; transferase-like protei | 99.88 | |
| 4dej_A | 231 | Glutathione S-transferase related protein; transfe | 99.88 | |
| 2vo4_A | 219 | 2,4-D inducible glutathione S-transferase; herbici | 99.88 | |
| 1r5a_A | 218 | Glutathione transferase; glutathione S-transferase | 99.88 | |
| 1vf1_A | 229 | Glutathione S-transferase 3; detoxification; HET: | 99.88 | |
| 2ycd_A | 230 | Glutathione S-transferase; SOIL bacteria, herbicid | 99.88 | |
| 3qav_A | 243 | RHO-class glutathione S-transferase; cytosol; 2.10 | 99.88 | |
| 3rbt_A | 246 | Glutathione transferase O1; glutathione S-transfer | 99.88 | |
| 3f6d_A | 219 | Adgstd4-4, glutathione transferase GST1-4; HET: GT | 99.87 | |
| 3vln_A | 241 | GSTO-1, glutathione S-transferase omega-1; GST fol | 99.87 | |
| 1e6b_A | 221 | Glutathione S-transferase; 1.65A {Arabidopsis thal | 99.87 | |
| 1v2a_A | 210 | Glutathione transferase GST1-6; glutathione S-tran | 99.87 | |
| 2x64_A | 207 | Glutathione-S-transferase; detoxification enzyme; | 99.87 | |
| 3h1n_A | 252 | Probable glutathione S-transferase; APC84167, bord | 99.87 | |
| 2v6k_A | 214 | Maleylpyruvate isomerase; glutathione-S-transferas | 99.87 | |
| 1aw9_A | 216 | Glutathione S-transferase III; herbicide detoxific | 99.87 | |
| 2cz2_A | 223 | Maleylacetoacetate isomerase; structural genomics, | 99.87 | |
| 1okt_A | 211 | Glutathione S-transferase; GST; 1.9A {Plasmodium f | 99.87 | |
| 2fhe_A | 216 | GST, glutathione S-transferase; transferase-substr | 99.87 | |
| 1ljr_A | 244 | HGST T2-2, glutathione S-transferase; HET: GSH; 3. | 99.87 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.87 | |
| 3ic8_A | 310 | Uncharacterized GST-like proteinprotein; glutathio | 99.87 | |
| 1dug_A | 234 | Chimera of glutathione S-transferase-synthetic lin | 99.87 | |
| 1gwc_A | 230 | Glutathione S-transferase TSI-1; herbicide detoxif | 99.87 | |
| 3bby_A | 215 | Uncharacterized GST-like protein YFCF; NP_416804.1 | 99.87 | |
| 1gsu_A | 219 | GST, CGSTM1-1, class-MU glutathione S-transferase; | 99.86 | |
| 1pn9_A | 209 | GST class-delta, glutathione S-transferase 1-6; pr | 99.86 | |
| 1k0d_A | 260 | URE2 protein; nitrate assimilation, structural gen | 99.86 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 99.85 | |
| 1oyj_A | 231 | Glutathione S-transferase; herbicide detoxificatio | 99.85 | |
| 3c8e_A | 288 | YGHU, glutathione S-transferase homologue; glutath | 99.85 | |
| 2c3n_A | 247 | Glutathione S-transferase theta 1; glutathione tra | 99.85 | |
| 2hra_A | 209 | Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l | 99.84 | |
| 1b8x_A | 280 | Protein (AML-1B); nuclear matrix targeting signal | 99.84 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.84 | |
| 1bg5_A | 254 | MAB, fusion protein of alpha-Na,K-ATPase with glut | 99.84 | |
| 2fno_A | 248 | AGR_PAT_752P; thioredoxin fold, GST C-terminal dom | 99.83 | |
| 1k0m_A | 241 | CLIC1, NCC27, chloride intracellular channel prote | 99.82 | |
| 4ags_A | 471 | Thiol-dependent reductase 1; transferase, leishman | 99.8 | |
| 4ags_A | 471 | Thiol-dependent reductase 1; transferase, leishman | 99.8 | |
| 2r4v_A | 247 | XAP121, chloride intracellular channel protein 2; | 99.79 | |
| 3ir4_A | 218 | Glutaredoxin 2; glutathione, IDP00895, structural | 99.79 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.79 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 99.78 | |
| 2ahe_A | 267 | Chloride intracellular channel protein 4; glutathi | 99.78 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 99.78 | |
| 2uz8_A | 174 | Eukaryotic translation elongation factor 1 epsilon | 99.76 | |
| 3m1g_A | 362 | Putative glutathione S-transferase; ECM4-like subf | 99.75 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.75 | |
| 2yv7_A | 260 | CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c | 99.74 | |
| 3fy7_A | 250 | Chloride intracellular channel protein 3; GST, glu | 99.74 | |
| 1z9h_A | 290 | Membrane-associated prostaglandin E synthase-2; me | 99.74 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 99.73 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.72 | |
| 2yv9_A | 291 | Chloride intracellular channel EXC-4; chloride ION | 99.72 | |
| 3ppu_A | 352 | Glutathione-S-transferase; GST fold; HET: GSH; 2.3 | 99.69 | |
| 4f03_A | 253 | Glutathione transferase; GST fold; 1.80A {Phaneroc | 99.68 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 99.68 | |
| 4fqu_A | 313 | Putative glutathione transferase; glutathionyl-hyd | 99.67 | |
| 4g0i_A | 328 | Protein YQJG; glutathionyl-hydroquinone reductase, | 99.65 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 99.56 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 99.53 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 99.47 | |
| 2hsn_A | 160 | Methionyl-tRNA synthetase, cytoplasmic; protein co | 99.45 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 99.22 | |
| 2hqt_A | 124 | GU4 nucleic-binding protein 1; GST-fold, biosynthe | 99.18 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 99.09 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 99.03 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 99.02 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 98.92 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 98.38 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 98.32 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 98.28 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 98.28 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 98.22 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 98.2 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 98.1 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 98.07 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 97.99 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 97.97 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 97.81 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 97.28 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 97.22 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 96.83 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 96.76 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 96.56 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 96.44 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 96.44 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 96.4 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 96.38 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.36 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 96.3 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 96.16 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 96.13 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 96.12 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 95.99 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 95.82 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 95.74 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 95.33 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 95.2 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 95.1 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 94.78 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 94.61 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 94.59 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 94.14 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 94.08 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 94.03 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 93.93 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 93.92 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 93.92 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 93.76 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 93.71 | |
| 1t1v_A | 93 | SH3BGRL3, SH3 domain-binding glutamic acid-rich pr | 93.52 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 93.33 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 92.68 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 92.51 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 92.2 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 92.05 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 91.98 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 90.52 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 89.48 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 87.5 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 87.39 | |
| 2ct6_A | 111 | SH3 domain-binding glutamic acid-rich-like protein | 86.96 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 86.84 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 85.32 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 85.29 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 85.16 | |
| 2kok_A | 120 | Arsenate reductase; brucellosis, zoonotic, oxidore | 84.76 | |
| 3zyw_A | 111 | Glutaredoxin-3; metal binding protein; 1.84A {Homo | 84.13 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 83.39 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 83.29 | |
| 3ipz_A | 109 | Monothiol glutaredoxin-S14, chloroplastic; electro | 82.85 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 80.75 |
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-128 Score=1084.03 Aligned_cols=504 Identities=35% Similarity=0.602 Sum_probs=474.5
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
+|+.+..++|||||||||||||||||||+||+||++||+|||+|+|||||||++|+.++|+++|++||+|||+.|| .++
T Consensus 18 dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde~~~ 97 (553)
T 1qtq_A 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVR 97 (553)
T ss_dssp HHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSSCE
T ss_pred HhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCCCCe
Confidence 3555556679999999999999999999999999999999999999999999999999999999999999999997 789
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHh----cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|+++|++||++|+||+|+|+.+++++.+ ..|++|+||++++++++.+|++|.+|...++++++|+|++
T Consensus 98 ~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~lR~kid 177 (553)
T 1qtq_A 98 YSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKID 177 (553)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECSC
T ss_pred ehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceEEEEecc
Confidence 999999999999999999999999999999999887 3588899999999999999999999987778899999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEee
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYE 474 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~ 474 (758)
+.+.+.+++|||+||+...+|++|+|+|+|||||||||+||||+|||||||||.||+.|+++|.|++++|||+ .|++|+
T Consensus 178 ~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~ 257 (553)
T 1qtq_A 178 MASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYE 257 (553)
T ss_dssp TTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEE
T ss_pred cccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred eeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 475 ~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
|+||++.|+|||||+++.+|++|++.||||||++||++||++||+|++|++|+++.|.+++...+++..|+.+|+..|++
T Consensus 258 f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~~~l~~ 337 (553)
T 1qtq_A 258 FSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNE 337 (553)
T ss_dssp ECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHHHHHH
T ss_pred EEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeecc
Q 043341 555 VCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWG 626 (758)
Q Consensus 555 ~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~ 626 (758)
+++|.|||. +|++|.+.|+|...+.+.+|+||+++++|+|.++|++.||||++||+ +|++|++||||+||
T Consensus 338 ~~~r~~av~--d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~~vrL~~~~ 415 (553)
T 1qtq_A 338 NAPRAMAVI--DPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAY 415 (553)
T ss_dssp HSCEECEES--SEEEEEBTTCCSSCEEEEEESCSSCGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTSEEEETTSC
T ss_pred cccccccee--ccceEEEEcCCCceEEEEecCCCCChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCCEEEeccEE
Confidence 999999999 69999999988435788999999999999999999999999999998 69999999999999
Q ss_pred ceEEeeeeeCCCCCeEEEEEEEecCC------CccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCC
Q 043341 627 NAIVKEISRDQDGNVTQLSGFLHLEG------SVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPC 700 (758)
Q Consensus 627 n~~~~~~~~~~~g~i~~~~~~~~~~~------~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~ 700 (758)
||+|+++++|++|+|++|+|+|+++. +.||+|++|||||+. ++++|++|+||+||++++|++++||+++|||+
T Consensus 416 ~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~-~~~~~~~~~yd~L~~~~~p~~~~~~~~~~np~ 494 (553)
T 1qtq_A 416 VIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAA-HALPVEIRLYDRLFSVPNPGAADDFLSVINPE 494 (553)
T ss_dssp EEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEEST-TCEEEEEEEECCSBSSSCGGGSTTGGGGBCTT
T ss_pred EEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecC-CCEeEEEEecccccCCCCCCcCcchhhhcCCc
Confidence 99999999999999999999999862 678999999999974 68999999999999999999888999999999
Q ss_pred CeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 701 TRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 701 s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
|+.+..+++||++.++++|++|||||.|||+||++++++++|| ++.|
T Consensus 495 s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v-fnr~ 541 (553)
T 1qtq_A 495 SLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV-FNRT 541 (553)
T ss_dssp SEEEEEEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCE-EEEE
T ss_pred chhheeeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCee-EEeE
Confidence 9999999999999999999999999999999998788888877 5553
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-124 Score=1088.40 Aligned_cols=505 Identities=32% Similarity=0.501 Sum_probs=473.5
Q ss_pred CCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Cccc
Q 043341 242 LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTY 320 (758)
Q Consensus 242 ~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~ 320 (758)
|+....++|||||||||||||||||||+||+||++||+|||+|+|||||||++|+.++|+++|++||+|||+.|| .+++
T Consensus 59 l~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde~~~~ 138 (851)
T 2hz7_A 59 LEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHFYY 138 (851)
T ss_dssp HHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTTCEEE
T ss_pred hhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCccc
Confidence 455555679999999999999999999999999999999999999999999999999999999999999999997 7899
Q ss_pred ccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc----CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC
Q 043341 321 TSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM----DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396 (758)
Q Consensus 321 ~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~ 396 (758)
||+|++.|++++++||++|+||+|+|+.+++++.+. .|++++||++++++++.+|++|.+|.+.++++++|+|+++
T Consensus 139 qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~vlR~Kid~ 218 (851)
T 2hz7_A 139 ASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDL 218 (851)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECCCT
T ss_pred HhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCeeEEEeccc
Confidence 999999999999999999999999999999998764 4788999999999999999999999888889999999999
Q ss_pred CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCc-ceEeee
Q 043341 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK-VHIYEF 475 (758)
Q Consensus 397 ~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~-p~~~~~ 475 (758)
.+.+.+++|||+||++..+||+||++|+|||||||||+||||+|||||||||.||+.|+++|.|++++|||+. |.+|+|
T Consensus 219 ~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~f 298 (851)
T 2hz7_A 219 TAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEF 298 (851)
T ss_dssp TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEE
T ss_pred cccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCCCCCceEE
Confidence 9899999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcccc
Q 043341 476 SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPV 555 (758)
Q Consensus 476 ~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~ 555 (758)
+||++.|+|||||+++.+|++|++.||||||++||++||++||+|++|++||.+.|.+++...+++..|+.+|+..|+++
T Consensus 299 ahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r~~l~~~ 378 (851)
T 2hz7_A 299 GRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNHR 378 (851)
T ss_dssp CCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHHHHHHTT
T ss_pred EEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhccCceEEEecCCCCCceeEeecCCCCC-------------------ccccceEEeeeeeeeecccccc----
Q 043341 556 CPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKY-------------------EGAGEKATTYTKRIWIDHADAQ---- 612 (758)
Q Consensus 556 ~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~~-------------------~~~g~r~~~~~~~i~Ie~~D~~---- 612 (758)
++|.|||. +|++|.+.|+|+.. .+.+|+||++ +++|+|.++|+++||||++||+
T Consensus 379 ~~r~~av~--d~~Kl~~~N~~~~~-~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie~~Df~e~~~ 455 (851)
T 2hz7_A 379 APRVMAVL--DPVKVTLTNLDGEK-TLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPP 455 (851)
T ss_dssp CCEECEES--SEEEEEETTCCSCE-EEEEESSCHHHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEEGGGBCSSCC
T ss_pred ccccceEe--cceeEEEecCCCCe-EEEecCCcccccccccccccccccccccCccCceEEEEEcCeEEEEHHHhhhccc
Confidence 99999999 69999999998644 7899999999 9999999999999999999998
Q ss_pred ----ccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccC
Q 043341 613 ----LISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLE 688 (758)
Q Consensus 613 ----~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~ 688 (758)
+|++|++||||+||||+|+++++|++|+|++|+|+|.+ +.+|+|++|||||+. ++++|++|+||+||++++|+
T Consensus 456 ~~~~rl~~g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~--~~~k~k~~ihWv~~~-~~~~~e~r~yd~Lf~~~~p~ 532 (851)
T 2hz7_A 456 KGFKRLTPGGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLG--EDAKAAGVIHWVSAE-RALPAEFRLYDRLFRVPHPE 532 (851)
T ss_dssp TTCCSBCTTCEEEETTTEEEEEEEEEECTTSCEEEEEEEECC--TTCCCSCEECCEETT-TCEEEEEEEECCSBSSSCTT
T ss_pred ccceecCCCCEEEecCeEEEEEEEEEecCCCCEEEEEEEEcc--cCCccCceEEEeecC-CCeeEEEEecccccCCCCcc
Confidence 59999999999999999999999999999999999964 458899999999974 68999999999999999997
Q ss_pred C----------------------------CccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeec-----C
Q 043341 689 E----------------------------GEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDV-----P 735 (758)
Q Consensus 689 ~----------------------------~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~-----~ 735 (758)
+ +++|+++|||+|+++..+++||++.++++|++|||||.|||+||+ .
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~ 612 (851)
T 2hz7_A 533 GENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRDPVELERV 612 (851)
T ss_dssp CCC----------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEEETTTEEEEECHHHHHCC
T ss_pred cccccccccccccccccccccccccccccCccHHHhcCCccceeeeeEEchhhhhCCCCCEEEEEEeeEEEEccCCCccC
Confidence 5 468999999999999999999999999999999999999999997 6
Q ss_pred CCCCCCcEEEEEcCCCCC
Q 043341 736 FTRSSKPVVLFAIPDGRQ 753 (758)
Q Consensus 736 ~~~~~~~~~~~~ip~g~~ 753 (758)
++++++| |++.|++.|.
T Consensus 613 ~~~~~~~-vfnr~v~lk~ 629 (851)
T 2hz7_A 613 DSREDAL-VFGRIITLKD 629 (851)
T ss_dssp ------C-EEEEEECSSC
T ss_pred CCCCCce-EEEeeccccc
Confidence 8888888 5999987764
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-118 Score=1004.94 Aligned_cols=516 Identities=26% Similarity=0.432 Sum_probs=421.2
Q ss_pred cccChhHHHHHHHHHhhccchHHHHHHhhhcccCCCCCcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeec
Q 043341 174 SKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLR 253 (758)
Q Consensus 174 ~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~R 253 (758)
+...|.|..-...+... ++++++++.......... +-+. ..++.-++++ ++....++||++ .|+|+||
T Consensus 33 ~~~~pelr~~~~e~~~~----~~~~v~~vn~~~~e~~~~----~l~~-~~pe~~~~~~--~~~~~~~~L~~~-~g~v~tR 100 (553)
T 3aii_A 33 MSNEPELRKMAPQVKEA----VEAAVERVNSLSPEEQQQ----EMER-LGLEITERKQ--KKRKGLRELAGV-KGEVVLR 100 (553)
T ss_dssp -----------------------------------------------------------------CCCCSSC-CSCCEEE
T ss_pred hccChhhhhhhhHHHHH----HHHHHHHHHcCCHHHHHH----HHHH-hChhhhhhhh--hhcccCCCCCCC-CCceEEE
Confidence 45667777666666444 666666654332221111 1110 0011111111 223346789998 7789999
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAE 333 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~ 333 (758)
|||||||||||||||+|++||++||+|+|+|+|||||||++|+.++|+++|++||+|||+.||++++||+|++.|+++++
T Consensus 101 FaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~ 180 (553)
T 3aii_A 101 FAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTE 180 (553)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCC
Q 043341 334 NLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNP 413 (758)
Q Consensus 334 ~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~ 413 (758)
+||++|+||+|+|+++++++.+..+++|+||++++++++++|++|.+| ..+++++|+|+++.+.|.+++|||+||+..
T Consensus 181 ~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~ 258 (553)
T 3aii_A 181 KLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPAIRDWVSMRIVE 258 (553)
T ss_dssp HHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGGGTTCEEEEECC
T ss_pred HHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCCCCCcEEEEecC
Confidence 999999999999999999999988999999999999999999999998 334689999999998899999999999988
Q ss_pred CCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhhhhh
Q 043341 414 IPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWF 493 (758)
Q Consensus 414 ~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~~~l 493 (758)
.+||+|||+|+|||||||||+||||+|||||||||.||+.|+++|.|++++||++.|.+|||++|++.|+|||||+++.+
T Consensus 259 ~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR~~~~~ 338 (553)
T 3aii_A 259 AEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREG 338 (553)
T ss_dssp SCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CHHHHHH
T ss_pred CCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEEEec
Q 043341 494 VQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLT 573 (758)
Q Consensus 494 i~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~~i~ 573 (758)
|++|+|.||||||++||++||++|++|++|++|+++.|.++++..|+++.|+++||++|++.|||+|||+ +|++|+|+
T Consensus 339 v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~--~p~kv~i~ 416 (553)
T 3aii_A 339 ILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA--DPVKLEVV 416 (553)
T ss_dssp HHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEE--SEEEEEEE
T ss_pred ccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhcc--CcEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 69999999
Q ss_pred CCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCC-
Q 043341 574 DGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEG- 652 (758)
Q Consensus 574 ~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~- 652 (758)
|+|. ++.+.+|+||+++++|+|.++|+++||||++||+ + ++||||+|||++|+++. |+|++..
T Consensus 417 n~~~-~~~~~~p~hp~~~~~G~r~v~~~~~i~ie~~D~~---~-~~vrL~~~~~i~~~~~~-----------~~~~~~~~ 480 (553)
T 3aii_A 417 GLPG-PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDLG---E-GPLRLIDAVNVIYSGGE-----------LRYHSEGI 480 (553)
T ss_dssp TCCS-CEEEEEESCTTCGGGCEEEEEESSEEEEECTTCC---S-EEEEETTTEEEEEETTE-----------EEEEECSH
T ss_pred CCCC-ceEEEecCCCCCCcCccEEEEECCEEEEEcccCC---c-CceeecCEEEEEEEEEE-----------EEEeCCch
Confidence 9873 3678999999999999999999999999999998 5 89999999999997643 6677653
Q ss_pred -Cccccc-eeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEE
Q 043341 653 -SVKNTK-LKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYF 730 (758)
Q Consensus 653 -~~kk~k-~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf 730 (758)
+.+|+| ++|||||+. ++++|+++.|+. . +..|++||++.++++||+|||||.|||
T Consensus 481 ~~~~k~k~~~i~Wv~~~-~~~~~~~~~~~~---------------------~-~~~~~~e~~~~~~~~~~~~QfeR~Gyf 537 (553)
T 3aii_A 481 EEARELGASMIHWVPAE-SALEAEVIMPDA---------------------S-RVRGVIEADASELEVDDVVQLERFGFA 537 (553)
T ss_dssp HHHHHHTCEEECCEEGG-GCEEEEEECTTS---------------------C-EEEEEECGGGGGCCTTCEEEETTTEEE
T ss_pred hhcccCCCCEEEEccCC-CceEEEEECCCC---------------------c-EEEEEEchhHhcCCCCCEEEEEEeEEE
Confidence 567888 899999963 689999996531 1 567999999999999999999999999
Q ss_pred EeecCCCCCCCcEEEEEc
Q 043341 731 RCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 731 ~~D~~~~~~~~~~~~~~i 748 (758)
+||++. +. +++||+
T Consensus 538 ~~D~~~---~~-~~~~~~ 551 (553)
T 3aii_A 538 RLDSAG---PG-MVFYYA 551 (553)
T ss_dssp EEEECS---SS-EEEEEE
T ss_pred EEeeCC---Cc-EEEEEc
Confidence 999843 22 788875
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-67 Score=599.77 Aligned_cols=301 Identities=26% Similarity=0.343 Sum_probs=256.1
Q ss_pred CCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC----
Q 043341 242 LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---- 317 (758)
Q Consensus 242 ~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---- 317 (758)
.|++ +++||||||||||||||||||||||+||++||++||+|+|||||||++|++++|+++|+++|+||||+||+
T Consensus 18 ~p~~-~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~ 96 (512)
T 4gri_A 18 GPGS-MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVV 96 (512)
T ss_dssp -------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred CCCC-CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCcc
Confidence 3554 56799999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccC
Q 043341 318 -----VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSER 384 (758)
Q Consensus 318 -----~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 384 (758)
+|+||+|++.|++++++|+++|+||+|+|+++++++.+. .+|++.||+.+.++. .++...
T Consensus 97 ~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~-------~~~~~~ 169 (512)
T 4gri_A 97 GGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEV-------ENALIK 169 (512)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHH-------HHHHHT
T ss_pred CCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhh-------hhhhhh
Confidence 469999999999999999999999999999999876542 468899999987663 223345
Q ss_pred CceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCC----cccccccccccccccccccCccEEeeCCCCCCchHHHHH
Q 043341 385 GLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGS----KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYR 460 (758)
Q Consensus 385 ~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~----~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~ 460 (758)
+.++++|+|+++.. +..++|.|.++.....+...|| +++|+||||||||||||+|||||||||+||+.+|++|.|
T Consensus 170 ~~~~~~R~k~~~~~-~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~ 248 (512)
T 4gri_A 170 KIKPVVRFKIPLEG-DTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVL 248 (512)
T ss_dssp TCCCEEEECCCSSC-EEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHH
T ss_pred hccceeeecccccC-CceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHH
Confidence 67889999998643 4567788877776555555566 448999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEeeeeeeec----ccccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHH
Q 043341 461 IQEDLGVRKVHIYEFSRLNM----VYTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEA 522 (758)
Q Consensus 461 l~~alg~~~p~~~~~~~l~~----~~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~ea 522 (758)
|+++|||+.|. |+|+++ .|+|||||+ +..|+++||+| ||+.+.- +..++.++
T Consensus 249 l~~alg~~~P~---y~H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~-------~Eifs~~e 318 (512)
T 4gri_A 249 LYKAFKWKPPI---YCHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDK-------REFFSKND 318 (512)
T ss_dssp HHHHHTCCCCE---EEEECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSS-------CCCCCHHH
T ss_pred HHHHcCCCCCe---EEecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCccc-------chhhhHHH
Confidence 99999999994 555554 478999998 78999999987 8963321 23489999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 523 LIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 523 l~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+.++|...+++++++.||++||.++|++||.......++
T Consensus 319 li~~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~~l~ 357 (512)
T 4gri_A 319 LEQFFSIEKINKSPAIFDYHKLDFFNSYYIREKKDEDLF 357 (512)
T ss_dssp HHHHCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhcCCCCCCccccHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999987766543
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-66 Score=580.01 Aligned_cols=282 Identities=25% Similarity=0.378 Sum_probs=230.4
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~ 319 (758)
.+|++..++|||||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|+++|++||+||||+||+ ++
T Consensus 17 ~~p~~~~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~ 96 (490)
T 4g6z_A 17 QGPGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPY 96 (490)
T ss_dssp -------CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred ccccccCCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCc
Confidence 45666667899999999999999999999999999999999999999999999999999999999999999999995 68
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
+||+|++.|++++++|+++|+||+|+|+++++++.|. .+|+++||+++.++ .+....+.++++|
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~--------~~~~~~g~~~~~R 168 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKV--------LPEPPAGVAPVLR 168 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCC--------CCCCCTTCCCEEE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhh--------hhhhhcCCCceEE
Confidence 9999999999999999999999999999999876542 35899999997442 1233446688999
Q ss_pred eeecC--------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHH
Q 043341 392 GKLDM--------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQ 457 (758)
Q Consensus 392 ~k~~~--------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~ 457 (758)
||++. ..++..++||||+|+|+ +||||||||||||+|||||||||+||+++|++
T Consensus 169 ~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG------------~ptY~lA~vVDD~~mgIThViRG~D~l~~tpr 236 (490)
T 4g6z_A 169 FRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDG------------TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPR 236 (490)
T ss_dssp ECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHH
T ss_pred EecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCC------------CccchhHHHHHHHhcCCCEEEeccccccChHH
Confidence 99752 12356789999999984 59999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEeeeeeeec----ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhc--
Q 043341 458 YYRIQEDLGVRKVHIYEFSRLNM----VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQG-- 531 (758)
Q Consensus 458 ~~~l~~alg~~~p~~~~~~~l~~----~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g-- 531 (758)
|.+++++|||+.| .|+|+|+ .|+|||||++ ..+|+++|++||.|++|++|+...|
T Consensus 237 q~~l~~aLG~~~P---~f~HlpLi~~~~g~KLSKR~g----------------~~sl~~~r~~G~~peal~n~l~~lG~s 297 (490)
T 4g6z_A 237 QINILRALGGEVP---VYAHLPTVLNEQGEKMSKRHG----------------AMSVMGYRDAGYLPEAVLNYLARLGWS 297 (490)
T ss_dssp HHHHHHHTTCCCC---EEEEECCEECTTSSBCCTTTT----------------CCBHHHHHHTTCCHHHHHHHHHTSSBC
T ss_pred HHHHHHHcCCCCC---eEEEecceeCCCCCcccCCCC----------------CcCHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 9999999999999 5777765 5889999983 1366666777777777666666655
Q ss_pred --------------------cccccccccHHHHHHHHHhhccccCCcchh
Q 043341 532 --------------------ASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 532 --------------------~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++++++.||++||.|+|++||+..++..++
T Consensus 298 ~~~~e~~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~~l~ 347 (490)
T 4g6z_A 298 HGDAEIFTREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDARLA 347 (490)
T ss_dssp CTTCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCccccCHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHHHHH
Confidence 557789999999999999999987765544
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-66 Score=580.44 Aligned_cols=279 Identities=22% Similarity=0.284 Sum_probs=243.4
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------c
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------V 318 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~ 318 (758)
++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 5 ~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 5 ETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred ccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHh-------cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER-------MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~-------~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
++||+|++.|++++++|+++|+||+|+|+++++++.| ..+|+++||+++.+++.+.+ .++.++++|
T Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~-------~~g~~~~iR 157 (498)
T 2ja2_A 85 YRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL-------AEGRQPVVR 157 (498)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH-------HTTCCCEEE
T ss_pred eeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh-------ccCCCceEE
Confidence 9999999999999999999999999999999987664 14699999999999876532 234577999
Q ss_pred eeecC-------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHH
Q 043341 392 GKLDM-------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQY 458 (758)
Q Consensus 392 ~k~~~-------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~ 458 (758)
+|++. ..++..+.|+||+|+| |+||||||||||||+|||||||||.||++++++|
T Consensus 158 ~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~D------------g~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q 225 (498)
T 2ja2_A 158 LRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRAS------------GDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQ 225 (498)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTT------------SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHH
T ss_pred EECCCCceEEEecccceEeecccccCcceeEccC------------CCcchhhHHHHHhhhcCCCEEEEChhhhhccHHH
Confidence 99961 1234567788888877 5699999999999999999999999999999999
Q ss_pred HHHHHHh-----CCCcceEeeee-eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcc
Q 043341 459 YRIQEDL-----GVRKVHIYEFS-RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGA 532 (758)
Q Consensus 459 ~~l~~al-----g~~~p~~~~~~-~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~ 532 (758)
.+++++| |++.|.+.|+. .++..|+|||||++. .+|++++++||+|++|++|+...|.
T Consensus 226 ~~l~~aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 226 LALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp HHHHHHHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred HHHHHHHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCC
Confidence 9999999 99999433332 145568999999963 3688888889999999988888886
Q ss_pred c-----------------------cccccccHHHHHHHHHhhccccCCcchh
Q 043341 533 S-----------------------KNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 533 ~-----------------------~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+ ++++.||++||+++|++||+..++..++
T Consensus 290 s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~ 341 (498)
T 2ja2_A 290 SIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFT 341 (498)
T ss_dssp CSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCcccccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHHHHH
Confidence 5 4567899999999999999988877654
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-66 Score=578.46 Aligned_cols=283 Identities=27% Similarity=0.373 Sum_probs=237.8
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCc---------c
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETV---------T 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~---------~ 319 (758)
+|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|++||+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999954 8
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC-
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM- 396 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~- 396 (758)
+||+|++.|++++++|+++|+||+|+|+++++++.+. .+|+++||+++.+++.+ .|.+| .++++|+|++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g----~~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRG----EPHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTT----CCCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcC----CCceEEEecCCC
Confidence 9999999999999999999999999999999877653 37999999999998765 34444 46899999973
Q ss_pred -------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHH
Q 043341 397 -------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQE 463 (758)
Q Consensus 397 -------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~ 463 (758)
..++..++|+||+|++ |+||||||||||||+|||||||||.||++|+++|.|+++
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~d------------g~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 221 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKSD------------GYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYR 221 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECTT------------SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CceEEEeccceeEeecccCCCCeEEEecC------------CCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHH
Confidence 2345678999999998 569999999999999999999999999999999999999
Q ss_pred HhCCCcceEeeeeee----ecccccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHHHHH
Q 043341 464 DLGVRKVHIYEFSRL----NMVYTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEALIQ 525 (758)
Q Consensus 464 alg~~~p~~~~~~~l----~~~~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~eal~~ 525 (758)
+||++.|. |+|+ +..|+|||||+ +..+++.|+.+ ||+.+.-. ..++.+++.+
T Consensus 222 alg~~~p~---~~h~~li~~~~g~klSKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~~~~~-------~~~~~~el~~ 291 (468)
T 1j09_A 222 AFGWEAPR---FYHMPLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-------EIFTLEEFIQ 291 (468)
T ss_dssp HHTCCCCE---EEEECCCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCC-------SCCCHHHHHH
T ss_pred HcCCCCCe---EEEeeeeeCCCCCccccccchhhHHHHHHCCCCHHHHHHHHHHhccCCcccc-------cCCCHHHHHh
Confidence 99999994 5554 55689999999 45555555544 55433210 1144455555
Q ss_pred HHHHhccccccccccHHHHHHHHHhhccc-cCCcch
Q 043341 526 FILEQGASKNLNLMEWDKLWTINKKIIDP-VCPRHT 560 (758)
Q Consensus 526 ~~~~~g~~~~~~~~d~~~l~~~n~~~l~~-~~~r~~ 560 (758)
.|....+++++..||++||+++|++||+. ..+..+
T Consensus 292 ~f~~~~~~~~~~~~d~~kl~~~N~~~i~~~~~~~~l 327 (468)
T 1j09_A 292 AFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEV 327 (468)
T ss_dssp HCCGGGCCCSCCBCCHHHHHHHHHHHHHHTSCHHHH
T ss_pred hCChhhcCccccccChHHhhhhcHHHHHhcCCHHHH
Confidence 45445566778899999999999999998 555443
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-66 Score=578.62 Aligned_cols=283 Identities=27% Similarity=0.393 Sum_probs=243.1
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~ 327 (758)
+|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC--
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ-- 397 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~-- 397 (758)
|++++++|+++|+||+|+|+++++++.|. ..|+++||+++.+++.+ +|.+| .++++|+|++..
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~---~~~~g----~~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA---FEAAG----RTPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH---HHHTT----CCCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHH---HHhCC----CCceEEEEcCCCCc
Confidence 99999999999999999999999876541 36999999999988653 45544 368999998642
Q ss_pred ------------CCCCCC-CCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHH
Q 043341 398 ------------DPNKSL-RDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQED 464 (758)
Q Consensus 398 ------------~~~~~~-~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~a 464 (758)
.++.++ +||||||++.. +|.|+|||||||+||||+|||||||||+||+.|+++|.+++++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~-------p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAPR-------GEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCCT-------TSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecCC-------CCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 244577 99999999853 2568999999999999999999999999999999999999999
Q ss_pred hCCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc----------
Q 043341 465 LGVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS---------- 533 (758)
Q Consensus 465 lg~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~---------- 533 (758)
||++.|.+.|... ++..|+|||||+++ .+|++++++||.|++|++|+...|.+
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999995444433 56679999999942 24666777777777777777666654
Q ss_pred --------------cccccccHHHHHHHHHhhccccCCcchh
Q 043341 534 --------------KNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 534 --------------~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++++.||++||+++|++||+..++..++
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N~~~i~~~~~~~l~ 332 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFL 332 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHHHHHHhcCCHHHHH
Confidence 4556899999999999999988776654
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-63 Score=553.58 Aligned_cols=266 Identities=27% Similarity=0.390 Sum_probs=227.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
+|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|++||+||||+||+ ++
T Consensus 25 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~ 104 (488)
T 3afh_A 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPY 104 (488)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCe
Confidence 599999999999999999999999999999999999999999999999999999999999999999996 48
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec----
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD---- 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~---- 395 (758)
+||+|++.|++++++|+++|+||.|+|+++++++.....|++.| +.+.+ |.++++|+|++
T Consensus 105 ~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~------------~~~~~----G~~~~iR~k~~~~~~ 168 (488)
T 3afh_A 105 RQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPH------------EYKEK----GHPVTIKFKVLPGKT 168 (488)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCH------------HHHHT----TCCEEEEECCCSSEE
T ss_pred eeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchh------------hHHhc----CCCceEEEECCCCce
Confidence 99999999999999999999999999999998765334455551 11322 34689999986
Q ss_pred ---------CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC
Q 043341 396 ---------MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG 466 (758)
Q Consensus 396 ---------~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg 466 (758)
+..++..++|+||+|+| |+|||||||+||||+|||||||||+||++|+++|.+++++||
T Consensus 169 ~~~D~v~G~~~~~~~~~~D~Vl~R~D------------G~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG 236 (488)
T 3afh_A 169 SFEDLLKGYMEFDNSTLEDFIIMKSN------------GFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG 236 (488)
T ss_dssp EEEETTTEEEEEEGGGSCCEEEECTT------------SCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT
T ss_pred eEEeccceeEeecCCCCCCeEEEecC------------CCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC
Confidence 11233567999999998 569999999999999999999999999999999999999999
Q ss_pred CCcceEeeeeee----ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc---------
Q 043341 467 VRKVHIYEFSRL----NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS--------- 533 (758)
Q Consensus 467 ~~~p~~~~~~~l----~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~--------- 533 (758)
|+.| .|+|+ +..|+|||||++. .+|++++++||.|++|++|+...|.+
T Consensus 237 ~~~P---~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~ 297 (488)
T 3afh_A 237 WEAP---VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTI 297 (488)
T ss_dssp CCCC---EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCH
T ss_pred CCCC---eEEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCH
Confidence 9999 45554 5568899999942 25666777777777777777666654
Q ss_pred -------------cccccccHHHHHHHHHhhccccCCcchh
Q 043341 534 -------------KNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 534 -------------~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+++..||++||+++|++||+..++..++
T Consensus 298 ~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~ 338 (488)
T 3afh_A 298 EEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLK 338 (488)
T ss_dssp HHHGGGCCGGGSCSSCEECCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHhhCChhhcCccccccChHHhhhccHHHHhcCCHHHHH
Confidence 4568899999999999999988776654
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-60 Score=531.17 Aligned_cols=287 Identities=27% Similarity=0.349 Sum_probs=233.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
-|||||||||||+|||||+|+|++||++||.+||+|||||||||++|+.++++++|+++|+|||++||+ ++
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 48
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCc--CCCCCHHHHHHHHHHHhcCccCCceee
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESK--CRNNSIEENMKLWKEMIAGSERGLECC 389 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~--~r~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (758)
+||+|++.|++++++|+++|+||.|+|+.+++++.|. ..|++. ||+++.+++.+ .|.+| .+.+
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G----~~~~ 165 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKG----LRPA 165 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTT----CCCE
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcC----Ccce
Confidence 9999999999999999999999999999987765431 258888 99999888654 35444 3679
Q ss_pred EEeeecC-------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchH
Q 043341 390 LRGKLDM-------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456 (758)
Q Consensus 390 ~R~k~~~-------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~ 456 (758)
+|+|++. ..++..++|+||+|+| |+|||||||+||||+|||||||||.||+.|++
T Consensus 166 iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsD------------G~ptY~~a~vvDD~~~githvirG~D~~~~t~ 233 (481)
T 2o5r_A 166 VFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSN------------GLPTYNFACVVDDMLMEITHVIRGDDHLSNTL 233 (481)
T ss_dssp EEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTT------------SCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEEEcCCCceEEEecccceeEeccccCCCeEEEccC------------CCcchhhHHHHHHHhCCCCeEEEChhHHHhHH
Confidence 9999863 1245678899999998 45999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcceEeeeee-eecccccccchhh----hhhhhcCccC----------CCCCCCcchHHHHHHcCCCHH
Q 043341 457 QYYRIQEDLGVRKVHIYEFSR-LNMVYTLLSKRKL----LWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 457 ~~~~l~~alg~~~p~~~~~~~-l~~~~~klSKR~~----~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~e 521 (758)
+|.+++++||++.|.+.|+.. ++..|+|||||++ ..++++|+++ ||+.|.-.. -++.+
T Consensus 234 ~q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e-------~~~~~ 306 (481)
T 2o5r_A 234 RQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGKE-------LLTLE 306 (481)
T ss_dssp HHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCC-------CCCHH
T ss_pred HHHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCcccc-------cCCHH
Confidence 999999999999995444432 4567899999994 4444444432 443311000 02333
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 522 ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 522 al~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++..+|....+++++..||++||+++|++||+..++..++
T Consensus 307 e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~~l~ 346 (481)
T 2o5r_A 307 ELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLA 346 (481)
T ss_dssp HHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHHHHH
Confidence 3333333334556788999999999999999988776654
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-60 Score=545.42 Aligned_cols=267 Identities=27% Similarity=0.386 Sum_probs=233.3
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------c
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------V 318 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~ 318 (758)
.+|+|||||||||+|||||+|+|++||++||+|||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred ccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec---
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD--- 395 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~--- 395 (758)
++||+|++.|++++++|+++|+||.|+|+++++++.....|++.| +.+.+ |.++++|+|++
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~------------~~~~~----g~~~~iR~k~~~~~ 271 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPH------------EYKEK----GHPVTIKFKVLPGK 271 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCH------------HHHHT----TCCEEEEECCCSSC
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHH------------HHhhc----CCCceEEEECCCCC
Confidence 799999999999999999999999999999988765334455541 12333 34689999987
Q ss_pred ----------CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh
Q 043341 396 ----------MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465 (758)
Q Consensus 396 ----------~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al 465 (758)
+..++..++|+||+|++ |+|||||||+||||+|||||||||.||++|+++|.|++++|
T Consensus 272 ~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------g~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~al 339 (592)
T 3al0_C 272 TSFEDLLKGYMEFDNSTLEDFIIMKSN------------GFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAF 339 (592)
T ss_dssp CEECCTTTCSEECCSSSSCCEEEECTT------------SCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTT
T ss_pred ceeeecccceeeeccccCCCeEEEcCC------------CCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHh
Confidence 22345678999999998 56999999999999999999999999999999999999999
Q ss_pred CCCcceEeeeeeee----cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc--------
Q 043341 466 GVRKVHIYEFSRLN----MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS-------- 533 (758)
Q Consensus 466 g~~~p~~~~~~~l~----~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~-------- 533 (758)
||+.| .|+|++ ..|+|||||++. .+|++++++||.|++|++|+...|.+
T Consensus 340 g~~~P---~~~hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s 400 (592)
T 3al0_C 340 GWEAP---VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFT 400 (592)
T ss_dssp TCCCC---BCCEECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCC
T ss_pred CCCCC---eEEEeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCC
Confidence 99999 566664 458899999953 36888999999999999999887765
Q ss_pred --------------cccccccHHHHHHHHHhhccccCCcchh
Q 043341 534 --------------KNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 534 --------------~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+++..||++||+++|++||+..++..++
T Consensus 401 ~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~ 442 (592)
T 3al0_C 401 IEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLK 442 (592)
T ss_dssp TTTTGGGCCTTSBCSSCCBCCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhhCChhhcCcccceeCHHHHhhhhHHHhhcCCHHHHH
Confidence 3456899999999999999988776554
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-60 Score=499.45 Aligned_cols=239 Identities=23% Similarity=0.281 Sum_probs=199.2
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHH
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFP 326 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~ 326 (758)
++|||||||||||+|||||+|+||+||++||+++|+|+|||||||++|+.++++++|++||+||||+||+ +++||+|++
T Consensus 4 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~ 83 (298)
T 1nzj_A 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHD 83 (298)
T ss_dssp CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHH
T ss_pred CCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC---------
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ--------- 397 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~--------- 397 (758)
.|++++++|+++|+||.|.|+++++++... .|++.||+++.+ +...++|+|++..
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-~Y~g~cr~~~~~---------------g~~~~~R~r~~~~~~~f~D~~~ 147 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGG-IYDGHCRVLHHG---------------PDNAAVRIRQQHPVTQFTDQLR 147 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTS-SCCCTTTTTCCC---------------STTCEEEECCSSCCCEEEETTT
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCC-CCCCccccCCcC---------------CCCCcEEEecCCcccceehhhC
Confidence 999999999999999999999999987533 699999987643 3356899988631
Q ss_pred -----CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceE
Q 043341 398 -----DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHI 472 (758)
Q Consensus 398 -----~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~ 472 (758)
..+.+++||||+|++ |+|||||||+|||++|||||||||.||+.++++|.+++++||++.|.+
T Consensus 148 G~~~~~~~~~~~D~VL~R~d------------G~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~ 215 (298)
T 1nzj_A 148 GIIHADEKLAREDFIIHRRD------------GLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDY 215 (298)
T ss_dssp EEEECCHHHHHSCCEEECTT------------SCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEE
T ss_pred cccccCcccCCCCEEEECCC------------CCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeE
Confidence 111467899999987 569999999999999999999999999999999999999999999987
Q ss_pred eeeeee-ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH
Q 043341 473 YEFSRL-NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV 520 (758)
Q Consensus 473 ~~~~~l-~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ 520 (758)
+|+..| +..|+|||||+++..|++. +|+.+++++|+++|+++
T Consensus 216 ~H~pll~~~~g~KLSKR~g~~~v~~~------~~~~~~~~~l~~lG~~~ 258 (298)
T 1nzj_A 216 IHLPLALNPQGAKLSKQNHAPALPKG------DPRPVLIAALQFLGQQA 258 (298)
T ss_dssp EEECBCCC-------------CCCSS------CCHHHHHHHHHHTTCCC
T ss_pred EEeeeeECCCCCcccccCCccChhcC------CccHHHHHHHHHcCCCC
Confidence 766665 7789999999988776653 66777777777777654
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=275.52 Aligned_cols=260 Identities=15% Similarity=0.212 Sum_probs=193.8
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-------------chHHHHHHHHHHHHHhCCCC
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK-------------ESNEFVDNLLKDIETLGIKY 315 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r-------------~~~~~~~~i~~dl~~LGi~~ 315 (758)
-.|+|+|++||||+|+.++.+.++| +|+..|+.+++|+|.+. ..++|++.+.+++++|||.+
T Consensus 31 cGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~ 110 (462)
T 3tqo_A 31 CGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLS 110 (462)
T ss_dssp CCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999998877777 57779999999999642 34578999999999999999
Q ss_pred C-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 316 E-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 316 d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
| ..+++|+|++.+++++++|+++|+||......--+.-.+...|+..++ ++.++ |..|. |...
T Consensus 111 d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~-~~~~~-------~~~g~--------r~~~ 174 (462)
T 3tqo_A 111 PDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSH-RHLDE-------LQAGA--------RVEV 174 (462)
T ss_dssp CSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTT-CSCC-------------------------
T ss_pred CccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccC-CChHH-------hhccC--------cccc
Confidence 7 456999999999999999999999995410000000111123433333 22222 32221 2222
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccccc-cc--CccEEeeCCCCC-CchHHHHHHHHHh-CCC
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFVDA-KE--GITHALRSSEYH-DRNAQYYRIQEDL-GVR 468 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vdD~-~~--githvirg~d~~-~~~~~~~~l~~al-g~~ 468 (758)
...+.+..||+|||.....+|.|.++| .|+|+||++|++... .. .++-..-|.|++ .|.....+...++ |.+
T Consensus 175 --~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~p 252 (462)
T 3tqo_A 175 --SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKP 252 (462)
T ss_dssp ----CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSSC
T ss_pred --ccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCCC
Confidence 234567789999999988899999999 999999999987532 22 344334577776 5666666666654 777
Q ss_pred cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 469 KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 469 ~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
.+.+|.| ++|.+.|+|||||++ ++.|++++++. |+++++|.|+++. +++++.+|+.+.|...
T Consensus 253 ~~~~w~H~g~v~~~G~KMSKSlG---------------N~i~~~dll~~-~g~dalR~~lls~-~yr~~l~fs~~~l~~a 315 (462)
T 3tqo_A 253 FVKLWMHAGLLEINKEKMSKSLG---------------NIISIREALKE-SDVEVLRYFLLSG-HYRNPLSYSKENLENG 315 (462)
T ss_dssp CEEEEEEECCEEETTEECCTTTT---------------CCCBHHHHHHH-SCHHHHHHHHHHS-CTTSCEEECHHHHHHH
T ss_pred cceEEEEccEEecCCcCccccCC---------------CcccHHHHHhh-cChHHhhhhhccC-CCCCCcCcCHHHHHHH
Confidence 7889988 799999999999997 45699999988 9999999999985 8999999999999876
Q ss_pred H
Q 043341 548 N 548 (758)
Q Consensus 548 n 548 (758)
.
T Consensus 316 ~ 316 (462)
T 3tqo_A 316 R 316 (462)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=274.28 Aligned_cols=260 Identities=16% Similarity=0.211 Sum_probs=194.1
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-------------chHHHHHHHHHHHHHhCCCC-
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK-------------ESNEFVDNLLKDIETLGIKY- 315 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r-------------~~~~~~~~i~~dl~~LGi~~- 315 (758)
.|+|+|++||||+|++++.+.+|| +|+..|+.+++|+|.+. ..+++.+.+.+++++|||.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999999998 57789999999999642 24478999999999999997
Q ss_pred CCcccccCCHHHHHHHHHHHHHhCceecc-CCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 316 ETVTYTSDYFPDLMEMAENLIRQGKAYVD-DTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 316 d~~~~~S~~~~~~~~~~~~Li~~G~aY~~-~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
|..+++|+|.+.+++++++|+++|+||.+ ..+ .-+.......|...|.. +++ +|.+|. |+..
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~-v~f~~~~~~~yg~lsg~-~~~-------~l~~g~--------rv~~ 171 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGD-VMFDVPTDPTYGVLSRQ-DLD-------QLQAGA--------RVDV 171 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSC-EEECGGGCTTTTTTTTC-----------------------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCC-EEEecccccccccccCC-CHH-------HhhcCC--------cccc
Confidence 67889999999999999999999999976 210 00011112234444443 222 233331 2222
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc-ccccCccEEee--CCCCC-CchHHHHHHHHH-hCCC
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV-DAKEGITHALR--SSEYH-DRNAQYYRIQED-LGVR 468 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd-D~~~githvir--g~d~~-~~~~~~~~l~~a-lg~~ 468 (758)
.....+..||++||.....++.|.++| .|+|+||++|++. ....|.++.|. |.|++ .|.........+ +|.+
T Consensus 172 --~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~ 249 (461)
T 1li5_A 172 --VDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQ 249 (461)
T ss_dssp -----CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSC
T ss_pred --hhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCCC
Confidence 123345689999999766778899999 8999999999863 33346677777 89955 455455554455 4888
Q ss_pred cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 469 KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 469 ~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
.|.+|.| +++.+.|+|||||++ ++.|+++++++ |+++++|.|+++ ++++++.+|+++.|...
T Consensus 250 ~~~~~~h~g~v~~~G~KMSKS~G---------------N~v~~~dll~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~~ 312 (461)
T 1li5_A 250 YVNYWMHSGMVMVDREKMSKSLG---------------NFFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQA 312 (461)
T ss_dssp CEEEECCBCCEEETTBCCCGGGT---------------CCCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHHH
T ss_pred CCcEEEEeeEEEECCeEccccCC---------------CccChhHHhhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHHH
Confidence 8888877 899999999999997 34589999988 999999999998 69999999999999887
Q ss_pred HHh
Q 043341 548 NKK 550 (758)
Q Consensus 548 n~~ 550 (758)
.+.
T Consensus 313 ~~~ 315 (461)
T 1li5_A 313 RAA 315 (461)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=236.46 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=140.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|+|| +.+.||++++||++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++++
T Consensus 21 ~~MKLy--~~~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL~~~~~~ 98 (225)
T 4glt_A 21 QSMKLL--YSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPV 98 (225)
T ss_dssp CCCEEE--ECSSCHHHHHHHHHHHHHTCCCEEEECCTTCSSSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHTTCSS
T ss_pred cCceEe--cCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHHHHhCCc
Confidence 679999 999999999999999999999998654 9999999989999999999999999999
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
.++|.++.+|+++++|+.+....+.+ +.+.+.|+.||++|++++||+|+++|+||
T Consensus 99 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~AD 178 (225)
T 4glt_A 99 AHLIPQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLAD 178 (225)
T ss_dssp CCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCCHHHHHHHHHHHHHHHHHHHHHTTTCSSSSTTSCCHHH
T ss_pred cccCCchhHHHHHHHHHHHHHhcccchHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcccHhH
Confidence 68999999999999999887665431 46777899999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
|++++.+.++..........+.||+|.+|+++|.++ |+|+++
T Consensus 179 i~l~~~l~~~~~~~~~~~~~~~~P~l~~w~~r~~~r--Ps~k~t 220 (225)
T 4glt_A 179 IAVGCMLGYLELRYQHLDWKQQYPNLARHYAAMMKR--ASFKDT 220 (225)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHCHHHHHHHHHHHTC--HHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCccccCHHHHHHHHHHHCC--HHHHHh
Confidence 999999998744444555567899999999999999 999865
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=252.65 Aligned_cols=262 Identities=16% Similarity=0.215 Sum_probs=176.4
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC----------Ccc-------------cchHHHHHHHHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT----------NPA-------------KESNEFVDNLLK 306 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt----------d~~-------------r~~~~~~~~i~~ 306 (758)
.|+|+|++||||||+.++.+.++| +|...|+.+|+|+ |.+ ...++|++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 699999999999999998877776 6888999999998 432 224478999999
Q ss_pred HHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCC
Q 043341 307 DIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERG 385 (758)
Q Consensus 307 dl~~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~ 385 (758)
+++.|||.+| ..+..++|++.+++++++|+++|+||....+. -+...+...|...+ .++.. ++|..|.
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~V-yf~v~~f~~yG~ls-~~~~~------~~~~~g~--- 197 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNV-YFDTSCFKSYGEMA-GIDLI------DKDMTLP--- 197 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEE-EECGGGCTTTTTTT-C--------------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcE-EecCCccCCccccC-CCChh------hhhccCC---
Confidence 9999999998 45678999999999999999999999432100 00001112233222 22220 1243331
Q ss_pred ceeeEEeeecCCCCCCCCCCcEEEEe---CCCCCcccCCcc-ccccccccccccc--cccc-CccEEeeCCCCC-CchHH
Q 043341 386 LECCLRGKLDMQDPNKSLRDPVYYRC---NPIPHHRIGSKY-KVYPTYDFACPFV--DAKE-GITHALRSSEYH-DRNAQ 457 (758)
Q Consensus 386 ~~~~~R~k~~~~~~~~~~~D~vl~R~---~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~-githvirg~d~~-~~~~~ 457 (758)
| ++....+.+..||++||. +....+.|.++| .|+|+||++|++. .++. .++--.-|.|++ .|...
T Consensus 198 -----r--~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhen 270 (501)
T 3sp1_A 198 -----R--VDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHIN 270 (501)
T ss_dssp -------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHH
T ss_pred -----c--cCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHHH
Confidence 1 222234457789999998 223457799999 9999999999763 3332 123222377877 67777
Q ss_pred HHHHHHHh-CCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccc
Q 043341 458 YYRIQEDL-GVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535 (758)
Q Consensus 458 ~~~l~~al-g~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~ 535 (758)
..+...++ |-+.+.+|.| ++|.++|+|||||.++ +.|+++++++||+++++|.|+++. ++++
T Consensus 271 eiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~lls~-~yr~ 334 (501)
T 3sp1_A 271 EIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLCLTS-HYRN 334 (501)
T ss_dssp HHHHHHHHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHHHTS-CTTS
T ss_pred HHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHHHhc-cCCC
Confidence 77777766 5566789999 8999999999999974 459999999999999999999987 9999
Q ss_pred cccccHHHHHHHHHh
Q 043341 536 LNLMEWDKLWTINKK 550 (758)
Q Consensus 536 ~~~~d~~~l~~~n~~ 550 (758)
+.+|+.+.|....+.
T Consensus 335 ~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 335 QLKFSLDNLQASKIA 349 (501)
T ss_dssp CEECCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHh
Confidence 999999999876555
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=251.44 Aligned_cols=270 Identities=14% Similarity=0.171 Sum_probs=181.3
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-------------chHHHHHHHHHHHHHhC
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK-------------ESNEFVDNLLKDIETLG 312 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r-------------~~~~~~~~i~~dl~~LG 312 (758)
+--..|+|+|++||||+|++++.+.+|| +|+..|+..++|.+.+. ..+.+.+.|.++|++||
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4455899999999999999999999888 48889999999998542 24578899999999999
Q ss_pred CC-CCCcccccCCHHHHHHHHHHHHHhCceeccCCc--hH-HHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCcee
Q 043341 313 IK-YETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP--RE-QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388 (758)
Q Consensus 313 i~-~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~--~e-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 388 (758)
|. +|..+++|+|.+.+++++++|+++|++|.+.++ .. -++-.+...|...| ....++.+..+. ++ +.+.
T Consensus 122 i~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~-~~~~~~~~~~~~---~~---~~~~ 194 (414)
T 3c8z_A 122 VLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES-GYDRDTMLTLFA---ER---GGDP 194 (414)
T ss_dssp CCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTTTT-CCCHHHHHHHHH---HT---TCCT
T ss_pred CCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHhhc-CCCHHHHHHHHh---hc---cccc
Confidence 99 888888999999999999999999999976532 00 00111111111111 223333221110 11 0000
Q ss_pred eEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc--cccc-cCccEEeeCCCCC-CchHHHHHHHH
Q 043341 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF--VDAK-EGITHALRSSEYH-DRNAQYYRIQE 463 (758)
Q Consensus 389 ~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v--dD~~-~githvirg~d~~-~~~~~~~~l~~ 463 (758)
+ .....+.+|+++||+....++.|.++| .|+|+||++|.. ..++ ..++.-+-|.|++ .|......+..
T Consensus 195 ------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~ 267 (414)
T 3c8z_A 195 ------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAE 267 (414)
T ss_dssp ------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred ------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHH
Confidence 0 112345679999998777788898899 899999998742 1111 1122222255544 35555455555
Q ss_pred Hh-CC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccccccccc
Q 043341 464 DL-GV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540 (758)
Q Consensus 464 al-g~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d 540 (758)
++ |. +.+.+|.| ++|.+.|+|||||+++ +.++++++++|++++++|.|+++ +..+++.+|+
T Consensus 268 a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs 331 (414)
T 3c8z_A 268 SVTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWS 331 (414)
T ss_dssp HHHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCC
T ss_pred HhcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCcCCCCCcC
Confidence 65 77 45567777 7999999999999974 45899999999999999999998 7999999999
Q ss_pred HHHHHHHHHh
Q 043341 541 WDKLWTINKK 550 (758)
Q Consensus 541 ~~~l~~~n~~ 550 (758)
++.|...++.
T Consensus 332 ~~~l~~~~~~ 341 (414)
T 3c8z_A 332 NEVLDEANAR 341 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988775
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-27 Score=274.15 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=159.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHH-----HcccCceEEEEecCCCcccch---------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYF-----AQRYQGQLIVRFDDTNPAKES--------------------------- 297 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~-----Ar~~~G~~ilRieDtd~~r~~--------------------------- 297 (758)
++..-+|||||++||||+|+++++|++ +++|+|.|++||||+|+.+..
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 555559999999999999999999777 568999999999999954433
Q ss_pred ---HHHHHHHHHHHHHhCCCCCCcccccC-CHH-HHHHHHHHHHHhC-ceeccCCchHHHHH----H-------hcCCCC
Q 043341 298 ---NEFVDNLLKDIETLGIKYETVTYTSD-YFP-DLMEMAENLIRQG-KAYVDDTPREQMQK----E-------RMDGIE 360 (758)
Q Consensus 298 ---~~~~~~i~~dl~~LGi~~d~~~~~S~-~~~-~~~~~~~~Li~~G-~aY~~~~~~e~~~~----~-------~~~~~~ 360 (758)
+++.+.|+++|+||||.||.+ +||+ |.+ .|.+++++|+++| .+|.|. +..+. . ....+.
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~---~~~~g~~~~~~y~~~~~~~~~~~ 177 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEIL---NKYREIAKQPPLPENWWPAMVYC 177 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHH---HHHHHHTTCCCCCTTCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHH---HhhccccccccccCCceeccccc
Confidence 449999999999999999976 9999 988 9999999999999 666442 11111 0 000122
Q ss_pred CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc--ccccccc--------
Q 043341 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY--KVYPTYD-------- 430 (758)
Q Consensus 361 ~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~--~~~PtY~-------- 430 (758)
..|+..+.+ ...+ . ...+-|+. ...++.|.|.| .|+|+|+
T Consensus 178 ~~~~~~~~~----------------------~~~~--~-----~~~~~f~~-~~g~~~~~d~~~G~g~~~w~~d~~~~~~ 227 (523)
T 1irx_A 178 PEHRREAEI----------------------IEWD--G-----GWKVKYKC-PEGHEGWVDIRSGNVKLRWRVDWPMRWS 227 (523)
T ss_dssp TTTCCEECE----------------------EEEC--S-----SSCEEECC-SSSCCCEECTTSSCEEECHHHHHHHHHH
T ss_pred hhhCCcccc----------------------cccC--C-----CCceeeee-cCCCccccCCcCCCCCCCCCcchHhhHH
Confidence 334332100 0010 0 01233333 23455677777 6666665
Q ss_pred -ccccccccccCccEEeeC--CCCCCchHHHHHHHHHhCCCcceEeeeeeeecc--cccccchhhhhhhhcCccCCCCCC
Q 043341 431 -FACPFVDAKEGITHALRS--SEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMV--YTLLSKRKLLWFVQNGKVDGWDDP 505 (758)
Q Consensus 431 -~a~~vdD~~~githvirg--~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~--~~klSKR~~~~li~~g~~~gwddp 505 (758)
|+++|| .||++|+.+| .||. .+.. +++||++.|.+.|++++... |+|||||+++
T Consensus 228 ~l~~~vd--~~G~Dh~~~h~s~~~~----~~i~-~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn-------------- 286 (523)
T 1irx_A 228 HFGVDFE--PAGKDHLVAGSSYDTG----KEII-KEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN-------------- 286 (523)
T ss_dssp HSCCCBC--CEEHHHHSTTSHHHHH----HHHH-HHHHCCCCCBCCEECCEEESCC---------C--------------
T ss_pred HcCCCCc--CCCcCccCCCcchhhH----HHHH-HHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC--------------
Confidence 555554 6677777554 2322 2333 27999988877777888887 8899999963
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHhccccccccccHH-HHHHHH
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD-KLWTIN 548 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~-~l~~~n 548 (758)
..++.++++. |.|+++|+|++.. ..+++..|+++ .|....
T Consensus 287 -~i~~~~~~~~-~~pdalR~~l~~~-~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 287 -VILLSDLYEV-LEPGLVRFIYARH-RPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp -CCCHHHHHTT-SCHHHHHHHHHSS-CTTSCEEECCSTTHHHHH
T ss_pred -CCCHHHHHHH-cCHHHHHHHHHhc-CCCCCceeCcchhHHHHH
Confidence 3488999999 9999999999976 45778888888 555443
|
| >3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=225.48 Aligned_cols=158 Identities=19% Similarity=0.377 Sum_probs=138.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++
T Consensus 1 M~mkLY--~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d-~g~~l~eS~aI~~YL~~~ 77 (216)
T 3vk9_A 1 MTIDLY--YVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVD-DGLSIWESRAIITYLVNK 77 (216)
T ss_dssp CCCEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEE-TTEEECCHHHHHHHHHHH
T ss_pred CCEEEE--eCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEec-CCceeechHHHHHHHHHh
Confidence 889999 999999999999999999999998643 99999986 999999999999999998
Q ss_pred C----CCCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 99 G----NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 99 ~----~L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
+ .|+|.++.+++.+++|+.|....+.+ +.+.+.|+.||++|++++|++|+++|+|
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 157 (216)
T 3vk9_A 78 YAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVA 157 (216)
T ss_dssp HCTTCTTSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHH
T ss_pred cCcccCCCCCCHHHHHHhhhhHHHHhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCHH
Confidence 8 58999999999999999987765442 5678899999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
||++++.+.++.. .+.+ .+.||+|.+|+++|.++. |+|++++++
T Consensus 158 Di~~~~~l~~~~~--~~~~-~~~~P~l~~w~~r~~a~~-P~~~~a~~~ 201 (216)
T 3vk9_A 158 DLSLIASVSSLEA--SDID-FKKYANVKRWYETVKSTA-PGYQEANEK 201 (216)
T ss_dssp HHHHHHHHHHGGG--TTCC-GGGSHHHHHHHHHHHHHS-TTHHHHTHH
T ss_pred HHHHHHHHHHHHH--cCCC-chhCHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9999999998632 3333 578999999999997642 899988664
|
| >4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=222.53 Aligned_cols=155 Identities=15% Similarity=0.269 Sum_probs=135.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +. +++++++|+++|+++|++|+.+.+ |+||+|++++|.+|+||.||++||++++
T Consensus 4 ~kLY--~~-p~s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~YL~~~~~ 80 (215)
T 4gf0_A 4 LTLY--FT-PGTISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDYVAAIAP 80 (215)
T ss_dssp EEEE--EC-TTSTHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHHHHHHCG
T ss_pred EEEE--eC-CCCcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHHHHHhCC
Confidence 6998 54 578999999999999999998653 9999999888999999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCC
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLS 151 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lT 151 (758)
.|+|.++.+++++++|+.+..+.+.+ +.+...++.||++|++++|++|+++|
T Consensus 81 ~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~~~l~G~~~t 160 (215)
T 4gf0_A 81 KAGLVPTDPTAAAQMRSAMYYLASTMHVAHAHKMRGSRWAKQQSSFEDMTAQVPETMAACADFVESDILRGPYVLGEDFS 160 (215)
T ss_dssp GGCCSCSSHHHHHHHHHHHHHHHHTHHHHHHTTTCGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSBTTBSSCC
T ss_pred CcccCCCChHHhHHHHHhhhhhccccchhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhccCccccCCCCc
Confidence 79999999999999999887655431 45667788999999999999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|||++++.+.++.. .+.+ .+.||+|.+|+++|.++ |+|+++.++
T Consensus 161 ~ADi~~~~~l~~~~~--~~~~-~~~~P~l~~w~~r~~~r--Ps~~~~~~~ 205 (215)
T 4gf0_A 161 LADPYLFVVCNWLDG--DGVD-TAAYPKITTFMQQMTAR--ASVAAVKDK 205 (215)
T ss_dssp THHHHHHHHHTTTTT--TTCC-GGGCHHHHHHHHHHHTS--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--cCCC-cccCHHHHHHHHHHHcC--HHHHHHHHH
Confidence 999999999998632 3333 57899999999999999 999998765
|
| >4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=220.65 Aligned_cols=155 Identities=16% Similarity=0.295 Sum_probs=135.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +. +++|+++||++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++++
T Consensus 4 mkLY--~~-p~s~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~YL~~~~ 80 (211)
T 4gci_A 4 MKLF--YK-PGACSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQYLADKV 80 (211)
T ss_dssp EEEE--EC-TTSTTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHHHHHHC
T ss_pred EEEE--eC-CCCcHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHHHHhcC
Confidence 7998 55 577999999999999999987532 9999999988899999999999999998
Q ss_pred ---C-CCCCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---N-FYGQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~-L~p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
. ++|.++.+++++++|+.+....+.. +.+.+.|+.||++|++++|++|+++|+|||+
T Consensus 81 ~~~~ll~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 160 (211)
T 4gci_A 81 PDRHLIAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTIVRERLDKQFSYVDSVLAEHDYLLGKKFSVADAY 160 (211)
T ss_dssp GGGCSSCCTTSHHHHHHHHHHHHHHHHTTGGGHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSSCCHHHHH
T ss_pred CCcccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhccccchhhHhhhHHHHHHHHHHHHHHHhcCCccCCCCccHHHHH
Confidence 3 5689999999999999988776652 5678889999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.+... .+.. .+.+|+|.+|+++|.++ |+|++++++
T Consensus 161 ~~~~l~~~~~--~~~~-~~~~p~l~~w~~r~~~r--Ps~k~~l~~ 200 (211)
T 4gci_A 161 LFTVSRWANA--LNLQ-IKERSHLDQYMARVAER--PAVKAALAA 200 (211)
T ss_dssp HHHHHHHHHH--TTCC-CSSCHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCC-cccCHHHHHHHHHHHhC--HHHHHHHHh
Confidence 9999998632 2332 57899999999999999 999999864
|
| >4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-25 Score=220.78 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=135.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.||++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ .
T Consensus 4 m~LY--~~~~sP~~~rvr~~L~e~gi~~e~~~v~~~~~~~~~~~~nP~g~vPvL~~-~~~~l~ES~aI~~yL~~~~~~~~ 80 (210)
T 4hoj_A 4 MTLY--SGITCPFSHRCRFVLYEKGMDFEIKDIDIYNKPEDLAVMNPYNQVPVLVE-RDLVLHESNIINEYIDERFPHPQ 80 (210)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHSCSSC
T ss_pred EEEe--cCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCCHHHHHHCCCCCCcEEEE-CCEEEeccHHHHHHHHHhccCCC
Confidence 7999 999999999999999999999998654 99999997 8999999999999999998 6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
|+|.++.+++++++|+.+....+.+ +.+.+.|+.||++|++++|++|+++|+|||++++.+
T Consensus 81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~l 160 (210)
T 4hoj_A 81 LMPGDPVMRGRGRLVLYRMEKELFNHVQVLENPAAANKEQAKAREAIGNGLTMLSPSFSKSKYILGEDFSMIDVALAPLL 160 (210)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSCC---CCBTTBSSCCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHhHHHHHHHHHHHhccCCccCCCcchhhHHHHHHHH
Confidence 9999999999999999887766542 567888999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.++.. .+......+|+|.+|++++.++ |+|++++..
T Consensus 161 ~~~~~--~~~~~~~~~p~l~~w~~r~~~r--p~~~~~~~~ 196 (210)
T 4hoj_A 161 WRLDH--YDVKLGKSAAPLLKYAERIFQR--EAFIEALTP 196 (210)
T ss_dssp HTTTT--TTCCCCGGGHHHHHHHHHHHTS--HHHHHHCCH
T ss_pred HHHHH--cCCCccccCHHHHHHHHHHHCC--HHHHHHCCh
Confidence 98632 3334456899999999999999 999998643
|
| >4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=219.85 Aligned_cols=156 Identities=14% Similarity=0.269 Sum_probs=136.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
.+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 4 piLY--~~~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d-~~~~l~eS~aI~~YL~~~~~ 80 (228)
T 4hi7_A 4 PILY--GIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLED-GDANIADSHAIMAYLVSKYG 80 (228)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHHC
T ss_pred eEEE--ECCCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEEE-CCEEEechHHHHHHHHHhhc
Confidence 4688 899999999999999999999997643 99999997 8899999999999999987
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCCh-----------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSSG-----------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~~-----------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
.|+|.++.+++++++|+.|....+.. +.+.+.|+.||++|++++||+|+++|+|
T Consensus 81 ~~~~L~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 160 (228)
T 4hi7_A 81 KDDSLYPKDLVKRALVDNRMYFESGVVFANALRSLAKMILFLGKTEVPQERIDAITEAYDFVEAFFKDQTYVAGNQLTIA 160 (228)
T ss_dssp SSSTTSCSSHHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHTSCCCEEEHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHH
T ss_pred cCCCCCchhHHHHHHhhchhhhhhhhhcchhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHcccccccCCCCCHH
Confidence 59999999999999999987765441 5678889999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
||++++.+.++.. .... ..+.||+|.+|+++|.++ |+|++....
T Consensus 161 Di~l~~~l~~~~~-~~~~-~~~~~P~l~~w~~r~~~r--Pa~~e~~~~ 204 (228)
T 4hi7_A 161 DFSLISSISSLVA-FVPV-DAAKYPKLSAWIKRLEQL--PYYAENSTG 204 (228)
T ss_dssp HHHHHHHHHHHTT-TSCC-CTTTCHHHHHHHHHHTTS--TTTHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCC-CchhCHHHHHHHHHHHcC--HHHHHhchh
Confidence 9999999987622 2222 267899999999999999 999997654
|
| >3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=221.68 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=140.2
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|.|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++.+
T Consensus 1 Mm~~Ly--~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL~~~~~~ 78 (226)
T 3tou_A 1 MVMKLI--GSHASPYTRKVRVVLAEKKIDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADTLSPV 78 (226)
T ss_dssp -CCEEE--ECSSCHHHHHHHHHHHHTTCCCEEEECCTTSTTCCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHHSCSS
T ss_pred CeEEEe--cCCCCchHHHHHHHHHHcCCCcEEEecCccCCcHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHHHHHhCCC
Confidence 558999 999999999999999999999998653 8999999779999999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh-------------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG-------------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~-------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
.|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|++++|++|+++|+|
T Consensus 79 ~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~T~A 158 (226)
T 3tou_A 79 ARLIPPSGRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITRQHHKIDEALKAMSRGLADRTWCNGNHLTLA 158 (226)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSTTSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHH
Confidence 59999999999999999887543221 3577889999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~ 203 (758)
||++++.+.++............||+|.+|+++|.++ |++++++.+..
T Consensus 159 Di~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~~~ 206 (226)
T 3tou_A 159 DIAVGCALAYLDFRQPQVDWREQHANLAAFYTRIEKR--PSFLETQPQAE 206 (226)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHCHHHHHHHHHHHTS--HHHHTTCGGGG
T ss_pred HHHHHHHHHHHHhhccccchhhcChHHHHHHHHHhcC--HHHHHhCcchh
Confidence 9999999987633333333457899999999999999 99999877653
|
| >4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=224.55 Aligned_cols=159 Identities=14% Similarity=0.258 Sum_probs=134.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|| +++.||++++|+++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++++
T Consensus 7 ~~LY--~~~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~YL~~~~p~ 84 (265)
T 4g10_A 7 LTIY--HIPGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRYLEQRYPE 84 (265)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHHHHHHSCS
T ss_pred eEEE--ecCCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHHHhhcCcc
Confidence 7999 999999999999999999999987543 9999999889999999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHH
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAI 157 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l 157 (758)
.|+|.++.+++++++|+.+....+.. ..+...+..|+++|++++||+|+++|+|||++
T Consensus 85 ~~L~P~d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~l~~~~~l~Gd~~t~ADi~l 164 (265)
T 4g10_A 85 PAVAHPDPFCHAVEGMLAELAGPFSGAGYRMILNREIGKREEMRAAVDAEFGKVDAFLKRYATGSDFLFDDRFGWAEVAF 164 (265)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHCCSSSSSSTTCCCHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchhHHHHHHHHHhhhhhHHHHHHHhccCccccCCCCeeeHHHH
Confidence 79999999999999999876654321 44556667778888889999999999999999
Q ss_pred HHHHhhhhc--ccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQ--RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~--~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.+.++.. ...+....+.||+|.+|+++|.++ |+||++..+
T Consensus 165 ~p~l~~l~~l~~~~~~~~~~~~P~l~~w~~r~~~r--Pa~q~t~~e 208 (265)
T 4g10_A 165 TPMFKRLWFLDYYEDYEVPANFDRVLRWRAACTAH--PAAQYRSKE 208 (265)
T ss_dssp HHHHHHTHHHHHHSCCCCCTTCHHHHHHHHHHHHS--GGGCSSCHH
T ss_pred HHHHHHHHHHhhhcCCCccccCHHHHHHHHHHHcC--HHHHhhCcH
Confidence 998887522 122333457899999999999999 999876543
|
| >3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-24 Score=216.32 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=139.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
|+|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++|+ .|+||.+|++||++.+
T Consensus 1 M~~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~~~~~-~l~eS~aI~~yL~~~~~~~ 77 (229)
T 3lxz_A 1 MSLKLY--GFSVSNYYNMVKLALLEKGLTFEEVTFYGGQAPQALEVSPRGKVPVLETEHG-FLSETSVILDYIEQTQGGK 77 (229)
T ss_dssp -CEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCCCSCHHHHTTSTTSCSCEEEETTE-EEESHHHHHHHHHHHCCSS
T ss_pred CeEEEE--eCCCCchHHHHHHHHHHcCCCCEEEecCCCCCHHHHhhCCCCCcCeEEeCCc-eeecHHHHHHHHHhcCCCC
Confidence 779999 999999999999999999999998653 99999999554 5999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDI 155 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi 155 (758)
.|+|.++.+++++++|+.++.+.+. .+.+...|+.||++|++++||+|+++|+||+
T Consensus 78 ~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 157 (229)
T 3lxz_A 78 ALLPADPFGQAKVRELLKEIELYIELPARTCYAESFFGMSVEPLIKEKARADLLAGFATLKRNGRFAPYVAGEQLTLADL 157 (229)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHTHHHHHTTHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHH
Confidence 7999999999999999998776433 1567788999999999999999999999999
Q ss_pred HHHHHHhhhhc---ccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 156 AIWSALAGTGQ---RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 156 ~l~~~L~~l~~---~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
++++.+.++.. ...+......||+|.+|+++|.++ |++++++++.
T Consensus 158 ~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 205 (229)
T 3lxz_A 158 MFCFSVDLANAVGKKVLNIDFLADFPQAKALLQLMGEN--PHMPRILADK 205 (229)
T ss_dssp HHHHHHHHHHHHHHHHTSCCGGGGCHHHHHHHHHHHTC--TTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCcchhhhChHHHHHHHHHHhC--hhHHHHHhhH
Confidence 99999988632 123344457899999999999999 9999998874
|
| >3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=216.05 Aligned_cols=159 Identities=12% Similarity=0.112 Sum_probs=135.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++++
T Consensus 1 M~~~Ly--~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 78 (213)
T 3m0f_A 1 MSLKLI--GMLDSPYVRRVAISLKSLGLPFEHHSLSVFSTFEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYLETLAGP 78 (213)
T ss_dssp --CEEE--SCTTSHHHHHHHHHHHHHTCCCEEECCCTTTTHHHHHHHCTTCCSSEEECTTCCEEESHHHHHHHHHHHHCG
T ss_pred CeEEEe--cCCCCCcHHHHHHHHHHCCCCcEEEEecCCCCcHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHHHHHhcCC
Confidence 778999 999999999999999999999998653 9999999779999999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC-------------------------hHHHHHHHHHHHHhcccCC-cccCCCCC
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS-------------------------GSEFENACTYVDKYLERRT-FVVGHSLS 151 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~-------------------------~~~l~~~L~~Le~~L~~~~-flvG~~lT 151 (758)
.|+|.++.+++++++|+.|+.+.+. .+.+...|+.||++|++++ ||+| ++|
T Consensus 79 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G-~~t 157 (213)
T 3m0f_A 79 QRSLMPTALPQRLRELRLVGLALAACEKSVQIVYERNLRPAEKQHGPWLERVGGQLQAAYGELEQELQKQPLPRDG-SLG 157 (213)
T ss_dssp GGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSS-CCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCC
Confidence 4999999999999999988654322 1457788999999999887 9999 999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+|||++++.+.++............||+|.+|+++|.++ |+|++++.
T Consensus 158 ~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~ 204 (213)
T 3m0f_A 158 QAGISLAVAWSFSQMMVADQFNPGQFPAVRGFAEYAEQL--PVFLATPA 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCTTSSHHHHHHHHHHTTS--HHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHccccCCcccCcHHHHHHHHHhcC--hHHHHhcc
Confidence 999999999998743322222357899999999999999 99887643
|
| >3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-24 Score=215.54 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=134.4
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++
T Consensus 1 M~~~~Ly--~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~ 78 (225)
T 3m8n_A 1 MSLYKLY--SMQRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLAV 78 (225)
T ss_dssp -CCEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHHT
T ss_pred CCceEEe--cCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHHc
Confidence 44 7999 888999999999999999999997543 99999998789999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccccCCh---------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPVFSSG---------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~~l~~---------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
...|+|.++.+++++++|+.|....+.+ +.+...|+.||++|++++||+|+++
T Consensus 79 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 158 (225)
T 3m8n_A 79 GTSLAPDTRMDRAEALQWMFFEQHALEPNIGSAYFWLCLVKGGRDLQTHALEDWLERGYAALQVMENHLKTNDYFAAGQL 158 (225)
T ss_dssp TSTTSCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHTSTTCTGGGTTTHHHHHHHHHHHHHHHHHHTTSCSSSBTTBC
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence 8789999999999999999876654331 3556789999999999999999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
|+|||++++.+.++.. .+.. ...||+|.+|+++|.++ |+++++
T Consensus 159 T~ADi~l~~~l~~~~~--~~~~-~~~~p~l~~w~~r~~~~--p~~~~~ 201 (225)
T 3m8n_A 159 TIADIALYGYTHVADQ--CDFD-LSTFPAVNAWLRRVEQT--PGFITM 201 (225)
T ss_dssp CHHHHHHHHHHTTGGG--TTCC-CTTCHHHHHHHHHHHTS--TTCCCT
T ss_pred cHHHHHHHHHHHHHHH--cCCC-hhhChHHHHHHHHHHcC--hhhhhh
Confidence 9999999999998632 2332 57899999999999999 988776
|
| >4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=215.62 Aligned_cols=155 Identities=15% Similarity=0.259 Sum_probs=135.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 24 ~~Ly--~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 100 (229)
T 4iel_A 24 LHIL--GKIPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIKD-DGFVLWESNTIIRYLANRYG 100 (229)
T ss_dssp EEEE--SCTTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEEE-TTEEEECHHHHHHHHHHHHC
T ss_pred EEEe--cCCCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEEE-CCEEEEeHHHHHHHHHHhcC
Confidence 7999 899999999999999999999997542 99999998 8999999999999999999
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccC-CcccCCCC
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERR-TFVVGHSL 150 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~-~flvG~~l 150 (758)
.|+|.++.+++++++|+.|+...+.+ +.+...|+.||++|+.+ +||+|+++
T Consensus 101 ~~~L~p~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~g~fl~G~~~ 180 (229)
T 4iel_A 101 GDALYPAEPQARARVDQWIDWQGSDLNRSWVGAFLGLVRKSPEHQDPAAIAQSIAGWTKHMQVLNAQLEATGAFVAGDHF 180 (229)
T ss_dssp CTTTSCCSHHHHHHHHHHHHHHHHTHHHHTHHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCcCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEecCCCC
Confidence 49999999999999999986554321 46778899999999987 99999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+|||++++.+.++... +.. ...||+|.+|+++|.++ |++++++++
T Consensus 181 t~ADi~l~~~l~~~~~~--~~~-~~~~p~l~~w~~~~~~~--p~~~~~l~~ 226 (229)
T 4iel_A 181 TLADIPIGLSVNRWFGT--PFE-HPDFPAAKRYIERLATR--EGFKQYAGS 226 (229)
T ss_dssp CTTHHHHHHHHHHHHTS--CSC-CCCCHHHHHHHHHHTTS--HHHHHHCST
T ss_pred CHHHHHHHHHHHHHHcC--CCC-cccChhHHHHHHHHHcC--HHHHHHHhc
Confidence 99999999999876322 333 57899999999999999 999998654
|
| >3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=212.72 Aligned_cols=158 Identities=18% Similarity=0.338 Sum_probs=136.6
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|+|| +++. +++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++
T Consensus 1 M~~~Ly--~~~~-s~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~YL~~ 77 (227)
T 3uar_A 1 MVMKLY--YFPG-ACSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYLAD 77 (227)
T ss_dssp -CEEEE--ECTT-STTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHHHHH
T ss_pred CeEEEe--cCCC-cchHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHHHHH
Confidence 678998 6665 4799999999999999997432 89999998889999999999999999
Q ss_pred hC---CCCC-CCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcc-cCCcccCCCCCHh
Q 043341 98 VG---NFYG-QNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLE-RRTFVVGHSLSIV 153 (758)
Q Consensus 98 ~~---~L~p-~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~-~~~flvG~~lTlA 153 (758)
++ .|+| .++.+++++++|+.++.+.+.+ +.+...|+.||++|+ +++||+|+++|+|
T Consensus 78 ~~~~~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~fl~G~~~t~A 157 (227)
T 3uar_A 78 LKPESGLMPPSGTFERYRLLEWLAFISTEIHKTFGPFWNPESPEASKQIALGLLSRRLDYVEDRLEAGGPWLMGDRYSVA 157 (227)
T ss_dssp HCGGGCSSCCTTCSHHHHHHHHHHHHHHHTTGGGTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSBTTBSSCCHH
T ss_pred hCCCCCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHccCCCccCCCCCCHH
Confidence 98 7999 7889999999999988654432 467888999999999 9999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
||++++.+.++... +.. ...+|+|.+|+++|.++ |++++++++-
T Consensus 158 Di~l~~~l~~~~~~--~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (227)
T 3uar_A 158 DAYLSTVLGWCEYL--KID-LSKWPRILAYLERNQAR--PAVQAAMKAE 201 (227)
T ss_dssp HHHHHHHHTHHHHT--TCC-CTTCHHHHHHHHHHHTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCC-cccChHHHHHHHHHHcC--HHHHHHHHHc
Confidence 99999999986332 333 47899999999999999 9999998874
|
| >3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=210.42 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=134.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeC----CC--cEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFS----NG--SKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~----~g--~~l~ES~aIl~y 94 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |+||+|+++ +| .+|+||.||++|
T Consensus 2 ~~Ly--~~~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI~~y 78 (215)
T 3gx0_A 2 IDLY--FAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_dssp EEEE--ECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHHHHH
T ss_pred eEEE--eCC-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHHHHH
Confidence 7898 665 99999999999999999998643 899999997 46 899999999999
Q ss_pred HHHhC-CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 95 IGRVG-NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 95 L~~~~-~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
|++++ .|+|.++.+++++++|+.|+.+.+.+ ..+...|+.||++|++++||+|++
T Consensus 79 L~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 158 (215)
T 3gx0_A 79 LAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGEN 158 (215)
T ss_dssp HHHHHSCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSS
T ss_pred HHHHccccCCCCHHHHHHHHHHHHHHhhccccchhhHhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHccCCcccCCC
Confidence 99999 69999999999999999887654331 356778999999999999999999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+|+||+++++.+.++.. .+.. ...||+|.+|+++|.++ |++++++++-
T Consensus 159 ~t~ADi~~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 206 (215)
T 3gx0_A 159 YSIADIACWPWVNAWTR--QRID-LAMYPAVKNWHERIRSR--PATGQALLKA 206 (215)
T ss_dssp CCHHHHHHHHHHTTGGG--GTCC-GGGSHHHHHHHHHHHTS--HHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHh--cCCC-cccCchHHHHHHHHHcC--HHHHHHHhhh
Confidence 99999999999998622 2333 67899999999999999 9999997653
|
| >3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=211.67 Aligned_cols=159 Identities=13% Similarity=0.179 Sum_probs=137.6
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++
T Consensus 1 M~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d-~~~~l~eS~aI~~yL~~ 77 (218)
T 3iso_A 1 MAPVLG--YWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKD-GNFSLTQSLAILRYIAD 77 (218)
T ss_dssp CCCEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEE-TTEEEESHHHHHHHHHH
T ss_pred CCcEEE--EeCCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEE-CCEEEecHHHHHHHHHH
Confidence 678998 899999999999999999999997532 88999975 88999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
+++|+|.++.+++++++|+.++..... .+.+...|+.||++|++++|++|+++|+|||++++
T Consensus 78 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 157 (218)
T 3iso_A 78 KHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYE 157 (218)
T ss_dssp HTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhHHHHHHHHHHHccCCcccCCCCCHHHHHHHH
Confidence 999999999999999999877543211 14677889999999999999999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.+.++... +......||+|.+|+++|.++ |+|++++++-
T Consensus 158 ~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 196 (218)
T 3iso_A 158 ALDVIRYL--DPTSVEAFPNLMQFIHRIEAL--PNIKAFMESD 196 (218)
T ss_dssp HHHHHHHH--CHHHHHTCHHHHHHHHHHHHS--HHHHHHHTST
T ss_pred HHHHHHHh--ChhhhhhCchHHHHHHHHHhC--hHHHHHHcCC
Confidence 99986322 222357899999999999999 9999998763
|
| >3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=212.45 Aligned_cols=158 Identities=20% Similarity=0.313 Sum_probs=135.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCC--Ceeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGI--TIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl--~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++.|+++++++++|+++|+ +|+.+.+ |+||+|+++||.+|+||.||++||+++
T Consensus 19 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~ 96 (233)
T 3ibh_A 19 MIIY--DTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITEYIDAL 96 (233)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHHHHHHH
T ss_pred eEEe--cCCCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHHHHHHh
Confidence 7899 88889999999999999999 9987543 999999966999999999999999999
Q ss_pred C---CCCCCCHHHHHHHHHHHHhccccCC------------------------------hHHHHHHHHHHHHhcccCCcc
Q 043341 99 G---NFYGQNAYEAGEIDEWLDYTPVFSS------------------------------GSEFENACTYVDKYLERRTFV 145 (758)
Q Consensus 99 ~---~L~p~~~~era~v~~wl~~~~~~l~------------------------------~~~l~~~L~~Le~~L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.|+...+. .+.+...|+.||++|++++||
T Consensus 97 ~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl 176 (233)
T 3ibh_A 97 DGTPTLTGKTPLEKGVIHMMNKRAELELLDPVSVYFHHATPGLGPEVELYQNKEWGLRQRDKALHGMHYFDTVLRERPYV 176 (233)
T ss_dssp TSCCSSSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSCTTCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTTCSBT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 9 4999999999999999987643221 145778899999999999999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+|+++|+||+++++.+.++.. .+......||+|.+|+++|.++ |++++++++.
T Consensus 177 ~G~~~t~ADi~l~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 229 (233)
T 3ibh_A 177 AGDSFSMADITVIAGLIFAAI--VKLQVPEECEALRAWYKRMQQR--PSVKKLLEIR 229 (233)
T ss_dssp TBSSCCHHHHHHHHHHHHHHH--TTCCCCTTCHHHHHHHHHHHHS--HHHHHHC---
T ss_pred cCCCCCHHHHHHHHHHHHHHH--hCCCchhhChhHHHHHHHHHhC--HHHHHHHhhC
Confidence 999999999999999988632 2333347899999999999999 9999997653
|
| >3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=210.39 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=136.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++ .
T Consensus 9 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~~ 85 (215)
T 3lyp_A 9 LACY--SDPADHYSHRVRIVLAEKGVSAEIISVEAGRQPPKLIEVNPYGSLPTLVD-RDLALWESTVVMEYLDERYPHPP 85 (215)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECC---CCHHHHHHCTTCCSSEEEC-C-CEEESHHHHHHHHHHHSCSSC
T ss_pred eEEE--eCCCCchHHHHHHHHHHCCCCcEEEecCcccccHHHHHHCCCCCcCeEEE-CCEEeecHHHHHHHHHHhCCCCC
Confidence 6899 888899999999999999999998653 99999985 8999999999999999999 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|++++||+|+++|+|||++++.+
T Consensus 86 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l 165 (215)
T 3lyp_A 86 LLPVYPVARANSRLLIHRIQRDWCGQVDLILDPRTKEAARVQARKELRESLTGVSPLFADKPFFLSEEQSLVDCCLLPIL 165 (215)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHGGGGGTSSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCCHHHHHHHHHH
Confidence 9999999999999999987764431 467788999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.++... +......||+|.+|+++|.++ |++++++++-
T Consensus 166 ~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 202 (215)
T 3lyp_A 166 WRLPVL--GIELPRQAKPLLDYMERQFAR--EAFQASLSGV 202 (215)
T ss_dssp HTTTTT--TCCCCGGGHHHHHHHHHHHHS--HHHHHHCCHH
T ss_pred HHHHHh--CCCccccChHHHHHHHHHHcC--HHHHHhcccH
Confidence 986332 333237899999999999999 9999987664
|
| >3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=209.24 Aligned_cols=156 Identities=15% Similarity=0.263 Sum_probs=133.8
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++
T Consensus 1 M~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~~ 78 (210)
T 3m3m_A 1 MSLYKVY--GDYRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLAD 78 (210)
T ss_dssp -CCEEEE--ECTTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHHT
T ss_pred CCeEEEe--CCCCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHhc
Confidence 44 7999 888999999999999999999997543 99999997799999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCC
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLS 151 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lT 151 (758)
...|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|+++|
T Consensus 79 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 158 (210)
T 3m3m_A 79 GSQFLPSEPRLRTQVLQWQFFEQYSHEPYIAVARFIQLYEGLPEERREEYLKLHKRGYKALDVMEKQLSRTPYLVGEHYS 158 (210)
T ss_dssp TSTTSCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTSCC
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 6689999999999999999877654321 34567899999999999999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+||+++++.+.++.. .+.. ...+|+|.+|+++|.++ |+|+++.
T Consensus 159 ~ADi~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~ 201 (210)
T 3m3m_A 159 IADIALYAYTHVADE--GGFD-LSRYPGIQAWMQRVQSH--PRHVPML 201 (210)
T ss_dssp HHHHHHHHHHTTGGG--GTCC-GGGCHHHHHHHHHHHTS--TTCCCSC
T ss_pred HHHHHHHHHHHHhhh--cCCC-hhhChHHHHHHHHHHcC--cchhhhh
Confidence 999999999998632 2222 57899999999999999 9886653
|
| >3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=207.64 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=135.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++ .
T Consensus 1 m~Ly--~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 78 (202)
T 3r2q_A 1 MKLV--GSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPA 78 (202)
T ss_dssp CEEE--ECSSCHHHHHHHHHHHHTTCCCEEEECCTTSSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHHHHHTCCSSC
T ss_pred CEEE--eCCCCcHHHHHHHHHHHcCCCCeEEEecCCCCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHHHHHhCCCCC
Confidence 5898 888999999999999999999998643 9999999669999999999999999999 6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|+|.++.+++++++|+.|+.+.+.+ +.+...|+.||++|++++ ++|+++|+||++
T Consensus 79 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~-l~G~~~t~ADi~ 157 (202)
T 3r2q_A 79 MLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SCTTCCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCCCHHHHH
Confidence 9999999999999999987754331 367888999999999999 999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+++.+.++............||+|.+|+++|.++ |+|++++
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~ 198 (202)
T 3r2q_A 158 IACAVGYLNFRRVAPGWCVDRPHLVKLVENLFSR--ESFARTE 198 (202)
T ss_dssp HHHHHHHHHHHTCCTTTTTTCHHHHHHHHHHHTS--HHHHTTC
T ss_pred HHHHHHHHHHhccccchhhcCcHHHHHHHHHHcC--hHHHhhC
Confidence 9999998743333333457899999999999999 9998764
|
| >3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=206.34 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=136.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 2 ~~Ly--~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 78 (209)
T 3ein_A 2 VDFY--YLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVD-NGFALWESRAIQVYLVEKYG 78 (209)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEEE-TTEEEECHHHHHHHHHHHHC
T ss_pred eEEe--cCCCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHHHHhcC
Confidence 7999 899999999999999999999998543 99999987 8999999999999999998
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHH
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIVDI 155 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi 155 (758)
.|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++|++|+++|+|||
T Consensus 79 ~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 158 (209)
T 3ein_A 79 KTDSLYPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAGDSLTVADI 158 (209)
T ss_dssp SSSTTSCSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTCSSSSSSSCCHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 29999999999999999877654331 567888999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHh-hccchHHHHHHhh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA-EYSDSLDEVTATY 202 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~-~~~p~~~~~l~~~ 202 (758)
++++.+.++.. .+.. ...||+|.+|+++|.+ + |++++.....
T Consensus 159 ~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~~--p~~~~~~~~~ 201 (209)
T 3ein_A 159 ALVATVSTFEV--AKFE-ISKYANVNRWYENAKKVT--PGWEENWAGC 201 (209)
T ss_dssp HHHHHHHHHHH--TTCC-GGGSHHHHHHHHHHHHHS--TTHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCC-hhhCHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 99999998632 2333 6789999999999999 9 9999965443
|
| >3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=210.13 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=137.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++ .
T Consensus 7 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~~ 83 (216)
T 3lyk_A 7 MTLF--SNKDDIYCHQVKIVLAEKGVLYENAEVDLQALPEDLMELNPYGTVPTLVD-RDLVLFNSRIIMEYLDERFPHPP 83 (216)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHSCSSC
T ss_pred EEEE--eCCCChhHHHHHHHHHHcCCCcEEEeCCcccCcHHHHhhCCCCCcCeEEE-CCeEecCHHHHHHHHHHhCCCCC
Confidence 7999 888899999999999999999998653 99999996 8999999999999999998 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|++++||+|+++|+||+++++.+.+
T Consensus 84 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~ 163 (216)
T 3lyk_A 84 LMQVYPVSRAKDRLLMLRIEQDWYPTLAKAENGTEKEKTSALKQLKEELLGIAPIFQQMPYFMNEEFGLVDCYVAPLLWK 163 (216)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHSSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988765442 46788899999999999999999999999999999998
Q ss_pred hhccccccccc-ccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 164 TGQRWDSLRKS-KKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 164 l~~~~~~~~~~-~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+... +.... ..||+|.+|+++|.++ |+|++++.+
T Consensus 164 ~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 198 (216)
T 3lyk_A 164 LKHL--GVEFTGTGSKAIKAYMERVFTR--DSFLQSVGE 198 (216)
T ss_dssp HHTT--TCCCCSTTHHHHHHHHHHHHTS--HHHHHHTC-
T ss_pred HHHc--CCCCccccCHHHHHHHHHHhcC--HHHHHhcCc
Confidence 6332 22222 5899999999999999 999998765
|
| >1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=206.37 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=136.8
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|
T Consensus 1 M~~~~Ly--~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l 77 (206)
T 1tw9_A 1 MVHYKLT--YFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEV-DGQQLAQSQAICRYLAKTFGF 77 (206)
T ss_dssp CCCEEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECHHHHGGGGGGSTTSCSCEEEE-TTEEEECHHHHHHHHHHHHTC
T ss_pred CCceEEE--EcCCCccHHHHHHHHHHcCCCceEEEeCHHHHHHHcccCCCCCCCEEEE-CCEEEecHHHHHHHHHHHcCC
Confidence 44 7999 888899999999999999999997542 99999997 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccC------------------C---hHHH----HHHHHHHHHhcccC--CcccCCCCCHhH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFS------------------S---GSEF----ENACTYVDKYLERR--TFVVGHSLSIVD 154 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l------------------~---~~~l----~~~L~~Le~~L~~~--~flvG~~lTlAD 154 (758)
+|.++.+++++++|+.++.... . .+.+ ...|+.||++|+++ +|++|+++|+||
T Consensus 78 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~AD 157 (206)
T 1tw9_A 78 AGATPFESALIDSLADAYTDYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVD 157 (206)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSSSTTSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHhhhccccchHHHHHHHHHHHhCCCCeEECCCCcHHH
Confidence 9999999999999998765310 0 1335 78899999999988 999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++++.+.++.. .+......+|+|.+|+++|.++ |++++++++-
T Consensus 158 i~~~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (206)
T 1tw9_A 158 LLVAEHVADMTN--RVPEYIEGFPEVKAHMERIQQT--PRIKKWIETR 201 (206)
T ss_dssp HHHHHHHHHHHH--HCGGGGTTCHHHHHHHHHHHTS--HHHHHHHHHS
T ss_pred HHHHHHHHHHHH--hCcchhhcCchHHHHHHHHHcC--HHHHHHHHcC
Confidence 999999998633 2223467899999999999999 9999998753
|
| >3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=209.02 Aligned_cols=160 Identities=9% Similarity=0.175 Sum_probs=138.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeee-------------------c----------CCccEEEeCCCcEEec
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTET-------------------S----------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~-------------------~----------g~vP~L~~~~g~~l~E 87 (758)
|+|+|| +++.| ++++++++|+++|++|+.+. . |+||+|++ ||.+|+|
T Consensus 1 M~~~Ly--~~~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~e 76 (225)
T 3lsz_A 1 MSLKIY--GVYRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEE-EGLILTE 76 (225)
T ss_dssp -CCEEE--SCSSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEE-TTEEEES
T ss_pred CeEEEE--eCCCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEE-CCEEEEc
Confidence 558999 88888 99999999999999988631 1 89999976 8999999
Q ss_pred hHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhccccCCh---------------------------HHHHHHHHHHHHh
Q 043341 88 TYVLLRYIGRVG--NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------------SEFENACTYVDKY 138 (758)
Q Consensus 88 S~aIl~yL~~~~--~L~p~~~~era~v~~wl~~~~~~l~~---------------------------~~l~~~L~~Le~~ 138 (758)
|.||++||++++ .|+|.++.+++++++|+.|+.+.+.+ +.+...|+.||++
T Consensus 77 S~aI~~yL~~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (225)
T 3lsz_A 77 SLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERH 156 (225)
T ss_dssp HHHHHHHHHHHHCGGGSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 49999999999999999987665431 3566788999999
Q ss_pred cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhhcc
Q 043341 139 LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSN 205 (758)
Q Consensus 139 L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~~ 205 (758)
|++++||+|+++|+|||++++.+.++.. .+. ....||+|.+|+++|.++ |+|++++++....
T Consensus 157 L~~~~~l~G~~~t~ADi~l~~~l~~~~~--~~~-~~~~~p~l~~w~~~~~~~--p~~~~~~~~~~~~ 218 (225)
T 3lsz_A 157 FAAEDYLVGGRFTVADLNLAETLRYGQA--HPA-LLEPFPAVAAWLDRCQSR--PAFRLMMERRAAE 218 (225)
T ss_dssp TTTCSSSSTTSCCHHHHHHHHHHHTTTT--STT-TTTTCHHHHHHHHHHHTS--HHHHHHHHHHHHC
T ss_pred hccCCcccCCCCCHHHHHHHHHHHHHHH--cCC-CcccChHHHHHHHHHHcC--HHHHHHHhhcccc
Confidence 9999999999999999999999998733 222 367899999999999999 9999999887544
|
| >3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-23 Score=211.67 Aligned_cols=162 Identities=9% Similarity=0.152 Sum_probs=138.5
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+ |+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|+++|+ .|+||.+|++||++++
T Consensus 1 M~~~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~nP~g~vPvL~~~~~-~l~eS~aI~~YL~~~~~~ 77 (242)
T 3ubk_A 1 MVMIKLH--GASISNYVNKVKLGILEKGLEYEQIRIAPSQEEDFLKISPMGKIPVLEMDGK-FIFESGAILEFLDTIFPQ 77 (242)
T ss_dssp -CCEEEE--SCTTCHHHHHHHHHHHHHTCCEEEECCCCCCCHHHHTTSTTCCSCEEEETTE-EECCHHHHHHHHHHHCCC
T ss_pred CCeEEEE--eCCCChHHHHHHHHHHHcCCCcEEEecCCccCHHHHhcCCCCCcCeEEECCc-eEecHHHHHHHHHHhCCC
Confidence 44 6999 899999999999999999999998653 99999999554 5999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC---------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS---------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~---------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.|+|.++.+++++++|+.++.+.+. .+.+...|+.||++|++++||+|+++|+|||+
T Consensus 78 ~~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~T~ADi~ 157 (242)
T 3ubk_A 78 TPKLIPEDPWEAARVREISTIIETYLDIPARRIYLPAAKVSPEIVEEVHSTLVKGIKALQRVVRFSPYIAGNVFTLADCS 157 (242)
T ss_dssp SSCSSCSSHHHHHHHHHHHHHHHHTTHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHHH
Confidence 5999999999999999998776543 14567789999999999999999999999999
Q ss_pred HHHHHhhhhc---cccccccccc-ChhHHHHHHHHHhhccchHHHHHHhhh
Q 043341 157 IWSALAGTGQ---RWDSLRKSKK-YQNLVRWFNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 157 l~~~L~~l~~---~~~~~~~~~~-~P~L~rW~~~i~~~~~p~~~~~l~~~~ 203 (758)
+++.+.++.. ...+...... +|+|.+|+++|.++ |++++++++-.
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~r~~~~--p~~~~~~~~~~ 206 (242)
T 3ubk_A 158 GFAHLSVLDEELRPFYPNNHPLDLLNGWKEYFVFMKTK--AGPALVEKDKQ 206 (242)
T ss_dssp HHHHHHHHHHHHTTTCTTTCGGGGSTTHHHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCcccchhhCHHHHHHHHHHHhC--HHHHHHhhhHh
Confidence 9999988632 1233334567 99999999999999 99999988753
|
| >3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=210.70 Aligned_cols=158 Identities=9% Similarity=0.141 Sum_probs=133.9
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+
T Consensus 1 M~~~Ly--~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~ 77 (222)
T 3niv_A 1 MSLILY--DYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDI-NGQILSQSMAIIDYLE 77 (222)
T ss_dssp ---CEE--ECTTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEE-TTEEEECHHHHHHHHH
T ss_pred CeEEEE--cCCCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEE-CCEEeecHHHHHHHHH
Confidence 678999 889999999999999999999986421 89999995 9999999999999999
Q ss_pred HhC---CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhccc----CC
Q 043341 97 RVG---NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLER----RT 143 (758)
Q Consensus 97 ~~~---~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~----~~ 143 (758)
+++ .|+|.++.+++++++|+.++.+.+.+ ..+...|+.||++|+. ++
T Consensus 78 ~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~ 157 (222)
T 3niv_A 78 EIHPEMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKP 157 (222)
T ss_dssp HHCCSSCSSCSSHHHHHHHHHHHHHHHHHTHHHHSHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSS
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 998 79999999999999999887654321 2367889999999987 79
Q ss_pred cccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 144 FVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 144 flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
||+|+++|+|||++++.+.++... +.. ...||+|.+|+++|.++ |+|++++..-
T Consensus 158 ~l~G~~~t~ADi~l~~~l~~~~~~--~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 211 (222)
T 3niv_A 158 VCFGSEVGLADVCLIPQVYNAHRF--HFD-MASYPIINEINEYCLTL--PAFHDAAPEA 211 (222)
T ss_dssp SSSBTSCCHHHHHHHHHHHHHHHT--TCC-CTTCHHHHHHHHHHTTS--HHHHTTSHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHc--CCC-cccCccHHHHHHHHHcC--hHHHHhCcCC
Confidence 999999999999999999987322 333 57899999999999999 9999987764
|
| >2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=205.47 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=136.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCCCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQ 104 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~p~ 104 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|+|.
T Consensus 4 ~~Ly--~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l~p~ 80 (206)
T 2on7_A 4 YKLT--YFAIRGAGECARQIFALADQEFEDVRLDKEQFAKVKPDLPFGQVPVLEV-DGKQLAQSLAICRYLARQFGFAGK 80 (206)
T ss_dssp EEEE--EESSSTTTHHHHHHHHHHTCCCEEEEECHHHHHHHGGGSSSSCSCEEEE-TTEEEECHHHHHHHHHHHHTCSCS
T ss_pred eEEE--EcCCCcchHHHHHHHHHcCCCeeEEEecHHHHHHhCcCCCCCCCCEEEE-CCEEEeeHHHHHHHHHHHhCCCCC
Confidence 7999 888999999999999999999998643 99999997 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccCC---------------------hHH----HHHHHHHHHHhcccC--CcccCCCCCHhHHHH
Q 043341 105 NAYEAGEIDEWLDYTPVFSS---------------------GSE----FENACTYVDKYLERR--TFVVGHSLSIVDIAI 157 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~---------------------~~~----l~~~L~~Le~~L~~~--~flvG~~lTlADi~l 157 (758)
++.+++++++|+.++.+... .+. +...|+.||++|+.+ +|++|+++|+||+++
T Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l 160 (206)
T 2on7_A 81 STFDEAVVDSLADQYSDYRVEIKSFFYTVIGMREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLV 160 (206)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCHHHHHHHTHHHHHHHHHHHHHHHHHTCTTSSSSTTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhccchhhHHHHHHHHHHHHHhCCCCEEecCCccHHHHHH
Confidence 99999999999987653110 023 788899999999988 999999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
++.+.++.. .+......+|+|.+|+++|.++ |++++++.+-
T Consensus 161 ~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (206)
T 2on7_A 161 SEHNATMLT--FVPEFLEGYPEVKEHMEKIRAI--PKLKKWIETR 201 (206)
T ss_dssp HHHHHHHHT--TCTTTTTTCHHHHHHHHHHHTS--HHHHHHHHHS
T ss_pred HHHHHHHHH--hCcchhhcCchHHHHHHHHHcC--hhHHHHHHhC
Confidence 999998633 2223457899999999999999 9999998754
|
| >1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=209.19 Aligned_cols=161 Identities=15% Similarity=0.222 Sum_probs=136.6
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCCCcEEechHHHHHHHHHhC-C-
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-N- 100 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~- 100 (758)
|+ ++|| + ..++++.+++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++ .
T Consensus 1 M~~~~Ly--~-~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (219)
T 1nhy_A 1 MSQGTLY--A-NFRIRTWVPRGLVKALKLDVKVVTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVKLSQDD 77 (219)
T ss_dssp CTTCEEE--C-CSSHHHHHHHHHHHHHTCCCEEECGGGCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHHHHCCCH
T ss_pred CCceEEe--c-CCCCChHHHHHHHHHcCCCceeecccCCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHHHHHhCCCc
Confidence 55 7898 5 6799999999999999999998543 9999999878999999999999999998 3
Q ss_pred -----CCCCC--HHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 101 -----FYGQN--AYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 101 -----L~p~~--~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
|+|.+ +.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|++
T Consensus 78 ~~~~~L~p~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 157 (219)
T 1nhy_A 78 KMKTQLLGADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATEN 157 (219)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHHHHHHTTTTGGGGGTHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSS
T ss_pred ccccccCCCCCchHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCceecCCc
Confidence 89988 99999999999988754431 357788999999999999999999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+|+||+++++.+.++.....+......+|+|.+|+++|.++ |++++++...
T Consensus 158 ~t~ADi~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 208 (219)
T 1nhy_A 158 ISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRAS--PFLKDEYKDF 208 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCHHHHHHCHHHHHHHHHHHHS--TTTGGGCTTC
T ss_pred CCHHHHHHHHHHHHHHhccccchHHHcChHHHHHHHHHHhC--HHHHHHhccc
Confidence 99999999999987632222333357899999999999999 9998887654
|
| >2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=205.80 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=136.8
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|
T Consensus 1 m~~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l 77 (206)
T 2on5_A 1 MVHYKLT--YFAGRGLAEPIRQIFALAGQKYEDVRYTFQEWPKHKDEMPFGQIPVLEE-DGKQLAQSFAIARYLSRKFGF 77 (206)
T ss_dssp CCCEEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTTGGGGGGGSTTSCSCEEEE-TTEEEESHHHHHHHHHHHHTC
T ss_pred CCceEEE--ecCCCcchHHHHHHHHHcCCCceEEEecHHHHHHhccCCCCCCCCEEEE-CCEEEecHHHHHHHHHHHhCC
Confidence 44 7999 888899999999999999999987542 99999997 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC---------------------hHH----HHHHHHHHHHhcccC--CcccCCCCCHhH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS---------------------GSE----FENACTYVDKYLERR--TFVVGHSLSIVD 154 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~---------------------~~~----l~~~L~~Le~~L~~~--~flvG~~lTlAD 154 (758)
+|.++.+++++++|+.++..... .+. +...|+.||++|+++ +|++|+++|+||
T Consensus 78 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~AD 157 (206)
T 2on5_A 78 AGKTPFEEALVDSVADQYKDYINEIRPYLRVVAGVDQGDPEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYAD 157 (206)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHCSSSSSSSSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhccchhhhHHHHHHHHHHHHhCCCCEEeCCcccHHH
Confidence 99999999999999987653110 022 788899999999987 999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++++.+.++.. .+......+|+|.+|+++|.++ |++++++++-
T Consensus 158 i~~~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (206)
T 2on5_A 158 LCLAEHTSGIAA--KFPSIYDGFPEIKAHAEKVRSI--PALKKWIETR 201 (206)
T ss_dssp HHHHHHHHHHHT--TCGGGGTTCHHHHHHHHHHHTS--HHHHHHHHHS
T ss_pred HHHHHHHHHHHh--cCcchhhhChHHHHHHHHHHcC--HHHHHHHHcC
Confidence 999999998633 2233467899999999999999 9999998754
|
| >2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=205.53 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=135.5
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
|+|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++++
T Consensus 2 ~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 78 (210)
T 2a2r_A 2 PPYTVV--YFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQD-GDLTLYQSNTILRHLGRTLG 78 (210)
T ss_dssp CSEEEE--ECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEE-TTEEEECHHHHHHHHHHHTT
T ss_pred CceEEE--EeCCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEEE-CCEEEeeHHHHHHHHHHhcC
Confidence 448999 888899999999999999999987543 99999996 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC-----------------hHHHHHHHHHHHHhcccCC----cccCCCCCHhHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS-----------------GSEFENACTYVDKYLERRT----FVVGHSLSIVDIAIWS 159 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~-----------------~~~l~~~L~~Le~~L~~~~----flvG~~lTlADi~l~~ 159 (758)
|+|.++.+++++++|+.+...... .+.+...|+.||++|+.++ ||+|+++|+||+++++
T Consensus 79 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~g~~~l~G~~~t~ADi~l~~ 158 (210)
T 2a2r_A 79 LYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLD 158 (210)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCSSTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCCCHHHHHHHH
Confidence 999999999999999987632110 1457788999999999887 9999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.++... +......+|+|.+|+++|.++ |++++++.+
T Consensus 159 ~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 196 (210)
T 2a2r_A 159 LLLIHEVL--APGCLDAFPLLSAYVGRLSAR--PKLKAFLAS 196 (210)
T ss_dssp HHHHHHHH--STTGGGGCHHHHHHHHHHHTS--HHHHHHHHS
T ss_pred HHHHHHhh--CcchhhcCcHHHHHHHHHHcC--HHHHHHHhc
Confidence 99986322 222357899999999999999 999999875
|
| >1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-23 Score=205.16 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=133.9
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++
T Consensus 1 M~~~~Ly--~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 77 (208)
T 1yq1_A 1 MPSYKLT--YFFFRGLGEPIRLLFHLAGVQFEEVRMNPDQTWLDIKDSTPMKQLPVLNI-DGFELPQSGAILRYLARKFG 77 (208)
T ss_dssp CCCEEEE--EESSSTTTHHHHHHHHHHTCCCEEEEECTTTCCHHHHHTSTTSCSCEEEE-SSCEECCHHHHHHHHHHHHT
T ss_pred CCceEEE--EeCCCCchHHHHHHHHHcCCCeEEEEecccchhhhhhccCCCCCCCEEEE-CCEEEeeHHHHHHHHHHhcC
Confidence 44 7999 888899999999999999999987432 99999997 88999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC-------------------h---H----HHHHHHHHHHHhcccC--CcccCCCCCH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS-------------------G---S----EFENACTYVDKYLERR--TFVVGHSLSI 152 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~-------------------~---~----~l~~~L~~Le~~L~~~--~flvG~~lTl 152 (758)
|+|.++.+++++++|+.++.+... . + .+.+.|+.||++|+.+ +|++|+++|+
T Consensus 78 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 157 (208)
T 1yq1_A 78 FAGKTPEEEAWVDAVHDLFKDFLAEFKKFAAERRSGKSAEEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITF 157 (208)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSSSCCH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCCCCeeeCCCccH
Confidence 999999999999999987643100 0 1 2333899999999876 6999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 153 ADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
||+++++.+.++.. .+......+|+|.+|+++|.++ |++++++++-
T Consensus 158 ADi~~~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 203 (208)
T 1yq1_A 158 ADLVVVDNLLTLKN--YGLFDESEFTKLAALREKVNSY--PGIKEYIAKR 203 (208)
T ss_dssp HHHHHHHHHHHHHH--TTCCCTTTTHHHHHHHHHHHTS--TTHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--hCcchhhcCchHHHHHHHHHhC--hhHHHHHHcC
Confidence 99999999998633 2223357899999999999999 9999998764
|
| >4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-23 Score=211.01 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=134.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCC-----cEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNG-----SKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g-----~~l~ES~aIl~yL 95 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |+||+|++++| .+|+||.||++||
T Consensus 23 ~~Ly--~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~aI~~yL 99 (244)
T 4ikh_A 23 IQLY--SLP-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYL 99 (244)
T ss_dssp EEEE--ECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHHHHHHHH
T ss_pred eEEE--eCC-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHHHHHHHH
Confidence 7898 776 99999999999999999997543 89999999754 7999999999999
Q ss_pred HHhC-CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCC
Q 043341 96 GRVG-NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGH 148 (758)
Q Consensus 96 ~~~~-~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~ 148 (758)
++++ .|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|+
T Consensus 100 ~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~Gd 179 (244)
T 4ikh_A 100 ADKSGQLLAQESAARYETIQWLMFQMGGIGPMFGQVGFFNKFAGREYEDKRPLERYVNEAKRLLGVLDKHLGGREWIMGE 179 (244)
T ss_dssp HHHHTCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSGGGGCSCCHHHHHHHHHHHHHHHHHHHHHTTCSBTBBT
T ss_pred HhhCCCcCCCCHHHHHHHHHHHHHHHhcchHHHhhhhhhhhccCccccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 9999 69999999999999999877654321 45677899999999999999999
Q ss_pred CCCHhHHHHHHHHhhhhccccc--ccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 149 SLSIVDIAIWSALAGTGQRWDS--LRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 149 ~lTlADi~l~~~L~~l~~~~~~--~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
++|+|||++++.+.++...... ......||+|.+|+++|.++ |+|++++..-
T Consensus 180 ~~t~ADi~l~~~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 233 (244)
T 4ikh_A 180 RYTIADIATFPWIRNLIGFYEAGELVGIDNFPEVKRVLAKFVAR--PAVIRGLEIP 233 (244)
T ss_dssp BCCHHHHHHHHHHHHHHTTTCCTTTTTGGGCHHHHHHHHHHTTS--HHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHhhhcccccCCcccChHHHHHHHHHHcC--HHHHHHhhcc
Confidence 9999999999999986322111 11257899999999999999 9999987653
|
| >4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=209.16 Aligned_cols=160 Identities=24% Similarity=0.364 Sum_probs=133.0
Q ss_pred ceeE-EEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTME-IKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~-L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|. || +.. ++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++
T Consensus 1 Ms~~lLy--~~~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~yL~~ 77 (238)
T 4exj_A 1 MVMAILY--TGP-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLYIAD 77 (238)
T ss_dssp -CCEEEE--ECS-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred CCceeEe--eCC-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHHHHH
Confidence 4433 55 555 99999999999999999998642 99999998788999999999999999
Q ss_pred hC----CC-CC--CCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCccc
Q 043341 98 VG----NF-YG--QNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVV 146 (758)
Q Consensus 98 ~~----~L-~p--~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flv 146 (758)
++ .| +| .++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+
T Consensus 78 ~~~~~~~L~~pl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~ 157 (238)
T 4exj_A 78 TYDKEHKFFYSLKQDPKLYWEQNELLFYQATQFQSQTLTIANANYQNGHIDENIAQYVLSSFEKVFAFMETKLSGRDWFV 157 (238)
T ss_dssp HHCTTCSSCCCTTTCHHHHHHHHHHHHHHHHTTTTTTHHHHHHHCBTTBCCHHHHHHHHHHHHHHHHHHHHHTTTCSSSS
T ss_pred hcCCCCccCCCCCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhccCCeec
Confidence 98 35 65 7899999999999987765543 466788999999999999999
Q ss_pred CCCCCHhHHHHH-HHHhhhhccccc---ccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 147 GHSLSIVDIAIW-SALAGTGQRWDS---LRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 147 G~~lTlADi~l~-~~L~~l~~~~~~---~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+++|+||++++ +.+.++...... ......||+|.+|+++|.++ |++++++++
T Consensus 158 G~~~T~ADi~l~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~ 214 (238)
T 4exj_A 158 GDKFTIVDIAFLVGEHRRRERLHNSPIWIDLKENFPNVEKWFQRAIAF--ENVEEILKE 214 (238)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTSTTCCCHHHHCHHHHHHHHHHHHS--TTHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCccchhhhhcChHHHHHHHHHHcC--hhHHHHHhc
Confidence 999999999999 888876322111 12345899999999999999 999999765
|
| >2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=207.34 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=136.7
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+ |+|| +++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|
T Consensus 25 m~~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~nP~g~vPvL~~-~g~~l~eS~aI~~YL~~~~~L 101 (225)
T 2hnl_A 25 MEKYTLT--YFNGRGRAEVIRLLFALANVSYEDNRITRDEWKYLKPRTPFGHVPMLNV-SGNVLGESHAIELLLGGRFGL 101 (225)
T ss_dssp CCCEEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECHHHHHHHGGGSSSSCSCEEEE-TTEEEECHHHHHHHHHHHTTC
T ss_pred CCCeEEE--EcCCCCchHHHHHHHHHCCCCeeEEEeChhhhHHhccCCCCCCCCEEEE-CCEEEecHHHHHHHHHHHcCC
Confidence 55 7899 888899999999999999999998543 99999997 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCCh-----------------------HHHHHHHHHHHHhcccC--CcccCCCCCHhHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSSG-----------------------SEFENACTYVDKYLERR--TFVVGHSLSIVDIA 156 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~~-----------------------~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~ 156 (758)
+|.++.+++++++|+.++.. +.+ +.+...|+.||++|+.+ +||+|+++|+||++
T Consensus 102 ~p~~~~~~a~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~ 180 (225)
T 2hnl_A 102 LGTNDWEEAKIMAVVLNIDE-LFQKLIPWTHEKNTTKKAELFRNLSESDVMPFLGRYEKFLKESTTGHIVGNKVSVADLT 180 (225)
T ss_dssp SCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHCCSHHHHHHHHHHHHTTTHHHHHHHHHHHHHTCSSSCSSTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhcccHhhHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCEEeCCcccHHHHH
Confidence 99999999999999998763 211 33677899999999988 99999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++.+.++.. . .....+|+|.+|+++|.++ |++++++++-
T Consensus 181 l~~~l~~~~~--~--~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 220 (225)
T 2hnl_A 181 VFNMLMTLDD--E--VKLEEYPQLASFVNKIGQM--PGIKEWIKKR 220 (225)
T ss_dssp HHHHHHHTGG--G--CCGGGCHHHHHHHHHHHHS--TTHHHHHHHS
T ss_pred HHHHHHHhcc--c--chhhhChHHHHHHHHHHcC--HhHHHHHhcC
Confidence 9999998633 2 2357899999999999999 9999998753
|
| >3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=209.01 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=137.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCC----------cEEechHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNG----------SKLQGTYV 90 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g----------~~l~ES~a 90 (758)
|+|| ++..|+++++|+++|+++|++|+.+.+ |+||+|++++| .+|+||.|
T Consensus 10 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l~eS~a 87 (235)
T 3n5o_A 10 FELY--GYFRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSLA 87 (235)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEECSHHH
T ss_pred eEEE--ecCCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCceeehhHHH
Confidence 7898 888899999999999999999998543 99999999776 99999999
Q ss_pred HHHHHHHhCC-----CCC--CCHHHHHHHHHHHHhccccCCh----------------------HHHHHHHHHHHHhcc-
Q 043341 91 LLRYIGRVGN-----FYG--QNAYEAGEIDEWLDYTPVFSSG----------------------SEFENACTYVDKYLE- 140 (758)
Q Consensus 91 Il~yL~~~~~-----L~p--~~~~era~v~~wl~~~~~~l~~----------------------~~l~~~L~~Le~~L~- 140 (758)
|++||+++++ |+| .++.+++++++|+.|+.+.+.+ +.+...|+.||++|+
T Consensus 88 I~~yL~~~~~~~~~~L~p~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 167 (235)
T 3n5o_A 88 ALEYLEEALPTNARPLLPPISNPVARAHVRTICNIIACDVQPVTNLKIQKKVKALDGDPTVWSRDLATQGFGAVEKLLEL 167 (235)
T ss_dssp HHHHHHHHCTTCSCCSSCCTTCHHHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCchhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999984 999 9999999999999988765542 456788999999999
Q ss_pred -cCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 141 -RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 141 -~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++||+|+++|+|||++++.+.++.. .+.+ ...||+|.+|+++|.++ |+|++++.+-
T Consensus 168 ~~~~fl~G~~~t~ADi~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 225 (235)
T 3n5o_A 168 SAGRFCVGDEITLADVCLVPAVWAAER--VGMD-LARFPITKRVFEEMLKE--EAVQKAHWQK 225 (235)
T ss_dssp HBSSSSSBTSCCHHHHHHHHHHHHHHH--TTCC-GGGSHHHHHHHHHHHTC--HHHHHTCGGG
T ss_pred cCCCcccCCcccHHHHHHHHHHHHHHH--hCCC-cccChHHHHHHHHHHcC--HHHHhhCccc
Confidence 88999999999999999999998732 2333 47899999999999999 9999887653
|
| >1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.75 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=135.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCCC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFY 102 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~ 102 (758)
|+|+|| +++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++++|+
T Consensus 1 ~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~L~ 77 (208)
T 1tu7_A 1 MSYKLT--YFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDFSSIKSQFQFGQLPCLYD-GDQQIVQSGAILRHLARKYNLN 77 (208)
T ss_dssp CCEEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECGGGSTTTGGGSTTSCSCEEEE-TTEEEESHHHHHHHHHHHTTCS
T ss_pred CCcEEE--EcCCCcchHHHHHHHHHcCCCceEEEEcHHHHHHhccCCCCCCCCEEEE-CCEEEEcHHHHHHHHHHHcCCC
Confidence 347999 888899999999999999999987542 99999996 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccCC----------h-------HH-HHHHHHHHHHhcccCC----cccCCCCCHhHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS----------G-------SE-FENACTYVDKYLERRT----FVVGHSLSIVDIAIWSA 160 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~----------~-------~~-l~~~L~~Le~~L~~~~----flvG~~lTlADi~l~~~ 160 (758)
|.++.+++++++|+.+...... . +. +...|+.||++|+.++ ||+|+++|+||+++++.
T Consensus 78 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~g~~~l~G~~~t~ADi~l~~~ 157 (208)
T 1tu7_A 78 GENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEE 157 (208)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHHHHHHHTTTGGGSSBTTBSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCcHHHHHHHHH
Confidence 9999999999999987643111 0 23 7788999999999887 99999999999999999
Q ss_pred HhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 161 LAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 161 L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.++.. .+......+|+|.+|+++|.++ |++++++.+-
T Consensus 158 l~~~~~--~~~~~~~~~p~l~~w~~~i~~~--p~~~~~~~~~ 195 (208)
T 1tu7_A 158 LDVHQI--LDPHCLDKFPLLKVFHQRMKDR--PKLKEYCEKR 195 (208)
T ss_dssp HHHHHH--HCTTTTTTCHHHHHHHHHHHTS--HHHHHHHHHH
T ss_pred HHHHHh--cChhhhhcCcHHHHHHHHHHcC--HHHHHHHhcC
Confidence 998632 2222357899999999999999 9999988763
|
| >1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=213.32 Aligned_cols=160 Identities=10% Similarity=0.103 Sum_probs=136.2
Q ss_pred cce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 36 VMT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 36 ~M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
+|+ |+|| +++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++
T Consensus 46 ~m~~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~e~~~~nP~gkVPvL~~-~g~~l~ES~aI~~YL~~~~~ 122 (249)
T 1m0u_A 46 IKHSYTLF--YFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEV-DGKRVHQSISMARFLAKTVG 122 (249)
T ss_dssp -CCCEEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHGGGSGGGCSCEEEE-TTEEEECHHHHHHHHHHHHT
T ss_pred CCCCeEEE--EcCCcccHHHHHHHHHHcCCCcEEEEeCHHHHHHHhhcCCCCCCCEEEE-CCEEEecHHHHHHHHHHhcC
Confidence 355 7898 888899999999999999999987543 99999997 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC----------------------hHHHHHHHHHHHHhcccC-CcccCCCCCHhHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS----------------------GSEFENACTYVDKYLERR-TFVVGHSLSIVDIAI 157 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~----------------------~~~l~~~L~~Le~~L~~~-~flvG~~lTlADi~l 157 (758)
|+|.++.+++++++|+.+..+... .+.+...|+.||++|+.+ +||+|+++|+||+++
T Consensus 123 L~p~~~~~ra~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~le~~L~~~g~fl~Gd~~T~ADi~l 202 (249)
T 1m0u_A 123 LCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYF 202 (249)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSBTTBCCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEeeCCCCcHHHHHH
Confidence 999999999999999988743110 034677899999999988 999999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.+.++.... +......||+|.+|+++|.++ |++++++++
T Consensus 203 ~~~l~~~~~~~-~~~~~~~~P~L~~w~~ri~~r--p~~~~~~~~ 243 (249)
T 1m0u_A 203 AGITDYMNYMV-KRDLLEPYPALRGVVDAVNAL--EPIKAWIEK 243 (249)
T ss_dssp HHHHHHHHHHH-TSCTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHhhc-CcchhhcCcHHHHHHHHHHcC--HHHHHHHHc
Confidence 99999863311 112257899999999999999 999999875
|
| >2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=202.42 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=135.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCCCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQ 104 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~p~ 104 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|+|.
T Consensus 3 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~L~p~ 79 (198)
T 2cvd_A 3 YKLT--YFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEV-DGLTLHQSLAIARYLTKNTDLAGN 79 (198)
T ss_dssp EEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEEE-TTEEEECHHHHHHHHHTTSTTSCS
T ss_pred cEEE--EcCCCchHHHHHHHHHHcCCCceEEEeCHHHHHHhccCCCCCCCCEEEE-CCEEEecHHHHHHHHHHHcCCCCC
Confidence 7899 888899999999999999999987543 99999996 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccC-------C-------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhh
Q 043341 105 NAYEAGEIDEWLDYTPVFS-------S-------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGT 164 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l-------~-------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l 164 (758)
++.+++++++|+.++.+.. . ...+...|+.||++|++++|++|+++|+||+++++.+.++
T Consensus 80 ~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~~~ 159 (198)
T 2cvd_A 80 TEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTL 159 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTSCTTCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcchHHHHHHHHHHHHHCCCccCCCCcHHHHHHHHHHHHH
Confidence 9999999999998865311 1 0236778999999999999999999999999999999986
Q ss_pred hcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 165 GQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 165 ~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.... ......+|+|.+|+++|.++ |++++++++-
T Consensus 160 ~~~~--~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 193 (198)
T 2cvd_A 160 LVFK--PDLLDNHPRLVTLRKKVQAI--PAVANWIKRR 193 (198)
T ss_dssp HHHC--TTTTTTCHHHHHHHHHHHTS--HHHHHHHHHS
T ss_pred HhhC--cchhhcCcHHHHHHHHHHhC--HHHHHHHhcC
Confidence 3321 12357899999999999999 9999998753
|
| >2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=202.61 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=135.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCCCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQ 104 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~p~ 104 (758)
|+|| +++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|+|.
T Consensus 3 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l~p~ 79 (202)
T 2gsq_A 3 YTLH--YFPLMGRAELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLDI-DGTKMSQSMCIARHLAREFGLDGK 79 (202)
T ss_dssp EEEE--ECSSSGGGHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSGGGSSCEEEE-TTEEECCHHHHHHHHHHHTTCSCS
T ss_pred cEEE--EcCCCchhHHHHHHHHHcCCCeeEEEeCHHHHHhhcccCCCCCCCEEEE-CCEEEecHHHHHHHHHHHhCCCCC
Confidence 7899 888899999999999999999998543 99999997 889999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccCC--------------------hHHHHHHHHHHHHhcccC----CcccCCCCCHhHHHHHHH
Q 043341 105 NAYEAGEIDEWLDYTPVFSS--------------------GSEFENACTYVDKYLERR----TFVVGHSLSIVDIAIWSA 160 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~--------------------~~~l~~~L~~Le~~L~~~----~flvG~~lTlADi~l~~~ 160 (758)
++.+++++++|+.++..... .+.+...|+.||++|+.+ +|++|+++|+||+++++.
T Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~ADi~l~~~ 159 (202)
T 2gsq_A 80 TSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVA 159 (202)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCSSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCeeeCCcCCHHHHHHHHH
Confidence 99999999999987653110 134677899999999988 999999999999999999
Q ss_pred HhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 161 LAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 161 L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.++.. .+......+|+|.+|+++|.++ |++++++++
T Consensus 160 l~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 196 (202)
T 2gsq_A 160 LEVPLK--HTPELLKDCPKIVALRKRVAEC--PKIAAYLKK 196 (202)
T ss_dssp HHHHHH--HCTTTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHh--hCccccccCcHHHHHHHHHHhC--HHHHHHHHc
Confidence 998633 2222357899999999999999 999999875
|
| >3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=206.83 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=135.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
++|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++++|
T Consensus 5 ~~Ly--~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~p~~~~p~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l 81 (222)
T 3ik7_A 5 PKLH--YPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEI-DGMKLVQTRSILHYIADKHNL 81 (222)
T ss_dssp CEEE--ECSSCTTTHHHHHHHHHTTCCCEEEECCSHHHHHHHHHTTCSTTSCSCEEEE-TTEEEESHHHHHHHHHHHTTC
T ss_pred cEEE--EeCCCcchHHHHHHHHHcCCCeeEEeeCcHHHHHHhhhcCCCCCCCCCEEEE-CCEEeehHHHHHHHHHHhCCC
Confidence 7999 888999999999999999999998653 78999997 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC--------h-------------HHHHHHHHHHHHhc--ccCCcccCCCCCHhHHHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS--------G-------------SEFENACTYVDKYL--ERRTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~--------~-------------~~l~~~L~~Le~~L--~~~~flvG~~lTlADi~l~ 158 (758)
+|.++.+++++++|+++...... . +.+...|+.||++| .+++|++|+++|+|||+++
T Consensus 82 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~ 161 (222)
T 3ik7_A 82 FGKNLKERTLIDMYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVILL 161 (222)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSCCSSSSTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHCCCceecCCCCCHHHHHHH
Confidence 99999999999999987543211 0 23566789999999 7889999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+.++... +......||+|.+|+++|.++ |++++++++
T Consensus 162 ~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 200 (222)
T 3ik7_A 162 QTILALEEK--IPNILSAFPFLQEYTVKLSNI--PTIKRFLEP 200 (222)
T ss_dssp HHHHHHHHH--STTTTTTCHHHHHHHHHHHTS--HHHHHHHST
T ss_pred HHHHHHHhh--ChhhhhcChHHHHHHHHHHcC--HHHHHHHcC
Confidence 999987332 223467899999999999999 999999874
|
| >1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=202.60 Aligned_cols=155 Identities=15% Similarity=0.310 Sum_probs=132.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.| ++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~s-~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~ 77 (201)
T 1n2a_A 1 MKLF--YKPGA-CSLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_dssp CEEE--ECTTS-TTHHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHTC
T ss_pred Ceee--cCCCc-chHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHHHHhC
Confidence 5788 77666 699999999999999987421 9999999778999999999999999998
Q ss_pred ---CCCCC-CHHHHHHHHHHHHhccccCC-------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFYGQ-NAYEAGEIDEWLDYTPVFSS-------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~p~-~~~era~v~~wl~~~~~~l~-------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.|+|. ++.+++++++|+.|+.+.+. .+.+...|+.||++|++++||+|+++|+||++
T Consensus 78 ~~~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~ 157 (201)
T 1n2a_A 78 PDRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAY 157 (201)
T ss_dssp GGGCSSCCTTCHHHHHHHHHHHHHHHHTHHHHHHHHCSSSCGGGHHHHHHHHHHHHHHHHHHTTTSSCSSSSSCCHHHHH
T ss_pred CCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhccCceecCCCCCHHHHH
Confidence 69998 88999999999988755432 14577889999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++++
T Consensus 158 l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 197 (201)
T 1n2a_A 158 LFTVLRWAYA--VKLN-LEGLEHIAAFMQRMAER--PEVQDALSA 197 (201)
T ss_dssp HHHHHHHHHH--TTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCC-ccccHHHHHHHHHHHhC--HHHHHHHHH
Confidence 9999987632 2222 47899999999999999 999998765
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-23 Score=236.46 Aligned_cols=270 Identities=14% Similarity=0.102 Sum_probs=184.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+++.-+|+|||+|||||+|++++.+.+|| .+.|..++++.++| ++...+++.+.|.+++++
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999 56999999998888 666777899999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCceeccC-----CchH-HHHHHhcCCCCCcCC--CCCHHHHHHHHHHHhc
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAYVDD-----TPRE-QMQKERMDGIESKCR--NNSIEENMKLWKEMIA 380 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~~~-----~~~e-~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~ 380 (758)
|||.+|..+++|+ |.+.+++++++|+++|++|.+. |... ..-....-...+.|. +.+++. +
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~-- 157 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------I-- 157 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------E--
Confidence 9999998888998 9999999999999999999542 2211 111111000002232 112211 0
Q ss_pred CccCCceeeEEeeecCC---------------CC-----------CCCCCCcEEEEeCCCCCcccCCcccccccccc---
Q 043341 381 GSERGLECCLRGKLDMQ---------------DP-----------NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDF--- 431 (758)
Q Consensus 381 g~~~~~~~~~R~k~~~~---------------~~-----------~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~--- 431 (758)
....+.+|++.- .+ +..++|+++.|.... ..||.+..+.|+|++
T Consensus 158 -----~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 158 -----KEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp -----CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSSEEETTEEEEEECSH
T ss_pred -----ecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCceecCCCCCceEEEe
Confidence 112333333210 00 024689999992110 124443323335653
Q ss_pred -------cccccc---cccCccEEeeCCCCCC-chHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCcc
Q 043341 432 -------ACPFVD---AKEGITHALRSSEYHD-RNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKV 499 (758)
Q Consensus 432 -------a~~vdD---~~~githvirg~d~~~-~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~ 499 (758)
++++.| ....+++.+.|.|++. |......++.++|++.|. +++++++.+.|+|||||+++
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN-------- 302 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN-------- 302 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC--------
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC--------
Confidence 334433 2226677778999874 433434456788988776 66669999999999999973
Q ss_pred CCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 500 DGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 500 ~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
..++.++++. ++++++|.|+++.+...++.+|+++.+....+.
T Consensus 303 -------~i~~~dli~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 303 -------VVDPYEVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp -------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred -------CCCHHHHHHH-CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 4478888886 999999999998789999999999999886544
|
| >1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=203.07 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=135.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++
T Consensus 3 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 79 (209)
T 1axd_A 3 MKLY--GAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQD-GDLYLFESRAICKYAARKNK 79 (209)
T ss_dssp EEEE--SCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEE-TTEEEESHHHHHHHHHHHHC
T ss_pred eEEE--eCCCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEEE-CCEEEecHHHHHHHHHHhcC
Confidence 7999 889999999999999999999987532 99999997 89999999999999999985
Q ss_pred --CCCC-CHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 101 --FYGQ-NAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 101 --L~p~-~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
|+|. ++.+++++++|+.+..+.+.+ +.+...|+.||++|++++|++|++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 159 (209)
T 1axd_A 80 PELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDF 159 (209)
T ss_dssp GGGGTTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeCCCC
Confidence 9998 999999999999887653321 456778999999999999999999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+||+++++.+.++... ........+|+|.+|+++|.++ |++++++++
T Consensus 160 ~t~ADi~l~~~l~~~~~~-~~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~ 208 (209)
T 1axd_A 160 LSLADLNHVSVTLCLFAT-PYASVLDAYPHVKAWWSGLMER--PSVQKVAAL 208 (209)
T ss_dssp CCHHHHTTHHHHHHHTTS-GGGGGGGGCHHHHHHHHHHHHS--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CchhhhccCchHHHHHHHHHhC--HHHHHHhcC
Confidence 999999999999986331 1112357899999999999999 999998764
|
| >1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-23 Score=206.51 Aligned_cols=157 Identities=12% Similarity=0.093 Sum_probs=136.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++.+ .
T Consensus 11 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~~ 87 (213)
T 1yy7_A 11 MTLF--SGPTDIFSHQVRIVLAEKGVSVEIEQVEADNLPQDLIDLNPYRTVPTLVD-RELTLYESRIIMEYLDERFPHPP 87 (213)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCEEEEECCTTSCCHHHHHHCTTCCSSEEEE-TTEEEESHHHHHHHHHHHCCSSC
T ss_pred eEEE--cCCCChhHHHHHHHHHHcCCCCeEEeCCcccCcHHHHHHCCCCCCCEEEE-CCEEEecHHHHHHHHHHhCCCCC
Confidence 7999 888899999999999999999998653 99999996 8899999999999999998 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|+++|+||+++++.+.+
T Consensus 88 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~ 167 (213)
T 1yy7_A 88 LMPVYPVARGSSRLMMHRIEHDWYSLLYKIEQGNAQEAEAARKQLREELLSIAPVFNETPFFMSEEFSLVDCYLAPLLWR 167 (213)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTHHHHCSBTTBSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987754421 45677899999999999999999999999999999988
Q ss_pred hhccccccccc-ccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 164 TGQRWDSLRKS-KKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 164 l~~~~~~~~~~-~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.. .+.... ..+|+|.+|+++|.++ |++++++..-
T Consensus 168 ~~~--~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 203 (213)
T 1yy7_A 168 LPV--LGIEFTGAGSKELKGYMTRVFER--DAFLASLTEA 203 (213)
T ss_dssp GGG--GTCCCCSTTHHHHHHHHHHHHTS--HHHHHHCCHH
T ss_pred HHH--cCCCcccccCHHHHHHHHHHhCC--HHHHHHhhhH
Confidence 632 233322 5799999999999999 9999986553
|
| >3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=208.33 Aligned_cols=158 Identities=14% Similarity=0.194 Sum_probs=136.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++ .
T Consensus 24 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 101 (239)
T 3q18_A 24 IRIY--SMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLDDAYPGRK 101 (239)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCEEEEEBCSSSCCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHHHHHHSCSSC
T ss_pred EEEE--eCCCChHHHHHHHHHHHcCCCcEEEecCcccCCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHHHHHhCCCCC
Confidence 7999 888899999999999999999998643 9999999878999999999999999999 4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccC--CcccCCCCCHhHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERR--TFVVGHSLSIVDIAIWSA 160 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~l~~~ 160 (758)
|+|.++.+++++++|+++...... .+.+...|+.||++|+.+ +||+|+++|+||+++++.
T Consensus 102 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~ADi~l~~~ 181 (239)
T 3q18_A 102 LFPYDPYERARQKMLLELFSKVPHLTKECLVALRSGRESTNLKAALRQEFSNLEEILEYQNTTFFGGTSISMIDYLLWPW 181 (239)
T ss_dssp CSCSSHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTCSBTTBSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHH
Confidence 999999999999999998765321 146788899999999875 999999999999999999
Q ss_pred HhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 161 LAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 161 L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.++...... .....+|+|.+|+++|.++ |++++++.+
T Consensus 182 l~~~~~~~~~-~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 219 (239)
T 3q18_A 182 FERLDVYGIL-DCVSHTPALRLWISAMKWD--PTVSALLMD 219 (239)
T ss_dssp HHTHHHHTCG-GGGTTCHHHHHHHHHHHTS--HHHHHHCCC
T ss_pred HHHHHHcCCc-hhhccCcHHHHHHHHHHhC--hHHHHHcCC
Confidence 9986322111 1257899999999999999 999988654
|
| >2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=202.21 Aligned_cols=155 Identities=15% Similarity=0.304 Sum_probs=132.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.| ++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~s-~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~ 77 (203)
T 2dsa_A 1 MKLY--YSPGA-CSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQV 77 (203)
T ss_dssp CEEE--ECTTS-TTHHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHHC
T ss_pred Ceee--ecCCc-chHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHHHHHhC
Confidence 5788 77666 699999999999999987421 9999999778999999999999999998
Q ss_pred ---CCCCC-CHHHHHHHHHHHHhccccCC-------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFYGQ-NAYEAGEIDEWLDYTPVFSS-------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~p~-~~~era~v~~wl~~~~~~l~-------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.|+|. ++.+++++++|+.|+.+.+. .+.+...|+.||++|++++||+|+++|+||++
T Consensus 78 ~~~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 157 (203)
T 2dsa_A 78 PGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIY 157 (203)
T ss_dssp GGGCSSCCTTSHHHHHHHHHHHHHHHHTHHHHGGGGCTTSCHHHHHHHHHHHHHHHHHHHHHTSSSSBTTBSSCCHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCccHHHHH
Confidence 79998 89999999999988764432 14567889999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++++
T Consensus 158 l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 197 (203)
T 2dsa_A 158 LFVVLGWSAY--VNID-LSPWPSLQAFQGRVGGR--EAVQSALRA 197 (203)
T ss_dssp HHHHHHGGGT--TTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCC-hhhChHHHHHHHHHHcC--HHHHHHHHH
Confidence 9999987632 2222 57899999999999999 999998765
|
| >1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=203.83 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=135.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhCCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~ 102 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|+
T Consensus 4 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l~ 80 (207)
T 1zl9_A 4 YKLT--YFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLEV-DGKKLAQSHAIARFLAREFKLN 80 (207)
T ss_dssp EEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHHHTTCSTTSCSCEEEE-TTEEEECHHHHHHHHHHHTTCS
T ss_pred eEEE--EcCCCchHHHHHHHHHHcCCCceEEEecHHHHHHHhhccCCCCCCCCEEEE-CCEEEeeHHHHHHHHHHHcCCC
Confidence 7999 888899999999999999999987432 89999997 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccCC---------------------hHH----HHHHHHHHHHhcccC--CcccCCCCCHhHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS---------------------GSE----FENACTYVDKYLERR--TFVVGHSLSIVDI 155 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~---------------------~~~----l~~~L~~Le~~L~~~--~flvG~~lTlADi 155 (758)
|.++.+++++++|+.++..... .+. +...|+.||++|+.+ +|++|+++|+||+
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi 160 (207)
T 1zl9_A 81 GKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDL 160 (207)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCHHHHHHHTHHHHHHHHHHHHHHHHHHHCSSSSSTTSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHhccchhhhHHHHHHHHHHHHhCCCCEEeCCCccHHHH
Confidence 9999999999999988653110 022 788999999999987 9999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
++++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++++-
T Consensus 161 ~~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 202 (207)
T 1zl9_A 161 AIAQHSADLIA--KGGD-FSKFPELKAHAEKIQAI--PQIKKWIETR 202 (207)
T ss_dssp HHHHHHHHHHH--TTCC-CTTCHHHHHHHHHHHHS--HHHHHHHHHS
T ss_pred HHHHHHHHHHH--hCCC-cccChHHHHHHHHHHcC--HHHHHHHHhC
Confidence 99999998633 2233 67899999999999999 9999998753
|
| >1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=201.92 Aligned_cols=155 Identities=16% Similarity=0.317 Sum_probs=132.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.| ++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~s-~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~ 77 (203)
T 1pmt_A 1 MKLY--YTPGS-CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLK 77 (203)
T ss_dssp CEEE--ECTTS-TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHTTC
T ss_pred Ceee--ccCCc-chHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHHHHhC
Confidence 5788 77766 699999999999999987321 9999999668999999999999999998
Q ss_pred ---CCCCCC-HHHHHHHHHHHHhccccCC-------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFYGQN-AYEAGEIDEWLDYTPVFSS-------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~p~~-~~era~v~~wl~~~~~~l~-------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.|+|.+ +.+++++++|+.|..+.+. .+.+...|+.||++|++++||+|+++|+||++
T Consensus 78 ~~~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~ 157 (203)
T 1pmt_A 78 PDRNLIAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAY 157 (203)
T ss_dssp GGGCSSCCTTSHHHHHHHHHHHHHHHTTHHHHGGGGCSSSCTTTHHHHHHHHHHHHHHHHHHHTTSSBTTBSSCCHHHHH
T ss_pred CccccCCCCCcHHHHHHHHHHHHHHhhhhhhHHHHhCccCcHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCCCHHHHH
Confidence 699988 6999999999998865432 14677889999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++++
T Consensus 158 l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 197 (203)
T 1pmt_A 158 LFTLSQWAPH--VALD-LTDLSHLQDYLARIAQR--PNVHSALVT 197 (203)
T ss_dssp HHHHHSSTGG--GTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCC-ccccHHHHHHHHHHHhC--HHHHHHHHH
Confidence 9999988632 2233 57899999999999999 999998875
|
| >4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=204.35 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=133.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ ++++.+++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 4 ~~Ly--~~~-~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~~ 79 (217)
T 4hz4_A 4 ITLH--YLK-QSCSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQD-GDLVLAEGNAIIQHLLDRY 79 (217)
T ss_dssp EEEE--EES-SSTTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEEE-TTEEEECHHHHHHHHHHHH
T ss_pred EEEe--ecC-CCcHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEEE-CCEeeecHHHHHHHHHHhC
Confidence 6888 665 56899999999999999987532 99999996 8999999999999999998
Q ss_pred C----CCCC-CHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 100 N----FYGQ-NAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 100 ~----L~p~-~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
+ |+|. ++.+++++++|+.++. .+.+ +.+...|+.||++|++++|++|+++|+|
T Consensus 80 ~~~~~L~p~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 158 (217)
T 4hz4_A 80 DTENRFTPAHKTDAYSNYVYWLAISA-SMFSANLLALVSKKGDLGDFAQYTNAQVGLYFSHVEKSLEGKTWIVGEQLTGA 158 (217)
T ss_dssp CTTCSSSCCSSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHTTTCSSSSSSSCCHH
T ss_pred CCcccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHH
Confidence 4 9998 9999999999999877 3221 4677889999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+++++.+.++... + ....+|+|.+|+++|.++ |++++++++-
T Consensus 159 Di~l~~~l~~~~~~--~--~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (217)
T 4hz4_A 159 DFALSFPLQWGLNY--V--NKADYPNITRYLEQIETH--PAYLKANEKT 201 (217)
T ss_dssp HHHHHHHHHHHTTT--S--CGGGCHHHHHHHHHHHTS--HHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--C--ccccCchHHHHHHHHhcC--HHHHHHHHhc
Confidence 99999999986322 2 367899999999999999 9999998874
|
| >1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=201.86 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=132.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~ 77 (201)
T 1f2e_A 1 MKLF--ISP-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQN 77 (201)
T ss_dssp CEEE--ECT-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHTC
T ss_pred Ceee--ecC-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHHHHHhC
Confidence 5788 654 67999999999999999987321 9999999779999999999999999998
Q ss_pred ---CCCCC-CHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFYGQ-NAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~p~-~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.|+|. ++.+++++++|+.|+.+.+.+ +.+...|+.||++|++++||+|+++|+||++
T Consensus 78 ~~~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 157 (201)
T 1f2e_A 78 PASGLAPAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIY 157 (201)
T ss_dssp TTTCSSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHSCSSSSSSSCCHHHHH
T ss_pred CCcCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHHhccCceecCCCCcHHHHH
Confidence 69998 689999999999987654321 4567889999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.++.. .+.. ...||+|.+|+++|.++ |++++++++
T Consensus 158 ~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 197 (201)
T 1f2e_A 158 LYVMLGWPAY--VGID-MAAYPALGAYAGKIAQR--PAVGAALKA 197 (201)
T ss_dssp HHHHTTSGGG--GTCC-GGGCHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCC-cccchHHHHHHHHHHcC--HHHHHHHHh
Confidence 9999988632 2333 57899999999999999 999998764
|
| >4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=209.62 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=133.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++
T Consensus 1 M~~~Ly--~~~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~ 78 (214)
T 4id0_A 1 MSLTLF--HNPASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYLDQ 78 (214)
T ss_dssp -CEEEE--ECSSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHHHHH
T ss_pred CceEEe--cCCCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHHHHH
Confidence 678999 899999999999999999999876431 89999996799999999999999999
Q ss_pred hC---CCCCCCHHHHHHHHHHHHhccccCCh-------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 98 VG---NFYGQNAYEAGEIDEWLDYTPVFSSG-------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 98 ~~---~L~p~~~~era~v~~wl~~~~~~l~~-------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
++ .|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|+.+ +|++
T Consensus 79 ~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~---~G~~ 155 (214)
T 4id0_A 79 QHVGNPLIPRDGSARWRRLTLAALADGIMDASVLVRYELALRAPEKHWEQWLDGQRDKIRRALAVLEAEAIAE---LASH 155 (214)
T ss_dssp TSCSSCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHTHHH---HHHC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHHhhhh---ccCC
Confidence 98 59999999999999999887654321 35778899999999877 7999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+|||++++.+.++............||+|.+|+++|.++ |+|+++++.
T Consensus 156 ~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~ 205 (214)
T 4id0_A 156 FDIAAISVACALGYLDFRHPDLEWRQDHPQLAAWYFEISQR--PSMLATRPP 205 (214)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTSCCSSSCHHHHHHHHHHTTS--HHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHHcC--hhHHhhCCC
Confidence 99999999999998743333333467899999999999999 999887543
|
| >2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=204.44 Aligned_cols=157 Identities=16% Similarity=0.264 Sum_probs=133.7
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++
T Consensus 1 M~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~ 77 (221)
T 2imi_A 1 MSNLVLY--TLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDD-NGTIITESHAIMIYLVT 77 (221)
T ss_dssp -CCEEEE--ECTTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEE-TTEEEESHHHHHHHHHH
T ss_pred CCceEEe--eCCCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEEE-CCEEEeeHHHHHHHHHH
Confidence 54 7999 888999999999999999999987532 99999975 89999999999999999
Q ss_pred hC----CCCCCCHHHHHHHHHHHHhccccCC----------------------hHHHHHHHHHHHHhcccCCcccCCCCC
Q 043341 98 VG----NFYGQNAYEAGEIDEWLDYTPVFSS----------------------GSEFENACTYVDKYLERRTFVVGHSLS 151 (758)
Q Consensus 98 ~~----~L~p~~~~era~v~~wl~~~~~~l~----------------------~~~l~~~L~~Le~~L~~~~flvG~~lT 151 (758)
++ .|+|.++.+++++++|+.|..+.+. .+.+...|+.||++|++ +||+|+++|
T Consensus 78 ~~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~t 156 (221)
T 2imi_A 78 KYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFIFERILFFGKSDIPEDRVEYVQKSYELLEDTLVD-DFVAGPTMT 156 (221)
T ss_dssp HHCSSSTTSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHCSS-SBTTBSSCC
T ss_pred hcCCCcCCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcC-CccCCCCCC
Confidence 98 3999999999999999987654321 14678889999999999 999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+++++.+.++.. ..+.. ...+|+|.+|+++|.++ |++++++..
T Consensus 157 ~ADi~l~~~l~~~~~-~~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 202 (221)
T 2imi_A 157 IADFSCISTISSIMG-VVPLE-QSKHPRIYAWIDRLKQL--PYYEEANGG 202 (221)
T ss_dssp HHHHHHHHHHHHHTT-TTTCC-TTTCHHHHHHHHHHHTS--TTHHHHTHH
T ss_pred HHHHHHHHHHHHHHh-hcCCC-cccCchHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999988632 12222 57899999999999999 999998654
|
| >3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=204.30 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=135.7
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
.|+|| ++..++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++
T Consensus 5 ~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d-~g~~l~eS~aI~~ 81 (224)
T 3gtu_B 5 SMVLG--YWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLD-GKNKITQSNAILR 81 (224)
T ss_dssp CEEEE--EESSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEE-TTEEEESHHHHHH
T ss_pred CcEEE--EeCCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEE-CCEEeecHHHHHH
Confidence 37999 899999999999999999999987421 77999975 8999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHH
Q 043341 94 YIGRVGNFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDI 155 (758)
Q Consensus 94 yL~~~~~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi 155 (758)
||+++++|+|.++.+++++++|+.+...... .+.+...|+.||++|++++|++|+++|+||+
T Consensus 82 yL~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 161 (224)
T 3gtu_B 82 YIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDF 161 (224)
T ss_dssp HHHHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCcHHHH
Confidence 9999999999999999999998765543211 1467788999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
++++.+.++... +......||+|.+|+++|.++ |++++++++-
T Consensus 162 ~l~~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 204 (224)
T 3gtu_B 162 LTYDILDQNRIF--DPKCLDEFPNLKAFMCRFEAL--EKIAAYLQSD 204 (224)
T ss_dssp HHHHHHHHHHHH--CGGGGTTCHHHHHHHHHHHTS--HHHHHHHHCH
T ss_pred HHHHHHHHHHhh--ChhhhccCcHHHHHHHHHHcC--HHHHHHHhCC
Confidence 999999986322 222467899999999999999 9999998764
|
| >2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=203.84 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=135.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCC--C--cEEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSN--G--SKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~--g--~~l~ES~aIl~yL~~~~~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++| | .+|+||.+|++||+++++
T Consensus 6 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~yL~~~~~ 83 (211)
T 2wb9_A 6 FKLW--YFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFK 83 (211)
T ss_dssp EEEE--EESSCGGGHHHHHHHHHTTCCCEEEEECTTTHHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHHHHHHHHTT
T ss_pred eEEE--EeCCCCchHHHHHHHHHcCCCceEEEechhhHHHhCcCCCCCCCCEEEECCCCccceeecCHHHHHHHHHHHcC
Confidence 7898 888899999999999999999987542 8999999855 5 999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC----------------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS----------------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIA 156 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~----------------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~ 156 (758)
|+|.++.+++++++|+.++.. +. .+.+...|+.||++|+. ++|++|+++|+||++
T Consensus 84 l~p~~~~~~a~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 162 (211)
T 2wb9_A 84 MMGETDEEYYLIERIIGECED-LYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLF 162 (211)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTSCTTTHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSCSSTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEeCCCccHHHHH
Confidence 999999999999999998752 21 13467789999999988 799999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHH-HhhccchHHHHHHhh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSL-SAEYSDSLDEVTATY 202 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i-~~~~~p~~~~~l~~~ 202 (758)
+++.+.++... ........+|+|.+|+++| .++ |++++++++-
T Consensus 163 l~~~l~~~~~~-~~~~~~~~~p~l~~w~~~~~~~~--p~~~~~~~~~ 206 (211)
T 2wb9_A 163 LFTTLTHVMET-VPGFLEQKFPKLHEFHKSLPTSC--SRLSEYLKKR 206 (211)
T ss_dssp HHHHHHHHHHH-STTHHHHHCHHHHHHHHHGGGGC--HHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCccccccCcHHHHHHHHHHhcC--HhHHHHHHhC
Confidence 99999986322 1122356899999999999 999 9999998753
|
| >4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=208.36 Aligned_cols=154 Identities=14% Similarity=0.267 Sum_probs=134.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||+++..
T Consensus 23 ~~Ly--~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~~~~~ 100 (230)
T 4hz2_A 23 MRIY--GMNGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFAEGTP 100 (230)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHHTTST
T ss_pred heee--CCCCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHhccCC
Confidence 7999 888999999999999999999997543 99999996699999999999999999878
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
|+|.++.+++++++|+.|+.+.+.+ +.+...|+.||++|++++||+|+++|+||
T Consensus 101 L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~AD 180 (230)
T 4hz2_A 101 WLPPPGLARTRVHEWLFFEQYSHEPYIAVARYLKSWLRQAHLHEARLADCATRGAAALDVMEQHLAGEPWLVGEGPTIAD 180 (230)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSTTSCCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHhhcccchHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHH
Confidence 9999999999999999887654321 45677899999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
|++++.+.++.. .+.. ...||+|.+|+++|.++ |+|+++.
T Consensus 181 i~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~ 220 (230)
T 4hz2_A 181 LALFAYTHRAEE--ADFD-LAQWPAVLAWVDRVAAL--PGINLIP 220 (230)
T ss_dssp HHHHHHHTTGGG--GTCC-GGGSHHHHHHHHHHHTS--TTCCCCC
T ss_pred HHHHHHHHHHHh--cCCC-hhhChHHHHHHHHHHcC--ccccccC
Confidence 999999998632 2333 57899999999999999 9887654
|
| >1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=203.21 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=131.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 3 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 79 (211)
T 1gnw_A 3 IKVF--GHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFED-GDLKLFESRAITQYIAHRYE 79 (211)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEE-TTEEEECHHHHHHHHHHHTT
T ss_pred eEEE--eCCCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEE-CCEEEeCHHHHHHHHHHHcC
Confidence 7999 888899999999999999999987532 99999997 8999999999999999998
Q ss_pred ----CCCCCC---HHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCc
Q 043341 100 ----NFYGQN---AYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTF 144 (758)
Q Consensus 100 ----~L~p~~---~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~f 144 (758)
.|+|.+ +.+++++++|+.|..+.+.+ +.+...|+.||++|++++|
T Consensus 80 ~~~~~L~p~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 159 (211)
T 1gnw_A 80 NQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKY 159 (211)
T ss_dssp TSSSCCSCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 399998 99999999999887654321 3567789999999999999
Q ss_pred ccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 145 VVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 145 lvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
|+|+++|+||+++++.+.++... ........+|+|.+|+++|.++ |+++++
T Consensus 160 l~G~~~t~ADi~~~~~l~~~~~~-~~~~~~~~~p~l~~w~~~~~~~--p~~~~~ 210 (211)
T 1gnw_A 160 LAGETFTLTDLHHIPAIQYLLGT-PTKKLFTERPRVNEWVAEITKR--PASEKV 210 (211)
T ss_dssp SSSSSCCHHHHTTHHHHHHHTTS-GGGHHHHTSHHHHHHHHHHHSS--HHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHhc-CcchhhccCchHHHHHHHHHcC--chhhhh
Confidence 99999999999999999986321 1112357899999999999999 998864
|
| >3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=203.54 Aligned_cols=153 Identities=17% Similarity=0.328 Sum_probs=132.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++
T Consensus 2 ~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 78 (216)
T 3ay8_A 2 SSLKLY--HFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDD-NNFVLWESRAIACYLADK 78 (216)
T ss_dssp CCCEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEEE-TTEEEECHHHHHHHHHHH
T ss_pred CceEEe--cCCCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEEE-CCEEEEcHHHHHHHHHHH
Confidence 448999 888899999999999999999987432 89999995 899999999999999999
Q ss_pred C----CCCCCCHHHHHHHHHHHHhccccCC----------------------hHHHHHHHHHHHHhcccCCcccCCCCCH
Q 043341 99 G----NFYGQNAYEAGEIDEWLDYTPVFSS----------------------GSEFENACTYVDKYLERRTFVVGHSLSI 152 (758)
Q Consensus 99 ~----~L~p~~~~era~v~~wl~~~~~~l~----------------------~~~l~~~L~~Le~~L~~~~flvG~~lTl 152 (758)
+ .|+|.++.+++++++|+.|..+.+. .+.+...|+.||++|++++||+|+++|+
T Consensus 79 ~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ 158 (216)
T 3ay8_A 79 YGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLKDDLNSTLSFLNQFLEKTKWVAADHPTI 158 (216)
T ss_dssp HCSSSTTSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCH
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHhhcchHHHHHHHhhHHHhcCCCCcCHHHHHHHHHHHHHHHHHHccCCCccCCCCCH
Confidence 8 3999999999999999987654321 1467788999999999999999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHH
Q 043341 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDE 197 (758)
Q Consensus 153 ADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~ 197 (758)
||+++++.+.++.. .+.. ...+|+|.+|+++|.++ |+++.
T Consensus 159 ADi~~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~ 198 (216)
T 3ay8_A 159 ADTSIYASMSSILA--VGWD-ISSFPNIQRWIKDCLLL--PGAPE 198 (216)
T ss_dssp HHHHHHHHHHHHHH--HCCC-CTTCHHHHHHHHHHTTS--TTHHH
T ss_pred HHHHHHHHHHHHHh--cCCC-hhhChhHHHHHHHHHcC--Cchhh
Confidence 99999999998632 2333 57899999999999999 99943
|
| >2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=202.74 Aligned_cols=157 Identities=19% Similarity=0.282 Sum_probs=133.4
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++|
T Consensus 1 m~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~l 77 (204)
T 2ws2_A 1 MVHYKLT--YFNGRGAAEIIRQVFVLAGQDYEDVRLTHEEWPKHKASMPFGQLPVLEV-DGKQLPQSVAIVRYLARKFGY 77 (204)
T ss_dssp CCCEEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECTTTGGGTGGGSTTSCSCEEEE-TTEEEESHHHHHHHHHHHHTC
T ss_pred CCccEEE--EeCCCchHHHHHHHHHHcCCCceEEEecHhhHHHhhhcCCCCCCCEEEE-CCEEeecHHHHHHHHHHHcCC
Confidence 44 7999 888999999999999999999987532 99999997 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC---------------------hHH----HHHHHHHHHHhcccC--CcccCCCCCHhH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS---------------------GSE----FENACTYVDKYLERR--TFVVGHSLSIVD 154 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~---------------------~~~----l~~~L~~Le~~L~~~--~flvG~~lTlAD 154 (758)
+|.++.+++++++|+.++.+... .+. +...|+.||++|+.+ +||+|+++|+||
T Consensus 78 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~AD 157 (204)
T 2ws2_A 78 AGKSAWEEAVVDSIADQFKDFLNEVRPYFKVLLGMDQGDLKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFAD 157 (204)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTTTSCCSCSHHHHTTTTHHHHHHHHHHHHHHHHHHCSSSSSTTSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhccchhhHHHHHHHHHHHHHhCCCCEEeCCcccHHH
Confidence 99999999999999987643100 022 788999999999887 999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++++. ... . .+......+|+|.+|+++|.++ |++++++++-
T Consensus 158 i~~~~~-~~~-~--~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 199 (204)
T 2ws2_A 158 LYVAEM-GFT-E--HYPKLYDGFPEVKAHAEKVRSN--PKLKKWIETR 199 (204)
T ss_dssp HHHHHG-GGC-T--TSTTTTTTCHHHHHHHHHHTTS--HHHHHHHHHS
T ss_pred HHHHHH-HHH-h--cCcchhhhCchHHHHHHHHHcC--HHHHHHHHhC
Confidence 999998 432 1 2223357899999999999999 9999998753
|
| >1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=200.62 Aligned_cols=159 Identities=12% Similarity=0.204 Sum_probs=133.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCc----EEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGS----KLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~----~l~ES~aIl~yL~~~~~ 100 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |+||+|+++|+. +|+||.||++||+++++
T Consensus 6 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~yL~~~~~ 83 (211)
T 1oe8_A 6 IKVI--YFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHH 83 (211)
T ss_dssp EEEE--ESCTTSTTHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHHHHHHTT
T ss_pred eEEE--EeCCCChHHHHHHHHHHcCCCceEEEechHhHHHhcccCCCCCCCEEEECCccccceeeccHHHHHHHHHHHcC
Confidence 6888 888999999999999999999998643 999999986654 59999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccC--------Ch-------------HHHHHHHHHHHHhc--ccCCcccCCCCCHhHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFS--------SG-------------SEFENACTYVDKYL--ERRTFVVGHSLSIVDIAI 157 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l--------~~-------------~~l~~~L~~Le~~L--~~~~flvG~~lTlADi~l 157 (758)
|+|.++.+++++++|+.++.... .+ +.+...|+.||++| ++++|++|+++|+||+++
T Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l 163 (211)
T 1oe8_A 84 MMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVL 163 (211)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCCcEeeCCCCchHHHHH
Confidence 99999999999999998864321 11 34667899999999 888999999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.+.++.....+. ....+|+|.+|+++|.+++ |++++++.+
T Consensus 164 ~~~l~~~~~~~~~~-~~~~~p~l~~w~~~~~~~~-p~~~~~~~~ 205 (211)
T 1oe8_A 164 IAVIDHVTDLDKEF-LTGKYPEIHKHRENLLASS-PRLAKYLSD 205 (211)
T ss_dssp HHHHHHHHHHCTTT-TTTSCHHHHHHHHHHHHHC-HHHHHHHHH
T ss_pred HHHHHHHHhcCchh-hhhcCcHHHHHHHHHHhcC-HhHHHHHHh
Confidence 99999863321122 2568999999999998864 778888765
|
| >2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=202.64 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=134.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLL 92 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl 92 (758)
|+|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||+
T Consensus 1 M~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d-~~~~l~eS~aI~ 77 (218)
T 2c4j_A 1 MPMTLG--YWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLID-GTHKITQSNAIL 77 (218)
T ss_dssp -CEEEE--EESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEE-TTEEEESHHHHH
T ss_pred CCcEEE--EeCCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEE-CCeEeeeHHHHH
Confidence 778999 888999999999999999999986321 48999985 889999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhccccC--------C----------hHHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 93 RYIGRVGNFYGQNAYEAGEIDEWLDYTPVFS--------S----------GSEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 93 ~yL~~~~~L~p~~~~era~v~~wl~~~~~~l--------~----------~~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
+||+++++|+|.++.+++++++|+.+..... . .+.+...|+.||++|++++|++|+++|+||
T Consensus 78 ~yL~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD 157 (218)
T 2c4j_A 78 RYIARKHNLCGESEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVD 157 (218)
T ss_dssp HHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCcHHH
Confidence 9999999999999999999999977643210 0 145778899999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|++++.+.++... +......||+|.+|+++|.++ |++++++.+-
T Consensus 158 i~l~~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 201 (218)
T 2c4j_A 158 FIAYDVLERNQVF--EPSCLDAFPNLKDFISRFEGL--EKISAYMKSS 201 (218)
T ss_dssp HHHHHHHHHHHHH--STTTTTTCHHHHHHHHHHHHS--HHHHHHHHST
T ss_pred HHHHHHHHHHHhh--CHHhHhhchHHHHHHHHHHhC--HHHHHHHhcC
Confidence 9999999886322 222357899999999999999 9999998763
|
| >3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=201.97 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=134.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------CCccEEEeCCCcEEechHHHHHHHHHhC---CCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYG 103 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p 103 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ +|.+|+||.+|++||++++ .|+|
T Consensus 3 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~P~g~vP~L~~-~~~~l~eS~aI~~yL~~~~~~~~L~p 79 (214)
T 3cbu_A 3 LKLC--GFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYMIT-ESGSLCESEVINEYLEAAYPQTPLLP 79 (214)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCEEEEECCTTSSCTTTSTTCCSCEEEE-TTEEECSHHHHHHHHHHHCTTSCSSC
T ss_pred EEEe--cCCCCcHhHHHHHHHHhCCCCCEEEecCcccCCcccCCCCCCCEEEE-CCeeeecHHHHHHHHHHhCCCCCCCC
Confidence 7999 888899999999999999999998543 89999998 5559999999999999998 7999
Q ss_pred CCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 104 QNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
.++.+++++++|+.|+.+.+. .+.+...|+.||++|++++||+|+++|+||+++++
T Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 159 (214)
T 3cbu_A 80 RDPMQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAV 159 (214)
T ss_dssp SSHHHHHHHHHHHHHHHHHTHHHHHTTHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHH
Confidence 999999999999998766432 14567889999999999999999999999999999
Q ss_pred HHhhhhcccccccccccChh---HHHHHHHHHhhccchHHHHHHhh
Q 043341 160 ALAGTGQRWDSLRKSKKYQN---LVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~---L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.+.++....... ....+|+ |.+|+++|.++ |++++++...
T Consensus 160 ~l~~~~~~~~~~-~~~~~p~~~~l~~w~~~~~~~--p~~~~~~~~~ 202 (214)
T 3cbu_A 160 HLPLVSSCTKII-YGKDLLADLPVKEYLKTLSER--PSVQKVNADR 202 (214)
T ss_dssp HHHHHHHHHHHH-HSSCTTTTSCHHHHHHHHHTC--HHHHHHHHHH
T ss_pred HHHHHHHhcccc-CHhhccchhhHHHHHHHHHcC--HHHHHHHHHH
Confidence 998863221111 1367898 99999999999 9999988753
|
| >2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=200.38 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=131.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.| ++.+++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~s-~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~ 77 (201)
T 2pvq_A 1 MKLY--YKVGA-ASLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIGDHS 77 (201)
T ss_dssp CEEE--ECTTS-TTHHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHHHHTS
T ss_pred Ceee--eCCCc-cHHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHHHHhC
Confidence 5788 77766 599999999999999987421 9999999669999999999999999998
Q ss_pred ---CCCCCC-HHHHHHHHHHHHhccccCC-------------------hHHHHHHHHHHHHhcc-cCCcccCCCCCHhHH
Q 043341 100 ---NFYGQN-AYEAGEIDEWLDYTPVFSS-------------------GSEFENACTYVDKYLE-RRTFVVGHSLSIVDI 155 (758)
Q Consensus 100 ---~L~p~~-~~era~v~~wl~~~~~~l~-------------------~~~l~~~L~~Le~~L~-~~~flvG~~lTlADi 155 (758)
.|+|.+ +.+++++++|+.|+. .+. .+.+...|+.||++|+ +++||+|+++|+||+
T Consensus 78 ~~~~L~p~~~~~~~a~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~~~t~ADi 156 (201)
T 2pvq_A 78 DVAAFKPAYGSIERARLQEALGFCS-DLHAAFSGLFAPNLSEEARAGVIANINRRLGQLEAMLSDKNAYWLGDDFTQPDA 156 (201)
T ss_dssp SCGGGCCCTTSHHHHHHHHHHHHHH-HHHHHHHGGGCTTCCHHHHHHHHHHHHHHHHHHHHHCCTTCSBTTBSSCCHHHH
T ss_pred CcccCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcccHHHH
Confidence 699988 799999999998876 321 1467788999999999 899999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++++.+.++.. .+.. ...||+|.+|+++|.++ |++++++++
T Consensus 157 ~~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 197 (201)
T 2pvq_A 157 YASVIIGWGVG--QKLD-LSAYPKALKLRERVLAR--PNVQKAFKE 197 (201)
T ss_dssp HHHHHHHHHHH--TTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCC-chhhHHHHHHHHHHHcC--HHHHHHHHh
Confidence 99999988632 2233 57899999999999999 999998765
|
| >1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=204.56 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=133.9
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++
T Consensus 1 M~~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vPvL~~-~g~~l~eS~aI~~yL~~~ 77 (221)
T 1k3y_A 1 AEKPKLH--YFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEI-DGMKLVQTRAILNYIASK 77 (221)
T ss_dssp CCCCEEE--EESSSTTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEEE-TTEEEESHHHHHHHHHHH
T ss_pred CCCcEEE--EeCCCchhHHHHHHHHHcCCCceEEEeCchhHHHHHhhhcCCCCCCCCEEEE-CCEEEecHHHHHHHHHHH
Confidence 44 7999 889999999999999999999987431 89999996 889999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccC--------C-------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHH
Q 043341 99 GNFYGQNAYEAGEIDEWLDYTPVFS--------S-------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDI 155 (758)
Q Consensus 99 ~~L~p~~~~era~v~~wl~~~~~~l--------~-------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi 155 (758)
++|+|.++.+++++++|+.+....+ . .+.+...|+.||++|+. ++||+|+++|+||+
T Consensus 78 ~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi 157 (221)
T 1k3y_A 78 YNLYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADI 157 (221)
T ss_dssp TTCSCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCcccHHHH
Confidence 9999999999999999998765321 1 03456688999999976 89999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++++.+.++... +......||+|.+|+++|.++ |++++++.+
T Consensus 158 ~l~~~l~~~~~~--~~~~~~~~p~l~~w~~~i~~~--p~~~~~~~~ 199 (221)
T 1k3y_A 158 HLVELLYYVEEL--DSSLISSFPLLKALKTRISNL--PTVKKFLQP 199 (221)
T ss_dssp HHHHHHHHHHHH--CTTTTTTCHHHHHHHHHHHHS--HHHHHHHST
T ss_pred HHHHHHHHHHhc--CchhhhcCchHHHHHHHHHhC--HHHHHHHHh
Confidence 999999986321 122357899999999999999 999998764
|
| >1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=204.09 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=132.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++++|
T Consensus 4 ~~Ly--~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~YL~~~~~L 80 (221)
T 1b48_A 4 PKLY--YFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEI-DGMMLTQTRAILSYLAAKYNL 80 (221)
T ss_dssp CEEE--BCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEE-TTEEECCHHHHHHHHHHHTTC
T ss_pred eEEE--EeCCCcchHHHHHHHHHcCCCceEEEeCchHhHHHHHhcCCCCCCCCCEEEE-CCEEEecHHHHHHHHHHhCCC
Confidence 7999 889999999999999999999886432 89999997 889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccC--------C-------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFS--------S-------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l--------~-------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~ 158 (758)
+|.++.+++++++|+.+....+ . .+.+...|+.||++|+. ++|++|+++|+||++++
T Consensus 81 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~ 160 (221)
T 1b48_A 81 YGKDLKERVRIDMYADGTQDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLL 160 (221)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSSSSSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHHHHH
Confidence 9999999999999998765321 1 13456788999999975 89999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+.++... +......+|+|.+|+++|.++ |++++++.+
T Consensus 161 ~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 199 (221)
T 1b48_A 161 EAILMVEEL--SAPVLSDFPLLQAFKTRISNI--PTIKKFLQP 199 (221)
T ss_dssp HHHHHHHTT--CTTGGGGCHHHHHHHHHHHTS--HHHHHHHST
T ss_pred HHHHHHhhc--CchhhhcChHHHHHHHHHHhC--HHHHHHHhh
Confidence 999986321 122357899999999999999 999998764
|
| >4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=209.07 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=133.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCC--cEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNG--SKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g--~~l~ES~aIl~yL~~~ 98 (758)
++|| +++ |+++++++++|+++|++|+.+.+ |+||+|+++|| .+|+||.+|++||+++
T Consensus 4 ~~Ly--~~~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~YL~~~ 80 (244)
T 4ecj_A 4 IDLY--TAA-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYLAEK 80 (244)
T ss_dssp EEEE--ECS-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHHHH
T ss_pred EEEe--cCC-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHHHHHh
Confidence 6888 664 99999999999999999998543 99999999777 5999999999999999
Q ss_pred C-CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 99 G-NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 99 ~-~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
+ .|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++|++| ++|+|
T Consensus 81 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G-~~T~A 159 (244)
T 4ecj_A 81 TGQLMPADVKGRSRVIQWLMFQMGGVGPMQGQANVFFRYFPEKLQGAIDRYQHETRRLYEVLDGRLGEAEYLAG-DYSIA 159 (244)
T ss_dssp HTCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTB-SCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhHHHhhHhheeccCCccCHHHHHHHHHHHHHHHHHHHHHhccCCeeCC-CCCHH
Confidence 9 89999999999999999887654331 4567789999999999999999 99999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+++++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++++.
T Consensus 160 Di~l~~~l~~~~~--~~~~-~~~~P~l~~w~~r~~~~--p~~~~~~~~~ 203 (244)
T 4ecj_A 160 DIATYPWVRIHDW--SGVA-VDGLDNLQRWIAAIEAR--PAVQRGLLVP 203 (244)
T ss_dssp HHHHHHHHHTHHH--HTCC-CTTCHHHHHHHHHHHTC--HHHHHHTTCS
T ss_pred HHHHHHHHHHHHh--cCCC-cccCHHHHHHHHHHHcC--HHHHHHHhcc
Confidence 9999999998632 2333 57899999999999999 9999987653
|
| >4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=208.16 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=137.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 13 ~~Ly--~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vPvL~~-~g~~l~eS~aI~~YL~~~~~~~ 89 (231)
T 4dej_A 13 MTLY--SGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVD-RELVLYNAQIIMEYLDERFPHP 89 (231)
T ss_dssp CEEE--ECSSCHHHHHHHHHHHHHTCBCEEEECCSSCCCHHHHHHCCSSSCCSEEEE-TTEEEESHHHHHHHHHHHSCSS
T ss_pred EEEE--cCCCChHHHHHHHHHHHcCCCcEEEEcCcccCCHHHHHhCCCCCCCCEEEE-CCEEEEcHHHHHHHHHHHCCCC
Confidence 7999 888999999999999999999998543 79999996 8999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCh-------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhc
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSSG-------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~~-------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~ 166 (758)
.|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|++++||+|+++|+|||++++.+.++..
T Consensus 90 ~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~ 169 (231)
T 4dej_A 90 PLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPA 169 (231)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSHHHHHHHHHHHHSTTHHHHCSBTTBSSCCTTHHHHHHHHHTHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 59999999999999999998876553 46788899999999999999999999999999999998733
Q ss_pred ccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 167 RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 167 ~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
...... ...+|+|.+|+++|.++ |+|++++.+
T Consensus 170 ~~~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 201 (231)
T 4dej_A 170 YGIDLE-GQGAKEIKQYMVRLFER--KTFQDSLTE 201 (231)
T ss_dssp HTCCCC-STTHHHHHHHHHHHHTC--HHHHHHCCH
T ss_pred cCCCCC-hhhCHHHHHHHHHHhcC--HHHHHHccC
Confidence 222221 35899999999999999 999998765
|
| >2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=205.14 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=133.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 5 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~ 81 (219)
T 2vo4_A 5 VVLL--DFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIH-NGKPICESLIAVQYIEEVWNDR 81 (219)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCTTSCCHHHHHHCTTTCCSCEEEE-TTEEEESHHHHHHHHHHHSTTS
T ss_pred eEEE--eccCCchHHHHHHHHHHcCCCceEEecCcccCCHHHHHhCCCCCcCCEEEE-CCEeeehHHHHHHHHHHhCCCC
Confidence 7999 888999999999999999999987532 69999996 8999999999999999997
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
.|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|++++|++|+++|+||+++++.+
T Consensus 82 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l 161 (219)
T 2vo4_A 82 NPLLPSDPYQRAQTRFWADYVDKKIYDLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLGDKTYFGGDNLGFVDIALVPFY 161 (219)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhccchhHHHhhccCcHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHHHHHHHHHH
Confidence 58999999999999999987764321 456778999999999999999999999999999998
Q ss_pred hhhhcc--cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 162 AGTGQR--WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 162 ~~l~~~--~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.++... ..+......+|+|.+|+++|.++ |++++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~ 200 (219)
T 2vo4_A 162 TWFKAYETFGTLNIESECPKFIAWAKRCLQK--ESVAKSLP 200 (219)
T ss_dssp TTHHHHHHHTTCCHHHHCHHHHHHHHHHHTS--HHHHTTCC
T ss_pred HHHHHHHHhcCcchhhcChHHHHHHHHHhcC--hHHHHhCC
Confidence 875321 12333346899999999999999 99987654
|
| >1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=201.25 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=132.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++
T Consensus 1 m~~~Ly--~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 77 (218)
T 1r5a_A 1 MTTVLY--YLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDD-HGLVLWESRVILSYLVSA 77 (218)
T ss_dssp -CEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEE-TTEEEECHHHHHHHHHHH
T ss_pred CeEEEE--eCCCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEEE-CCEEEEcHHHHHHHHHHH
Confidence 678999 888999999999999999999987542 99999995 899999999999999999
Q ss_pred C----CCCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHh
Q 043341 99 G----NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIV 153 (758)
Q Consensus 99 ~----~L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlA 153 (758)
+ .|+|.++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|+++|+|
T Consensus 78 ~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 157 (218)
T 1r5a_A 78 YGKDENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQWSAANHFTIA 157 (218)
T ss_dssp HCCSSCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTSSSSSSSSCCHH
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccCccccCCCCCHH
Confidence 7 49999999999999999887653321 4577889999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH-H-HHH
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL-D-EVT 199 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~-~-~~l 199 (758)
|+++++.+.++.. .+.. ...+|+|.+|+++|.+++ |++ + ++.
T Consensus 158 Di~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~~-p~~q~~~~~ 201 (218)
T 1r5a_A 158 DIALCVTVSQIEA--FQFD-LHPYPRVRAWLLKCKDEL-EGHGYKEIN 201 (218)
T ss_dssp HHHHHHHHHHHHH--TTCC-CTTCHHHHHHHHHHHHHH-GGGTHHHHH
T ss_pred HHHHHHHHHHHHh--CCCC-hhhCchHHHHHHHHHHhC-CCcchhhhc
Confidence 9999999998632 2333 578999999999999884 678 5 443
|
| >1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=204.78 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=133.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++++|
T Consensus 5 ~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~YL~~~~~L 81 (229)
T 1vf1_A 5 PVLY--YFNGRGKMESIRWLLAAAGVEFEEVFLETREQYEKLLQSGILMFQQVPMVEI-DGMKLVQTRAILNYIAGKYNL 81 (229)
T ss_dssp CEEE--ECSSCTTTHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHTCSTTSCSCEEEE-TTEEEESHHHHHHHHHHHTTC
T ss_pred eEEE--EeCCCchhHHHHHHHHHcCCCCeeEecCcHHHHHHHHHhcCCCCCCCCEEEE-CCEEEEcHHHHHHHHHHhCCC
Confidence 7999 888999999999999999999987432 89999996 889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC---------h------------HHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS---------G------------SEFENACTYVDKYLER--RTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~---------~------------~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~ 158 (758)
+|.++.+++++++|+.++...+. . +.+...|+.||++|+. ++||+|+++|+||++++
T Consensus 82 ~p~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~l~ 161 (229)
T 1vf1_A 82 YGKDLKERALIDMYVGGTDDLMGFLLSFPFLSAEDKVKQCAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLL 161 (229)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCcHHHHHHH
Confidence 99999999999999987653210 0 3456688999999976 89999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+.++... +......+|+|.+|+++|.++ |++++++.+
T Consensus 162 ~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 200 (229)
T 1vf1_A 162 EAILMVEEK--KSDALSGFPLLQAFKKRISSI--PTIKKFLAP 200 (229)
T ss_dssp HHHHHHHHH--CTTTTTTCHHHHHHHHHHHHS--HHHHHHHST
T ss_pred HHHHHHHhc--CcchhhhChHHHHHHHHHHhC--hHHHHHHhh
Confidence 999886322 112357899999999999999 999998764
|
| >2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=202.03 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=133.6
Q ss_pred eEEEecccCCC-----CcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPAD-----SPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s-----~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| +++.| +++.+++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++
T Consensus 19 ~~Ly--~~~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~ 95 (230)
T 2ycd_A 19 ITVF--ERSPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQ-GDLILFESGAIVMHIAQ 95 (230)
T ss_dssp EEEE--SSCTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEEE-TTEEEECHHHHHHHHHH
T ss_pred EEEe--cCCCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHHHH
Confidence 7898 88887 8999999999999999987422 99999995 99999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 98 VG-NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 98 ~~-~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
++ .|+|.++.+++++++|+.+..+.+.+ +.+...|+.||++|++++||+| ++
T Consensus 96 ~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G-~~ 174 (230)
T 2ycd_A 96 HHSGLLPEDQLRRARTVAWMFAALNTIEPSILNFTTVWLFERNEPWHEARLARTKEQLLKRLDELSAWLGDREWLEG-SF 174 (230)
T ss_dssp HSSSSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTS-SC
T ss_pred hCcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCeeec-CC
Confidence 98 79999999999999999887553321 4567789999999999999999 99
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+||+++++.+.++.. .+ ....+|+|.+|+++|.++ |++++++..
T Consensus 175 t~ADi~l~~~l~~~~~--~~--~~~~~p~l~~w~~~i~~~--p~~~~~~~~ 219 (230)
T 2ycd_A 175 SAADILMICVLRRLES--SG--ILKDYGNLLAYVERGKAR--PAFKRAFDA 219 (230)
T ss_dssp CHHHHHHHHHHGGGGG--GT--GGGGCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--cC--CccCChHHHHHHHHHHcC--HHHHHHHHh
Confidence 9999999999998632 22 257899999999999999 999998875
|
| >3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=207.71 Aligned_cols=156 Identities=12% Similarity=0.172 Sum_probs=133.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 27 ~~Ly--~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~-~g~~l~eS~aI~~YL~~~~~ 103 (243)
T 3qav_A 27 PFVY--WGSGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTD-GDVVVNESTAICMYLEEKYP 103 (243)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEE-TTEEECSHHHHHHHHHHHCT
T ss_pred cEEE--eCCCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEEE-CCEEEecHHHHHHHHHHHCC
Confidence 8999 888999999999999999999997543 99999996 8899999999999999999
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhcc-cCCcccCCCCCH
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLE-RRTFVVGHSLSI 152 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~-~~~flvG~~lTl 152 (758)
.|+|.++.+++++++|+.+...... .+.+...|+.||++|+ +++|++|+++|+
T Consensus 104 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~fl~Gd~~T~ 183 (243)
T 3qav_A 104 KVPLFPSDTTIRAKVYQRMFETSNISTNVMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYLKQTGGFVATKEFTM 183 (243)
T ss_dssp TSCSSCSCHHHHHHHHHHHHHTHHHHHHTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcccchhhhhhhhhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcH
Confidence 4999999999999999865332110 1456778899999999 799999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 153 ADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|||++++.+.++.. .+.+....||+|.+|+++|.++ |+|++++..
T Consensus 184 ADi~l~~~l~~~~~--~~~~~~~~~P~L~~w~~r~~~~--p~~~~~~~~ 228 (243)
T 3qav_A 184 ADVFFFPMVALIVR--QGANLKDSYPNIFKYYNMMMDR--PTIVKTMPP 228 (243)
T ss_dssp HHHHHHHHHHHHHH--TTCCCTTTSHHHHHHHHHHHTS--HHHHHTSCG
T ss_pred HHHHHHHHHHHHHH--cCCccccCCchHHHHHHHHHcC--hHHHhhCCC
Confidence 99999999998732 2333347899999999999999 999988654
|
| >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=209.22 Aligned_cols=158 Identities=10% Similarity=0.142 Sum_probs=136.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCc---EEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGS---KLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~---~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||. +|+||.||++||++++
T Consensus 27 ~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~yL~~~~~ 104 (246)
T 3rbt_A 27 LRLY--HVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYLDEKYT 104 (246)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTBCEEEEECCSSSCCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHHHHHHHCC
T ss_pred eEEE--ecCCCccHHHHHHHHHHcCCCceEEEeCcccCCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHHHHHhhCC
Confidence 7999 888899999999999999999998653 999999997888 9999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC-------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHh
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS-------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~-------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~ 162 (758)
.|+|.++.+++++++|+++....+. .+.+...|+.||++|+. ++||+|+++|+|||++++.+.
T Consensus 105 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~T~ADi~l~~~l~ 184 (246)
T 3rbt_A 105 RHTLHSHDPYVKAQDRLLIERFNELIKGSLECFDTNFAFGSEQIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVE 184 (246)
T ss_dssp SSCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTSSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHHHHHHHHHHH
Confidence 6999999999999999987655321 24678899999999998 799999999999999999998
Q ss_pred hhhccc------ccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 163 GTGQRW------DSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 163 ~l~~~~------~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.... ..+ ....||+|.+|+++|.++ |+|++++..
T Consensus 185 ~~~~~~~~~~~~~~~-~~~~~p~l~~w~~r~~~~--p~~~~~~~~ 226 (246)
T 3rbt_A 185 RLYLLRCVNDRKFVE-KKSLFPNFADWGDQMQLD--DIVKKHAHS 226 (246)
T ss_dssp HHTTHHHHCHHHHHH-HHHTCHHHHHHHHHHHHC--HHHHHTCCC
T ss_pred HHHHHHhhccccccC-ChhhChHHHHHHHHHhcC--HHHHHhcCC
Confidence 863221 111 156899999999999999 999987543
|
| >3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=201.89 Aligned_cols=157 Identities=19% Similarity=0.322 Sum_probs=134.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++
T Consensus 1 m~Ly--~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~ 78 (219)
T 3f6d_A 1 MDFY--YLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYLVEKYG 78 (219)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHHHT
T ss_pred CEEE--eCCCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHHHHhcC
Confidence 5898 889999999999999999999998543 9999999878999999999999999998
Q ss_pred C--------CCCCCHHHHHHHHHHHHhccccCC--------------------h---HHHHHHHHHHHHhcccCCccc-C
Q 043341 100 N--------FYGQNAYEAGEIDEWLDYTPVFSS--------------------G---SEFENACTYVDKYLERRTFVV-G 147 (758)
Q Consensus 100 ~--------L~p~~~~era~v~~wl~~~~~~l~--------------------~---~~l~~~L~~Le~~L~~~~flv-G 147 (758)
. |+|.++.+++++++|+.|..+.+. . +.+...|+.||++|++++||+ |
T Consensus 79 ~~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~gG 158 (219)
T 3f6d_A 79 AHDADLAERLYPSDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGG 158 (219)
T ss_dssp TTSHHHHHHHSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSTTCCSSCCHHHHHHHHHHHHHHHHHTTTCSSTTCS
T ss_pred CCccccccccCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEecC
Confidence 3 999999999999999987654321 1 467788999999999999999 9
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++|+||+++++.+.++. ..+.. ...||+|.+|+++|.+++ |++++....
T Consensus 159 ~~~t~ADi~l~~~l~~~~--~~~~~-~~~~p~l~~w~~~~~~~l-p~~~~~~~~ 208 (219)
T 3f6d_A 159 DDPTIADLSILATIATYE--VAGYD-LRRYENVQRWYERTSAIV-PGADKNVEG 208 (219)
T ss_dssp SSCCHHHHHHHHHHHHHH--HTTCC-GGGSHHHHHHHHHHHHHS-TTHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--HcCCC-hhhChhHHHHHHHHHHhC-ccHHHHHHH
Confidence 999999999999999862 23333 578999999999999832 889885443
|
| >3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=205.52 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=136.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++++ .
T Consensus 24 ~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 101 (241)
T 3vln_A 24 IRIY--SMRFSPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKK 101 (241)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCEEEEEBCTTSCCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHHHHHHSCSSC
T ss_pred EEEE--cCCCCcHHHHHHHHHHHcCCCCeEEecCcccCCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCCCCC
Confidence 7999 888999999999999999999998653 9999999889999999999999999999 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC-----------------hHHHHHHHHHHHHhcccC--CcccCCCCCHhHHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS-----------------GSEFENACTYVDKYLERR--TFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~-----------------~~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~l~~~L 161 (758)
|+|.++.+++++++|+++...... .+.+...|+.||++|+.+ +||+|+++|+||+++++.+
T Consensus 102 L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~ADi~l~~~l 181 (241)
T 3vln_A 102 LLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWF 181 (241)
T ss_dssp CSCSSHHHHHHHHHHHHHHTTHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCCCCCCHHHHHHHHHH
Confidence 999999999999999998765211 145778899999999865 9999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.++..... ......+|+|.+|+++|.++ |++++++++
T Consensus 182 ~~~~~~~~-~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 218 (241)
T 3vln_A 182 ERLEAMKL-NECVDHTPKLKLWMAAMKED--PTVSALLTS 218 (241)
T ss_dssp HHHTTTTC-GGGSTTCHHHHHHHHHHHTS--HHHHHHCCC
T ss_pred HHHHhcCC-ccccccCchHHHHHHHHHcC--HHHHHHhCC
Confidence 98632211 11357899999999999999 999998655
|
| >1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=200.72 Aligned_cols=157 Identities=12% Similarity=0.174 Sum_probs=134.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 9 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 85 (221)
T 1e6b_A 9 LKLY--SYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVD-GDVVINDSFAIIMYLDEKYP 85 (221)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEE-TTEEEESHHHHHHHHHHHSC
T ss_pred eEEE--ecCCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEEE-CCEEEeeHHHHHHHHHHhCC
Confidence 7899 888899999999999999999987532 99999996 8999999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhccc--CCcccCCCCC
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLER--RTFVVGHSLS 151 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~--~~flvG~~lT 151 (758)
.|+|.++.+++++++|+.+..+.+. .+.+...|+.||++|+. ++||+|+++|
T Consensus 86 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 165 (221)
T 1e6b_A 86 EPPLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIY 165 (221)
T ss_dssp SSCSSCSCHHHHHHHHHHHHHHHHTTCC-------------------CCCCCHHHHHHHHHHHHHHTTSCSSBTTBSSCC
T ss_pred CccCCCCCHHHHHHHHHHHHHHhhcccccccHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEecCCCCC
Confidence 7999999999999999987653321 13577889999999988 6999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+|||++++.+.++... .+.. ...+|+|.+|+++|.++ |++++++.+.
T Consensus 166 ~ADi~l~~~l~~~~~~-~~~~-~~~~p~l~~w~~~i~~~--p~~~~~~~~~ 212 (221)
T 1e6b_A 166 LADLFLAPQIHGAINR-FQIN-MEPYPTLAKCYESYNEL--PAFQNALPEK 212 (221)
T ss_dssp HHHHHHHHHHHHHHHH-HCCC-CTTCHHHHHHHHHHTTC--HHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHH-hCCC-cccChHHHHHHHHHHcC--HHHHHhCCcc
Confidence 9999999999876321 2222 47899999999999999 9999887653
|
| >1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=198.74 Aligned_cols=155 Identities=15% Similarity=0.271 Sum_probs=134.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~ 77 (210)
T 1v2a_A 1 MDYY--YSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVD-NGHVVWESYAIVLYLVETYAK 77 (210)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHHCS
T ss_pred CeEE--eCCCCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCCCCCcCeEEE-CCEEEEcHHHHHHHHHHHcCC
Confidence 5888 888899999999999999999987542 89999995 8999999999999999997
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCC--------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHH
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSS--------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAI 157 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~--------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l 157 (758)
.|+|.++.+++++++|+.|..+.+. .+.+...|+.||++|++++||+|+++|+||+++
T Consensus 78 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 157 (210)
T 1v2a_A 78 DDTLYPKDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAADHLTVADICL 157 (210)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCcccCCCCCHHHHHH
Confidence 3999999999999999987654332 146788999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHh-hccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA-EYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~-~~~p~~~~~l~~ 201 (758)
++.+.++... +.. ...+|+|.+|+++|.+ + |++++++..
T Consensus 158 ~~~l~~~~~~--~~~-~~~~p~l~~w~~~~~~~~--p~~~~~~~~ 197 (210)
T 1v2a_A 158 LGTVTALNWL--KHD-LEPFPHIRAWLERVRAEM--PDYEEFSKQ 197 (210)
T ss_dssp HHHHHGGGTT--TCC-CTTCHHHHHHHHHHHTTS--TTHHHHHHH
T ss_pred HHHHHHHHhc--CCC-hhhCchHHHHHHHHHHHC--ccHHHHhHH
Confidence 9999986322 233 5789999999999998 8 999987654
|
| >2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=197.31 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=131.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 3 ~~Ly--~~~-~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~ 78 (207)
T 2x64_A 3 MKLY--IMP-GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQV-GDWVLTQNAAILNYITDIAPAE 78 (207)
T ss_dssp EEEE--ECT-TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEEE-TTEEECCHHHHHHHHHHHSCGG
T ss_pred EEEE--cCC-CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEeE-CCEEEeeHHHHHHHHHHhCCch
Confidence 6888 665 56799999999999999987532 99999995 8999999999999999998
Q ss_pred -CCCCC-CHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCC
Q 043341 100 -NFYGQ-NAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLS 151 (758)
Q Consensus 100 -~L~p~-~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lT 151 (758)
.|+|. ++.+++++++|+.++.+.+.+ +.+...|+.||++|++++||+|+++|
T Consensus 79 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 158 (207)
T 2x64_A 79 RGLSGDGSLKARAEINRWIAFSNSDVHPMYWALFGGTAYLQDPQMIARSQDNARQKLRVLYQRADAHLKHHNWLANGQRS 158 (207)
T ss_dssp GCSSTTSSHHHHHHHHHHHHHHHHTHHHHTGGGGTTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSSTTSCC
T ss_pred hccCCCCCcHHHHHHHHHHHHHHhccHHHHHHHhCccccCCchhhhHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCcc
Confidence 69998 999999999999887543211 34677899999999999999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+++++.+.++.. .+.. ...+|+|.+|+++|.++ |++++++.+
T Consensus 159 ~ADi~~~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 203 (207)
T 2x64_A 159 GADAYLYVTLRWAKK--VGVD-LSSLDALSAFFERMEAD--PGVQAALQA 203 (207)
T ss_dssp HHHHHHHHHHHHHHH--HTCC-CTTCHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCC-hhhCHHHHHHHHHHHcC--HHHHHHHHh
Confidence 999999999998632 2333 57899999999999999 999998765
|
| >3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=205.99 Aligned_cols=160 Identities=12% Similarity=0.111 Sum_probs=133.5
Q ss_pred ceeEEEecccC-CCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTMEIKVLSFP-ADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~L~~l~~~-~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|+|| |++ .++++++||++|+++|++|+.+.+ .+||+|++ ||.+|+||.||++||++
T Consensus 20 m~~~L~--y~~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~kVPvL~d-~g~~l~ES~AI~~YL~~ 96 (252)
T 3h1n_A 20 MAYDLW--YWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPFAPPYLVA-DGMTIAQTANILLFLGV 96 (252)
T ss_dssp GCEEEE--CCSSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCSSSCEEEE-TTEEEESHHHHHHHHHH
T ss_pred CceEEE--eCCCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCCCCCEEEE-CCEEeecHHHHHHHHHH
Confidence 779999 887 599999999999999999997633 16999996 89999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccc--------------c--CCh--------------HHHHHHHHHHHHhccc--CCcc
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPV--------------F--SSG--------------SEFENACTYVDKYLER--RTFV 145 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~--------------~--l~~--------------~~l~~~L~~Le~~L~~--~~fl 145 (758)
+++|+|.++.+++++++|+.+... . +.. +.+.+.|+.||++|+. ++|+
T Consensus 97 ~~~L~p~~~~~ra~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lE~~L~~~~~~fl 176 (252)
T 3h1n_A 97 EHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLT 176 (252)
T ss_dssp HHSSSCSSHHHHHHHHHHHHHHHHHHHHHHHTTCSSCTTSCGGGGHHHHHHHHHHHHHTHHHHHHHHHHHHTCSTTSSSS
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 999999999999999999875421 0 000 2366788999999987 7999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccc--cccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSL--RKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~--~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+++|+|||++++.+.++....... ...+.||+|.+|+++|.++ |++++++++
T Consensus 177 ~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~~r--P~~~~~l~~ 232 (252)
T 3h1n_A 177 DMGRWSYADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAEL--PELRGYLAS 232 (252)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHHCHHHHHHHGGGCHHHHHHHHHHHTC--HHHHHHHTS
T ss_pred cCCCccHHHHHHHHHHHHHHHhCcccchhhhhcChHHHHHHHHHHcC--HHHHHHHhC
Confidence 99999999999999999873322111 2257899999999999999 999998765
|
| >2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=200.05 Aligned_cols=155 Identities=8% Similarity=0.077 Sum_probs=133.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|+ +||.+|+||.+|++||++++
T Consensus 3 ~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 79 (214)
T 2v6k_A 3 MKLY--NFWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALD-TGAQVLIQSPAIIEWLEEQYP 79 (214)
T ss_dssp CEEE--ECSSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEE-CSSCEEECHHHHHHHHHHHSC
T ss_pred eEEE--ecCCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEEE-ECCEEEecHHHHHHHHHHhCC
Confidence 6898 888899999999999999999988532 8999996 58999999999999999998
Q ss_pred --CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhccc----CCcccC
Q 043341 100 --NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLER----RTFVVG 147 (758)
Q Consensus 100 --~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~----~~flvG 147 (758)
.|+|.++.+++++++|+.++.+.+.+ +.+...|+.||++|+. ++||+|
T Consensus 80 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G 159 (214)
T 2v6k_A 80 TPALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADEAAINAWCGTWISAGFDAYEALLAVDPKRGRYSFG 159 (214)
T ss_dssp SSCSSCSSHHHHHHHHHHHHHHHHHTGGGGSHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSSSST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCC
Confidence 79999999999999999987643221 3466788999999987 499999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++|+||+++++.+.++.. .+.. ...+|+|.+|+++|.++ |+|++++..
T Consensus 160 ~~~t~ADi~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~ 208 (214)
T 2v6k_A 160 DTPTLADCYLVPQVESARR--FQVD-LTPYPLIRAVDAACGEL--DAFRRAAPA 208 (214)
T ss_dssp TSCCHHHHHHHHHHHHHHH--TTCC-CTTCHHHHHHHHHHTTS--HHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHHHHH--cCCC-hhhChhHHHHHHHHHcC--HHHHhhCcc
Confidence 9999999999999988632 2233 47899999999999999 999998754
|
| >1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=200.79 Aligned_cols=157 Identities=13% Similarity=0.232 Sum_probs=134.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++++
T Consensus 3 ~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 79 (216)
T 1aw9_A 3 LKLY--GMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVD-GDEVLFESRAINRYIASKYA 79 (216)
T ss_dssp EEEE--SCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEE-TTEEEESHHHHHHHHHHHTC
T ss_pred eEEE--ecCCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEEE-CCEEeeCHHHHHHHHHHHcC
Confidence 7999 888899999999999999999987532 99999998 88999999999999999982
Q ss_pred -----CCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcccC
Q 043341 101 -----FYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFVVG 147 (758)
Q Consensus 101 -----L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~flvG 147 (758)
|+ .++.+++++++|+.|..+.+.+ +.+...|+.||++|++++||+|
T Consensus 80 ~~~~~L~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 158 (216)
T 1aw9_A 80 SEGTDLL-PATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAG 158 (216)
T ss_dssp SSSSCSS-CTTSCHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTB
T ss_pred CCCCccc-cCHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhchhhcCCCCHHHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 88 8889999999999886543321 4567789999999999999999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++|+||+++++.+.++... ........+|+|.+|+++|.++ |++++++++.
T Consensus 159 ~~~t~ADi~~~~~l~~~~~~-~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 210 (216)
T 1aw9_A 159 DEFTLADANHASYLLYLSKT-PKAGLVAARPHVKAWWEAIVAR--PAFQKTVAAI 210 (216)
T ss_dssp SSCCHHHHTTHHHHHHHHTS-TTTHHHHTSHHHHHHHHHHHHS--HHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhc-CccchhhhChHHHHHHHHHHcC--hHHHHHhccc
Confidence 99999999999999986331 1112357899999999999999 9999998764
|
| >2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=200.92 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=133.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeee-----------c---------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTET-----------S---------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~-----------~---------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| ++..|+++++|+++|+++|++|+.+. . |+||+|++ ||.+|+||.+|++||+++
T Consensus 13 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 89 (223)
T 2cz2_A 13 PILY--SYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKI-DGITIVQSLAIMEYLEET 89 (223)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHH
T ss_pred eEEE--ecCCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEE-CCEEEeeHHHHHHHHHHh
Confidence 7898 88889999999999999999988631 1 99999996 899999999999999999
Q ss_pred C---CCCCCCHHHHHHHHHHHHhccccCCh--------------------HHHHHHHHHHHHhccc--CCcccCCCCCHh
Q 043341 99 G---NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------SEFENACTYVDKYLER--RTFVVGHSLSIV 153 (758)
Q Consensus 99 ~---~L~p~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L~~Le~~L~~--~~flvG~~lTlA 153 (758)
+ .|+|.++.+++++++|+.++...+.+ +.+...|+.||++|+. ++||+|+++|+|
T Consensus 90 ~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~A 169 (223)
T 2cz2_A 90 RPIPRLLPQDPQKRAIVRMISDLIASGIQPLQNLSVLKQVGQENQMQWAQKVITSGFNALEKILQSTAGKYCVGDEVSMA 169 (223)
T ss_dssp SCSSCSSCSSHHHHHHHHHHHHHHHHHTGGGGSHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHBSSSSSBTSCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhccCccchhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHH
Confidence 8 79999999999999999887544321 3467889999999998 899999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
||++++.+.++.. .+.. ...||+|.+|+++|.++ |+|++++.+.
T Consensus 170 Di~l~~~l~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 213 (223)
T 2cz2_A 170 DVCLVPQVANAER--FKVD-LSPYPTISHINKELLAL--EVFQVSHPRR 213 (223)
T ss_dssp HHHHHHHHHHHHH--TTCC-CTTCHHHHHHHHHHHTS--HHHHTTCGGG
T ss_pred HHHHHHHHHHHHH--hCCC-hhhChHHHHHHHHHhcC--hHHHHhCcCC
Confidence 9999999987632 2222 47899999999999999 9998876553
|
| >1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=198.26 Aligned_cols=159 Identities=14% Similarity=0.226 Sum_probs=135.4
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeee------------------c---CCccEEEeCCCcEEechHHHHHH
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTET------------------S---GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~------------------~---g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
|+ |+|| +++.|+++++++++|+++|++|+.+. . |+||+|++ ||.+|+||.+|++|
T Consensus 2 m~~~~Ly--~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~y 78 (211)
T 1okt_A 2 GDNIVLY--YFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQI-GDLILAQSQAIVRY 78 (211)
T ss_dssp CCCEEEE--EESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEE-TTEEEECHHHHHHH
T ss_pred CCccEEE--EECCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEEE-CCEEeehHHHHHHH
Confidence 55 7999 88889999999999999999987631 3 78999996 89999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhccccC---------C-------hHHHHHHHHHHHHhcccC--C------cccCCCC
Q 043341 95 IGRVGNFYGQNAYEAGEIDEWLDYTPVFS---------S-------GSEFENACTYVDKYLERR--T------FVVGHSL 150 (758)
Q Consensus 95 L~~~~~L~p~~~~era~v~~wl~~~~~~l---------~-------~~~l~~~L~~Le~~L~~~--~------flvG~~l 150 (758)
|+++++|+|.++.+++++++|+.++.+.+ . .+.+...|+.||++|+.+ + ||+|+++
T Consensus 79 L~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~~~~~l~G~~~ 158 (211)
T 1okt_A 79 LSKKYNICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNL 158 (211)
T ss_dssp HHHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHTHHHHHHHHHHHHHHHTCSSCCTTCCCSSTTSC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCcccCcccccCCCC
Confidence 99999999999999999999998765311 0 135778899999999887 5 9999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+|||++++.+.++..... .....+|+|.+|+++|.++ |++++++++-
T Consensus 159 t~ADi~l~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 206 (211)
T 1okt_A 159 TYADLAVFNLYDDIETKYP--SSLKNFPLLKAHNEFISNL--PNIKNYITNR 206 (211)
T ss_dssp CHHHHHHHHHHHHHHTTSC--CTTTTCHHHHHHHHHHHTS--HHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhCc--cccccChHHHHHHHHHHhC--HHHHHHHHcC
Confidence 9999999999998633221 2357899999999999999 9999998753
|
| >2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-22 Score=199.58 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=133.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |+||+|+ +||.+|+||.||++||++++
T Consensus 2 ~~L~--y~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~YL~~~~ 78 (216)
T 2fhe_A 2 AKLG--YWKIRGLQQPVRLLLEYLGEKYEEQIYERDDGEKWFSKKFELGLDLPNLPYYI-DDKCKLTQSLAILRYIADKH 78 (216)
T ss_dssp EEEE--EESSSTTTHHHHHHHHHTTCCEEEEEECTTCHHHHHHHTTTSCCSSCCSSEEE-CSSCEEESHHHHHHHHHHHT
T ss_pred cEEE--EcCCCchhHHHHHHHHHcCCCceEEeeCCCchhhhhccccccCCCCCCCCEEE-ECCEEEEeHHHHHHHHHHHc
Confidence 6898 888999999999999999999987432 6899998 58999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+|.++.+++++++|+.+...... .+.+...|+.||++|++++||+|+++|+||+++++.+
T Consensus 79 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l 158 (216)
T 2fhe_A 79 GMIGTTSEERARVSMIEGAAVDLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEAL 158 (216)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhCcCCcccCCCCCHHHHHHHHHH
Confidence 9999999999999999886543210 1457778999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.++... +......+|+|.+|+++|.++ |++++++.+
T Consensus 159 ~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 194 (216)
T 2fhe_A 159 DAIRYL--EPHCLDHFPNLQQFMSRIEAL--PSIKAYMES 194 (216)
T ss_dssp HHHHHH--CTTTTTTCHHHHHHHHHHHTS--HHHHHHHTS
T ss_pred HHHHHh--ChHhhhcCchHHHHHHHHHhC--hHHHHHHhc
Confidence 986322 222357899999999999999 999998765
|
| >1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=202.99 Aligned_cols=161 Identities=18% Similarity=0.251 Sum_probs=136.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|.|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++
T Consensus 1 m~~~Ly--~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d-~g~~l~eS~aI~~YL~~~ 77 (244)
T 1ljr_A 1 MGLELF--LDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKD-GDFILTESSAILIYLSCK 77 (244)
T ss_dssp CCCEEE--ECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEE-TTEEEECHHHHHHHHHHH
T ss_pred CeEEEE--ecCCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEEE-CCEEEEchHHHHHHHHHh
Confidence 558999 888999999999999999999987432 99999995 899999999999999999
Q ss_pred C----CCCCCCHHHHHHHHHHHHhccccCC---------------------h-------HHHHHHHHHHHHh-cccCCcc
Q 043341 99 G----NFYGQNAYEAGEIDEWLDYTPVFSS---------------------G-------SEFENACTYVDKY-LERRTFV 145 (758)
Q Consensus 99 ~----~L~p~~~~era~v~~wl~~~~~~l~---------------------~-------~~l~~~L~~Le~~-L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.|..+.+. . +.+...|+.||++ |++++||
T Consensus 78 ~~~~~~L~p~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ll~~~~fl 157 (244)
T 1ljr_A 78 YQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFL 157 (244)
T ss_dssp TTCCGGGSCCSHHHHHHHHHHHHHHHHHTTTTSSHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSSBT
T ss_pred cCCCccCCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCcEe
Confidence 8 4899999999999999988654321 0 3567789999986 7788999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccc-hHHHHHHhh
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSD-SLDEVTATY 202 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p-~~~~~l~~~ 202 (758)
+|+++|+||+++++.+.++.. .+......+|+|.+|+++|.+++.| +++++++..
T Consensus 158 ~Gd~~T~ADi~l~~~l~~~~~--~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~~ 213 (244)
T 1ljr_A 158 AGQQVTLADLMALEELMQPVA--LGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSII 213 (244)
T ss_dssp TBSSCCHHHHHHHHHHHHHHH--TTCCTTTTCHHHHHHHHHHHHHHCHHHHHHHHTHH
T ss_pred cCCCCCHHHHHHHHHHHHHHh--cCCcccccCHHHHHHHHHHHhhhCchhHHHHHHHH
Confidence 999999999999999987632 2333357899999999999998667 899887754
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=233.73 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=171.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP------------------------------- 293 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~------------------------------- 293 (758)
+|.=-.|||||++||||+|++++.+.+|| +|...++-.|.|.+.
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~ 185 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYV 185 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHH
Confidence 44555799999999999999999999998 344555555666531
Q ss_pred ---------------------------ccchHHHHHHHHHHHHHhCCCCCCcccccCC--HHHHHHHHHHHHHhCceecc
Q 043341 294 ---------------------------AKESNEFVDNLLKDIETLGIKYETVTYTSDY--FPDLMEMAENLIRQGKAYVD 344 (758)
Q Consensus 294 ---------------------------~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~--~~~~~~~~~~Li~~G~aY~~ 344 (758)
++..+.+.+.|.+++++|||.+|.+.++|++ .+.+.+++++|.++|++|.|
T Consensus 186 ~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~ 265 (592)
T 1iq0_A 186 RLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRP 265 (592)
T ss_dssp HHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECC
T ss_pred HHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccC
Confidence 1223456788999999999999988889988 77899999999999999965
Q ss_pred CCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-----
Q 043341 345 DTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI----- 419 (758)
Q Consensus 345 ~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~----- 419 (758)
.. |.. . +.+.++++.......+.+.|+.|++|++.+.+
T Consensus 266 ~~----------------------------------g~~-~--G~~~~~~~~~g~~~~l~~~vi~ksdG~~~Y~~~D~a~ 308 (592)
T 1iq0_A 266 RE----------------------------------GKY-A--GALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAF 308 (592)
T ss_dssp SS----------------------------------STT-T--TCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHH
T ss_pred cc----------------------------------cCc-C--CCEEEechhcCCCCCCCceEEEecCCceEEecchHHH
Confidence 21 101 1 12233332211112233478888887643221
Q ss_pred -----------------CCcccccccccccccccccccCccEE--eeCCCCCCchHHHHHHHHHhCCCc-c-eEeee--e
Q 043341 420 -----------------GSKYKVYPTYDFACPFVDAKEGITHA--LRSSEYHDRNAQYYRIQEDLGVRK-V-HIYEF--S 476 (758)
Q Consensus 420 -----------------~~~~~~~PtY~~a~~vdD~~~githv--irg~d~~~~~~~~~~l~~alg~~~-p-~~~~~--~ 476 (758)
.++| +.|.||..|+.. ...+.+|+ |.|.+|..+.+++..+++++|++. + ...|+ +
T Consensus 309 ~~~Kl~l~~~~~~~~~~~~p~-~r~~w~~~g~~~-~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g 386 (592)
T 1iq0_A 309 QFWKMGILEGLRFRPYENPYY-PGLRTSAPEGEA-YTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYE 386 (592)
T ss_dssp HHHHTTSSCCCEEEECCCSSC-TTCEEEEEEEEE-CCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEEC
T ss_pred HHHHhhhhhhhhhhhhhcCcc-hhhcccccCccc-CCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEee
Confidence 2223 456665444332 12367777 689999999999999999999975 3 33344 4
Q ss_pred eeecccccccchhh-----hhhhhcCc----------cCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 477 RLNMVYTLLSKRKL-----LWFVQNGK----------VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 477 ~l~~~~~klSKR~~-----~~li~~g~----------~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
++++.|.|||||++ .+|+++|+ -++|+++. . +.+. +.++++|+|+++. .++++.+|||
T Consensus 387 ~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e--~---~a~~-vg~~aiRyf~L~~-~~~~~~~Fd~ 459 (592)
T 1iq0_A 387 TVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKE--E---AARM-VALGAIRFSMVKT-EPKKQIDFRY 459 (592)
T ss_dssp CEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHH--H---HHHH-HHHHHHHHHHHHS-CTTSCEEECH
T ss_pred EEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHH--H---HHHh-hcHHHHHHHHHhc-CCCCCCeecH
Confidence 59999999999984 44444422 11333221 1 1111 7889999999996 7899999999
Q ss_pred HHHHHHHH
Q 043341 542 DKLWTINK 549 (758)
Q Consensus 542 ~~l~~~n~ 549 (758)
+++.+.|+
T Consensus 460 d~~~~~~~ 467 (592)
T 1iq0_A 460 QEALSFEG 467 (592)
T ss_dssp HHHHCSSS
T ss_pred HHHHHHhc
Confidence 99998876
|
| >3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=212.17 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=146.9
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
.|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 3 ~~~Ly--~~~~sp~~~kvr~~L~~~gi~ye~~~v~~~~~~~~~~~~n~P~g~vPvL~~-~g~~l~eS~aI~~yL~~~~~~ 79 (310)
T 3ic8_A 3 ELILH--HYPTSLFAEKARLMLGFKGVNWRSVTIPSIMPKPDLTALTGGYRKTPVLQI-GADIYCDTALMARRLEQEKAS 79 (310)
T ss_dssp CEEEE--ECTTCGGGHHHHHHHHHHTCEEEEEECCSSSCCHHHHHHHSSCCCSCEEEE-TTEEECSHHHHHHHHHHHCCS
T ss_pred eEEEE--ecCCCcHHHHHHHHHHhcCCCcEEEEcCCCCCcHHHHHhcCCCCceeEEEE-CCEEEcCHHHHHHHHHHhCCC
Confidence 38999 999999999999999999999997542 89999996 8999999999999999999
Q ss_pred -CCCCCCH-HHHHHHHHH----HHhccccCC------------------------------------------hHHHHHH
Q 043341 100 -NFYGQNA-YEAGEIDEW----LDYTPVFSS------------------------------------------GSEFENA 131 (758)
Q Consensus 100 -~L~p~~~-~era~v~~w----l~~~~~~l~------------------------------------------~~~l~~~ 131 (758)
.|+|.++ .+++++.+| +.+....+. .+.+...
T Consensus 80 ~~L~p~~~~~~~~~~~~w~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 159 (310)
T 3ic8_A 80 PAFYPQGQEFAVAGLAAWADSVLFLHAVSLVFQPESMAVRFAKVPPDAAKAFIADRSMLFNGGTASRPPVEQVKHQWPTF 159 (310)
T ss_dssp SCSSCTTCHHHHHHHHHHHHHHHHHHHHHHHSSGGGC-------------------------------CHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHhhhhHHHHHHHhcchhhhhhhhccCChhhhHHHHHHHHHHhCCCCccccCHHHHHHHHHHH
Confidence 5999884 889999999 555432110 1467888
Q ss_pred HHHHHHhcc-cCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhhcccCCCC
Q 043341 132 CTYVDKYLE-RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGK 210 (758)
Q Consensus 132 L~~Le~~L~-~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~~~~~~~ 210 (758)
|+.||++|+ +++||+| ++|+|||++|+.+.++............||+|.+|+++|.++ +..+ ... .
T Consensus 160 L~~Le~~L~~~~~fl~G-~~T~ADi~l~~~l~~~~~~~~~~~~~~~~P~l~~w~~r~~~~--~~~~-------~~~---~ 226 (310)
T 3ic8_A 160 MSRLESQLSHGGDFLFG-APSIADFSVAHTLWFLKQTPVTAPFVDDYPSVSVWLDRVLGF--GHGS-------LSD---L 226 (310)
T ss_dssp HHHHHHHHTTCCSBTTB-SCCHHHHHHHHHHHHHHTCTTTTHHHHTSHHHHHHHHHHHTT--CCCE-------EEE---C
T ss_pred HHHHHHHHhcCCCcccC-CCcHHHHHHHHHHHHHhcCccchhhhhhChhHHHHHHHHHHh--cCCC-------ccc---C
Confidence 999999999 9999999 999999999999987532112222367899999999999998 5310 000 0
Q ss_pred CcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeeccCCCCCCCc
Q 043341 211 PTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYL 262 (758)
Q Consensus 211 ~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~RfaP~PtG~l 262 (758)
..+.+. +.++++. + ...++.+..++++.+.|++|+|||= =||.-
T Consensus 227 ~~~~a~--~~~~~~~-~----~~~~~~~~~d~~g~~~G~~V~v~p~-d~g~~ 270 (310)
T 3ic8_A 227 SSAAAI--EIASNAT-P----APLPDETFIDPNGFKAGDKVAIAAV-DYGVE 270 (310)
T ss_dssp CHHHHH--HHHHHSC-C----CCCCCCCCCCTTCCCTTCEEEEEES-SCGGG
T ss_pred CHHHHH--HHHhcCC-C----CCCCcccccccccCCCCCEEEEeec-cCCCC
Confidence 000000 0000000 0 1111245567888889999999965 46653
|
| >1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=199.94 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=134.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |+||+|+ +||.+|+||.||++||++++
T Consensus 2 ~~L~--y~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~YL~~~~ 78 (234)
T 1dug_A 2 PILG--YWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKH 78 (234)
T ss_dssp CEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEE-CSSCEEESHHHHHHHHHHHT
T ss_pred cEEE--EcCCCCchHHHHHHHHHcCCCceEEEeCCCchhhHhhhccccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHc
Confidence 6888 899999999999999999999986422 6899998 58999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+|.++.+++++++|+.++..... .+.+...|+.||++|++++||+|+++|+|||++++.+
T Consensus 79 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~G~~~T~ADi~l~~~l 158 (234)
T 1dug_A 79 NMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDAL 158 (234)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHccCCeecCCCCCHHHHHHHHHH
Confidence 9999999999999999886543210 1346788999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.++... +......||+|.+|+++|.++ |++++++.+-
T Consensus 159 ~~~~~~--~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~~ 195 (234)
T 1dug_A 159 DVVLYM--DPMCLDAFPKLVCFKKRIEAI--PQIDKYLKSS 195 (234)
T ss_dssp HHHHHH--CTTTTTTCHHHHHHHHHHHHS--HHHHHHHTST
T ss_pred HHHHHh--ChhhhhcCcHHHHHHHHHHcC--HHHHHHHhCC
Confidence 986322 222357899999999999999 9999998764
|
| >1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=201.72 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=134.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC-C-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-N- 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~- 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++ .
T Consensus 7 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~ 83 (230)
T 1gwc_A 7 LKLL--GAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVLIH-NGAPVCESMIILQYIDEVFAST 83 (230)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEEE-TTEEEESHHHHHHHHHHHTTTS
T ss_pred EEEE--eCCCChHHHHHHHHHHHcCCCCeEEecccccCCHHHHhhCCCCCccCEEEE-CCEEeecHHHHHHHHHHhcCCC
Confidence 7999 888999999999999999999988542 69999986 8999999999999999998 3
Q ss_pred ---CCCCCHHHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcc----cCCcccCCCCCHhHH
Q 043341 101 ---FYGQNAYEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLE----RRTFVVGHSLSIVDI 155 (758)
Q Consensus 101 ---L~p~~~~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~----~~~flvG~~lTlADi 155 (758)
|+|.++.+++++++|+.+..+.+.+ +.+...|+.||++|+ +++||+|+++|+||+
T Consensus 84 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~fl~G~~~t~ADi 163 (230)
T 1gwc_A 84 GPSLLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDV 163 (230)
T ss_dssp SCCSSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCBTTBTSCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeCCCCCCHHHH
Confidence 9999999999999999998775431 456778999999999 889999999999999
Q ss_pred HHHHHHhhhhcc--ccccc--ccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 156 AIWSALAGTGQR--WDSLR--KSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 156 ~l~~~L~~l~~~--~~~~~--~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++++.+.++... ..+.. ....+|+|.+|+++|.++ |++++++..
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 211 (230)
T 1gwc_A 164 ALGGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIEL--DAAKAALPD 211 (230)
T ss_dssp HHHTTHHHHHHHHHHHSCCTTCTTTCHHHHHHHHHHHHS--HHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcCCCcCChhhCHHHHHHHHHHhcC--chhhhccCC
Confidence 999999876321 01211 246899999999999999 999987543
|
| >3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=196.41 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=130.5
Q ss_pred eEEEecccC--CCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFP--ADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~--~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++ .|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||+++
T Consensus 7 ~~Ly--~~~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 83 (215)
T 3bby_A 7 ITLW--SDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQI-DDFELSESSAIAEYLEDR 83 (215)
T ss_dssp EEEE--EETTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEEE-TTEEEESHHHHHHHHHHH
T ss_pred EEEE--ecCCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEEe-CCeEeecHHHHHHHHHHh
Confidence 7898 776 799999999999999999987432 99999997 889999999999999999
Q ss_pred C---C---CCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhccc-CCcccC
Q 043341 99 G---N---FYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLER-RTFVVG 147 (758)
Q Consensus 99 ~---~---L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~-~~flvG 147 (758)
+ . |+|.++.+++++++|+.|+.+.+.+ +.+...|+.||++|+. ++|++|
T Consensus 84 ~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G 163 (215)
T 3bby_A 84 FAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFG 163 (215)
T ss_dssp SCTTTSCCCSCSSHHHHHHHHHHHHHHHHSCHHHHHHSCTHHHHSCCCCCCCCHHHHHHHHHHHHHHHHHTTTCCSSTTS
T ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHHHhhHHHHHhhccchhhccccCCccccHHHHHHHHHHHHHHHHHHccCCCeeeC
Confidence 8 3 9999999999999999887643321 4678889999999986 899999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+ +|+|||++++.+.++... + ...+|+|.+|+++|.++ |++++++++-
T Consensus 164 ~-~t~ADi~l~~~l~~~~~~--~---~~~~p~l~~~~~~~~~r--p~~~~~~~~~ 210 (215)
T 3bby_A 164 E-WCIADTDLALMINRLVLH--G---DEVPERLVDYATFQWQR--ASVQRFIALS 210 (215)
T ss_dssp S-CCHHHHHHHHHHHHHHTT--T---CCCCHHHHHHHHHHHTC--HHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHHHhC--HHHHHHHHHh
Confidence 8 999999999999986322 2 23469999999999999 9999998764
|
| >1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=198.28 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=133.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
|+|| +++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++|
T Consensus 2 ~~L~--~~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d-~g~~l~eS~aI~~y 78 (219)
T 1gsu_A 2 VTLG--YWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLID-GDVKLTQSNAILRY 78 (219)
T ss_dssp EEEE--EESSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEE-TTEEEESHHHHHHH
T ss_pred cEEE--EeCCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEE-CCEEEecHHHHHHH
Confidence 6888 888899999999999999999986321 58999995 89999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 95 IGRVGNFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 95 L~~~~~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|+++++|+|.++.+++++++|+.+...... .+.+...|+.||++|++++||+|+++|+||++
T Consensus 79 L~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 158 (219)
T 1gsu_A 79 IARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFL 158 (219)
T ss_dssp HHHTTTCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhccCCEecCCCCCHHHHH
Confidence 999999999999999999999886543210 14567789999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.++... +......+|+|.+|+++|.++ |++++++.+
T Consensus 159 l~~~l~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 199 (219)
T 1gsu_A 159 AYDVLDQQRMF--VPDCPELQGNLSQFLQRFEAL--EKISAYMRS 199 (219)
T ss_dssp HHHHHHHHHHH--STTCGGGSSHHHHHHHHHHTS--HHHHHHHTS
T ss_pred HHHHHHHHHHh--ChhhhhhchHHHHHHHHHHcC--HHHHHHHhc
Confidence 99999986322 222357899999999999999 999998765
|
| >1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=195.11 Aligned_cols=152 Identities=18% Similarity=0.321 Sum_probs=130.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 1 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 77 (209)
T 1pn9_A 1 MDFY--YLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVD-NGFALWESRAIQIYLAEKYG 77 (209)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEEE-TTEEEESHHHHHHHHHHHHC
T ss_pred CeEE--eCCCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEEE-CCEEEEeHHHHHHHHHHhCC
Confidence 5888 888899999999999999999987432 99999996 8999999999999999997
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCC---------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHH
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSS---------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDI 155 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~---------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi 155 (758)
.|+|.++.+++++++|+.+..+.+. .+.+...|+.||++|++++||+|+++|+||+
T Consensus 78 ~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 157 (209)
T 1pn9_A 78 KDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGFLNTFLEGQEYAAGNDLTIADL 157 (209)
T ss_dssp CCTTSSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCceecCCCCCHHHH
Confidence 3899999999999999987654322 1457788999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHh-hccchHHHH
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA-EYSDSLDEV 198 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~-~~~p~~~~~ 198 (758)
++++.+.++... +.. ...+|+|.+|+++|.+ + |+++..
T Consensus 158 ~~~~~l~~~~~~--~~~-~~~~p~l~~w~~~~~~r~--p~~~~~ 196 (209)
T 1pn9_A 158 SLAATIATYEVA--GFD-FAPYPNVAAWFARCKANA--PGYALN 196 (209)
T ss_dssp HHHHHHHHHHHH--TCC-CTTCHHHHHHHHHHHHHS--TTHHHH
T ss_pred HHHHHHHHHHhc--CCC-hhhChhHHHHHHHHHHhC--cchhhh
Confidence 999999986322 233 5789999999999999 7 888643
|
| >1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=204.77 Aligned_cols=158 Identities=12% Similarity=0.149 Sum_probs=130.5
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeC--CCcEEechHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFS--NGSKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~--~g~~l~ES~aIl~yL~ 96 (758)
|.|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++ ||.+|+||.||++||+
T Consensus 18 ~~~~Ly--~~~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~YL~ 95 (260)
T 1k0d_A 18 EGYTLF--SHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLV 95 (260)
T ss_dssp SSEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHH
T ss_pred CcEEEE--cCCCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHHHHHH
Confidence 448999 888999999999999999999987432 899999985 7899999999999999
Q ss_pred HhC-------CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhccc----
Q 043341 97 RVG-------NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLER---- 141 (758)
Q Consensus 97 ~~~-------~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~---- 141 (758)
+++ .|+|.++.+++++++|+.|..+.+.+ +.+.+.+..||.+|+.
T Consensus 96 ~~~~~~~~~~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 175 (260)
T 1k0d_A 96 NKYYKETGNPLLWSDDLADQSQINAWLFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREA 175 (260)
T ss_dssp HHHHHHHSCCTTSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccccCCCcCCCCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 986 48999999999999999887653321 2445567778877753
Q ss_pred ----------------------------CCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccc
Q 043341 142 ----------------------------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSD 193 (758)
Q Consensus 142 ----------------------------~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p 193 (758)
++||+|+++|+|||++++.+.++.. .+......+|+|.+|+++|.++ |
T Consensus 176 ~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~l~G~~~T~ADi~l~~~l~~~~~--~~~~~~~~~p~l~~w~~~i~~r--p 251 (260)
T 1k0d_A 176 LVMELDTENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDR--IGINIKIEFPEVYKWTKHMMRR--P 251 (260)
T ss_dssp HHC----------------------CCCCCCSSTTSCCHHHHTTHHHHTTGGG--GTCCHHHHCHHHHHHHHHHHTC--H
T ss_pred hhhhcchhhhhhhhhhhhhhhhhccccCCCcccCCCCCHHHHHHHHHHHHHHh--cCCCccccChHHHHHHHHHHcC--H
Confidence 3899999999999999999987632 2333346799999999999999 9
Q ss_pred hHHHHHH
Q 043341 194 SLDEVTA 200 (758)
Q Consensus 194 ~~~~~l~ 200 (758)
+|++++.
T Consensus 252 ~~~~~~~ 258 (260)
T 1k0d_A 252 AVIKALR 258 (260)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9998754
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=221.99 Aligned_cols=267 Identities=13% Similarity=0.107 Sum_probs=181.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++--+|+|||++||||+|++++.+.+|| .+.|..++++.++| +....+++.+.|.++|++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999999999 56899999998887 5556678899999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceeccC-----Cch-HHHHHHhcCCCCCcCC--CCCHHHHHHHHHHHhcC
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYVDD-----TPR-EQMQKERMDGIESKCR--NNSIEENMKLWKEMIAG 381 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~~~-----~~~-e~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~g 381 (758)
|+.+|..+++++ |.+.+++++++|.++|++|.+. |.. +.+-.... -..+.|. +.+++.
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~-l~~g~c~~~~~~v~~----------- 153 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE-LVEGLCPIHGRPVER----------- 153 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT-SBTTBCTTTCSBCEE-----------
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchh-ccCCcCCCCCCeeeE-----------
Confidence 999998888888 8999999999999999999431 100 00000000 0112232 111110
Q ss_pred ccCCceeeEEeeecC-------------C--CC-----------CCCCCCcEEEE--eCCCCCcccCCcccc-----c--
Q 043341 382 SERGLECCLRGKLDM-------------Q--DP-----------NKSLRDPVYYR--CNPIPHHRIGSKYKV-----Y-- 426 (758)
Q Consensus 382 ~~~~~~~~~R~k~~~-------------~--~~-----------~~~~~D~vl~R--~~~~~~~~~~~~~~~-----~-- 426 (758)
-....+.+|++. . .+ ...++|+++.| .+. .||.+..+ .
T Consensus 154 ---~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~----~WG~piP~~~~~v~~v 226 (500)
T 2d5b_A 154 ---RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRV----PWGIPLPWDENHVTFV 226 (500)
T ss_dssp ---EEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTC----CSSCEETTEEEEEECH
T ss_pred ---EecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccc----cCccccCCCCCCeeEE
Confidence 001111122110 0 00 12468999999 331 14432210 0
Q ss_pred -----------ccccccccccccccCccEEeeCCCCCC-chHHHHHHHHHhCCCcce-Eeeeeeeec-ccccccchhhhh
Q 043341 427 -----------PTYDFACPFVDAKEGITHALRSSEYHD-RNAQYYRIQEDLGVRKVH-IYEFSRLNM-VYTLLSKRKLLW 492 (758)
Q Consensus 427 -----------PtY~~a~~vdD~~~githvirg~d~~~-~~~~~~~l~~alg~~~p~-~~~~~~l~~-~~~klSKR~~~~ 492 (758)
-.|+..|..+++. +.+..+.|.||+. |......++.++|++.|. +++++++.. +|+|||||+++
T Consensus 227 Wfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN- 304 (500)
T 2d5b_A 227 WFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN- 304 (500)
T ss_dssp HHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC-
T ss_pred ccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC-
Confidence 0355444333332 4566677999874 333333456778998776 556699999 89999999973
Q ss_pred hhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhc
Q 043341 493 FVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKII 552 (758)
Q Consensus 493 li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l 552 (758)
..++.++++. ++++++|.|+++.+...++.+|+++.+....+..|
T Consensus 305 --------------~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l 349 (500)
T 2d5b_A 305 --------------VVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADL 349 (500)
T ss_dssp --------------CCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHC
T ss_pred --------------CCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHH
Confidence 4477888887 99999999999877999999999999988654433
|
| >1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=199.50 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=134.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++++
T Consensus 7 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~ 83 (231)
T 1oyj_A 7 LVLL--DFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLH-AGRPVSESLVILQYLDDAFPGT 83 (231)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEEE-TTEEEESHHHHHHHHHHHCTTS
T ss_pred eEEE--eCCCChHHHHHHHHHHHCCCCCeEEecCcccCCHHHHhhCCCCCCCCEEEE-CCEEEecHHHHHHHHHHhCCCC
Confidence 7999 888999999999999999999987543 59999997 8999999999999999998
Q ss_pred -CCCCC-------CHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccC---CCCC
Q 043341 100 -NFYGQ-------NAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVG---HSLS 151 (758)
Q Consensus 100 -~L~p~-------~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG---~~lT 151 (758)
.|+|. ++.+++++++|+.|+.+.+.+ +.+...|+.||++|++++||+| +++|
T Consensus 84 ~~L~p~~~~~~~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~~~~t 163 (231)
T 1oyj_A 84 PHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLG 163 (231)
T ss_dssp CCSSCCSTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCSCC
T ss_pred CCCCCCccccCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCCCC
Confidence 49998 899999999999987764321 4577889999999999999999 9999
Q ss_pred HhHHHHHHHHhhhhcc--cccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQR--WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~--~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+++++.+.++... ..+......+|+|.+|+++|.++ |++++++..
T Consensus 164 ~ADi~l~~~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 213 (231)
T 1oyj_A 164 FVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRI--DSVVKHLPS 213 (231)
T ss_dssp HHHHHHGGGGGGHHHHHHHHTCCHHHHCHHHHHHHHHHTTS--HHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccChHHHHHHHHHhcC--hHHHHhccC
Confidence 9999999998875321 12333356799999999999999 999887543
|
| >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=203.51 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=133.2
Q ss_pred ccceeEEEecccCCCCcHHHHHHHHHhc------CCCeeeeec------------------CCccEEEeCCC---cEEec
Q 043341 35 LVMTMEIKVLSFPADSPPLLVIAAAKLA------GITIPTETS------------------GSAPTFSFSNG---SKLQG 87 (758)
Q Consensus 35 ~~M~m~L~~l~~~~s~~~~~v~i~l~~~------gl~~~~~~~------------------g~vP~L~~~~g---~~l~E 87 (758)
..|+|+|| ++ .++++++|+++|+++ |++|+.+.+ |+||+|++++| .+|+|
T Consensus 41 ~~~~~~Ly--~~-~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~E 117 (288)
T 3c8e_A 41 GKHPLQLY--SL-GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVFE 117 (288)
T ss_dssp CSSSEEEE--EC-SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEES
T ss_pred CCCceEEe--cC-CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEeC
Confidence 34668998 55 589999999999998 999987532 99999998653 89999
Q ss_pred hHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhccccC-------------C-----------hHHHHHHHHHHHHhcccC
Q 043341 88 TYVLLRYIGRVG-NFYGQNAYEAGEIDEWLDYTPVFS-------------S-----------GSEFENACTYVDKYLERR 142 (758)
Q Consensus 88 S~aIl~yL~~~~-~L~p~~~~era~v~~wl~~~~~~l-------------~-----------~~~l~~~L~~Le~~L~~~ 142 (758)
|.+|++||++++ .|+|.++.+++++++|+.|....+ . ...+...|+.||++|+++
T Consensus 118 S~aI~~YL~~~~~~L~p~d~~~ra~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Le~~L~~~ 197 (288)
T 3c8e_A 118 SGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQH 197 (288)
T ss_dssp HHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHhccCchHHHHHHHHHhhCccccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999998 799999999999999998754320 0 134677899999999999
Q ss_pred CcccCCCCCHhHHHHHHHHhhhhcc--c--ccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 143 TFVVGHSLSIVDIAIWSALAGTGQR--W--DSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 143 ~flvG~~lTlADi~l~~~L~~l~~~--~--~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+|+++|+|||++++.+.++... . ........||+|.+|+++|.++ |+|++++..
T Consensus 198 ~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~--P~~~~~~~~ 258 (288)
T 3c8e_A 198 KFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFLDAGSYKHVQRWAKEVGER--PAVKRGRIV 258 (288)
T ss_dssp SBTTBSSCCHHHHHHTTTHHHHHHTCSTTCTTTTTGGGCHHHHHHHHHHHTS--HHHHHHTTB
T ss_pred CcccCCCCCHHHHHHHHHHHHHHhhccccccccCCchhCHHHHHHHHHHHcC--HHHHHHhcc
Confidence 9999999999999999998875321 1 1112257899999999999999 999998753
|
| >2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=198.82 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=131.1
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|-.+|| +...|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++
T Consensus 8 ~~~~ly--~~~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~d-~g~~l~ES~aI~~YL~~~ 84 (247)
T 2c3n_A 8 MGLELY--LDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKD-GDFTLTESVAILLYLTRK 84 (247)
T ss_dssp -CEEEE--ECTTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEE-TTEEEECHHHHHHHHHHH
T ss_pred cceEEe--ecCCChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEEE-CCEEEEcHHHHHHHHHHh
Confidence 557888 889999999999999999999987532 99999995 899999999999999999
Q ss_pred C----CCCCCCHHHHHHHHHHHHhccccCC----------------------h-------HHHHHHHHHHHHh-cccCCc
Q 043341 99 G----NFYGQNAYEAGEIDEWLDYTPVFSS----------------------G-------SEFENACTYVDKY-LERRTF 144 (758)
Q Consensus 99 ~----~L~p~~~~era~v~~wl~~~~~~l~----------------------~-------~~l~~~L~~Le~~-L~~~~f 144 (758)
+ .|+|.++.+++++++|+.|....+. . +.+...|+.||++ |++++|
T Consensus 85 ~~~~~~L~p~~~~~ra~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~lL~~~~f 164 (247)
T 2c3n_A 85 YKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAF 164 (247)
T ss_dssp TTCCGGGSCSSHHHHHHHHHHHHHGGGTHHHHHHHHHHHHTCCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTTSSS
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCE
Confidence 8 2899999999999999988754321 0 3567789999985 888999
Q ss_pred ccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 145 VVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 145 lvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+|+++|+||+++++.+.+... .+......+|+|.+|+++|.++ |+++.+...
T Consensus 165 l~G~~~T~ADi~~~~~l~~~~~--~~~~~~~~~P~L~~w~~r~~~~--p~~~~~~~~ 217 (247)
T 2c3n_A 165 LTGPHISLADLVAITELMHPVG--AGCQVFEGRPKLATWRQRVEAA--VGEDLFQEA 217 (247)
T ss_dssp SSSSSCCHHHHHHHHHHHHHHH--TTCCSSTTCHHHHHHHHHHHHH--HCHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHh--cCCchhhcChhHHHHHHHHHhc--cCchhHHHH
Confidence 9999999999999998876522 2333357899999999999999 886544433
|
| >2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-22 Score=200.10 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=127.9
Q ss_pred cceeEEEecccCCCCc-HHHHHHHHHhcC------CCeeeeecCCccEEEeCCCcEEechHHHHHHHHHhC-CCCCCCHH
Q 043341 36 VMTMEIKVLSFPADSP-PLLVIAAAKLAG------ITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFYGQNAY 107 (758)
Q Consensus 36 ~M~m~L~~l~~~~s~~-~~~v~i~l~~~g------l~~~~~~~g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~p~~~~ 107 (758)
+|+|+|| +.+.+++ ++++++++++.| +++++.. ++. |+ ||.+|+||.||++||++++ .|+| +.
T Consensus 18 mM~~~Ly--~~~~s~~~~~~vl~~a~~~g~~~~~~v~v~~~~-~~~--l~--dg~~l~ES~AI~~YLa~~~~~L~p--~~ 88 (209)
T 2hra_A 18 KMPSTLT--INGKAPIVAYAELIAARIVNALAPNSIAIKLVD-DKK--AP--AAKLDDATEDVFNKITSKFAAIFD--NG 88 (209)
T ss_dssp -CCEEEE--EETTCSSCCHHHHHHHHHHHHHSTTSEEEEEEC-CTT--SC--SEEETTBCSSHHHHHHHHTTTTSC--CS
T ss_pred eeeEEEE--EcCCCCchhhHHHHHHHHhccCCCCceEEEEee-Ccc--cC--CCCEeecHHHHHHHHHHhCchhcC--HH
Confidence 4788998 7777775 699999999999 5555433 333 43 7779999999999999999 5888 67
Q ss_pred HHHHHHHHHHhccccCCh---HHHHHHHHHHHHhcccCCcccC-CCCCHhHHHHHHHHhhhhcccccccccccChhHHHH
Q 043341 108 EAGEIDEWLDYTPVFSSG---SEFENACTYVDKYLERRTFVVG-HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRW 183 (758)
Q Consensus 108 era~v~~wl~~~~~~l~~---~~l~~~L~~Le~~L~~~~flvG-~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW 183 (758)
+|+++++|+.|..+.+.. +.+...|+.||++|+.++||+| +++|+|||++++.+.+.. ..........||||.||
T Consensus 89 ~ra~v~~wl~~~~~~l~~~~~~~l~~~l~~Le~~L~~~~yl~G~d~lTlADi~l~~~l~~~~-~~~~~~~~~~~P~l~~w 167 (209)
T 2hra_A 89 DKEQVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNG-MCGSIIKNKVDVNVSRW 167 (209)
T ss_dssp CHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTSSCSSTTCCSSCCHHHHHHHHHHHHCT-THHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCCeEecCCcCCHHHHHHHHHHHHHH-HhccccccccCchHHHH
Confidence 899999999998876654 5678889999999999999999 999999999999998752 11111225689999999
Q ss_pred HHHHHhhccchHHHHHHhhh
Q 043341 184 FNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 184 ~~~i~~~~~p~~~~~l~~~~ 203 (758)
+++|.++ |+|+++++...
T Consensus 168 ~~ri~~~--P~~~~~~~~~~ 185 (209)
T 2hra_A 168 YTLLEMD--PIFGEAHDFLS 185 (209)
T ss_dssp HHHHHTS--HHHHTHHHHHH
T ss_pred HHHHHcC--HHHHHHHHHHH
Confidence 9999999 99999988764
|
| >1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=203.45 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=133.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |+||+|+ +||.+|+||.||++||++++
T Consensus 2 ~~Ly--y~~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~~ln~P~gkVPvL~-d~g~~l~ES~aI~~YL~~~~ 78 (280)
T 1b8x_A 2 PILG--YWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKH 78 (280)
T ss_dssp CCCE--EESSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTTTTCCSSCCSSBEE-CSSCEECSHHHHHHHHHHHT
T ss_pred cEEE--EeCCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhhccCCCCCCCCEEE-ECCEEEEcHHHHHHHHHHhc
Confidence 5788 888999999999999999999886422 5899998 48899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccccC--------C----------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFS--------S----------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l--------~----------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+|.++.+++++++|+.+..... . .+.+.+.|+.||++|++++||+|+++|+|||++++.+
T Consensus 79 ~l~p~~~~~ra~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fl~Gd~~TlADi~l~~~l 158 (280)
T 1b8x_A 79 NMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDAL 158 (280)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTHHHHHHHHHGGGTTCSBTTBTSCCTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHH
Confidence 999999999999999987654321 0 1347788999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.++... +......+|+|.+|+++|.++ |++++++.+-
T Consensus 159 ~~~~~~--~~~~~~~~P~L~~w~~rv~~r--P~~~~~~~~~ 195 (280)
T 1b8x_A 159 DVVLYM--DPMCLDAFPKLVCFKKRIEAI--PQIDKYLKSS 195 (280)
T ss_dssp HHHHHH--CTTTTTTCTTHHHHHHHHHTS--HHHHTTTTSS
T ss_pred HHHHhh--ChhhhhhChHHHHHHHHHHhC--HHHHHHHhcC
Confidence 986322 222357899999999999999 9999887653
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-21 Score=214.97 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=171.5
Q ss_pred Ceeeecc-CCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEe---cC----------------------CC---cc--
Q 043341 248 GKVRLRF-APEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRF---DD----------------------TN---PA-- 294 (758)
Q Consensus 248 ~~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRi---eD----------------------td---~~-- 294 (758)
.+|++=| +|||||+|||||+|++++++.+||- ..|.-++|. .| .+ |+
T Consensus 30 ~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~ 109 (464)
T 3fnr_A 30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQY 109 (464)
T ss_dssp CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSSC
T ss_pred CEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Confidence 4688888 7999999999999999999999983 334444442 00 00 10
Q ss_pred --------------------------------cchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCcee
Q 043341 295 --------------------------------KESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 --------------------------------r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY 342 (758)
...+...+.|.++++.||+.+|.+...|+..+.+.+++++|.++|.+|
T Consensus 110 y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~~~~~vv~~L~~~g~~~ 189 (464)
T 3fnr_A 110 YKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIY 189 (464)
T ss_dssp CCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGSTTHHHHHHHHHHTTCEE
T ss_pred cCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHHHHHHHHHHHHHCCCEE
Confidence 001123467899999999999988787665558899999999999999
Q ss_pred ccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCc
Q 043341 343 VDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSK 422 (758)
Q Consensus 343 ~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~ 422 (758)
.+ +++++++.+. .+...|+|+.|+||+
T Consensus 190 e~------------------------------------------dGa~~~~~~~---~g~~~~~vl~ksDG~-------- 216 (464)
T 3fnr_A 190 EQ------------------------------------------EGKIWLASSQ---KGDEKDRVIIREDGR-------- 216 (464)
T ss_dssp EE------------------------------------------TTEEEECGGG---GTCSSCEEEECTTSC--------
T ss_pred Ee------------------------------------------CCeEEEEecc---cCCCCceEEEeCCCc--------
Confidence 32 2245565532 234468999999987
Q ss_pred ccccccc---cccccccccccCccEEe--eCCCCCCchHHHHHHHHHhCCCcceE--eeeeeeec--ccc--cccchhhh
Q 043341 423 YKVYPTY---DFACPFVDAKEGITHAL--RSSEYHDRNAQYYRIQEDLGVRKVHI--YEFSRLNM--VYT--LLSKRKLL 491 (758)
Q Consensus 423 ~~~~PtY---~~a~~vdD~~~githvi--rg~d~~~~~~~~~~l~~alg~~~p~~--~~~~~l~~--~~~--klSKR~~~ 491 (758)
||| |+|+++++..++++++| +|.||+.+.+++..+++++|++++.+ ..|+++++ .|+ |||||+++
T Consensus 217 ----~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn 292 (464)
T 3fnr_A 217 ----GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN 292 (464)
T ss_dssp ----BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS
T ss_pred ----eehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC
Confidence 777 68999999999999994 89999999999999999999986642 33456655 564 99999963
Q ss_pred hhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 492 WFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 492 ~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
..++.++++. +.++++|+|+++. ...++.+|||+++.+.
T Consensus 293 ---------------~v~l~dll~~-~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~ 331 (464)
T 3fnr_A 293 ---------------FILMSDVVDE-IGSDALRYIFLSK-KCDTHLEFDISDLQKE 331 (464)
T ss_dssp ---------------SCBHHHHHHH-HCHHHHHHHTTSS-CTTSCEEEEGGGGGCC
T ss_pred ---------------CCCHHHHHhh-ccHHHHHHHHHhc-CCCCCCccCHHHHHHH
Confidence 3478888887 8999999999886 7889999999998765
|
| >1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-22 Score=206.17 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=134.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|+|| +++.++++++++++|+++|++|+.+.+ |+||+|+ +||.+|+||.+|++||++
T Consensus 1 m~~~Ly--~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~VPvL~-d~~~~l~eS~aI~~yL~~ 77 (254)
T 1bg5_A 1 MSPILG--YWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIAD 77 (254)
T ss_dssp CCCBCC--SCSCSTTTHHHHHHHHHTTCCCBCCCCCGGGTHHHHHHTTTTCCSSCCSSBCC-CSSCCCBSHHHHHHHHHH
T ss_pred CCcEEE--EeCCcchhHHHHHHHHHcCCCceEEeeCCCCHHHHhhcccccCCCCCCCCEEE-ECCEEEecHHHHHHHHHH
Confidence 668898 888899999999999999999886422 6899998 488999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcccc--------CC----------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPVF--------SS----------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~~--------l~----------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
+++|+|.++.+++++++|+.+.... +. .+.+...|+.||++|++++||+|+++|+||+++++
T Consensus 78 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~le~~L~~~~yl~Gd~~T~ADi~l~~ 157 (254)
T 1bg5_A 78 KHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYD 157 (254)
T ss_dssp TTSCSCSSHHHHTHHHHHHHHHHHHHHHHHTTSSSTTCSSSSTTTTTTSTTTSTTTTTTTTTSSSSSSSSCCTHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCCcHHHHHHHH
Confidence 9999999999999999998764321 00 14567788999999999999999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.+.++... +......||+|.+|+++|.++ |++++++..-
T Consensus 158 ~l~~~~~~--~~~~~~~~p~l~~w~~~i~~~--p~~~~~~~~~ 196 (254)
T 1bg5_A 158 ALDVVLYM--DPMCLDAFPKLVCFKKRIEAI--PQIDKYLKSS 196 (254)
T ss_dssp HTTSSTTT--CTTTTTSCHHHHHHHHHTSCS--HHHHHHHTTT
T ss_pred HHHHHHhh--ChhhhhcChHHHHHHHHHHhC--hHHHHHHhcC
Confidence 99986322 222467899999999999999 9999998764
|
| >2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=193.83 Aligned_cols=158 Identities=10% Similarity=0.085 Sum_probs=126.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeee---------------c---CCccEEEe-CCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTET---------------S---GSAPTFSF-SNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~---------------~---g~vP~L~~-~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.++++++|+++|+++|++|+.+. . |+||+|++ +||.+|+||.||++||++++
T Consensus 20 ~~Ly--~~~~~~~~~~vrl~L~e~gi~ye~~~~~~~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~AI~~YLa~~~ 97 (248)
T 2fno_A 20 FDLY--YWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLGERL 97 (248)
T ss_dssp EEEE--CCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHHHHHHT
T ss_pred eEEE--ecCCCCchHHHHHHHHHcCCCcEeeccchHHHHHhccccccCCCCCCCCEEEeccCCEEEecHHHHHHHHHHHc
Confidence 7998 88877889999999999999998742 1 99999963 68899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccc------------cCCh-------HHHHHHHHHHHHhccc------CCcccCCC-CCHh
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPV------------FSSG-------SEFENACTYVDKYLER------RTFVVGHS-LSIV 153 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~------------~l~~-------~~l~~~L~~Le~~L~~------~~flvG~~-lTlA 153 (758)
+|+|.++.+|+++++|+.+... .+.+ +.+.+.|+.||++|+. ++|++|++ +|+|
T Consensus 98 ~L~p~~~~~ra~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~~~~~~l~Gd~~~T~A 177 (248)
T 2fno_A 98 DILPATVEGRTLSAKIVNDANDVLDELTLNGGREMWTPEKWQEFVPRLQKWIRIFADTGARNGLSAASGFMLGTEKIGVA 177 (248)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHHHHHHHTGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCTTSCSSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeecCCCccHH
Confidence 9999999999999999864321 1111 3467889999999985 78999999 9999
Q ss_pred HHHHHHHHhhhhc-cccc-c-cccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 154 DIAIWSALAGTGQ-RWDS-L-RKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 154 Di~l~~~L~~l~~-~~~~-~-~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
||++ +.+..+.. .... . .....||+|.+|+++|.++ |++++++.+
T Consensus 178 Di~l-~~l~~~~~~~~~~~~~~~~~~~P~l~~w~~rv~~r--P~~~~~~~~ 225 (248)
T 2fno_A 178 DIVT-AILWTTVADRFPAIKGIIEDTSPIIWGLSRRVVAT--APLAALNSK 225 (248)
T ss_dssp HHHH-HHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHS--HHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhccchhhhhhhcCcHHHHHHHHHHcC--hhHHHHhhh
Confidence 9999 65554311 1111 1 1235899999999999999 999998843
|
| >1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=194.61 Aligned_cols=159 Identities=15% Similarity=0.235 Sum_probs=129.5
Q ss_pred ceeEEEecccC--------CCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFP--------ADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~--------~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|.|+|| +.+ .||++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++
T Consensus 6 ~~~~Ly--~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~VPvL~~-~g~~l~eS~aI~~ 82 (241)
T 1k0m_A 6 PQVELF--VKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGELPFLLY-GTEVHTDTNKIEE 82 (241)
T ss_dssp CCEEEE--EEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHCTTCCSSEEEE-TTEEEECHHHHHH
T ss_pred CceEEE--eecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCcccHHHHHHhCCCCCCCEEEE-CCEEecCHHHHHH
Confidence 448888 433 567889999999999999987543 99999995 8999999999999
Q ss_pred HHHHhC-C-----CCCCCHHH-HHHHHHHHHhcccc--CCh-------HHHHHHHHHHHHhc------------------
Q 043341 94 YIGRVG-N-----FYGQNAYE-AGEIDEWLDYTPVF--SSG-------SEFENACTYVDKYL------------------ 139 (758)
Q Consensus 94 yL~~~~-~-----L~p~~~~e-ra~v~~wl~~~~~~--l~~-------~~l~~~L~~Le~~L------------------ 139 (758)
||++++ . |+|.++.+ ++++++|+.|.... ..+ ..+...|+.||++|
T Consensus 83 yL~~~~~~~~~~~L~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~~~~~~~~~~ 162 (241)
T 1k0m_A 83 FLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEGVDETSAEDEGV 162 (241)
T ss_dssp HHHHHSCTTTSCCCSCSSGGGGTTTTTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTCCHHHHHSC
T ss_pred HHHHhcCCCCCCcCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 999998 3 89999888 89999998874211 111 46788899999999
Q ss_pred ccCCcccCCCCCHhHHHHHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 140 ERRTFVVGHSLSIVDIAIWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 140 ~~~~flvG~~lTlADi~l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
++++||+|+++|+|||++++.+.++... ..+......||+|.+|+++|.++ |+|++++.
T Consensus 163 ~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~ 224 (241)
T 1k0m_A 163 SQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAR--EEFASTCP 224 (241)
T ss_dssp CCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTS--HHHHTTSC
T ss_pred CCCccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHhcC--hhHhhcCC
Confidence 7789999999999999999999986311 22333347899999999999999 99987654
|
| >4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=204.58 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=137.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC----
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---- 99 (758)
++|| ++..|+++.+++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++.+
T Consensus 253 ~~L~--~~~~sp~~~rv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 330 (471)
T 4ags_A 253 HVLY--SNLFCPFVDRARLASELRKFQMHIVEVPLHPQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQYIDCVATKGS 330 (471)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCCSSCCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHHCCSSC
T ss_pred EEEE--ecCCCchHHHHHHHHHHCCCCcEEEEecCCcCcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHHHHhccCCCC
Confidence 7999 899999999999999999999998653 9999999779999999999999999976
Q ss_pred CCCCC-CHHHHHHHHHHHHhccccCCh-------------HHHHHHHHHHHHhcccC-----CcccCCCCCHhHHHHHHH
Q 043341 100 NFYGQ-NAYEAGEIDEWLDYTPVFSSG-------------SEFENACTYVDKYLERR-----TFVVGHSLSIVDIAIWSA 160 (758)
Q Consensus 100 ~L~p~-~~~era~v~~wl~~~~~~l~~-------------~~l~~~L~~Le~~L~~~-----~flvG~~lTlADi~l~~~ 160 (758)
.|+|. ++.+++++++|+.++...+.. +.+...|+.||++|+.+ +||+|+++|+||+++++.
T Consensus 331 ~L~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~fl~Gd~~t~ADi~l~~~ 410 (471)
T 4ags_A 331 ALVPRGDAEKEYEVGFFVENAGYFVGGLMSWIIRGGEDAKAELQWAAGELEQQLAKHPFGEGPFFGGKRMNAGDVAILPF 410 (471)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCTTCSSSBTTBSSCCHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccCCCCccCCCCCcHHHHHHHHH
Confidence 59999 999999999999987753321 57888999999999654 599999999999999999
Q ss_pred Hhhhhcc----cccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 161 LAGTGQR----WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 161 L~~l~~~----~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.++... ..+......||+|.+|+++|.++ |+|++++..
T Consensus 411 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~--p~~~~~~~~ 453 (471)
T 4ags_A 411 LVRAKAFMPEFSGGYDLFAHFPLLNGLAEAGMAT--PEAKSVFRT 453 (471)
T ss_dssp HHHHHHHTTTTTTTCCGGGTCHHHHHHHHHHHTS--HHHHHHCCC
T ss_pred HHHHHHHHHhhcCCccccccChHHHHHHHHHhcC--HHHHHhcCC
Confidence 9987432 12333457899999999999999 999998654
|
| >4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=205.26 Aligned_cols=158 Identities=14% Similarity=0.210 Sum_probs=131.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCC--CcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSN--GSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~--g~~l~ES~aIl~yL~~~~- 99 (758)
|+|| ++..|+++++|+++|+++|++|+.+.+ |+||+|++++ |.+|+||.||++||++++
T Consensus 27 ~~Ly--~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~~yL~~~~~ 104 (471)
T 4ags_A 27 LKLY--VSATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIAQYLDNSGA 104 (471)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHHHHHHHHTSS
T ss_pred eEEE--CCCCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHHHHHHHHhcC
Confidence 7898 888899999999999999999998653 9999999966 699999999999999996
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCCh--------------HHHHHHHHHHHHhc----ccCCcccCCCCCHhHHHHH
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSSG--------------SEFENACTYVDKYL----ERRTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~~--------------~~l~~~L~~Le~~L----~~~~flvG~~lTlADi~l~ 158 (758)
.|+|.++.+|+++++|+.+..+.+.+ +.+...+..++..| ++++||+|+++|+|||+++
T Consensus 105 ~~~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~l~~~~~l~G~~~t~ADi~l~ 184 (471)
T 4ags_A 105 PAGALMGSSAAQRHQIEFFLAQVGDFIGAAHGLLRDPLSGEKRKAMDDNAAYVDGLLAANQTTGPYYCDGEFTMADVALV 184 (471)
T ss_dssp STTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHCSSCSBTBBTBCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCHhHHHHH
Confidence 59999999999999999877654321 34555555555555 4789999999999999999
Q ss_pred HHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 159 SALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 159 ~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.++... ..+......+|+|.+|+++|.++ |++++++.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~ 227 (471)
T 4ags_A 185 PFLVRLKPALMYYAGYDVFCKAPRMKALWAAAAQR--ASVRETSP 227 (471)
T ss_dssp HHHHHHHHHHHHHHSCCTTTTCHHHHHHHHHHTTS--HHHHTTCC
T ss_pred HHHHHHHHHhhhhcCCcccCCChHHHHHHHHHhcC--hHHHHhcc
Confidence 999987321 23444457899999999999999 99987754
|
| >2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=186.87 Aligned_cols=160 Identities=13% Similarity=0.167 Sum_probs=125.8
Q ss_pred ceeEEEec------ccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 37 MTMEIKVL------SFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 37 M~m~L~~l------~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
|.|+||.. +...|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||
T Consensus 12 ~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~ES~aI~~YL 90 (247)
T 2r4v_A 12 PEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVY-NKELKTDFIKIEEFL 90 (247)
T ss_dssp CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC----------CCSSSCEEEE-TTEEECCHHHHHHHH
T ss_pred CCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcccchHHHHHhCCCCCCCEEEE-CCEeccCHHHHHHHH
Confidence 34777611 466788999999999999999987532 99999996 899999999999999
Q ss_pred HHhC------CCCCCCHHHHHHHHHHHHhcccc---CC-------hHHHHHHHHHHHHhc------------------cc
Q 043341 96 GRVG------NFYGQNAYEAGEIDEWLDYTPVF---SS-------GSEFENACTYVDKYL------------------ER 141 (758)
Q Consensus 96 ~~~~------~L~p~~~~era~v~~wl~~~~~~---l~-------~~~l~~~L~~Le~~L------------------~~ 141 (758)
++++ .|+|.++.+++.+..|....... .. .+.+...|+.||++| ++
T Consensus 91 ~~~~~~~~~~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~e~~~~~~~~~~~~~ 170 (247)
T 2r4v_A 91 EQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSR 170 (247)
T ss_dssp HHHSCTTTSCCCCCSSTHHHHTTTTHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCCTTCCCTTTSSCCSSCC
T ss_pred HHhcCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccccccCC
Confidence 9998 48998888887666654322110 11 145778899999999 67
Q ss_pred CCcccCCCCCHhHHHHHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 142 RTFVVGHSLSIVDIAIWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 142 ~~flvG~~lTlADi~l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
++||+|+++|+||+++++.+.++... ..+......+|+|.+|+++|.++ |+|++++
T Consensus 171 ~~~l~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~ri~~r--p~~~~~~ 229 (247)
T 2r4v_A 171 RLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAR--EEFTHTC 229 (247)
T ss_dssp CSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTC--HHHHTTS
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHhcC--cchhhhc
Confidence 79999999999999999999986311 12333347899999999999999 9998764
|
| >3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-19 Score=179.23 Aligned_cols=149 Identities=13% Similarity=0.205 Sum_probs=123.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~ 102 (758)
|+|| +++.|++|++++++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++++ .++
T Consensus 4 ~~Ly--~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL~~~~~~~~l 81 (218)
T 3ir4_A 4 MKLY--IYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLL 81 (218)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTCCHHHHHHHSSSCSCEEECTTSCEEECHHHHHHHHHHTTSCCSC
T ss_pred EEEE--cCCCCchHHHHHHHHHHcCCceEEEECCCcchhhhhhcCCCceeeeEEEeCCeEeeCHHHHHHHHHHhCCCcCC
Confidence 7999 888999999999999999999998753 9999999669999999999999999998 577
Q ss_pred CCCHHHHHHHHHHHHhccccCCh---------------------------------------------HHHHHHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSSG---------------------------------------------SEFENACTYVDK 137 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~~---------------------------------------------~~l~~~L~~Le~ 137 (758)
|.+ +++++++|+.++...+.+ +.+...|+.||+
T Consensus 82 p~~--~~a~~~~w~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~L~~le~ 159 (218)
T 3ir4_A 82 TGK--RNPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDK 159 (218)
T ss_dssp CCC--CCHHHHHHHHHHHTTTHHHHHHHHTTSCCGGGCSHHHHHHHHHHHHHHHCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCc--cHHHHHHHHHHHHHHHHHHhccchhhccccccCCHHHHHHHHHhhhhhccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 766 689999999877654321 234567899999
Q ss_pred hcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 138 ~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+|++++|+.| ++|+||+++++.+.++... .+. ...|+|.+|+++|.++ |+++.+
T Consensus 160 ~L~~~~~lgg-~~t~ADi~l~~~l~~~~~~-~~~---~~~p~l~~w~~r~~~r--p~v~~~ 213 (218)
T 3ir4_A 160 LIVQPNAVNG-ELSEDDIHLFPLLRNLTLV-AGI---HWPTKVADYRDNMAKQ--TQINLL 213 (218)
T ss_dssp HCCBTTBTTS-SCCHHHHHHHHHHHHHTTS-TTC---CCCHHHHHHHHHHHHH--HTCCCC
T ss_pred HhccccccCC-CCCHHHHHHHHHHhheeec-ccC---cCCHHHHHHHHHHHHh--cCCCch
Confidence 9999999755 9999999999999986322 222 2249999999999999 887554
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=208.48 Aligned_cols=234 Identities=16% Similarity=0.266 Sum_probs=165.1
Q ss_pred eeeecc-CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecC-------------------------CC-----
Q 043341 249 KVRLRF-APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDD-------------------------TN----- 292 (758)
Q Consensus 249 ~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieD-------------------------td----- 292 (758)
+|++=| .|||+|+|||||+|++++++.+|| +|...++-.|.| +|
T Consensus 144 ~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~ 223 (607)
T 1f7u_A 144 KVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDV 223 (607)
T ss_dssp EEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHH
T ss_pred eEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHH
Confidence 455555 899999999999999999999998 344444444555 11
Q ss_pred ------------------------------------c------ccchHHHHHHHHHHHHHhCCCCCCcccccCCH-HHHH
Q 043341 293 ------------------------------------P------AKESNEFVDNLLKDIETLGIKYETVTYTSDYF-PDLM 329 (758)
Q Consensus 293 ------------------------------------~------~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~-~~~~ 329 (758)
+ +...+.+++.+.++++.|||.+|.++.+|++. +.+.
T Consensus 224 Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~ 303 (607)
T 1f7u_A 224 YVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESML 303 (607)
T ss_dssp HHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHH
Confidence 1 11233467889999999999999888999998 7899
Q ss_pred HHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEE
Q 043341 330 EMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYY 409 (758)
Q Consensus 330 ~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~ 409 (758)
++++.|.++|++|..+ +++.++++.. .....+.|+.
T Consensus 304 ~vi~~L~~kG~~ye~d------------------------------------------Ga~~~~~~~~--g~~~d~~v~~ 339 (607)
T 1f7u_A 304 KAIDLFKEKGLTHEDK------------------------------------------GAVLIDLTKF--NKKLGKAIVQ 339 (607)
T ss_dssp HHHHHHHHTTCEEEET------------------------------------------TEEEEEGGGT--CTTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEC------------------------------------------CcEEEEeccc--CCCCCceeEe
Confidence 9999999999999421 2344444322 1122247888
Q ss_pred EeCCCCCcccCCcccccccc---ccccccccc-ccCccEEe--eCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccc
Q 043341 410 RCNPIPHHRIGSKYKVYPTY---DFACPFVDA-KEGITHAL--RSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYT 483 (758)
Q Consensus 410 R~~~~~~~~~~~~~~~~PtY---~~a~~vdD~-~~githvi--rg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~ 483 (758)
|++|+ |+| |||++++.+ .++.+++| .|.+|..|.++...+++++|++.+.+|+|..+-+. .
T Consensus 340 KsDG~------------~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v-~ 406 (607)
T 1f7u_A 340 KSDGT------------TLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV-Q 406 (607)
T ss_dssp CTTSC------------CCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE-E
T ss_pred ccCCC------------cCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEeccccc-c
Confidence 99877 555 678888877 46889988 79999999999999999999987766666332111 2
Q ss_pred cccchhh-----hhhhhcCccCCCCCCCcchHHHHHHc----------------CCCHHHHHHHHHHhccccccccccHH
Q 043341 484 LLSKRKL-----LWFVQNGKVDGWDDPRFPTVQGIVRR----------------GLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 484 klSKR~~-----~~li~~g~~~gwddpr~~tl~~l~~~----------------G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
+||||++ ++|+++... +. ..+.++ -+...+||+|+++ .+++++.+|||+
T Consensus 407 kMSkR~G~~v~L~dLlde~~~------~a---~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d 476 (607)
T 1f7u_A 407 GMSTRKGTVVFLDNILEETKE------KM---HEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWE 476 (607)
T ss_dssp SCCGGGTCCCBHHHHHHHHHH------HH---HHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHH
T ss_pred cccCCCCCcccHHHHHHHHHH------HH---HHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHH
Confidence 7999984 444443211 00 011111 0122478888777 599999999999
Q ss_pred HHHHHHH
Q 043341 543 KLWTINK 549 (758)
Q Consensus 543 ~l~~~n~ 549 (758)
++.+++.
T Consensus 477 ~~~~~~g 483 (607)
T 1f7u_A 477 RMLSFEG 483 (607)
T ss_dssp HHHCCSS
T ss_pred HHHHHhc
Confidence 9998876
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=201.49 Aligned_cols=285 Identities=12% Similarity=0.059 Sum_probs=161.5
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~L 311 (758)
++|.-.|+|||++||||+|++++.+.+|| +|+..|+..+||.+. ....+++.+.|.++|++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999988 466678888888653 445667899999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceecc-------CCchHHHHHH-hcC---CC-CCcCCCCCHH--------
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYVD-------DTPREQMQKE-RMD---GI-ESKCRNNSIE-------- 369 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~~-------~~~~e~~~~~-~~~---~~-~~~~r~~~~~-------- 369 (758)
||.+|.++++++ +.+.+++++++|+++|++|.. ..+...+.+. -.. |. .+.|.. +++
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~-~~e~~~~~~~f 186 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGT-PVEWVEEESYF 186 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSS-BCEEEEEEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCC-cceEEeccceE
Confidence 999998777776 889999999999999999932 1110000000 001 11 111221 110
Q ss_pred ----HHHH-HHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCCccccccccc------cccc---
Q 043341 370 ----ENMK-LWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGSKYKVYPTYD------FACP--- 434 (758)
Q Consensus 370 ----~~~~-~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~~~~~~PtY~------~a~~--- 434 (758)
+-.+ +.+...++...-.+...+-.+ ..--...++|+++-|.+.. +++.-++.-++..+|- +++.
T Consensus 187 ~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~-~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~ 265 (536)
T 4dlp_A 187 FRLSAYQDKLLDLYENNPGFIMPAERRNEI-VSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYP 265 (536)
T ss_dssp ECGGGGHHHHHHHHHHCTTSEESHHHHHHH-HHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTT
T ss_pred EecHHHHHHHHHHHHhCCCccCcHHHHHHH-HHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCC
Confidence 0000 000000000000000000000 0000135789999996421 1221122111222220 0000
Q ss_pred --cccccc--Cc-cEEeeCCCCCC-chHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCc
Q 043341 435 --FVDAKE--GI-THALRSSEYHD-RNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRF 507 (758)
Q Consensus 435 --vdD~~~--gi-thvirg~d~~~-~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~ 507 (758)
-++... .. -|+ -|.|++. |+..+..++.++|.+.|. ++.++++.+.|+|||||+++ .
T Consensus 266 ~~~~~~~~~~p~dv~~-~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GN---------------v 329 (536)
T 4dlp_A 266 DTTDERWAYWPANAHI-IGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGN---------------V 329 (536)
T ss_dssp CTTSGGGGGCSCSEEE-EEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC---------------------------
T ss_pred CCchHHHhhCCcceEE-eechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCC---------------C
Confidence 001111 01 233 3888773 455566677889987664 55568898999999999974 3
Q ss_pred chHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHhhcc
Q 043341 508 PTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKKIID 553 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~~l~ 553 (758)
.++.++.+. ++++++|.|+++.+...++.+|+++.+... |++...
T Consensus 330 i~p~d~i~~-~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 375 (536)
T 4dlp_A 330 IDPFELVER-YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLAN 375 (536)
T ss_dssp CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCC
T ss_pred CCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467788877 899999999998767888999999998774 444433
|
| >2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=188.07 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=124.5
Q ss_pred eEEEec------ccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVL------SFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l------~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+||.. +...|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.+|++||++
T Consensus 19 i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~gkVPvL~~-~g~~l~ES~aI~~YL~~ 97 (267)
T 2ahe_A 19 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITF-NSEVKTDVNKIEEFLEE 97 (267)
T ss_dssp EEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHSTTCCSCEEEE-TTEEECCHHHHHHHHHH
T ss_pred EEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCcccChHHHHHhCCCCCCCEEEE-CCEEecCHHHHHHHHHH
Confidence 677711 345678899999999999999987543 99999997 88999999999999999
Q ss_pred hC-C-----CCCCCHHHHHHHHHHHHhcccc---CC-------hHHHHHHHHHHHHhc------------------ccCC
Q 043341 98 VG-N-----FYGQNAYEAGEIDEWLDYTPVF---SS-------GSEFENACTYVDKYL------------------ERRT 143 (758)
Q Consensus 98 ~~-~-----L~p~~~~era~v~~wl~~~~~~---l~-------~~~l~~~L~~Le~~L------------------~~~~ 143 (758)
++ . |+|.++.+++.+..|+...... .. ...+...|+.||++| ++++
T Consensus 98 ~~~~~~~~~L~p~d~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~e~~~~~~~~~~~~~~~ 177 (267)
T 2ahe_A 98 VLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRK 177 (267)
T ss_dssp HSCTTTSCCCSCSSGGGGTTTTTHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCC--------------CCCS
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcccchhcchhhcccccCCCc
Confidence 98 3 8898888887666665432111 11 145678899999999 6789
Q ss_pred cccCCCCCHhHHHHHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 144 FVVGHSLSIVDIAIWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 144 flvG~~lTlADi~l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
||+|+++|+||+++++.+.++... ..+......||+|.+|+++|.++ |+|++++.
T Consensus 178 fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~r--p~~~~~~~ 235 (267)
T 2ahe_A 178 FLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSR--DEFTNTCP 235 (267)
T ss_dssp BTTBSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTC--HHHHTTSC
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHhcC--HHHHHhcC
Confidence 999999999999999999876311 12233347899999999999999 99987653
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-19 Score=205.51 Aligned_cols=289 Identities=15% Similarity=0.154 Sum_probs=176.7
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCc---eEEEEecCC-------------CcccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQG---QLIVRFDDT-------------NPAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G---~~ilRieDt-------------d~~r~~~~~~~~i~~dl~~ 310 (758)
-++|--+|+|||++||||+|++++.+.+|| ...| .|+..+||. +++...+++.+.|.++|++
T Consensus 20 ~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 99 (560)
T 3h99_A 20 ILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAG 99 (560)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 488889999999999999999999999998 3444 555555543 3455667889999999999
Q ss_pred hCCCCCCccccc--CCHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCC------------CCC-cCCCC-C
Q 043341 311 LGIKYETVTYTS--DYFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDG------------IES-KCRNN-S 367 (758)
Q Consensus 311 LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~------------~~~-~~r~~-~ 367 (758)
|||.+|.+++++ .+.+.+++++++|.++|++| .|..+...+.+..-.| ..| .|... .
T Consensus 100 lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~ 179 (560)
T 3h99_A 100 FNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYS 179 (560)
T ss_dssp TTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCC
T ss_pred cCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCC
Confidence 999999776666 46677899999999999999 2221111111100000 000 01100 0
Q ss_pred HHHHHHHHHHHhcCccC--CceeeEEeeecCCC-----------------------CCCCCCCcEEEEeCCC-CCcccCC
Q 043341 368 IEENMKLWKEMIAGSER--GLECCLRGKLDMQD-----------------------PNKSLRDPVYYRCNPI-PHHRIGS 421 (758)
Q Consensus 368 ~~~~~~~~~~~~~g~~~--~~~~~~R~k~~~~~-----------------------~~~~~~D~vl~R~~~~-~~~~~~~ 421 (758)
..+... -.-...|... ..+..+.+|++... -...++|+.+-|.... +++.-++
T Consensus 180 ~~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~ 258 (560)
T 3h99_A 180 PTELIE-PKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNA 258 (560)
T ss_dssp GGGCEE-EEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTC
T ss_pred hhhhcC-CccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCC
Confidence 000000 0000000000 00112223321100 0025789999998732 1111111
Q ss_pred ccccccccc-----ccccc------------------cccccCccEEeeCCCCCC-chHHHHHHHHHhCCCcc-eEeeee
Q 043341 422 KYKVYPTYD-----FACPF------------------VDAKEGITHALRSSEYHD-RNAQYYRIQEDLGVRKV-HIYEFS 476 (758)
Q Consensus 422 ~~~~~PtY~-----~a~~v------------------dD~~~githvirg~d~~~-~~~~~~~l~~alg~~~p-~~~~~~ 476 (758)
.-....+|- +...+ .|....+.|++ |.|++. |+..+..++.++|++.| .++.|+
T Consensus 259 ~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg 337 (560)
T 3h99_A 259 PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHG 337 (560)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEEC
T ss_pred CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEe
Confidence 111111220 00000 23333456776 999884 56666678899999877 455578
Q ss_pred eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc-ccccccHHHHHH-HHHhhccc
Q 043341 477 RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK-NLNLMEWDKLWT-INKKIIDP 554 (758)
Q Consensus 477 ~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~-~~~~~d~~~l~~-~n~~~l~~ 554 (758)
++.+.|+|||||+++ ..++.+++++ |+++++|.|++..+... .+.+|+++.+.. .|++.+..
T Consensus 338 ~v~~~G~KMSKS~GN---------------vv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~ 401 (560)
T 3h99_A 338 YVTVNGAKMSKSRGT---------------FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 401 (560)
T ss_dssp CEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred EEEeCCeeccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999973 4588888888 99999999999876655 789999999875 56666554
Q ss_pred c
Q 043341 555 V 555 (758)
Q Consensus 555 ~ 555 (758)
+
T Consensus 402 l 402 (560)
T 3h99_A 402 V 402 (560)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-19 Score=172.49 Aligned_cols=142 Identities=19% Similarity=0.390 Sum_probs=118.0
Q ss_pred HHHHHHhcCCCee-----eeecCCccEEEeCCCcEEechHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhccccCCh-
Q 043341 55 VIAAAKLAGITIP-----TETSGSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYGQNAYEAGEIDEWLDYTPVFSSG- 125 (758)
Q Consensus 55 v~i~l~~~gl~~~-----~~~~g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p~~~~era~v~~wl~~~~~~l~~- 125 (758)
++-+..+.++.-. ... |+||+|+++||.+|+||.+|++||++++ .|+|.++.+++++++|+.|..+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~nP-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~ 85 (174)
T 2uz8_A 7 LSLLEKSLGLSKGNKYSAQGE-RQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGSTAEEKAMVQQWLEYRVTQVDGH 85 (174)
T ss_dssp HHHHHHHTTCCSCCCCEEETT-TTEEEEECSSCCEEESHHHHHHHHHHHTTCGGGGCSSHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhcCCccHHHHhcCC-CccceEEcCCCCEeecHHHHHHHHHHhCCCcccCCcCHHHHHHHHHHHHHHHHhcCcc
Confidence 5566677776533 224 9999999778999999999999999998 59999999999999999998876653
Q ss_pred ---HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 ---SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ---~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+...|+.||++|++++|++|+++|+||+++++.+.++.... .......+|+|.+|+++|.++ |++++++.
T Consensus 86 ~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~~~~~~-~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~ 160 (174)
T 2uz8_A 86 SSKNDIHTLLMDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVDL-TVQEKEKYLNVSRWFCHIQHY--PGIRQHLS 160 (174)
T ss_dssp ---CHHHHHHHHHHHHGGGCSSTTSSSCCHHHHHHHHHHHHHHTTC-CHHHHHHTHHHHHHHHHHHHS--TTTCTTSC
T ss_pred chHHHHHHHHHHHHHHhccCcEEeCCCCCHHHHHHHHHHHHHHHhc-cHHHHhhChHHHHHHHHHHhC--HhHHhhcc
Confidence 6788999999999999999999999999999999998763211 112356799999999999999 98877644
|
| >3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=185.84 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=123.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------------------------C--Cc
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------------------------G--SA 74 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------------------------g--~v 74 (758)
++|| ++..||+++||+|+++++|++ +.+.+ | +|
T Consensus 62 ~~LY--~~~~cP~a~Rv~I~L~lkGL~-e~i~vdl~~~~~~~~~W~~~~~P~g~~P~~~~~~l~~~y~~~nP~y~Gr~tV 138 (362)
T 3m1g_A 62 YRLV--AARACPWAHRTVITRRLLGLE-NVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDYPRGITV 138 (362)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCT-TTSEEEECCCCCC------------------------------------CCS
T ss_pred EEEE--ecCCCccHHHHHHHHHHhCCC-ceEEEeccCCccCCCCcEecCCCCCCCccchhhhHHHHHHHhCCCCCCCcce
Confidence 7999 888999999999999999998 43211 2 59
Q ss_pred cEEEeC--CCcEEechHHHHHHHHHhC---------CCCCCCHHHHHHHHHHHHhccccCCh------------------
Q 043341 75 PTFSFS--NGSKLQGTYVLLRYIGRVG---------NFYGQNAYEAGEIDEWLDYTPVFSSG------------------ 125 (758)
Q Consensus 75 P~L~~~--~g~~l~ES~aIl~yL~~~~---------~L~p~~~~era~v~~wl~~~~~~l~~------------------ 125 (758)
|+|++. ++.+|+||.||++||++++ .|+|.+ .++++++|+.|....+..
T Consensus 139 PvL~D~~~g~~Vl~ES~AIl~YL~e~~~~~~~~~~~~L~P~d--~ra~i~~~~~~i~~~i~~~v~~~~fa~~qea~e~a~ 216 (362)
T 3m1g_A 139 PALVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAE--LREEMAPVMKRIFTEVNNGVYRTGFAGSQEAHNEAY 216 (362)
T ss_dssp SEEEETTTCCEEECCHHHHHHHHHHTSGGGSCTTCCCSSCGG--GHHHHHHHHHHHHHHTTTHHHHHHTCSSHHHHHHHH
T ss_pred eEEEEcCCCCEEeecHHHHHHHHHHhhccccCCCccccCChh--HHHHHHHHHHHHHHHhhhhhhhhhccCCHHHHHHHH
Confidence 999873 5678899999999999986 488875 578888898876554331
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccc---cc--ccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW---DS--LRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~---~~--~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+.+...|+.||.+|+.++||+|+++|+|||++++++.++.... .. ...+..||+|.+|+++|.++ |+|++++
T Consensus 217 ~~l~~~L~~LE~~L~~~~yl~Gd~lTlADI~L~~~l~r~~~v~~~~f~~~~~~l~~yP~L~aW~~rl~~r--Pa~k~t~ 293 (362)
T 3m1g_A 217 KRLWVALDWLEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQT--PGFGDTT 293 (362)
T ss_dssp HHHHHHHHHHHHHTTSSSBTTBSSCCHHHHHHHHHHHTCCCCCTTTTCCCSSCGGGSHHHHHHHHHHHTS--TTTGGGC
T ss_pred HHHHHHHHHHHHHhccCCccCCCCCCeeeeEEEEeehhhhhhhhccccccccchhhChHHHHHHHHHHcC--HHHHHhc
Confidence 4577889999999999999999999999999999998753221 11 11246899999999999999 9998865
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-19 Score=205.12 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=162.6
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC-------------------------------C-c
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT-------------------------------N-P 293 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt-------------------------------d-~ 293 (758)
+-=-.|||+|+|||||+|++++.+.+|| +|...++-.|.|. + +
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNP 202 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCC
T ss_pred EEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccCc
Confidence 3344799999999999999999999998 3444555556664 1 1
Q ss_pred ----------------------------------------ccchHHHHHHHHHHHHHhCCCCCCcccccCC--HHHHHHH
Q 043341 294 ----------------------------------------AKESNEFVDNLLKDIETLGIKYETVTYTSDY--FPDLMEM 331 (758)
Q Consensus 294 ----------------------------------------~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~--~~~~~~~ 331 (758)
+...+.+.+.+.++++.|||.+|.+..+|++ .+.+.++
T Consensus 203 ~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~v 282 (629)
T 2zue_A 203 IDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIA 282 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHH
Confidence 1223456788999999999999998899998 6789999
Q ss_pred HHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCC---cEE
Q 043341 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRD---PVY 408 (758)
Q Consensus 332 ~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D---~vl 408 (758)
+++|.++|.+|.+.. |.. ++++.++.+. .+...| .|+
T Consensus 283 i~~L~~kG~~y~~~~----------------------------------ge~---~Ga~~v~~~~---~g~~~~~~~~v~ 322 (629)
T 2zue_A 283 LELLSKNENFYIPSD----------------------------------GKY---RGAFVMDLRK---LFPDMKNPILVL 322 (629)
T ss_dssp HHHHHTSTTEECCSS----------------------------------STT---TTCEEEECTT---TCSSSSCCEEEE
T ss_pred HHHHHHCCCcccccc----------------------------------CCc---CCcEEEECcc---cCCccccCceEE
Confidence 999999999994320 111 1123333321 122234 688
Q ss_pred EEeCCCCCcccCCcccccccccccccccc------------c-----------------ccCccEEe--eCCCCCCchHH
Q 043341 409 YRCNPIPHHRIGSKYKVYPTYDFACPFVD------------A-----------------KEGITHAL--RSSEYHDRNAQ 457 (758)
Q Consensus 409 ~R~~~~~~~~~~~~~~~~PtY~~a~~vdD------------~-----------------~~githvi--rg~d~~~~~~~ 457 (758)
.|++|+..+.+. |+|++... + ..+.+|+| -|.+|..+-.+
T Consensus 323 ~ksdG~~~Y~~~---------Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~ 393 (629)
T 2zue_A 323 RRSDGTATYTGK---------DIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLA 393 (629)
T ss_dssp ECTTSCBCHHHH---------HHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHHHHH
T ss_pred EecCCccccchh---------hHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhHHHH
Confidence 888876332222 22222221 0 01445553 48899888888
Q ss_pred HHHHHHHhCCCc-ceEe---eeeeeecccccccchhh--hhhhhcCccCCCCCCCcchHHHHHHcC--------------
Q 043341 458 YYRIQEDLGVRK-VHIY---EFSRLNMVYTLLSKRKL--LWFVQNGKVDGWDDPRFPTVQGIVRRG-------------- 517 (758)
Q Consensus 458 ~~~l~~alg~~~-p~~~---~~~~l~~~~~klSKR~~--~~li~~g~~~gwddpr~~tl~~l~~~G-------------- 517 (758)
...+++++|++. +..| .|+++++.+.|||||++ +. .++++|++.+
T Consensus 394 l~~~l~~lG~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~---------------v~l~dLl~e~~~~a~~~~~~~~~~ 458 (629)
T 2zue_A 394 IKYALQLLGFEDAAANLYHLAYEHVERPEGKFSGRKGTWVG---------------FTVDEVIQEAVKRARELIEEKNPA 458 (629)
T ss_dssp HHHHHHHTTCHHHHHTEEEEEECCEEBTTBCCCTTTTTTTT---------------CBHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCCCCCCeEEEEEeeeEEcCCCcccCCCCCCCe---------------eeHHHHHHHHHHHHHHHHHhcCcc
Confidence 888899999975 4333 33679999999999997 42 3666666653
Q ss_pred ------------CCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 518 ------------LLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 518 ------------~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
+.++++|+|+++. ...++.+|||+.+.+.+.
T Consensus 459 ~~~~~~~~~a~~vg~~AvRy~~L~~-~~~~~~~Fd~d~~~~~~~ 501 (629)
T 2zue_A 459 LSDEEKAEVAEKVGIGAIRYNLIKY-SPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSS-CTTSCEECCHHHHSCCSS
T ss_pred cchhhHHHHHHhcChhHhhHHHHhc-CCCCCCeecHHHHHHHhc
Confidence 7889999999986 779999999999986654
|
| >2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=176.53 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=111.8
Q ss_pred CcHHHHHHHH----HhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC-C---CCCCCH
Q 043341 50 SPPLLVIAAA----KLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-N---FYGQNA 106 (758)
Q Consensus 50 ~~~~~v~i~l----~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~---L~p~~~ 106 (758)
|+++++++++ +++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ . |+|.++
T Consensus 41 P~~~rv~~~L~ll~~~~gi~ye~~~v~~~~~~~~~~~~nP~gkVPvL~d-~g~~l~ES~aI~~YL~~~~~~~~~L~p~~~ 119 (260)
T 2yv7_A 41 LFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILID-NGLAILENEKIERHIMKNIPGGYNLFVQDK 119 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEECTTSCC-----CCTTCCSCEEEE-TTEEECSHHHHHHHHHHHSTTHHHHSCCCH
T ss_pred hHHHHHHHHHHhHHHhcCCCceEEEeccccCCHHHHhhCCCCCCCEEEE-CCEEEeCHHHHHHHHHHhCCCCcccCCCCH
Confidence 6788999999 899999998543 99999987 8999999999999999998 3 788775
Q ss_pred HHHHHHHH-----HHHhccccCC--hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhcc---ccccccc
Q 043341 107 YEAGEIDE-----WLDYTPVFSS--GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQR---WDSLRKS 174 (758)
Q Consensus 107 ~era~v~~-----wl~~~~~~l~--~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~---~~~~~~~ 174 (758)
.. +.+.. +..+...... .+.+...|+.||++|+. ++||+|+++|+|||++++.+.++... ..+....
T Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~~~fl~Gd~~T~ADi~l~~~l~~l~~~~~~~~~~~~~ 198 (260)
T 2yv7_A 120 EV-ATLIENLYVKLKLMLVKKDEAKNNALLSHLRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIP 198 (260)
T ss_dssp HH-HHHHTTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HH-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33 32221 2222221111 25688899999999985 79999999999999999988765211 1222223
Q ss_pred ccChhHHHHHHHHHhhccchHHHHH
Q 043341 175 KKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 175 ~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..||+|.+|+++|.++ |+|+++.
T Consensus 199 ~~~P~l~~w~~ri~~r--P~~~~~~ 221 (260)
T 2yv7_A 199 THLTALWRYMYHMYQL--DAFTQSC 221 (260)
T ss_dssp TTCHHHHHHHHHHHTC--HHHHHHC
T ss_pred ccCHHHHHHHHHHhcC--HHHHHhC
Confidence 6799999999999999 9999874
|
| >3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=176.45 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=115.0
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--C----CCCCC
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--N----FYGQN 105 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~----L~p~~ 105 (758)
+.||++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ . +.+.+
T Consensus 40 ~~sP~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~VPvL~~-dg~~l~ES~aI~~YL~~~~~~~~~p~l~~~~ 118 (250)
T 3fy7_A 40 GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLY-DSDAKTDTLQIEDFLEETLGPPDFPSLAPRY 118 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEEC--------------CCSCEEEE-TTEEECCHHHHHHHHHHHSCTTTSCCCCCSS
T ss_pred CCChHHHHHHHHHHHcCCccEEEECCCccChHHHHhhCCCCCCCEEEE-CCEEecCHHHHHHHHHHHcCCCCCCcccccc
Confidence 5688899999999999999998643 99999997 8999999999999999998 2 44555
Q ss_pred HHHHHHHHHHHH----hccccCC------hHHHHHHHHHHHHhcc----------------cCCcccCCCCCHhHHHHHH
Q 043341 106 AYEAGEIDEWLD----YTPVFSS------GSEFENACTYVDKYLE----------------RRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 106 ~~era~v~~wl~----~~~~~l~------~~~l~~~L~~Le~~L~----------------~~~flvG~~lTlADi~l~~ 159 (758)
+..++....|.. +....-. .+.+...|+.||++|+ +++||+|+++|+|||++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~l~~~~~~~~~~~~~~~~fl~G~~~T~ADi~l~~ 198 (250)
T 3fy7_A 119 RESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLP 198 (250)
T ss_dssp HHHHHTTTTHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCCHHHHHHCTTCCSCCCSSSSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCccccCCCCchhhHHHHH
Confidence 544432222221 1111000 1567888999999998 7899999999999999999
Q ss_pred HHhhhhc---ccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 160 ALAGTGQ---RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 160 ~L~~l~~---~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
.+.++.. ...+......||+|.+|+++|.++ |+|++++
T Consensus 199 ~l~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~--p~~~~~~ 239 (250)
T 3fy7_A 199 KLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQE--KEFKYTC 239 (250)
T ss_dssp HHHHHHHHHHHHHSCCCCTTCHHHHHHHHHHHTS--HHHHTTC
T ss_pred HHHHHHHHHHHHcCCCChhhhHHHHHHHHHHhcC--hhhhhhC
Confidence 9998532 112333347899999999999999 9998764
|
| >1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-18 Score=178.40 Aligned_cols=151 Identities=13% Similarity=0.202 Sum_probs=120.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCC-C--cEEechHHHHHHHH----
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSN-G--SKLQGTYVLLRYIG---- 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~-g--~~l~ES~aIl~yL~---- 96 (758)
|.|+|| +++.|++|++++++|+++|++|+.+.+ |+||+|++++ | .+|+||.+|++||+
T Consensus 13 ~~~~Ly--~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~yL~~~~~ 90 (290)
T 1z9h_A 13 LQLTLY--QYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLV 90 (290)
T ss_dssp CEEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTCGGGTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHHHHHH
T ss_pred CCEEEE--eCCCChHHHHHHHHHHHcCCCeEEEECChhhHHHHHHcCCCCCCEEEECCCCCeEEecCHHHHHHHHHHHhc
Confidence 558999 888899999999999999999987543 8999999854 3 79999999999999
Q ss_pred H---------hC-C------------------CCCCCH----------HHHHHHHHHHHhccccCCh-------------
Q 043341 97 R---------VG-N------------------FYGQNA----------YEAGEIDEWLDYTPVFSSG------------- 125 (758)
Q Consensus 97 ~---------~~-~------------------L~p~~~----------~era~v~~wl~~~~~~l~~------------- 125 (758)
+ .+ . |+|.++ .+++++++|+.|....+..
T Consensus 91 ~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ra~~~~w~~~~~~~l~~~~~~~~~~~~~~~ 170 (290)
T 1z9h_A 91 SGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVYSGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEA 170 (290)
T ss_dssp HCCCHHHHGGGSCEEEEECTTSCEEEEETTTTCCCCCHHHHHHHCSSHHHHHHHHHHHHHHHHTTGGGHHHHHSSSHHHH
T ss_pred cccccccccccCCCcccccchhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHhhhhHhhhhHHhhcchHHH
Confidence 4 45 2 888875 3488999998887653220
Q ss_pred --------------------------------------------HHHHHHHHHHHHhc----ccCCcccCCCCCHhHHHH
Q 043341 126 --------------------------------------------SEFENACTYVDKYL----ERRTFVVGHSLSIVDIAI 157 (758)
Q Consensus 126 --------------------------------------------~~l~~~L~~Le~~L----~~~~flvG~~lTlADi~l 157 (758)
..+...++.||++| ++++||+|+++|+|||++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~l~~~~yl~Gd~~T~ADi~~ 250 (290)
T 1z9h_A 171 LASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAV 250 (290)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHCSSCSBTTBTSCCHHHHHH
T ss_pred HHHHhhhhcccccchHHHHHHHHhhHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHH
Confidence 01156678889988 788999999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++.+.++... ........||+|.+|+++|.++
T Consensus 251 ~~~l~~~~~~-~~~~~~~~~P~l~~w~~r~~~r 282 (290)
T 1z9h_A 251 YGVLRVMEGL-DAFDDLMQHTHIQPWYLRVERA 282 (290)
T ss_dssp HHHHHTTTTS-HHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHcc-cchhhhhhChHHHHHHHHHHHh
Confidence 9999876221 1112356899999999999988
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=188.90 Aligned_cols=273 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+++=-.|+|||++||||||++++.+.+|| .+.|.-++++.++| +....+++.+.|.+++++
T Consensus 14 ~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 93 (524)
T 2x1l_A 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEK 93 (524)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 366777899999999999999999999999 46788888887777 334456789999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCceecc-----CCchH-HHHHHhc--C---CCCCc-CCCCCHH-------
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAYVD-----DTPRE-QMQKERM--D---GIESK-CRNNSIE------- 369 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~~-----~~~~e-~~~~~~~--~---~~~~~-~r~~~~~------- 369 (758)
|||.+|..+++|+ +.+.+++++++|.++|++|.. .|... .+-.... . |..|. ..+.+++
T Consensus 94 lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qw 173 (524)
T 2x1l_A 94 LNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTY 173 (524)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEE
T ss_pred cCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCe
Confidence 9999998888988 999999999999999999822 11110 0000000 0 11111 1111221
Q ss_pred -----HHH-HHHHHHhcCccCCceeeEE---eeecCC-CCCCCCCCcEEEEeCCCCCcccCCc-----------c-----
Q 043341 370 -----ENM-KLWKEMIAGSERGLECCLR---GKLDMQ-DPNKSLRDPVYYRCNPIPHHRIGSK-----------Y----- 423 (758)
Q Consensus 370 -----~~~-~~~~~~~~g~~~~~~~~~R---~k~~~~-~~~~~~~D~vl~R~~~~~~~~~~~~-----------~----- 423 (758)
... ++.+...++. ..+. .|-.+. .-...++|+.+.|... .||.+ |
T Consensus 174 F~~l~~~~~~l~~~~~~~~-----~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~----~WG~~iP~~~~~~~yvWfds~~ 244 (524)
T 2x1l_A 174 FFRLSAYTDRLLALYEEHP-----EFIGPDARRNEIVSFVSGGLKDLSISRTTF----DWGVPVPDHPDHVMYVWVDALT 244 (524)
T ss_dssp EECGGGSHHHHHHHHHHCG-----GGEESHHHHHHHHHHHTTCCCCEECEESSC----CSSCEETTEEEEEECHHHHHHT
T ss_pred EeeHHHHHHHHHHHHHhCC-----CeeCCHHHHHHHHHHHHcCCcccceECCCC----CcCccCCCCCCCEEEEecCCch
Confidence 000 0000010010 0000 000000 0013578999999631 12322 1
Q ss_pred -----ccccccccccc--ccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhhhhhh
Q 043341 424 -----KVYPTYDFACP--FVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKLLWFV 494 (758)
Q Consensus 424 -----~~~PtY~~a~~--vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~~~li 494 (758)
.|||. .|. ... ...++.-+-|.|++ .|......++.++|++.| .++.|+++...|+|||||+++
T Consensus 245 ~~~~~~g~p~---~~~~~~~~-~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN--- 317 (524)
T 2x1l_A 245 NYLTGVGFPD---TESESFRR-YWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN--- 317 (524)
T ss_dssp HHHHTTTTTC---TTSHHHHH-HCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE---
T ss_pred HHHHHcCCCC---CchHHHHh-hCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC---
Confidence 11221 010 000 01233333477765 233333345667798776 678889999999999999974
Q ss_pred hcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 495 QNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 495 ~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
..++.++.+. ++++++|.|+++.+...++.+|+++.+....+.
T Consensus 318 ------------~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 318 ------------VVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp ------------SSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred ------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 3477888887 999999999999778899999999999876654
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=215.15 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=136.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| |++.++++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 2 mkLy--Y~~~s~~a~kVrl~L~e~Gl~ye~~~vd~~~~e~~~~~e~l~iNP~GkVPvLvD-dg~vL~ES~AIl~YLa~k~ 78 (2695)
T 4akg_A 2 PILG--YWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYID-GDVKLTQSMAIIRYIADKH 78 (2695)
T ss_dssp CEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEES-SSCEEESHHHHHHHHHHTT
T ss_pred cEEE--EcCCChhHHHHHHHHHHcCCCcEEEEeCCCcccccCCHhHHhhCCCCCCCEEEE-CCEEEECHHHHHHHHHHhC
Confidence 6899 999999999999999999999997532 99999985 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+|.++.+++++++|......... .+.+...|+.||++|++++|++|+++|+||+++++.+
T Consensus 79 ~L~P~d~~erA~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~LE~~L~~~~yLvGd~~TlADI~l~~~L 158 (2695)
T 4akg_A 79 NMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDAL 158 (2695)
T ss_dssp SCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCHHHHHHHHHH
Confidence 9999999999999999765443211 1567889999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
.++.... ....+.||+|.+|+++|.++ |++++++++-
T Consensus 159 ~~l~~~~--~~~l~~~P~L~aw~~rv~ar--Pa~k~~l~~~ 195 (2695)
T 4akg_A 159 DVVLYMD--PMCLDAFPKLVCFKKRIEAI--PQIDKYLKSS 195 (2695)
T ss_dssp HHHHHHC--TTSSTTCHHHHHHHHHHHHS--HHHHHHHTST
T ss_pred HHHHHhC--ccccccChHHHHHHHHHHCC--HHHHHHHhhc
Confidence 9863221 12357899999999999999 9999998753
|
| >2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=174.75 Aligned_cols=149 Identities=9% Similarity=0.098 Sum_probs=112.1
Q ss_pred CCcHHHHHHHH----HhcCCCeeeeec-------------CCccEEEeC-CCcEEechHHHHHHHHHh-----CCCCCCC
Q 043341 49 DSPPLLVIAAA----KLAGITIPTETS-------------GSAPTFSFS-NGSKLQGTYVLLRYIGRV-----GNFYGQN 105 (758)
Q Consensus 49 s~~~~~v~i~l----~~~gl~~~~~~~-------------g~vP~L~~~-~g~~l~ES~aIl~yL~~~-----~~L~p~~ 105 (758)
||+++++++++ +++|++|+.+.+ |+||+|+++ ||.+|+||.||++||++. ++|+|.+
T Consensus 37 cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~pfl~~nP~GkVPvL~d~~~g~~l~ES~aI~~YL~~~~~~~~~pL~p~d 116 (291)
T 2yv9_A 37 DLFCQEFWMELYALYEIGVARVEVKTVNVNSEAFKKNFLGAQPPIMIEEEKELTYTDNREIEGRIFHLAKEFNVPLFEKD 116 (291)
T ss_dssp CHHHHHHHHHHHHHHHTTSCEEEEEEECTTCHHHHHHHTTCCSCEEEEGGGTEEECSHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred ChHHHHHHHHHHHHHHhcCceeEEEEeCCCChhHHhcCCCCCCCEEEEcCCCeEEeCHHHHHHHHHHhhhccCCCCCCCC
Confidence 46688999999 899999998642 999999875 789999999999999995 3789987
Q ss_pred HHHHHHHHH----HHHhccc---cC------------C------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHH
Q 043341 106 AYEAGEIDE----WLDYTPV---FS------------S------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 106 ~~era~v~~----wl~~~~~---~l------------~------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~ 158 (758)
+..+..+.. +..+... .. . .+.+...|+.||++|+. ++||+|+++|+|||+++
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~~~yl~Gd~~TlADi~l~ 196 (291)
T 2yv9_A 117 PSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQLLSERKSRYLLGNSMTEYDCELM 196 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCeecCCCCcHHHHHHH
Confidence 654332221 1122110 00 1 15678889999999984 59999999999999999
Q ss_pred HHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 159 SALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 159 ~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+.+.++... ..+......||+|.+|+++|.++ |+|+++.
T Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~P~l~aw~~r~~~r--Pa~~~~~ 238 (291)
T 2yv9_A 197 PRLHHIRIIGLSLLGFDIPHNFTHLWAYILTAYRT--AAFIESC 238 (291)
T ss_dssp HHHHHHHHHHHHTTSCCSCTTCHHHHHHHHHHTTC--HHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHCC--hhHHHhC
Confidence 988765211 12233236799999999999999 9998864
|
| >3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=176.26 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=120.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeee----e--------------------------------e-------cC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPT----E--------------------------------T-------SG--- 72 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~----~--------------------------------~-------~g--- 72 (758)
|+|| ....||++.|++|+++++|++..+ + . .|
T Consensus 78 y~Ly--~s~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~~nP~g~gr 155 (352)
T 3ppu_A 78 YHLY--VSYACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKVKPDYDGR 155 (352)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHHHCTTCCSC
T ss_pred EEEE--EeCCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHHhCCCCCCC
Confidence 7999 888999999999999999995211 0 0 05
Q ss_pred -CccEEEeC--CCcEEechHHHHHHHHHhC-----------CCCCCCHHHHHHHHHHHHhccccCC--------------
Q 043341 73 -SAPTFSFS--NGSKLQGTYVLLRYIGRVG-----------NFYGQNAYEAGEIDEWLDYTPVFSS-------------- 124 (758)
Q Consensus 73 -~vP~L~~~--~g~~l~ES~aIl~yL~~~~-----------~L~p~~~~era~v~~wl~~~~~~l~-------------- 124 (758)
+||+|++. ++.+++||.+|++||++.+ .|+|.++.+ ++++|+.|....+.
T Consensus 156 ~kVPvL~d~~~g~~vl~ES~aI~~YL~~~f~~l~~~~~~~~~L~P~d~~~--~id~~~~~i~~~~~~~vy~~~f~~~~~~ 233 (352)
T 3ppu_A 156 FTVPVLWDKHTGTIVNNESSEIIRMFNTAFNHLLPEDKAKLDLYPESLRA--KIDEVNDWVYDTVNNGVYKSGFASTQKA 233 (352)
T ss_dssp CCSCEEEETTTTEEEECCHHHHHHHHHHTTGGGSCHHHHHCCSSCGGGHH--HHHHHHHHHHHHTTTHHHHHHHCCSHHH
T ss_pred eeeeEEEEeCCCCEEEecHHHHHHHHHHhcccccccccCCCCCCCcCHHH--HHHHHHHHHHHHHhHHHHHhhccCCHHH
Confidence 99999973 5578999999999999876 388987654 45555554433222
Q ss_pred ----hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccc-----ccc-ccccChhHHHHHHHHH-hhccc
Q 043341 125 ----GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD-----SLR-KSKKYQNLVRWFNSLS-AEYSD 193 (758)
Q Consensus 125 ----~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~-----~~~-~~~~~P~L~rW~~~i~-~~~~p 193 (758)
.+.+...|+.||.+|++++||+|+++|+|||++|++|.++..... +.. ....||+|.+|+++|. ++ |
T Consensus 234 ~e~a~~~l~~~L~~LE~~L~~~~yL~Gd~lTlADi~l~~~L~r~~~v~~~~fk~~~~~~~~~~P~L~~w~~rl~~~r--P 311 (352)
T 3ppu_A 234 YEAAVIPLFESLDRLEKMLEGQDYLIGGQLTEADIRLFVTIVRFDPVYVTHFKCNLRTIRDGYPNLHRWMRKLYWGN--P 311 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSSSSTTSCCHHHHHHHHHHTTTTTTHHHHSCCCSSCHHHHCHHHHHHHHHHHHHC--H
T ss_pred HHHHHHHHHHHHHHHHHHhccCcCccCCCCCHHHHHHHHHHHHHHHHhhhhhccccccchhhCHHHHHHHHHHHHhC--H
Confidence 146778899999999999999999999999999999988633221 111 2357999999999999 99 9
Q ss_pred hHHHHHH
Q 043341 194 SLDEVTA 200 (758)
Q Consensus 194 ~~~~~l~ 200 (758)
+|++++.
T Consensus 312 a~~~t~~ 318 (352)
T 3ppu_A 312 AFKDTCN 318 (352)
T ss_dssp HHHTTCC
T ss_pred HHHHHhC
Confidence 9988753
|
| >4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=164.03 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=99.8
Q ss_pred ccCCCCcHHHHHHHHHhcCCCeeeeec--------------------------CCccEEEeC-CCcEEechHHHHHHHHH
Q 043341 45 SFPADSPPLLVIAAAKLAGITIPTETS--------------------------GSAPTFSFS-NGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 45 ~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------------------g~vP~L~~~-~g~~l~ES~aIl~yL~~ 97 (758)
+.+.||+|++||++|.++|++|+.+.+ |+||+|+++ ||.+|+||.+|++||++
T Consensus 18 ~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~g~~l~ES~aI~~YL~~ 97 (253)
T 4f03_A 18 HSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDE 97 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHTCCCSEECTTCCEECCSCEEEETTTTEEEESHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHcCCCCEEEEEccccchhhhhhcCCCCchhhHhhCCCCccCeEEeCCCCEEEecHHHHHHHHHH
Confidence 456689999999999999999997532 799999975 58999999999999999
Q ss_pred hC---CC-CCCC--HHHHHHHHHHHHhccccC------------C---------------------------hHHHHHHH
Q 043341 98 VG---NF-YGQN--AYEAGEIDEWLDYTPVFS------------S---------------------------GSEFENAC 132 (758)
Q Consensus 98 ~~---~L-~p~~--~~era~v~~wl~~~~~~l------------~---------------------------~~~l~~~L 132 (758)
+| .+ +|.+ ..+++.++.|........ . .+.+...+
T Consensus 98 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (253)
T 4f03_A 98 TYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGL 177 (253)
T ss_dssp HCTTSCCSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCGGGTCCHHHHHHHHHHH
T ss_pred hCCCCcCCCCCchHHHHHHHHHHhhhhhhhchhhHHHHHHHhhcchhhHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence 98 34 4422 233444444433221110 0 03455667
Q ss_pred HHHHHhcc-----cCCcccCCC--CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHH
Q 043341 133 TYVDKYLE-----RRTFVVGHS--LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186 (758)
Q Consensus 133 ~~Le~~L~-----~~~flvG~~--lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~ 186 (758)
..|+.+|. +++|++|++ +|+|||++++.+.++... .+. ..+.+|+|.+|.+.
T Consensus 178 ~~l~~~L~~~~~~~~~~l~Gd~~~~s~ADi~~~~~l~~~~~~-~~~-~~~~~~~l~~W~dg 236 (253)
T 4f03_A 178 AKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKII-WGE-GSEKWKRLISLHDG 236 (253)
T ss_dssp HHHHHHHHTTCTTSTTSTTCTTSCCCHHHHHHHHHHHHHHHH-HCT-TSHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCCeEeCCCCCcCHhHHHHHHHHHHHHHH-cCC-ChhHCHHHHHHccc
Confidence 77777763 458999986 999999999999986322 222 24679999999874
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-17 Score=185.90 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=170.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~ 310 (758)
-++|--.|+|||++||||+|++++.+.+|| +|+..|+..+||.+. +...+++.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 488888999999999999999999999998 567778888887763 33456788999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCchHHHHHHh-cCC---CCCcC----CC-CCHHHHH
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPREQMQKER-MDG---IESKC----RN-NSIEENM 372 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~-~~~---~~~~~----r~-~~~~~~~ 372 (758)
|||.+|.++++++ +.+.+++++++|.++|++|. |......+.... ..+ .+..| +. .+++.
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~-- 185 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTW-- 185 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEE--
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEE--
Confidence 9999997777774 88899999999999999982 211111011100 001 11122 11 11110
Q ss_pred HHHHHHhcCccCCceeeEEeeecCC----------C----------------CCCCCCCcEEEE---eCCCCCcccCCcc
Q 043341 373 KLWKEMIAGSERGLECCLRGKLDMQ----------D----------------PNKSLRDPVYYR---CNPIPHHRIGSKY 423 (758)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~R~k~~~~----------~----------------~~~~~~D~vl~R---~~~~~~~~~~~~~ 423 (758)
-.+..+-+|++.- . -...++|+.|-| .+. .||-+.
T Consensus 186 ------------~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~----~WGipi 249 (564)
T 3kfl_A 186 ------------VEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVM----NWSIPV 249 (564)
T ss_dssp ------------EEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGT----TCSCEE
T ss_pred ------------EecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCC----CCCeec
Confidence 0000111111100 0 012578999999 232 233222
Q ss_pred ccc------------cccccccc---cc---------cc--ccC---ccEEeeCCCCCC-chHHHHHHHHHhCCCcc-eE
Q 043341 424 KVY------------PTYDFACP---FV---------DA--KEG---ITHALRSSEYHD-RNAQYYRIQEDLGVRKV-HI 472 (758)
Q Consensus 424 ~~~------------PtY~~a~~---vd---------D~--~~g---ithvirg~d~~~-~~~~~~~l~~alg~~~p-~~ 472 (758)
.+. .+| ++.. -+ |. ... --|++ |.|++. |+-....++.++|++.| .+
T Consensus 250 P~~~~~v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~-GkDii~FH~~~wpa~L~a~g~~~~~~v 327 (564)
T 3kfl_A 250 PGDERHCIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVV-GKDILKFHAIYWPAFLMSAELPLPERL 327 (564)
T ss_dssp TTEEEEEECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE-EGGGHHHHHTHHHHHHHHTTCCCCSCE
T ss_pred CCCCCCEEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEE-eecccchHHHHHHHHHHhCCCCCCcEE
Confidence 111 111 1110 00 01 000 12333 888764 44444456788898877 45
Q ss_pred eeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHhh
Q 043341 473 YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKKI 551 (758)
Q Consensus 473 ~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~~ 551 (758)
..++++..+|+|||||+++ ..++.++.+. ++++++|.|++..+...++.+|+++.+... |.+.
T Consensus 328 ~~hg~v~~~G~KMSKS~GN---------------vV~p~d~i~~-~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l 391 (564)
T 3kfl_A 328 VSHGWWTKDHKKISKSLGN---------------AFDPVEKAKE-FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGEL 391 (564)
T ss_dssp EEECCEEETTEECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTT
T ss_pred EEcccEeeCCccccccCCC---------------CCCHHHHHHH-cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHH
Confidence 5668999999999999963 3477788887 899999999998778889999999999874 5444
Q ss_pred c
Q 043341 552 I 552 (758)
Q Consensus 552 l 552 (758)
+
T Consensus 392 ~ 392 (564)
T 3kfl_A 392 A 392 (564)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >4fqu_A Putative glutathione transferase; glutathionyl-hydroquinone reductases, oxidoredu; 3.00A {Sphingobium chlorophenolicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=166.94 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=123.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCC----eeeeec----------------------------------------CCc
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGIT----IPTETS----------------------------------------GSA 74 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~----~~~~~~----------------------------------------g~v 74 (758)
..|| ....||++.|++|+++++|++ +.++.. .+|
T Consensus 45 y~Ly--~s~~CPwAhR~~I~r~lKGLe~~I~~~vv~~~~~~~~w~F~~~~~~~~dp~~g~~~l~e~Y~~~~p~y~gr~tV 122 (313)
T 4fqu_A 45 YHLY--AGFACPWAHRVLIMRALKGLEEMISVSMVNAYMGENGWTFLPGDDVVPDSINGADYLYQVYTAADPTYTGRVTI 122 (313)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCCSCTTCBCCTTTCCSBTHHHHHHHCTTCCBCCCS
T ss_pred EEEE--EecCCcHHHHHHHHHHHcCCCcceeEEEeCCccCCCCceecCCCCCCCCCCcccchHHHHHHhhCCCCCCCcee
Confidence 6888 778899999999999999974 322110 479
Q ss_pred cEEEeC-CCcEEe-chHHHHHHHHHhC---CCCCCCH---HHHHHHHHHHHhccccCCh------------------HHH
Q 043341 75 PTFSFS-NGSKLQ-GTYVLLRYIGRVG---NFYGQNA---YEAGEIDEWLDYTPVFSSG------------------SEF 128 (758)
Q Consensus 75 P~L~~~-~g~~l~-ES~aIl~yL~~~~---~L~p~~~---~era~v~~wl~~~~~~l~~------------------~~l 128 (758)
|+|.+. .|.++. ||.+|++||++.+ .+.|.++ ..|+++++|++|....+.. ..+
T Consensus 123 PvL~D~~~~~IV~nES~~IiryL~~~f~~~~~~p~Dlyp~alR~~id~~~~~i~~~in~gvy~~gfa~~qeaye~a~~~l 202 (313)
T 4fqu_A 123 PILWDKVEKRILNNESSEIIRILNSAFDDVGALPGDYYPAEFRPEIDRINARVYETLNNGVYRSGFATTQEAYEEAFYPL 202 (313)
T ss_dssp CEEEETTTTEEEECCHHHHHHHHHSTTGGGTCCCCCSSCGGGHHHHHHHHHHHHHHTTTHHHHHHTCCSHHHHHHHHHHH
T ss_pred eEEEECCCCcEeecCHHHHHHHHHhhcCCcCCCCCCcCcHHHHHHHHHHHHhhhHhHhHHHHHhhhcCCHHHHHHHHHHH
Confidence 999974 466665 9999999999998 4455442 3589999999988766552 567
Q ss_pred HHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccc-----cccccccChhHHHHHHHHHhhccchHHHH
Q 043341 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD-----SLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 129 ~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~-----~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
...|+.||++|++++||+|+++|+|||++|++|.++..... ....+..||||.+|+++|.++ |+|++.
T Consensus 203 ~~~Ld~LE~~L~~~~yl~Gd~~T~ADi~l~ptL~Rfd~vy~~~fk~n~~~i~dyP~L~~w~~~l~~~--P~~~~T 275 (313)
T 4fqu_A 203 FDTLDWLEEHLTGREWLVGDRLTEADIRLFPTLVRFDAIYHGHFKCNLRRIADYPNLSRLVGKLASH--ERVAPT 275 (313)
T ss_dssp HHHHHHHHHHTTTCSSSBTTBCCHHHHHHHHHHHHHTTTHHHHTCCCSSCGGGCHHHHHHHHHHHHS--TTTGGG
T ss_pred HHHHHHHHHHhccCCcCCCCCCcHHHHHHHHHHHHHhhhhhhhhccccCccccChHHHHHHHHHhcC--hHHHhH
Confidence 77899999999999999999999999999999987633221 112356799999999999999 999875
|
| >4g0i_A Protein YQJG; glutathionyl-hydroquinone reductase, oxidoreductase; HET: MES; 2.05A {Escherichia coli} PDB: 3r3e_A* 4g0k_A* 4g0l_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=164.71 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=122.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCC----eeeee---------------------c--------------------CC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGIT----IPTET---------------------S--------------------GS 73 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~----~~~~~---------------------~--------------------g~ 73 (758)
..|| ....||++.|++|+++++|++ +.++. + ++
T Consensus 55 y~Ly--~s~~CPwAhR~~I~~~lkGLe~~I~~~vv~~~~~~~gW~f~~~~~g~~~d~~~~~~~l~e~Y~~~~p~y~gr~t 132 (328)
T 4g0i_A 55 YHLY--VSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVT 132 (328)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHTTCTTTEEEEECCSCCBTTBSBCCCCSTTCCCCTTTCCSBHHHHHHHHCTTCCBCCC
T ss_pred EEEE--EeCCCcHHHHHHHHHHHhCCCcceeEEEeCCccCCCCCcccCCCCCCCCCcccCcchHHHHHHhhCCCCCCCce
Confidence 6888 788899999999999999974 22110 0 58
Q ss_pred ccEEEeC-CCcEEe-chHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHhccccCCh------------------
Q 043341 74 APTFSFS-NGSKLQ-GTYVLLRYIGRVG--------NFYGQNAYEAGEIDEWLDYTPVFSSG------------------ 125 (758)
Q Consensus 74 vP~L~~~-~g~~l~-ES~aIl~yL~~~~--------~L~p~~~~era~v~~wl~~~~~~l~~------------------ 125 (758)
||+|.+. .|.++. ||.+|++||++.+ .++| ...|+++++|.++....+..
T Consensus 133 VPvL~D~~~~~IV~nES~~IiryL~~~f~~~~~~~~Dlyp--~~lr~~Id~~~~~i~~~inngvy~~gfA~~qeaye~a~ 210 (328)
T 4g0i_A 133 VPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYP--PALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAV 210 (328)
T ss_dssp SCEEEETTTTEEEECCHHHHHHHHHHTTGGGTCCSCCSSC--GGGHHHHHHHHHHHHHHTTTTHHHHHTCCSHHHHHHHH
T ss_pred eeEEEECCCCcEEecCHHHHHHHHHHhcccccCCCCCCCC--HHHHHHHHHHHHHHHHHhhhhhhhccccCCHHHHHHHH
Confidence 9999974 456654 9999999999988 2344 34688999998887766552
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccccc-----ccccccChhHHHHHHHHHhhccchHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS-----LRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~-----~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
..+...|+.||++|+.++||+|+++|+|||++|++|.++...... ...+..||||.+|+++|.++ |+|++.
T Consensus 211 ~~l~~~Ld~LE~~La~~~YL~Gd~~TlADI~L~ptL~Rfd~vy~~~fk~n~~~i~dyP~L~~w~~~l~q~--P~~~~T 286 (328)
T 4g0i_A 211 AKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQM--PGIAET 286 (328)
T ss_dssp HHHHHHHHHHHHHTTTSSSSSSSSCCHHHHHHHHHHHHHTTTTTTTTCCCSCCGGGCHHHHHHHHHHHTS--TTTGGG
T ss_pred HHHHHHHHHHHHhhcCCCeecCCCCcHHHHHHHHHHHHHHhhhhhhcCCCccccccChHHHHHHHHHhcc--hHHHHh
Confidence 567788999999999999999999999999999999887433222 11246799999999999999 999876
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=174.59 Aligned_cols=280 Identities=13% Similarity=0.081 Sum_probs=161.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+||==.|+|||.||||||++.++.+.++| +..|.-++-+.++| |....++|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 67777799999999999999999999988 34465555555555 3334567899999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCchHHHHHHhc------CCCCC-cC-CC-CCHH----
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPREQMQKERM------DGIES-KC-RN-NSIE---- 369 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~~------~~~~~-~~-r~-~~~~---- 369 (758)
||.+|..+++++ +.+..+++..+|.++|++|. |..+..-+....- .|-.+ .| |. ..++
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~ 171 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSE 171 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeecc
Confidence 999997666654 77788999999999999992 2211000000000 00000 01 00 0000
Q ss_pred -----------HHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccc---
Q 043341 370 -----------ENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPF--- 435 (758)
Q Consensus 370 -----------~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~v--- 435 (758)
+.+..| ..++...-.+.. +-+.-...-...++|+.+-|... ..+.||-+..++|...+-+-+
T Consensus 172 ~~~f~~l~~~~~~l~~~--~~~~~~~~~P~~-~~~~~~~~~~~~l~Dw~ISRq~~-~~~~WGipiP~~~~~~~~vw~da~ 247 (542)
T 3u1f_A 172 ENYMFRLSAFRERLLEW--YHANPGCIVPEF-RRREVIRAVEKGLPDLSVSRARA-TLHNWAIPVPGNPDHXVYVWLDAL 247 (542)
T ss_dssp EEEEECGGGGHHHHHHH--HHHCTTSEESHH-HHHHHHHHHHHCCCCEECEEEGG-GGTTCSCEETTEEEEEECHHHHHH
T ss_pred ccceecchhHHHHHHHH--HhhcccccCCch-hhHhHhhhhhccccccCcccccc-CcCCCCCccCCCcCeeeeeeeccc
Confidence 100000 000000000000 00000000011367999888642 112355443222211110000
Q ss_pred ---------------------cccc----cCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-Eeeeeeeecccccccch
Q 043341 436 ---------------------VDAK----EGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKR 488 (758)
Q Consensus 436 ---------------------dD~~----~githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR 488 (758)
||.. .-.+.-+-|.|.. .|+......+.++|++.|. ++.+++|..+|+|||||
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hg~l~~~G~KMSKS 327 (542)
T 3u1f_A 248 TNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKS 327 (542)
T ss_dssp THHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCCEETTBCCBTT
T ss_pred hhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccccceeccccceecCCceeccc
Confidence 0000 0011112377754 2333334455667988775 44558899999999999
Q ss_pred hhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 489 KLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 489 ~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
+++ ..+..++.+. |++|++|.|+++.+...++..|+++.+....+
T Consensus 328 lGN---------------vi~p~~~i~~-ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 328 LGN---------------VFDPVEKAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp TTB---------------CCCHHHHHHH-HCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred cCC---------------CCChhHHHhh-cCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 974 3466777777 99999999999888889999999999876543
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-14 Score=165.73 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=76.4
Q ss_pred eeeccCCCCCCCccchhhHH-HHHHHHHHc-----ccCceEEEEecCCC-------------cccchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKA-ALLNQYFAQ-----RYQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~-al~n~~~Ar-----~~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~ 310 (758)
++|==+|+|||.+||||+++ .++.+.+|| +|+..|+.-+|+.. |.....++.+.|.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 67777899999999999998 888888887 34445555555543 444456789999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|||.+|.++++++ |.+..+++..+|.++|++|
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY 118 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLV 118 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999998777776 7788999999999999998
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.6e-14 Score=153.44 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=119.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----CCcccchH--------HHHHHHHHHHHHhCCCCC
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TNPAKESN--------EFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td~~r~~~--------~~~~~i~~dl~~LGi~~d 316 (758)
.|.++|.| ||.|||||+++|+.++.+++ .|+.++++|.| |+..+... .+.+.|..+|.|+|++|+
T Consensus 41 ~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 41 KLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp EEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred EEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 58999998 79999999999999999998 78999999999 65322111 244677888999999999
Q ss_pred C--cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 317 T--VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 317 ~--~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
. +++||++.. +.+++..+. .|.|.|+..++..... ...|.+
T Consensus 118 k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-------------------------------~~~r~~- 160 (394)
T 2dlc_X 118 KLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-------------------------------DVVKQV- 160 (394)
T ss_dssp TCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-------------------------------TTSCCC-
T ss_pred HcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-------------------------------hhhccc-
Confidence 4 788999853 223333333 5677777666553210 000100
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEee
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYE 474 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~ 474 (758)
+ +. -.|-.+|..-.+.|..+++++|+++|.|+..|...+..++..+|+..|...+
T Consensus 161 ----------~-------~~--------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~ 215 (394)
T 2dlc_X 161 ----------A-------NP--------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLM 215 (394)
T ss_dssp ----------S-------SC--------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEE
T ss_pred ----------C-------Cc--------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEEEe
Confidence 0 00 0123455555566777799999999999999999999999999998886665
Q ss_pred eeee-ecc-cccccchhhh
Q 043341 475 FSRL-NMV-YTLLSKRKLL 491 (758)
Q Consensus 475 ~~~l-~~~-~~klSKR~~~ 491 (758)
...| .+. |+|||||..+
T Consensus 216 ~pll~gl~~G~KMSKS~~n 234 (394)
T 2dlc_X 216 NPMVPGLAQGGKMSASDPN 234 (394)
T ss_dssp ECCCCCCC----------C
T ss_pred cccccCCCCCCcCCCCCCC
Confidence 5443 456 8899999853
|
| >2hsn_A Methionyl-tRNA synthetase, cytoplasmic; protein complex protein interaction GST-fold, ligase/RNA binding protein complex; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=131.08 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=101.1
Q ss_pred cHHHHHHHHHhcCCCeeeeec--CCccEEEeC-CCcEEechHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhccccCChHH
Q 043341 51 PPLLVIAAAKLAGITIPTETS--GSAPTFSFS-NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSE 127 (758)
Q Consensus 51 ~~~~v~i~l~~~gl~~~~~~~--g~vP~L~~~-~g~~l~ES~aIl~yL~~~~~L~p~~~~era~v~~wl~~~~~~l~~~~ 127 (758)
+++++.++|++.|++|+...- |++|+|+++ +|++|+||+||++||++.| -+.++.+++.+.+|+.|..-.-. .
T Consensus 21 N~~Kv~l~L~elgl~~el~~Npn~~vP~l~d~~~~~~l~esnAIl~YLa~~~--~~~~~~~~~~~~~Wl~~~~~~~e--a 96 (160)
T 2hsn_A 21 NNLKIALALEYASKNLKPEVDNDNAAMELRNTKEPFLLFDANAILRYVMDDF--EGQTSDKYQFALASLQNLLYHKE--L 96 (160)
T ss_dssp HHHHHHHHHHHCCSTTCCEECSSCCSCCEEECSCCSCCCCHHHHHHHHTTCC--TTTTSHHHHHHHHHTTTGGGSSS--C
T ss_pred cHHHHHHHHHHhCCCceeeeCCCCccceEeeCCCCeEEEchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccHH--H
Confidence 567899999999999996433 999999875 5899999999999999986 22677899999999998863211 2
Q ss_pred HHHHH-HHHHHhcccCCcc--cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccc-hHHHHHHhh
Q 043341 128 FENAC-TYVDKYLERRTFV--VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSD-SLDEVTATY 202 (758)
Q Consensus 128 l~~~L-~~Le~~L~~~~fl--vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p-~~~~~l~~~ 202 (758)
+.+.. ..||++|+ +|+ +|+.+|+|||++|+.++.... ... + ++|.++ | ++++++...
T Consensus 97 i~~~~~~vLd~~L~--~~L~~~G~~~tiADia~~~~~y~~~~--~~~---~---------~r~~a~--P~a~~~~~~~a 157 (160)
T 2hsn_A 97 PQQHVEVLTNKAIE--NYLVELKEPLTTTDLILFANVYALNS--SLV---H---------SKFPEL--PSKVHNAVALA 157 (160)
T ss_dssp CHHHHHHHHHHHHH--HTCSCCCSSCCHHHHHHHHHHHHHHH--HHH---H---------HHCSSC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHcCCCCCHHHHHHHHHHHHHcc--ccH---h---------HHHHhC--cHHHHHHHHHH
Confidence 22222 78999999 899 999999999999997774311 111 0 888888 9 898887653
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-11 Score=130.26 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=114.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----CC-cc------cchHHHHHH-HHHHHHHhCCCCC
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TN-PA------KESNEFVDN-LLKDIETLGIKYE 316 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td-~~------r~~~~~~~~-i~~dl~~LGi~~d 316 (758)
.|.++|. |||.|||||..+++.++.+.+ .|+.+++.|.| |+ +. +....+.+. +...|.|+|++++
T Consensus 37 ~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 37 KIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp EEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred EEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 5899999 679999999999999999987 78999999999 75 32 223445555 5556799999998
Q ss_pred --CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 317 --TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 317 --~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
.+++||++. ...+++..++. |.|.++..+++.. + ..+.|.+
T Consensus 114 k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~--------------------------~-----~~v~~~~- 156 (372)
T 1n3l_A 114 KLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKA--------------------------G-----AEVVKQV- 156 (372)
T ss_dssp TEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHH--------------------------T-----TTTSCCC-
T ss_pred hcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhc--------------------------h-----hhhhccc-
Confidence 578899984 22344444444 4455555444321 0 0000000
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEee
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYE 474 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~ 474 (758)
+ +. --|-.+|-.--+.|-.+.+.+||++|.|+..|.....-+++.+|+..|...+
T Consensus 157 ----------~-------~~--------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~ 211 (372)
T 1n3l_A 157 ----------E-------HP--------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLM 211 (372)
T ss_dssp ----------S-------SC--------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEE
T ss_pred ----------C-------CC--------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEEEe
Confidence 0 00 0022344333344444578999999999999999999999999998886555
Q ss_pred eeee-ecccccccchhhh
Q 043341 475 FSRL-NMVYTLLSKRKLL 491 (758)
Q Consensus 475 ~~~l-~~~~~klSKR~~~ 491 (758)
...| .+.|+|||||..+
T Consensus 212 ~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 212 NPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp ECCCCCSSCC-------C
T ss_pred cCccCCCCcccccCCCCC
Confidence 4433 4568999999854
|
| >2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2 PDB: 2hrk_B 2hsm_B 2hsn_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=111.64 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=70.6
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCC-CCHhHHHHHHHHhhhhccccc-----ccc
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHS-LSIVDIAIWSALAGTGQRWDS-----LRK 173 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~-lTlADi~l~~~L~~l~~~~~~-----~~~ 173 (758)
.+.|.++.+++++.+|+.|+.+.. ..+.|+.||++|+.++||+|++ +|+|||++|+.+..+...+.. ...
T Consensus 18 ~~~~~~~~e~a~V~qWl~fa~~~~----~~~~L~~Ld~~La~r~yL~G~~~~TiADiai~~~l~~~~~~~~~~d~~~~~~ 93 (124)
T 2hqt_A 18 YPVSFTKEQSAQAAQWESVLKSGQ----IQPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIKDLVASSKDVKST 93 (124)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTC----TGGGHHHHHHHHHHCSSTTSCSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHcCcc----HHHHHHHHHHHHccCCcccCCCCCCHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 456789999999999999998854 3778999999999999999999 999999999998753222211 112
Q ss_pred cccChhHHHHHHHHHhh
Q 043341 174 SKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 174 ~~~~P~L~rW~~~i~~~ 190 (758)
...||||.||+++|++.
T Consensus 94 ~~~ypnv~RW~~~i~~l 110 (124)
T 2hqt_A 94 YTTYRHILRWIDYMQNL 110 (124)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 46799999999999765
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-11 Score=128.24 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=127.4
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCCC--cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYET--VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d~--~~ 319 (758)
.|.+.|. |||.|||||+ .++.++...+..|+.+++.|.| ..+.....++.+.+.+++.++|++|+. +.
T Consensus 34 ~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~ 110 (323)
T 2cyb_A 34 RAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFV 110 (323)
T ss_dssp EEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEE
T ss_pred EEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 4667775 6799999997 6788999988889999999965 323446778889999999999999984 68
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCC
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~ 399 (758)
+||+.... .++++ ....|.|.++..++..... ..+ +
T Consensus 111 ~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~--------------------------~~~-------~------ 146 (323)
T 2cyb_A 111 LGSEYQLS-RDYVL----DVLKMARITTLNRARRSMD--------------------------EVS-------R------ 146 (323)
T ss_dssp EGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTT--------------------------TTC-------S------
T ss_pred Ecchhccc-hHHHH----HHHHHhCccCHHHHhccch--------------------------hhc-------c------
Confidence 89998632 12222 2223556666655543200 000 0
Q ss_pred CCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-
Q 043341 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL- 478 (758)
Q Consensus 400 ~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l- 478 (758)
. .+. .--|..+|.+..+.|+...+++||++|.|+..|......+.+.+|...|...++..|
T Consensus 147 ~-----------~~~-------~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~ 208 (323)
T 2cyb_A 147 R-----------KED-------PMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILV 208 (323)
T ss_dssp C-----------SSS-------CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCB
T ss_pred c-----------cCC-------CCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCccc
Confidence 0 000 001446777778888889999999999999999999999999999988866666554
Q ss_pred ecccccccchh
Q 043341 479 NMVYTLLSKRK 489 (758)
Q Consensus 479 ~~~~~klSKR~ 489 (758)
.+.|+|||||.
T Consensus 209 ~l~G~KMSKS~ 219 (323)
T 2cyb_A 209 GLDGQKMSSSK 219 (323)
T ss_dssp CTTSSBCCTTT
T ss_pred CCCCCcccCCc
Confidence 46789999996
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=135.57 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=68.3
Q ss_pred eeCCCCC-CchHHHHHHHHHh-CCCc-ceEeeeeeee-cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 446 LRSSEYH-DRNAQYYRIQEDL-GVRK-VHIYEFSRLN-MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 446 irg~d~~-~~~~~~~~l~~al-g~~~-p~~~~~~~l~-~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
+-|.||+ .+.....++..++ |..+ -.+|.|+++. ..|+|||||+++ ..+..++.++ |++|
T Consensus 549 ~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GN---------------vV~p~dli~~-yGaD 612 (821)
T 1ile_A 549 AEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGN---------------VVDPWDIIRK-FGAD 612 (821)
T ss_dssp EEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTC---------------CCCHHHHHTT-TCHH
T ss_pred cchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCC---------------CCCHHHHHHH-hCHH
Confidence 4477765 3333333333343 5533 3678888765 589999999973 4477888887 9999
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHhhcccc
Q 043341 522 ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPV 555 (758)
Q Consensus 522 al~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~ 555 (758)
++|.|+++.+...++..|+++.+...+++.++.+
T Consensus 613 alR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl 646 (821)
T 1ile_A 613 ALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTL 646 (821)
T ss_dssp HHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHH
Confidence 9999999988899999999999988655566544
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-08 Score=121.44 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=74.2
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC--------------------cccc-----------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN--------------------PAKE----------- 296 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd--------------------~~r~----------- 296 (758)
+++=-+|+|||.|||||+++.++.+.++| ...|.-++..-.+| +...
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 67777899999999999999999999998 46688888774443 1111
Q ss_pred -hHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 -SNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 -~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
..++.+.|.+.++.||+..| ..+++++ +.+..+.+..+|.++|++|
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliY 167 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAY 167 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 35678999999999998877 4444444 6777899999999999999
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=131.16 Aligned_cols=93 Identities=20% Similarity=0.324 Sum_probs=70.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------c-----c-------cchHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------P-----A-------KESNE 299 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~-----~-------r~~~~ 299 (758)
+++==+|+|||.||||||++.++.+.+|| ...|.-++..-.+| + + ....+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 44555699999999999999999999998 34566555552222 2 1 12346
Q ss_pred HHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+++.+.++++.||+. ||..+++++ +....+.+..+|.++|++|
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliY 177 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIY 177 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeE
Confidence 789999999999995 677777665 5566788899999999999
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-07 Score=107.49 Aligned_cols=93 Identities=25% Similarity=0.427 Sum_probs=73.2
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCCC-------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDTN-------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDtd-------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++=-+|+|||.|||||+|+.++.+.+|| ...|.-++.. |+.. +.....++++.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55556799999999999999999999998 3556666664 4433 3333446789999999999
Q ss_pred CCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+..| ..+++++ |....+++..+|.++|++|
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY 170 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVY 170 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 99887 5555544 6778899999999999999
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7e-07 Score=107.68 Aligned_cols=93 Identities=25% Similarity=0.363 Sum_probs=73.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCCC-------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDTN-------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDtd-------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++=-+|+|||.|||||+|+.++.+.+|| ...|.-++.. |+.. +.....++++.|.++|+.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55656799999999999999999999998 3446555554 4443 3334557889999999999
Q ss_pred CCCCC--Cccc--ccCCHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYE--TVTY--TSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d--~~~~--~S~~~~~~~~~~~~Li~~G~aY 342 (758)
|+..| ..++ .++|.+..+.+..+|.++|++|
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY 150 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 99887 4444 4457788899999999999999
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.6e-07 Score=106.67 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=73.8
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEec---CCCc------------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFD---DTNP------------------------------ 293 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRie---Dtd~------------------------------ 293 (758)
-+++--+|+|||.|||||+|+.++.+.+|| ...|.-++++- ++-.
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~ 115 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI 115 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence 488899999999999999999999999999 66788888852 2211
Q ss_pred -------ccchHHHHHHHHHHHHHhCCCCC--CcccccC----CHHHHHHHHHHHHHhCcee
Q 043341 294 -------AKESNEFVDNLLKDIETLGIKYE--TVTYTSD----YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 294 -------~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~----~~~~~~~~~~~Li~~G~aY 342 (758)
.....++.+.|.++|++||+..| ..+++++ |....+.+..+|.++|++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy 177 (810)
T 1wkb_A 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIV 177 (810)
T ss_dssp HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEE
Confidence 11223456889999999999887 5555555 4556788899999999998
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.2e-07 Score=97.99 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=114.4
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----CCc--cc---chHHHHHHHHHHHHHhCCCCC--C
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TNP--AK---ESNEFVDNLLKDIETLGIKYE--T 317 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td~--~r---~~~~~~~~i~~dl~~LGi~~d--~ 317 (758)
.+.+-|.| ||.||||| ..++.++..-...|..+++.|.| |++ .+ ...+....+..++.++|++++ .
T Consensus 37 ~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~ 113 (364)
T 2cya_A 37 KGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVR 113 (364)
T ss_dssp EEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCE
T ss_pred EEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 47788876 69999999 89999988888888999999987 322 12 344666788899999999998 4
Q ss_pred cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC
Q 043341 318 VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ 397 (758)
Q Consensus 318 ~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~ 397 (758)
+.+||+.... ..+...++. +.|.++..++.... .+.-|.
T Consensus 114 i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~r~~---------------------------------~~k~r~--- 152 (364)
T 2cya_A 114 FVDAEELASD-KDYWGLVIR----VAKRASLARVRRAL---------------------------------TIMGRR--- 152 (364)
T ss_dssp EEEHHHHHTC-HHHHHHHHH----HHHTSCHHHHHTTC------------------------------------------
T ss_pred EEecchhhcc-hHHHHHHHH----HHCcCcHHHHHcCc---------------------------------hhhhhh---
Confidence 7789987643 244444443 23444444433110 000011
Q ss_pred CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeee
Q 043341 398 DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSR 477 (758)
Q Consensus 398 ~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~ 477 (758)
... .+-. -+..+|-.--+.|=...+.++++.|.|...|.....-+...+|...|...+..+
T Consensus 153 --------------~~~----~~i~-~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~l 213 (364)
T 2cya_A 153 --------------AEE----AEVD-ASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPI 213 (364)
T ss_dssp --------------CCG----GGSC-THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECC
T ss_pred --------------cCC----CCcc-chhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeeccce
Confidence 000 0000 022333333333434578999999999999999888899999988887655554
Q ss_pred ee-cc-----------------cccccchh
Q 043341 478 LN-MV-----------------YTLLSKRK 489 (758)
Q Consensus 478 l~-~~-----------------~~klSKR~ 489 (758)
|+ +. ++|||||.
T Consensus 214 l~~l~g~~~~~~~~~~~~~~~~g~KMSKS~ 243 (364)
T 2cya_A 214 ISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243 (364)
T ss_dssp CBCSSCC----------------CBCCSSS
T ss_pred eeCCCcccccccccccccccccccccCCCC
Confidence 43 45 57999995
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=92.51 Aligned_cols=68 Identities=24% Similarity=0.142 Sum_probs=55.2
Q ss_pred CCCCccchhhHHHHHHHHHHcccCceEEEEecC----CCcc--cchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 258 PSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TNPA--KESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 258 PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td~~--r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
|||.|||||...++.+|..... +..+++.|.| |++. ....+....+..++-++|++++ .+++||+..+
T Consensus 10 PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~ 85 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPA 85 (328)
T ss_dssp CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTH
T ss_pred CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhh
Confidence 5699999999999999887655 7899999998 7432 2445667788899999999998 6788999865
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=92.35 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=108.4
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----C----CcccchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----T----NPAKESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----t----d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
+......|||.|||||...++.+|......|..+++-|.| | ||+. ..+....+..++.++|++++ .++.
T Consensus 14 ~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~if~ 92 (340)
T 2g36_A 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSVIFV 92 (340)
T ss_dssp EEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred eEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 3344445679999999999988888888788899999988 5 6664 56667777788889999998 6788
Q ss_pred ccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCC
Q 043341 321 TSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPN 400 (758)
Q Consensus 321 ~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~ 400 (758)
||+..+ +.+.+- .+.|.++..++...- + |+. ..-|++-
T Consensus 93 qS~~~~-~~el~~-------~l~~~~~v~~l~r~~-----------~-------~k~----------~~~r~~~------ 130 (340)
T 2g36_A 93 QSGVKE-HAELAL-------LFSMIVSVSRLERVP-----------T-------YKE----------IKSELNY------ 130 (340)
T ss_dssp GGGCTH-HHHHHH-------HHHTTSCHHHHHTCH-----------H-------HHT----------C------------
T ss_pred CCchHH-HHHHHH-------HHHccCCHHHHHHhH-----------H-------HHh----------HHHHhcc------
Confidence 999865 433322 233554544433110 0 000 0001100
Q ss_pred CCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC------CCcceEe-
Q 043341 401 KSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG------VRKVHIY- 473 (758)
Q Consensus 401 ~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg------~~~p~~~- 473 (758)
.| +. . -|..+|-.--+.|=.+.+.++|..|.|...|.....-+...++ ++.|..+
T Consensus 131 ---~~-------~~-------~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~ 192 (340)
T 2g36_A 131 ---KD-------LS-------T-AGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAIL 192 (340)
T ss_dssp ----C-------CC-------S-HHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEE
T ss_pred ---CC-------CC-------C-hHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhh
Confidence 00 00 0 0112222222233334689999999999999888877777664 2345422
Q ss_pred -eeeee-ecccccccchhh
Q 043341 474 -EFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 474 -~~~~l-~~~~~klSKR~~ 490 (758)
+..+| .+.|+|||||..
T Consensus 193 ~~~~~l~gldG~KMSKS~~ 211 (340)
T 2g36_A 193 SRVPKLPGTDGRKMSKSYG 211 (340)
T ss_dssp CCSCCCCCTTSSCCCGGGT
T ss_pred ccccccCCCCccccCCCCC
Confidence 12333 356889999984
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-06 Score=93.67 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=58.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
|.+=|- |||.|||||...++.+|..... +..+++.|.| .|++ ...+....+..++.++|++++ .+++
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445555 5699999999999998876665 7789999988 5665 455667778888999999999 6888
Q ss_pred ccCCHH
Q 043341 321 TSDYFP 326 (758)
Q Consensus 321 ~S~~~~ 326 (758)
||+..+
T Consensus 83 qS~~~~ 88 (348)
T 2yy5_A 83 QSDLLE 88 (348)
T ss_dssp GGGCHH
T ss_pred CCcccc
Confidence 999876
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-06 Score=88.14 Aligned_cols=84 Identities=26% Similarity=0.371 Sum_probs=66.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC-C---C---cccchHHHHHHHHHHHHHhCCCCCCcccc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD-T---N---PAKESNEFVDNLLKDIETLGIKYETVTYT 321 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD-t---d---~~r~~~~~~~~i~~dl~~LGi~~d~~~~~ 321 (758)
.+.+.|.| ||.||||| ..++.++...+..|..+++.|.| | . ..+...++...+..++.++|++ ..+++|
T Consensus 30 ~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~~~~q 105 (314)
T 2zp1_A 30 SAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AKYVYG 105 (314)
T ss_dssp EEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CEEEEG
T ss_pred EEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEEC
Confidence 58899998 58999999 99999999988888999999844 1 1 2345667788999999999999 677789
Q ss_pred cCCHHHHHHHHHHHHH
Q 043341 322 SDYFPDLMEMAENLIR 337 (758)
Q Consensus 322 S~~~~~~~~~~~~Li~ 337 (758)
|+.... .++...++.
T Consensus 106 s~~~~~-~~~~~~~~~ 120 (314)
T 2zp1_A 106 SEFQLD-KDYTLNVYR 120 (314)
T ss_dssp GGTTTS-HHHHHHHHH
T ss_pred Chhhcc-hHHHHHHHH
Confidence 998754 344555553
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-06 Score=88.85 Aligned_cols=182 Identities=17% Similarity=0.096 Sum_probs=107.4
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCC------cccchHHHHHHHHHHHHHhCCCCC--Ccc
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTN------PAKESNEFVDNLLKDIETLGIKYE--TVT 319 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd------~~r~~~~~~~~i~~dl~~LGi~~d--~~~ 319 (758)
..+.+.|.| ||.|||||...++.+|...+.....+++--|.+. ......+....+..++.++|++++ .++
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 358899997 6999999999999888655544344555444321 122445667778889999999998 677
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCC
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~ 399 (758)
.||+..+ +.++.- .|.|.++..++... .+ |+.+.+. .
T Consensus 101 ~qS~~~~-~~el~~-------~l~~~~~v~~l~r~-----------~~-------~k~~~~~--~--------------- 137 (351)
T 1yi8_B 101 VQSAVPE-LAELTV-------YFLNLVTVSHLRQN-----------PT-------VKAEIAQ--K--------------- 137 (351)
T ss_dssp EGGGCTH-HHHHHH-------HHHTTSBHHHHHTC-----------HH-------HHHHHHH--H---------------
T ss_pred EcCchhh-HHHHHH-------HHhccCCHHHHHhh-----------hH-------HHHHHhh--c---------------
Confidence 8999875 333321 24566665555421 01 1111100 0
Q ss_pred CCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh----C--CCcceEe
Q 043341 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL----G--VRKVHIY 473 (758)
Q Consensus 400 ~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al----g--~~~p~~~ 473 (758)
+| .++. . -|..+|-.--+.|=.+.+.++|+.|.|...|.....-+.+.+ | +..|...
T Consensus 138 -----~f----~~~~-------~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 138 -----GY----GERV-------P-AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp -----TC----TTCC-------B-HHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred -----CC----CCCC-------c-hHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 00 0000 0 011233222233333468999999999999988888777765 4 4456432
Q ss_pred e--eee-eecccc-cccchhhh
Q 043341 474 E--FSR-LNMVYT-LLSKRKLL 491 (758)
Q Consensus 474 ~--~~~-l~~~~~-klSKR~~~ 491 (758)
. ..+ ..+.|+ |||||..+
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2 223 335676 99999853
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=8.1e-06 Score=87.63 Aligned_cols=171 Identities=14% Similarity=0.019 Sum_probs=103.3
Q ss_pred CCCCccchhhHHHHHHHHHHcccC-ceEEEEecC----CC---cc-cchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 258 PSGYLHIGHSKAALLNQYFAQRYQ-GQLIVRFDD----TN---PA-KESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 258 PtG~lHiGhar~al~n~~~Ar~~~-G~~ilRieD----td---~~-r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
|||.|||||...++.+|......| .+.+.-|.| |+ +. ....+....+..++.++|++++ .++.||+..+
T Consensus 10 PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~ 89 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPE 89 (337)
T ss_dssp SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTH
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchh
Confidence 669999999998988888666666 678888877 22 21 2345677778888999999998 6788999875
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
+.+++.. +.|.++..++... .+ |+...++ .|
T Consensus 90 -~~el~~~-------l~~~~~~~~l~r~-----------~~-------~k~r~~~----------------------~~- 120 (337)
T 2el7_A 90 -HTELSWV-------FTTLTPLGDLTRM-----------TQ-------FKDKASK----------------------QE- 120 (337)
T ss_dssp -HHHHHHH-------HHHTSBHHHHHTS-----------HH-------HHHHTTS----------------------SS-
T ss_pred -hHHHHHH-------HHccCCHHHHHHh-----------HH-------HHHHhcc----------------------CC-
Confidence 4443321 3455544443311 00 1110000 00
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh----C--CCcceEeee---ee
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL----G--VRKVHIYEF---SR 477 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al----g--~~~p~~~~~---~~ 477 (758)
+. . -+..+|-.--+.|=.+.+.++++.|.|...|...-.-+...+ | +..|...+- .+
T Consensus 121 ------~~-------~-~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~ 186 (337)
T 2el7_A 121 ------TV-------W-SGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPR 186 (337)
T ss_dssp ------CC-------B-HHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCC
T ss_pred ------CC-------C-hHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeeccccccc
Confidence 00 0 011222222222333467899999999999988877777665 5 456643332 23
Q ss_pred -eeccc-ccccchhhh
Q 043341 478 -LNMVY-TLLSKRKLL 491 (758)
Q Consensus 478 -l~~~~-~klSKR~~~ 491 (758)
..+.| +|||||..+
T Consensus 187 l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 187 VPGIDGKAKMSKSLGN 202 (337)
T ss_dssp CBCTTSSSBCCTTTTC
T ss_pred ccCCCCccccCCCCCC
Confidence 23568 899999853
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=98.72 Aligned_cols=91 Identities=5% Similarity=-0.099 Sum_probs=65.3
Q ss_pred ccEEeeCCCCCC-chHHHHHHHHHh-CC-Ccce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQEDL-GV-RKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~al-g~-~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++..+-|.|+.. |.........++ +. +.|. +++++++..+|+|||||+++ ..+..++.++
T Consensus 604 ~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~d~i~~- 667 (967)
T 1wz2_A 604 LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE- 667 (967)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCC---------------CCBHHHHHHT-
T ss_pred CeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccC---------------CCCHHHHHHH-
Confidence 343445888763 444443333443 32 2343 55568998899999999963 4577888887
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
|+++++|.|++..+...++..|+.+.+....
T Consensus 668 yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 698 (967)
T 1wz2_A 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698 (967)
T ss_dssp TCHHHHHHHHHHHCCTTCCEEECHHHHHHHH
T ss_pred hChHHHHHHHHhCCCCCCCcccCHHHHHHHH
Confidence 9999999999887899999999998876653
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00032 Score=76.24 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=50.7
Q ss_pred CCCCCccchhhHHH-HHHHHHHcccCceEEEEecCC--------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSGYLHIGHSKAA-LLNQYFAQRYQGQLIVRFDDT--------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG~lHiGhar~a-l~n~~~Ar~~~G~~ilRieDt--------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
-|||.|||||.-.+ +++| +-+.++..+++=|.|. +++ ...+....+..++-.+|++++ .+..||+..
T Consensus 90 ~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 167 (386)
T 3hzr_A 90 YPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-EASKMSNDLMKYILAFGFNEDKTFIYTDYQYF 167 (386)
T ss_dssp CCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-HHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-HHHHHHHHHHHHHHHcCCCCcceEEEeccHHH
Confidence 47899999999999 7777 5555677777778762 333 334455566777778899988 466788887
Q ss_pred HHHHH
Q 043341 326 PDLME 330 (758)
Q Consensus 326 ~~~~~ 330 (758)
+.++.
T Consensus 168 ~~~~~ 172 (386)
T 3hzr_A 168 GKMYR 172 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 63333
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00061 Score=74.20 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=56.2
Q ss_pred eeeeccCCCCCCCccchhhHHHH-HHHHHHcccCceEEEEecCC-----Cc---ccchHHHHHHHHHHHHHhCCCCC--C
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDDT-----NP---AKESNEFVDNLLKDIETLGIKYE--T 317 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al-~n~~~Ar~~~G~~ilRieDt-----d~---~r~~~~~~~~i~~dl~~LGi~~d--~ 317 (758)
.+.+=|-| ||.|||||.-.++ .+| +-..+|...+.=|.|. ++ .....+....+..++..+|++++ .
T Consensus 75 ~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 151 (392)
T 3jxe_A 75 FLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF 151 (392)
T ss_dssp EEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred EEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE
Confidence 35566665 5999999999996 677 4444677666555442 21 22344566677778888899998 5
Q ss_pred cccccCCHHHHHHHHHHH
Q 043341 318 VTYTSDYFPDLMEMAENL 335 (758)
Q Consensus 318 ~~~~S~~~~~~~~~~~~L 335 (758)
+++||+..+ |.+.+-.|
T Consensus 152 i~~qS~~~~-~~~~~~~l 168 (392)
T 3jxe_A 152 IFQNSEFTK-IYEMAIPI 168 (392)
T ss_dssp EEETTTSTH-HHHHHHHH
T ss_pred EEECchhHH-HHHHHHHH
Confidence 788999987 55555444
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0025 Score=53.47 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=52.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------C-------CccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------G-------SAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g-------~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|.+++| +.+.+++|.+++.+|...|++|+...+ | .+|++.+ ||..|.++.+|..
T Consensus 4 m~v~ly--~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i-~g~~i~g~~~i~~ 80 (89)
T 3msz_A 4 MKVKIY--TRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI-DDEHIGGFTELKA 80 (89)
T ss_dssp CCEEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE-TTEEEESHHHHHH
T ss_pred eEEEEE--EcCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE-CCEEEeChHHHHH
Confidence 667888 888999999999999999999887532 3 6999998 8999999999999
Q ss_pred HHHHhC
Q 043341 94 YIGRVG 99 (758)
Q Consensus 94 yL~~~~ 99 (758)
|+.+.+
T Consensus 81 ~~~~~~ 86 (89)
T 3msz_A 81 NADKIL 86 (89)
T ss_dssp THHHHT
T ss_pred HHHHHh
Confidence 998764
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0028 Score=52.35 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=49.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+++| +.+.+++|.+++.++...|++|+...+ +.+|++.. ||..+.++.+|++|+.+
T Consensus 3 i~~y--~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~-~g~~i~g~~~i~~~~~~ 74 (82)
T 1fov_A 3 VEIY--TKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI-DAQHIGGYDDLYALDAR 74 (82)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE-TTEEEESHHHHHHHHHT
T ss_pred EEEE--ECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEeCHHHHHHHHHC
Confidence 5677 778899999999999999999887543 78999987 88999999999999875
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=71.62 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=47.5
Q ss_pred CCCC-CccchhhHHH-HHHHHHHcccCceEEEEecCC-----C--cccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSG-YLHIGHSKAA-LLNQYFAQRYQGQLIVRFDDT-----N--PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG-~lHiGhar~a-l~n~~~Ar~~~G~~ilRieDt-----d--~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
.||| .|||||.-.+ +++| +-+.++..+++-|.|. + ......++...+..++-.+|++++ .++.||+..
T Consensus 109 ~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~ 187 (406)
T 3tze_A 109 GPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEAS 187 (406)
T ss_dssp CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG
T ss_pred CCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhH
Confidence 4788 7999999998 5677 6666777788777663 1 122334556677777778899987 355666655
Q ss_pred H
Q 043341 326 P 326 (758)
Q Consensus 326 ~ 326 (758)
+
T Consensus 188 ~ 188 (406)
T 3tze_A 188 H 188 (406)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=71.80 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=46.8
Q ss_pred CCCC-CccchhhHHH-HHHHHHHcccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSG-YLHIGHSKAA-LLNQYFAQRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG-~lHiGhar~a-l~n~~~Ar~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
-||| .|||||.-.+ +++| +-+.++..+++-|.|- .+.....++...+..++-.+|++++ .+..+|+..
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~ 164 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM 164 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHT
T ss_pred cCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHH
Confidence 4788 6999999998 5666 5565677777766653 1222344566677788888899988 355666654
Q ss_pred H
Q 043341 326 P 326 (758)
Q Consensus 326 ~ 326 (758)
.
T Consensus 165 ~ 165 (395)
T 3i05_A 165 G 165 (395)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0031 Score=68.51 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=49.2
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----C-Cc----ccchHHHH-HHHH----HHHHHhCCCC
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----T-NP----AKESNEFV-DNLL----KDIETLGIKY 315 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----t-d~----~r~~~~~~-~~i~----~dl~~LGi~~ 315 (758)
+.+=|- |||.|||||.-.++.++..-...|...+.=|.| | |+ .....+.. ..+. .++..+|+++
T Consensus 36 vy~G~~--PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp 113 (375)
T 2cyc_A 36 HYIGFE--ISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDP 113 (375)
T ss_dssp EEEEEC--CCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCG
T ss_pred EEeCCC--CCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 555565 558999999666777776666666666666655 2 22 11122333 4444 7788999998
Q ss_pred C--CcccccCCHHH
Q 043341 316 E--TVTYTSDYFPD 327 (758)
Q Consensus 316 d--~~~~~S~~~~~ 327 (758)
+ .++.||+..+.
T Consensus 114 ~k~~i~~qS~~~~~ 127 (375)
T 2cyc_A 114 KKVEFVLASEILEK 127 (375)
T ss_dssp GGSEEEETHHHHTB
T ss_pred cceEEEEcchhhhh
Confidence 8 57789887654
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0077 Score=66.46 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=48.7
Q ss_pred eeeccCCCCC-CCccchhhHHHH-HHHHHHcccCceEEEEecC----C-Cc---ccchHHHHHHHHHHHHHhCCCCC--C
Q 043341 250 VRLRFAPEPS-GYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDD----T-NP---AKESNEFVDNLLKDIETLGIKYE--T 317 (758)
Q Consensus 250 v~~RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilRieD----t-d~---~r~~~~~~~~i~~dl~~LGi~~d--~ 317 (758)
|.+=|- || |.|||||.-.++ ++| +-+.+|...+.=|.| + |+ .....+....+..++-.+|++++ .
T Consensus 105 vy~G~d--PTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~ 181 (432)
T 2ip1_A 105 LYTGRG--PSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTF 181 (432)
T ss_dssp EEEEEC--CCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred EEEeec--CCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 444444 67 789999999987 565 444477766666666 2 22 22344556666777777899987 5
Q ss_pred cccccCCH
Q 043341 318 VTYTSDYF 325 (758)
Q Consensus 318 ~~~~S~~~ 325 (758)
++.||+..
T Consensus 182 i~~nSd~~ 189 (432)
T 2ip1_A 182 IFSDLQYM 189 (432)
T ss_dssp EEEHHHHC
T ss_pred EEeCchhh
Confidence 77888875
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0032 Score=67.67 Aligned_cols=74 Identities=19% Similarity=0.348 Sum_probs=49.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----Cc----ccchHHHHHHHHHHHHHhCCCCC--Cc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----NP----AKESNEFVDNLLKDIETLGIKYE--TV 318 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d~----~r~~~~~~~~i~~dl~~LGi~~d--~~ 318 (758)
+.+=|-|| |.|||||.-.++.++..-...|...+.=|.|. |+ .....+....+.+++-.+|++++ .+
T Consensus 43 vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 120 (348)
T 2j5b_A 43 AYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRF 120 (348)
T ss_dssp EEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred EEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEE
Confidence 55556554 89999996666666665555566777776551 32 22344566777777878899998 56
Q ss_pred ccccCCH
Q 043341 319 TYTSDYF 325 (758)
Q Consensus 319 ~~~S~~~ 325 (758)
+.||+.+
T Consensus 121 ~~qs~~~ 127 (348)
T 2j5b_A 121 IWASEFI 127 (348)
T ss_dssp EEHHHHH
T ss_pred EECCHhh
Confidence 7888853
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0069 Score=51.34 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=48.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+++| +.+.|++|.+++.++..+|++|+...+ ..+|++.. +|..+.++.+|..|+.+
T Consensus 8 v~ly--~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~-~g~~i~g~~~i~~~~~~ 79 (92)
T 2khp_A 8 VIIY--TRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFI-GSVHVGGCDDLYALEDE 79 (92)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEE-TTEEEESHHHHHHHHTT
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEcCHHHHHHHHHc
Confidence 5777 888899999999999999999887543 68999987 88999999999999855
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.014 Score=50.14 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=49.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEec--hHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQG--TYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~E--S~aIl~yL~~~~ 99 (758)
+++| +.+.+|+|.+++-+|..+|++|+...+ ..||++.++||.++.+ ...|..+|++..
T Consensus 6 I~vY--s~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 6 LTIY--TTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp EEEE--ECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHH
T ss_pred EEEE--cCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 7899 899999999999999999999998654 4799999988988865 567777887754
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0079 Score=66.22 Aligned_cols=51 Identities=14% Similarity=-0.025 Sum_probs=37.9
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKLL 491 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~~ 491 (758)
+.++++-|.|...|...=.-+...+|..+|.......| .+.|+|||||..+
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence 78889999999988877777788887765544333333 3568999999854
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0079 Score=72.17 Aligned_cols=92 Identities=7% Similarity=-0.087 Sum_probs=66.7
Q ss_pred ccEEeeCCCCCC-chHHHHHHHHHh-CC-Ccce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQEDL-GV-RKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~al-g~-~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++.-+-|.||.. |......+..++ +. +.|. +.+++++...|+|||||+++ ..++.++.++
T Consensus 604 ~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~dli~~- 667 (810)
T 1wkb_A 604 LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE- 667 (810)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTC---------------CCBHHHHHHH-
T ss_pred ceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCC---------------cCCHHHHHHH-
Confidence 443345888874 555544333343 32 2354 44568999999999999973 4577888887
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
|+++++|.|++..+...++..|+.+.+....+
T Consensus 668 yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~ 699 (810)
T 1wkb_A 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK 699 (810)
T ss_dssp HCHHHHHHHHHHHCCTTCCEEECHHHHHHHHH
T ss_pred cChHHHHHHHHhcCCCCCCcccCHHHHHHHHH
Confidence 99999999998778999999999998877543
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0083 Score=66.22 Aligned_cols=52 Identities=10% Similarity=-0.057 Sum_probs=38.8
Q ss_pred ccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccc-cccchhh
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYT-LLSKRKL 490 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~-klSKR~~ 490 (758)
....++++.|.|...|...-.-+...+|..++.......| .+.|+ |||||..
T Consensus 185 ~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~ 238 (432)
T 1h3f_A 185 AIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLD 238 (432)
T ss_dssp HHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred hcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCC
Confidence 3458899999999988888888888998766644443333 35676 9999984
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=48.34 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=48.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+++| +.+.+++|.+++.++...|++|+...+ ..+|++.. ||..+.++.+|.+|+.+
T Consensus 8 v~~y--~~~~C~~C~~~~~~L~~~~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~-~g~~i~g~~~i~~~~~~ 78 (89)
T 2klx_A 8 IILY--TRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMVQRANGRNTFPQIFI-GDYHVGGCDDLYALENK 78 (89)
T ss_dssp EEEE--SCSCCTTTHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHSSCCSCEEEE-TTEECCSHHHHHHHHHH
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCCcEEEECCHHHHHHHHHHhCCCCCcCEEEE-CCEEEeChHHHHHHHHc
Confidence 6777 888999999999999999999876432 58999987 89999999999999865
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.016 Score=70.67 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=70.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEec---CC---------------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFD---DT--------------------------------- 291 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRie---Dt--------------------------------- 291 (758)
+++==+|+|||.|||||+++.++.+.+|| ...|.-+++.- .+
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 56666899999999999999999999998 34465555541 11
Q ss_pred ----CcccchHHHHHHHHHHHHHhCCCCC--CcccccC----CHHHHHHHHHHHHHhCcee
Q 043341 292 ----NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSD----YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 292 ----d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~----~~~~~~~~~~~Li~~G~aY 342 (758)
++.....+|.+.+.++|+.||+..| ..+.+++ |....+.+..+|.++|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliy 177 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIV 177 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEE
Confidence 1222233566889999999998765 6666666 5666788899999999999
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0038 Score=69.77 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=48.2
Q ss_pred eeeccCCCCC-CCccchhhHHHH-HHHHHHcccCceEEEEecC-C------CcccchHHHHHHHHHHHHHhCCCCC--Cc
Q 043341 250 VRLRFAPEPS-GYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDD-T------NPAKESNEFVDNLLKDIETLGIKYE--TV 318 (758)
Q Consensus 250 v~~RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilRieD-t------d~~r~~~~~~~~i~~dl~~LGi~~d--~~ 318 (758)
+.+=|- || |.|||||.-.++ ++| +-+.+|...+.-|.| + .......++...+..++-.+|++++ .+
T Consensus 158 vy~G~d--PTag~LHLGh~v~~~~~~~-lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i 234 (477)
T 1r6t_A 158 LYTGRG--PSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI 234 (477)
T ss_dssp EEEEEC--CCTTCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EEEccc--CCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEE
Confidence 444444 67 789999999987 565 444467665555543 2 1222345556666777777899988 46
Q ss_pred ccccCCHH
Q 043341 319 TYTSDYFP 326 (758)
Q Consensus 319 ~~~S~~~~ 326 (758)
+.||+...
T Consensus 235 ~~nsd~~~ 242 (477)
T 1r6t_A 235 FSDLDYMG 242 (477)
T ss_dssp EEHHHHGG
T ss_pred Eechhhhc
Confidence 77888654
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.028 Score=61.88 Aligned_cols=50 Identities=6% Similarity=-0.037 Sum_probs=36.8
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHh-CCCcceEeeeeee-ecccccccchhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDL-GVRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~al-g~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
+.++++-|.|...|...=.-+...+ |...|.......| .+.|+||||+..
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~ 237 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES 237 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCC
Confidence 6788888999988877777777888 7765544443333 356899999984
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.031 Score=60.50 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=37.5
Q ss_pred cccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeee-c-ccc-cccchhh
Q 043341 438 AKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLN-M-VYT-LLSKRKL 490 (758)
Q Consensus 438 ~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~-~-~~~-klSKR~~ 490 (758)
...+.++++-|.|...|...=.-+...+|.. .|......+|+ + .|+ |||||..
T Consensus 197 l~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~ 253 (373)
T 3vgj_A 197 FFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDE 253 (373)
T ss_dssp HHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSST
T ss_pred cccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCC
Confidence 3456788999999887776666677888876 56555555554 3 564 9999973
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.021 Score=60.59 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=51.0
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----Cc-ccchHHHHHHHHHHHHHhCCCCC--CcccccCCHHHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----NP-AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFPDL 328 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d~-~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~~~ 328 (758)
.|||.|||||...++.++..-.. |...+.-|.|. |+ .....+....+..++..+|++++ .++.||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 47799999999988887765444 55666666442 22 12345666777888888999998 5778999875 3
Q ss_pred HHHH
Q 043341 329 MEMA 332 (758)
Q Consensus 329 ~~~~ 332 (758)
.+.+
T Consensus 89 ~el~ 92 (322)
T 3tzl_A 89 MELY 92 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.039 Score=59.71 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=53.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Ccc----cchHHHHHHHHHHHHHhCCCCC--Ccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NPA----KESNEFVDNLLKDIETLGIKYE--TVT 319 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~~----r~~~~~~~~i~~dl~~LGi~~d--~~~ 319 (758)
|.|=+- |||.|||||.-+++.++.+- ..+...+.=|.|. ++. ....+....+..++-.+|++++ .++
T Consensus 73 v~sG~~--PTG~lHLGhyv~~~~~~~lq-~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if 149 (372)
T 3a04_A 73 VLTGFM--PSGKFHFGHKLTVDQLIYLQ-KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY 149 (372)
T ss_dssp EEEEEC--CCSCCBHHHHHHHHHHHHHH-HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEE
T ss_pred EEeCcC--CCcHhHHHHHHHHHHHHHHH-hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchh
Confidence 444454 58999999999766555444 3466666666552 222 1234455666777788999998 477
Q ss_pred cccCCHHHHHHHHHH
Q 043341 320 YTSDYFPDLMEMAEN 334 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~ 334 (758)
+||++...+.+.+..
T Consensus 150 ~qS~~~~~~~~l~~~ 164 (372)
T 3a04_A 150 FQTNRGTPYFRLIQL 164 (372)
T ss_dssp EGGGSCHHHHHHHHH
T ss_pred hhccchHHHHHHHHH
Confidence 899977666665543
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.036 Score=55.93 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=48.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|.++|| +.+.|++|.+++.+|..+|++|+...+ ..+|++.+ +|..|.++..|+.||+
T Consensus 170 ~~i~ly--~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~-~g~~i~g~~~i~~~l~ 241 (241)
T 1nm3_A 170 ESISIF--TKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFI-GGKHIGGSDDLEKYFA 241 (241)
T ss_dssp CCEEEE--ECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE-TTEEEESHHHHHHC--
T ss_pred ceEEEE--ECCCChHHHHHHHHHHHcCCceEEEECCCchHHHHHHHHhCCCCcCEEEE-CCEEEECHHHHHHHhC
Confidence 447888 888999999999999999999987654 68999988 8899999999999874
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.069 Score=44.93 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=42.6
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------------CCccEEEeCCCcEE--echHHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------------GSAPTFSFSNGSKL--QGTYVLLRY 94 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------------g~vP~L~~~~g~~l--~ES~aIl~y 94 (758)
.++|| +.+.|++|.+++.+|+.+|++|+...+ .++|++.+ ||..+ ++...|.++
T Consensus 13 ~v~ly--~~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~-~g~~i~G~~~~~l~~~ 89 (92)
T 3ic4_A 13 EVLMY--GLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK-GDKHVLGYNEEKLKEL 89 (92)
T ss_dssp SSEEE--ECTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE-TTEEEESCCHHHHHHH
T ss_pred eEEEE--ECCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE-CCEEEeCCCHHHHHHH
Confidence 37888 888899999999999999999876432 79999998 77766 344445544
Q ss_pred H
Q 043341 95 I 95 (758)
Q Consensus 95 L 95 (758)
|
T Consensus 90 l 90 (92)
T 3ic4_A 90 I 90 (92)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.072 Score=63.93 Aligned_cols=50 Identities=16% Similarity=0.001 Sum_probs=43.1
Q ss_pred cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
|||||+++ ..+..++.++ |+++++|.|++..+...++..|+.+.+....+
T Consensus 639 KMSKSkGN---------------vVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a~r 688 (880)
T 4arc_A 639 KMSKSKNN---------------GIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGANR 688 (880)
T ss_dssp ECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH
T ss_pred cccCcCCC---------------CCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHHHH
Confidence 99999974 4477888888 99999999999998999999999998776543
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.051 Score=59.09 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=52.1
Q ss_pred eeeccCCCCC-CCccchhhHHHH-HHHHHHcccCceEEEEecCCC--------cccchHHHHHHHHHHHHHhCCCCC--C
Q 043341 250 VRLRFAPEPS-GYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDDTN--------PAKESNEFVDNLLKDIETLGIKYE--T 317 (758)
Q Consensus 250 v~~RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilRieDtd--------~~r~~~~~~~~i~~dl~~LGi~~d--~ 317 (758)
+.+=|- || |.|||||.-.++ ++| +-+.++..+++-|.|-- ......++...+..++..+|++++ .
T Consensus 77 vy~G~~--PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 153 (393)
T 3hv0_A 77 LYTGRG--PSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTF 153 (393)
T ss_dssp EEEEEC--CSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEE
T ss_pred EEeCCC--CCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceE
Confidence 444444 67 689999999998 666 55666667778886631 122334556677788888999988 4
Q ss_pred cccccCCHHHH
Q 043341 318 VTYTSDYFPDL 328 (758)
Q Consensus 318 ~~~~S~~~~~~ 328 (758)
++.+|+....|
T Consensus 154 i~~ns~~~~~~ 164 (393)
T 3hv0_A 154 IFTNLEYIAEL 164 (393)
T ss_dssp EEEHHHHHHHH
T ss_pred EEECCHHHHHH
Confidence 56778776644
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.056 Score=63.08 Aligned_cols=52 Identities=13% Similarity=-0.028 Sum_probs=37.2
Q ss_pred ccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeee-c-ccc-cccchhh
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLN-M-VYT-LLSKRKL 490 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~-~-~~~-klSKR~~ 490 (758)
..+.+++..|.|...|...-.-+...+|.. .|......+|+ + .|+ |||||..
T Consensus 181 ~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~ 236 (690)
T 3p0j_A 181 FLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDP 236 (690)
T ss_dssp HTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred hhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCC
Confidence 356789999999887776666677888876 46555445554 4 464 9999974
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.037 Score=60.70 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=35.1
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHh-CCCcceEeeeeee-ecccccccchhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDL-GVRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~al-g~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
+.++++-|.|...|...=.-+...+ +..++.......| .+.|+||||+..
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~ 236 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTES 236 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCC
Confidence 7888888999988877777777888 7665543333333 356899999974
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.033 Score=59.90 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=28.6
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
+.++++-|.|...|...=.-+...+|...|.......| .+.|+|||||..
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~ 260 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAG 260 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC------------
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCC
Confidence 78899999999888887777888888766644444443 356899999974
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.13 Score=41.12 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=38.5
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEe
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ 86 (758)
|.+++| +.+.+++|.+++..++.+|++|+...+ +.+|++.. ||..+.
T Consensus 1 m~i~~y--~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~-~g~~~~ 62 (75)
T 1r7h_A 1 MSITLY--TKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEV-DGEHWS 62 (75)
T ss_dssp CCEEEE--ECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE-TTEEEE
T ss_pred CeEEEE--eCCCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCccCEEEE-CCeEEc
Confidence 456777 888899999999999999999887543 68999997 777653
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.081 Score=57.35 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=50.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
|.+=|- |||.|||||.-.++.++..-.. +..+++=|.| .|++ ...+....+..++..+|++++ .+++
T Consensus 38 i~sG~~--PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~kt~if~ 113 (388)
T 3prh_A 38 IFSGIQ--PSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEKATLFI 113 (388)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEe
Confidence 444444 6799999999999887754433 5556665544 2333 334556677778888999998 5778
Q ss_pred ccCCHH
Q 043341 321 TSDYFP 326 (758)
Q Consensus 321 ~S~~~~ 326 (758)
||+..+
T Consensus 114 qS~v~~ 119 (388)
T 3prh_A 114 QSEVPA 119 (388)
T ss_dssp GGGSTH
T ss_pred cccccc
Confidence 999865
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.16 Score=43.92 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=49.6
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
.+++| +.+.+++|.+++-+|...|++|+...+ ..+|++.+ +|..|.++..|..++.+
T Consensus 17 ~v~vy--~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi-~g~~igG~d~l~~~~~~ 90 (99)
T 3qmx_A 17 KIEIY--TWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFI-DDQHIGGCDDIYALDGA 90 (99)
T ss_dssp CEEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE-TTEEEESHHHHHHHHHT
T ss_pred CEEEE--EcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE-CCEEEeChHHHHHHHHc
Confidence 37888 889999999999999999999987644 57999988 89999999999988754
|
| >1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.2 Score=42.39 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=47.7
Q ss_pred eEEEecccCCCCcH------HHHHHHHHhcCCCeeeeec--------------C----CccEEEeCCCcEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPP------LLVIAAAKLAGITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~------~~v~i~l~~~gl~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~y 94 (758)
++|| +.+.++.| .+++.+|..+|++|+...+ | .+|++.+ ||..+-+...+..+
T Consensus 4 v~ly--~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi-~g~~igG~d~l~~l 80 (93)
T 1t1v_A 4 LRVY--STSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN-GNHYCGDYELFVEA 80 (93)
T ss_dssp EEEE--ECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE-TTEEEEEHHHHHHH
T ss_pred EEEE--EcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE-CCEEEeCHHHHHHH
Confidence 6788 88889999 8999999999999987654 5 8999998 88899998888887
Q ss_pred HHH
Q 043341 95 IGR 97 (758)
Q Consensus 95 L~~ 97 (758)
..+
T Consensus 81 ~~~ 83 (93)
T 1t1v_A 81 VEQ 83 (93)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.047 Score=60.25 Aligned_cols=69 Identities=23% Similarity=0.452 Sum_probs=48.3
Q ss_pred CCC-CCccchhhHHHH-HHHHHHcccCceEEEEecCC-----C---cccchHHHHHHHHHHHHHhCCCCC--CcccccCC
Q 043341 257 EPS-GYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDDT-----N---PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDY 324 (758)
Q Consensus 257 ~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilRieDt-----d---~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~ 324 (758)
.|| |.|||||.-.++ ++| +-+.++..+++-|.|- . ......++...+..++-.+|++++ .++.||+.
T Consensus 99 dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~ 177 (451)
T 3foc_A 99 GPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQY 177 (451)
T ss_dssp CCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchh
Confidence 377 889999999998 677 5666677788888773 1 122334555666777777799887 46678877
Q ss_pred HH
Q 043341 325 FP 326 (758)
Q Consensus 325 ~~ 326 (758)
.+
T Consensus 178 ~~ 179 (451)
T 3foc_A 178 LS 179 (451)
T ss_dssp TT
T ss_pred hc
Confidence 53
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.56 Score=54.64 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCCCCCCCccccCeeeeccCCCCCCCccchhhHHHHH--HHHHHcccCceEEEEecCC-----Cc----ccchHHHHHHH
Q 043341 236 PSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALL--NQYFAQRYQGQLIVRFDDT-----NP----AKESNEFVDNL 304 (758)
Q Consensus 236 ~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~--n~~~Ar~~~G~~ilRieDt-----d~----~r~~~~~~~~i 304 (758)
...+.+++..+....-+=|-| +||.|||||+-..+. +...-...|+..++-|.|. |+ .....++....
T Consensus 369 ~~~~~~~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~ 447 (690)
T 3p0j_A 369 PLAETALPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVN 447 (690)
T ss_dssp -------CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCcccccCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHH
Confidence 334445565555555455889 999999999999875 5544445688888888764 22 12334556677
Q ss_pred HHHHHHhCCCCC-CcccccCCHH
Q 043341 305 LKDIETLGIKYE-TVTYTSDYFP 326 (758)
Q Consensus 305 ~~dl~~LGi~~d-~~~~~S~~~~ 326 (758)
..++..||+++. +++++|+...
T Consensus 448 ~~~~~alG~d~k~~fv~~S~~~~ 470 (690)
T 3p0j_A 448 CALLKAYGLPSSVKIVTENEVIL 470 (690)
T ss_dssp HHHHHHHTCCTTSEEEEHHHHHH
T ss_pred HHHHHhcCCCcCeEEEECCchhc
Confidence 788899999865 6788898553
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.13 Score=55.02 Aligned_cols=74 Identities=24% Similarity=0.098 Sum_probs=50.1
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCC--Ccc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYE--TVT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d--~~~ 319 (758)
.|.+=|- |||.|||||.-.++-+|.- -+.+..+++=|.| .|++ ...+....+..++..+|++++ .++
T Consensus 17 ~i~sG~~--PTG~lHLGh~vg~l~~~~~-lQ~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 17 IVFSGAQ--PSGELTIGNYMGALRQWVQ-MQDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp EEEEEEC--SCSCCBHHHHHHTHHHHHT-TTTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred EEEECcC--CCCcccHHHHHHHHHHHHH-HHhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceEEE
Confidence 3555555 5699999999988877742 2234455555544 2332 344566677788888999998 477
Q ss_pred cccCCHH
Q 043341 320 YTSDYFP 326 (758)
Q Consensus 320 ~~S~~~~ 326 (758)
+||+..+
T Consensus 93 ~qS~v~~ 99 (346)
T 3n9i_A 93 VQSHVPE 99 (346)
T ss_dssp EGGGCTH
T ss_pred ecccccc
Confidence 8999765
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.11 Score=55.53 Aligned_cols=74 Identities=23% Similarity=0.091 Sum_probs=48.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----CCc--ccchHHHHHHHHHHHHHhCCCCC--Ccccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TNP--AKESNEFVDNLLKDIETLGIKYE--TVTYT 321 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dl~~LGi~~d--~~~~~ 321 (758)
|.+=|- |||.|||||.-.++-+|..-.. +..+++=|.| |++ .....+....+..++..+|++++ .+++|
T Consensus 9 v~sG~~--PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 9 VLSGVQ--PSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp EEEEEC--SSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred EEeCcC--CCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 445554 6799999999988866532222 2345555544 122 12344566777888888999998 57789
Q ss_pred cCCHH
Q 043341 322 SDYFP 326 (758)
Q Consensus 322 S~~~~ 326 (758)
|+..+
T Consensus 86 S~v~~ 90 (341)
T 3sz3_A 86 SHVPE 90 (341)
T ss_dssp GGCTH
T ss_pred cchhh
Confidence 99864
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.2 Score=60.42 Aligned_cols=50 Identities=16% Similarity=-0.051 Sum_probs=43.1
Q ss_pred ccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 483 TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 483 ~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
.|||||+++ ..+..++.++ |++|++|.|++..+...++..|+.+.+....
T Consensus 636 ~KMSKSkGN---------------vVdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~~ 685 (878)
T 2v0c_A 636 AVMSKSKGN---------------GVMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGAW 685 (878)
T ss_dssp EECSGGGTC---------------CCBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHHH
T ss_pred HHhhccCCC---------------cccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHHH
Confidence 899999973 4477888888 9999999999998899999999999877653
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.3 Score=40.62 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=44.8
Q ss_pred eEEEecccC----CCCcHHHHHHHHHhcCCCeeeeec---------------------C-----CccEEEeCCCcEEech
Q 043341 39 MEIKVLSFP----ADSPPLLVIAAAKLAGITIPTETS---------------------G-----SAPTFSFSNGSKLQGT 88 (758)
Q Consensus 39 m~L~~l~~~----~s~~~~~v~i~l~~~gl~~~~~~~---------------------g-----~vP~L~~~~g~~l~ES 88 (758)
++|| +.+ .+++|.+++.+|..+|++|+...+ . .+|++.++||..|.++
T Consensus 2 v~iY--~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~ 79 (87)
T 1aba_A 2 FKVY--GYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF 79 (87)
T ss_dssp EEEE--ECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred EEEE--EeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence 4677 777 889999999999999999876321 4 7999987688899999
Q ss_pred HHHHHHH
Q 043341 89 YVLLRYI 95 (758)
Q Consensus 89 ~aIl~yL 95 (758)
..+..++
T Consensus 80 d~l~~~~ 86 (87)
T 1aba_A 80 DQLREYF 86 (87)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8887663
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=90.52 E-value=0.64 Score=37.89 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=45.2
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHh-----cCCCeeeeec--------------C----CccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKL-----AGITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~-----~gl~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|.+.+| +.+.+++|.++.-.+.. .+++|....+ | .+|++.. +|..+.++..|..
T Consensus 1 m~v~~f--~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~-~g~~i~~~~~l~~ 77 (85)
T 1ego_A 1 MQTVIF--GRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV-DQQHIGGYTDFAA 77 (85)
T ss_dssp CEEEEE--CCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE-TTEEEESSHHHHH
T ss_pred CEEEEE--eCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEE-CCEEEECHHHHHH
Confidence 445666 77889999988777776 6777655321 4 8999987 8899999999999
Q ss_pred HHHHh
Q 043341 94 YIGRV 98 (758)
Q Consensus 94 yL~~~ 98 (758)
++.+.
T Consensus 78 ~~~~~ 82 (85)
T 1ego_A 78 WVKEN 82 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=89.48 E-value=0.55 Score=40.42 Aligned_cols=46 Identities=9% Similarity=-0.095 Sum_probs=37.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------------CCccEEEeCCCcEEe
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------------g~vP~L~~~~g~~l~ 86 (758)
++|| +.+.+++|.+++.+|+.+|++|+...+ ..+|++.+++|..+.
T Consensus 24 v~ly--~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~ig 90 (103)
T 3nzn_A 24 VIMY--GLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIV 90 (103)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEE
T ss_pred EEEE--cCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEE
Confidence 6888 888999999999999999999886422 679999995547663
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=87.50 E-value=1.4 Score=38.37 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=47.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+.+| +.+.+++|.+++-+|..+|++|+...+ ..+|++.+ +|..|-+...+..+...
T Consensus 21 v~vy--~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igG~~~~~~~~~~ 96 (113)
T 3rhb_A 21 VVIY--SKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV-CGKHIGGCTDTVKLNRK 96 (113)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE-TTEEEESHHHHHHHHHH
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE-CCEEEcCcHHHHHHHHc
Confidence 6778 888999999999999999999876322 68999988 89999999988887644
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=87.39 E-value=1.8 Score=37.59 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=45.5
Q ss_pred eEEEeccc-----CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSF-----PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~-----~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+.|| +. +.+++|.+++-+|..+|++|+...+ ..+|++.+ ||..|.+...+..+...
T Consensus 17 vvvy--~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igG~d~l~~l~~~ 93 (109)
T 1wik_A 17 VMLF--MKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV-RGDLVGGLDIVKELKDN 93 (109)
T ss_dssp EEEE--ESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC-SSSEEECHHHHHHHHHH
T ss_pred EEEE--EecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEE-CCEEEcCHHHHHHHHHC
Confidence 6777 66 7899999999999999999987654 67999987 88888888777666543
|
| >2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.96 E-value=1.5 Score=38.44 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=46.9
Q ss_pred ceeEEEecccCCCCcHH------HHHHHHHhcCCCeeeeec------------C------------CccEEEeCCCcEEe
Q 043341 37 MTMEIKVLSFPADSPPL------LVIAAAKLAGITIPTETS------------G------------SAPTFSFSNGSKLQ 86 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~------~v~i~l~~~gl~~~~~~~------------g------------~vP~L~~~~g~~l~ 86 (758)
|.++|| +.+.+++|. +++-+|..+|++|+...+ . .+|++.+ ||..|-
T Consensus 8 m~V~vy--~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi-~g~~iG 84 (111)
T 2ct6_A 8 MVIRVF--IASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFN-GDRYCG 84 (111)
T ss_dssp CCEEEE--ECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEE-TTEEEE
T ss_pred cEEEEE--EcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEE-CCEEEe
Confidence 667888 888999999 899999999999987654 1 4899998 888888
Q ss_pred chHHHHHHHH
Q 043341 87 GTYVLLRYIG 96 (758)
Q Consensus 87 ES~aIl~yL~ 96 (758)
+...+..+..
T Consensus 85 G~d~l~~l~~ 94 (111)
T 2ct6_A 85 DYDSFFESKE 94 (111)
T ss_dssp EHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 8887777654
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=86.84 E-value=1.1 Score=36.17 Aligned_cols=47 Identities=11% Similarity=-0.030 Sum_probs=37.5
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEe
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ 86 (758)
|.+.+| +.+.+++|.+++..+...|++|+...+ ..+|++.. +|..+.
T Consensus 1 m~v~~f--~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~~-~g~~~~ 62 (81)
T 1h75_A 1 MRITIY--TRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA-GDLSWS 62 (81)
T ss_dssp CCEEEE--ECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE-TTEEEE
T ss_pred CEEEEE--cCCCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHhCCCccCEEEE-CCEEEe
Confidence 556777 778899999999999999999876543 67999977 776654
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=85.32 E-value=0.55 Score=51.63 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=47.9
Q ss_pred eeeccCCCCC-CCccchhhHHHH-HHHHHHcccCceEEEEecC-C------CcccchHHHHHHHHHHHHHhCCCCC--Cc
Q 043341 250 VRLRFAPEPS-GYLHIGHSKAAL-LNQYFAQRYQGQLIVRFDD-T------NPAKESNEFVDNLLKDIETLGIKYE--TV 318 (758)
Q Consensus 250 v~~RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilRieD-t------d~~r~~~~~~~~i~~dl~~LGi~~d--~~ 318 (758)
+.+=|- || |.|||||.-.++ ++| +-+.+|...+.-|.| | -......+....+..++-.+|++++ .+
T Consensus 111 vy~G~d--PTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i 187 (437)
T 1r6u_A 111 LYTGRG--PSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI 187 (437)
T ss_dssp EEEEEC--CCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred EEEccc--CCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 444444 67 789999999987 454 444467666666644 2 1222345555666777777899987 46
Q ss_pred ccccCCHH
Q 043341 319 TYTSDYFP 326 (758)
Q Consensus 319 ~~~S~~~~ 326 (758)
+.||+...
T Consensus 188 ~~nSd~~~ 195 (437)
T 1r6u_A 188 FSDLDYMG 195 (437)
T ss_dssp EEHHHHGG
T ss_pred Eechhhhh
Confidence 77888654
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=85.29 E-value=2.2 Score=37.39 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=45.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+.+| +.+.+|+|.+++-+|...|++|+...+ ..+|++.+ ||..|-+...+....
T Consensus 19 v~vy--~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi-~g~~igG~d~l~~l~ 91 (114)
T 3h8q_A 19 VVIF--SKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV-NKVHVGGCDQTFQAY 91 (114)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE-TTEEEESHHHHHHHH
T ss_pred EEEE--EcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE-CCEEEeCHHHHHHHH
Confidence 6778 788899999999999999999876432 68999998 888888887777654
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.16 E-value=2.2 Score=36.64 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=45.7
Q ss_pred eEEEeccc-----CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSF-----PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~-----~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+.+| +. +.+++|.+++-++...|++|+...+ ..+|++.. ||..+.+...+..+..+
T Consensus 19 vvvf--~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i-~g~~igg~d~~~~l~~~ 95 (105)
T 2yan_A 19 VMLF--MKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV-KGELVGGLDIVKELKEN 95 (105)
T ss_dssp EEEE--ESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE-TTEEEECHHHHHHHHHT
T ss_pred EEEE--EecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE-CCEEEeChHHHHHHHHC
Confidence 5667 55 7889999999999999999877543 68999988 88999998888877543
|
| >2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus} | Back alignment and structure |
|---|
Probab=84.76 E-value=1.4 Score=39.15 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=28.9
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
|.++|| +.+.|+.|.+++..|...|++|+.+.+
T Consensus 5 M~i~iY--~~~~C~~C~ka~~~L~~~gi~y~~~di 37 (120)
T 2kok_A 5 MSVTIY--GIKNCDTMKKARIWLEDHGIDYTFHDY 37 (120)
T ss_dssp SCEEEE--ECSSCHHHHHHHHHHHHHTCCEEEEEH
T ss_pred cEEEEE--ECCCChHHHHHHHHHHHcCCcEEEEee
Confidence 657899 888999999999999999999988643
|
| >3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.13 E-value=2.1 Score=37.50 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+.+++|.+++-+|...|++|+...+ ..+|.+.+ ||..|-+...+..+..
T Consensus 29 ~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi-~g~~iGG~d~l~~l~~ 93 (111)
T 3zyw_A 29 PRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV-SGELIGGLDIIKELEA 93 (111)
T ss_dssp BSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE-TTEEEECHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE-CCEEEecHHHHHHHHH
Confidence 7888999999999999999988653 68999998 8888988887777654
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.39 E-value=2.9 Score=37.53 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=46.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+.+| +.+.+++|.+++-++...+++|+...+ ..+|++.. +|..+.++..|..+...
T Consensus 29 vvvf--~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i-~G~~igg~~~l~~~~~~ 103 (130)
T 2cq9_A 29 VVIF--SKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV-NGTFIGGATDTHRLHKE 103 (130)
T ss_dssp EEEE--ECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE-TTEEEEEHHHHHHHHHH
T ss_pred EEEE--EcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE-CCEEEcChHHHHHHHHc
Confidence 5677 888999999999999999999875321 68999987 88999999888887654
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=2.9 Score=35.55 Aligned_cols=56 Identities=9% Similarity=-0.082 Sum_probs=46.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCC---eeeeec-------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGIT---IPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~---~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+.+| +.+.+++|.+++-++...+++ |+...+ ..+|++.. +|..+.++..|..+..
T Consensus 14 v~~f--~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~-~g~~i~g~~~~~~~~~ 90 (105)
T 1kte_A 14 VVVF--IKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI-GKECIGGCTDLESMHK 90 (105)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE-TTEEEESHHHHHHHHH
T ss_pred EEEE--EcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEE-CCEEEeccHHHHHHHH
Confidence 5777 788899999999999999998 665321 68999988 8899999998888764
Q ss_pred H
Q 043341 97 R 97 (758)
Q Consensus 97 ~ 97 (758)
.
T Consensus 91 ~ 91 (105)
T 1kte_A 91 R 91 (105)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A | Back alignment and structure |
|---|
Probab=82.85 E-value=2.8 Score=36.43 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
.+++|.+++-+|...|++|+...+ ..+|.+.+ ||..|-+...+..+..
T Consensus 32 ~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi-~g~~iGG~d~l~~l~~ 95 (109)
T 3ipz_A 32 MCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI-GGEFFGGCDITLEAFK 95 (109)
T ss_dssp SSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE-TTEEEECHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE-CCEEEeCHHHHHHHHH
Confidence 788999999999999999987654 68999998 8888988888777653
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=80.75 E-value=3.3 Score=37.72 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=43.4
Q ss_pred eEEEeccc-----CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSF-----PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~-----~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+.|| +. +.+++|.+++-+|...|++|+...+ ..+|++.+ ||..|-+...+..+.
T Consensus 37 Vvvy--~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI-~G~~iGG~d~l~~l~ 111 (135)
T 2wci_A 37 ILLY--MKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV-DGELVGGCDIVIEMY 111 (135)
T ss_dssp EEEE--ESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE-TTEEEESHHHHHHHH
T ss_pred EEEE--EEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE-CCEEEEChHHHHHHH
Confidence 6777 55 5788999999999999999987654 68999988 888888776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 758 | ||||
| d1gtra2 | 331 | c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (Gln | 2e-78 | |
| d1j09a2 | 305 | c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS | 2e-53 | |
| d1nzja_ | 286 | c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB | 3e-46 | |
| d1gtra1 | 209 | b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), | 2e-34 | |
| d2hrkb1 | 118 | a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, | 1e-07 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 9e-06 | |
| d2cvda1 | 124 | a.45.1.1 (A:76-199) Class sigma GST {Human (Homo s | 4e-04 | |
| d1nhya1 | 144 | a.45.1.1 (A:76-219) GST-like domain of elongation | 0.002 | |
| d2a2ra1 | 132 | a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapi | 0.002 |
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Score = 253 bits (646), Expect = 2e-78
Identities = 133/321 (41%), Positives = 190/321 (59%), Gaps = 6/321 (1%)
Query: 239 EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESN 298
+ DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP KE
Sbjct: 9 DEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDI 68
Query: 299 EFVDNLLKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER-- 355
E+V+++ D+E LG + Y+SDYF L A LI +G AYVD+ EQ+++ R
Sbjct: 69 EYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGT 128
Query: 356 --MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNP 413
G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV YR
Sbjct: 129 LTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKF 188
Query: 414 IPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHI 472
HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y + +++ +
Sbjct: 189 AEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQ 248
Query: 473 YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGA 532
YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F G
Sbjct: 249 YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 308
Query: 533 SKNLNLMEWDKLWTINKKIID 553
+K N +E L + ++ ++
Sbjct: 309 TKQDNTIEMASLESCIREDLN 329
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 185 bits (470), Expect = 2e-53
Identities = 76/318 (23%), Positives = 121/318 (38%), Gaps = 40/318 (12%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 310 TLGIKYET---------VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIE 360
LG+ Y+ S+ P + AE L+++G AY E++++ R +
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP---NKSLRDPVYYRCNPIPHH 417
R +I + RG +R K+ LR V Y IP
Sbjct: 122 YDGRARNIPPEEAEERA-----RRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSR 477
+ K YPTY A D G+T +R+ E+ + + G Y
Sbjct: 177 -VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 478 L-NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN- 535
L N T +SKRK ++ G L EAL ++ G S
Sbjct: 236 LRNPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPD 279
Query: 536 ----LNLMEWDKLWTINK 549
L E+ + +T +
Sbjct: 280 GREIFTLEEFIQAFTWER 297
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Score = 164 bits (415), Expect = 3e-46
Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 37/318 (11%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
+ RFAP PSG LH G AAL + A+ QG+ +VR +D +P +E + +L+ +
Sbjct: 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61
Query: 309 ETLGIKYETVTYTSDY-FPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
E G+ ++ E L QG +Y R ++Q
Sbjct: 62 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG----------- 110
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
++ +R + + LR ++ I +
Sbjct: 111 ---IYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF 167
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK-VHIYEFSRLNMVYTLLS 486
Y+ A D +G+T +R ++ + + + + G + +I+ LN LS
Sbjct: 168 AYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 227
Query: 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEA-LIQFILEQGASKNLNLMEWD-KL 544
K+ + DPR + + G EA F +EQ +++ K
Sbjct: 228 KQNHAPALP------KGDPRPVLIAALQFLGQQAEAHWQDFSVEQ-------ILQSAVKN 274
Query: 545 WTINKKIIDPVCPRHTAV 562
W + P V
Sbjct: 275 WRLTA------VPESAIV 286
|
| >d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]} Length = 209 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Ribosomal protein L25-like superfamily: Ribosomal protein L25-like family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain species: Escherichia coli [TaxId: 562]
Score = 128 bits (322), Expect = 2e-34
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 557 PRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL--- 613
PR AVI+ V L + + + + +P H G + ++ IWID AD +
Sbjct: 2 PRAMAVIDP--VKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEAN 59
Query: 614 -----ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLE------GSVKNTKLKLT 662
+ +E+ L + + + +D +GN+T + + + K +
Sbjct: 60 KQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIH 119
Query: 663 WLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEIL 722
W+ + + + + +D L + +DFL V+NP + + ++++ G+
Sbjct: 120 WVSAAHA-LPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAF 178
Query: 723 QLERKGYFRCDVPFTRSSKPV 743
Q ER+GYF D + + KPV
Sbjct: 179 QFEREGYFCLDSRHSTAEKPV 199
|
| >d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Arc1p N-terminal domain-like domain: GU4 nucleic-binding protein 1, Arc1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (116), Expect = 1e-07
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 108 EAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVG-HSLSIVDIAIWSAL----- 161
++ + +W + + ++ L TF+V + D+ ++
Sbjct: 23 QSAQAAQWES----VLKSGQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIK 78
Query: 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
D Y++++RW + +
Sbjct: 79 DLVASSKDVKSTYTTYRHILRWIDYMQN 106
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.9 bits (107), Expect = 9e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 25/266 (9%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALL-----NQYFAQRYQGQLIVRFD-----DTNPAKES 297
K + PSGY+H+G+ + + + Y+ + I +D P
Sbjct: 18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVP 77
Query: 298 NEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLI------RQGKAYVDDTPREQM 351
E+ D L I + + +++F E + +
Sbjct: 78 QEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 137
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC 411
+ + + + + + + C + + + V Y+C
Sbjct: 138 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKC 197
Query: 412 NPIPHHRIGSKYKVYPTYD--------FACPFVDAKEGITHALRSSEYHDRNAQYYRIQE 463
+ + G H + S Y +
Sbjct: 198 PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYG 257
Query: 464 DLGVRKVHIYEFSRLNMVYTLLSKRK 489
+ YEF + +S K
Sbjct: 258 KEAPLSLM-YEFVGIKGQKGKMSGSK 282
|
| >d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 4e-04
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 22/110 (20%)
Query: 100 NFYGQNAYEAGEIDEWLD-YTPVFSSGSEFE-------------------NACTYVDKYL 139
+ G E +D +D S E + +D YL
Sbjct: 1 DLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYL 60
Query: 140 ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
R +++G S++ D + LV + A
Sbjct: 61 GGREWLIGMSVTWADFYWEICSTTLLVFKP--DLLDNHPRLVTLRKKVQA 108
|
| >d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (86), Expect = 0.002
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
+ + L+ T++ ++S+ D+ S + ++ +VRWFN+
Sbjct: 60 AVDKIVDIFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNT 119
Query: 187 LSA 189
+ A
Sbjct: 120 VRA 122
|
| >d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSE-------------FENACTYVDKYLE 140
YG++ EA +D D Y + + E + T + +
Sbjct: 2 YGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQG 61
Query: 141 RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+TF+VG +S D + L + + L + LSA
Sbjct: 62 GKTFIVGDQISFADYNLLDLL--LIHEVLAPGCLDAFPLLSAYVGRLSA 108
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 100.0 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 100.0 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 100.0 | |
| d1gtra1 | 209 | Gln-tRNA synthetase (GlnRS), C-terminal (anticodon | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.75 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.68 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.67 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.65 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.64 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.57 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.51 | |
| d1axda1 | 129 | Class phi GST {Maize (Zea mays), type I [TaxId: 45 | 99.47 | |
| d1f2ea1 | 121 | Class beta GST {Sphingomonas paucimobilis [TaxId: | 99.45 | |
| d1nhya1 | 144 | GST-like domain of elongation factor 1-gamma {Bake | 99.44 | |
| d1v2aa1 | 125 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.42 | |
| d1pmta1 | 121 | Class beta GST {Proteus mirabilis [TaxId: 584]} | 99.42 | |
| d1aw9a1 | 135 | Class phi GST {Maize (Zea mays), type III [TaxId: | 99.42 | |
| d1n2aa1 | 121 | Class beta GST {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.4 | |
| d1k0da1 | 151 | Yeast prion protein ure2p, nitrogen regulation fra | 99.4 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.39 | |
| d1jlwa1 | 127 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.38 | |
| d1jlva1 | 123 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.36 | |
| d2cvda1 | 124 | Class sigma GST {Human (Homo sapiens) [TaxId: 9606 | 99.36 | |
| d1e6ba1 | 133 | Class zeta GST {Mouse-ear cress (Arabidopsis thali | 99.36 | |
| d3gtub1 | 140 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1fw1a1 | 125 | Class zeta GST {Human (Homo sapiens) [TaxId: 9606] | 99.32 | |
| d1gnwa1 | 126 | Class phi GST {Mouse-ear cress (Arabidopsis thalia | 99.31 | |
| d2hrkb1 | 118 | GU4 nucleic-binding protein 1, Arc1p {Baker's yeas | 99.31 | |
| d1ljra1 | 165 | Class theta GST {Human (Homo sapiens) [TaxId: 9606 | 99.3 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.3 | |
| d1r5aa1 | 129 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.3 | |
| d2gsqa1 | 127 | Class sigma GST {Squid (Ommastrephes sloani pacifi | 99.29 | |
| d1gwca1 | 138 | Class tau GST {Aegilops tauschii, also known as Tr | 99.28 | |
| d1ljra2 | 79 | Class theta GST {Human (Homo sapiens) [TaxId: 9606 | 99.27 | |
| d1k3ya1 | 142 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.25 | |
| d2a2ra1 | 132 | Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1eema1 | 139 | Class omega GST {Human (Homo sapiens) [TaxId: 9606 | 99.24 | |
| d1b48a1 | 143 | Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax | 99.23 | |
| d1m0ua1 | 127 | Class sigma GST {Fruit fly (Drosophila melanogaste | 99.22 | |
| d2gsta1 | 133 | Class mu GST {Rat (Rattus norvegicus) [TaxId: 1011 | 99.21 | |
| d1v2aa2 | 83 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.2 | |
| d2c4ja1 | 133 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1gula1 | 140 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.18 | |
| d1jlva2 | 84 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.18 | |
| d1axda2 | 80 | Class phi GST {Maize (Zea mays), type I [TaxId: 45 | 99.17 | |
| d1gsua1 | 133 | Class mu GST {Chicken (Gallus gallus) [TaxId: 9031 | 99.16 | |
| d1aw9a2 | 81 | Class phi GST {Maize (Zea mays), type III [TaxId: | 99.16 | |
| d1eema2 | 98 | Class omega GST {Human (Homo sapiens) [TaxId: 9606 | 99.16 | |
| d1r5aa2 | 85 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.15 | |
| d1tu7a2 | 77 | Class pi GST {Onchocerca volvulus [TaxId: 6282]} | 99.13 | |
| d1tw9a1 | 129 | Class sigma GST {Heligmosomoides polygyrus [TaxId: | 99.13 | |
| d1g7oa2 | 75 | Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1gnwa2 | 84 | Class phi GST {Mouse-ear cress (Arabidopsis thalia | 99.11 | |
| d1f2ea2 | 80 | Class beta GST {Sphingomonas paucimobilis [TaxId: | 99.11 | |
| d1e6ba2 | 80 | Class zeta GST {Mouse-ear cress (Arabidopsis thali | 99.09 | |
| d1pmta2 | 80 | Class beta GST {Proteus mirabilis [TaxId: 584]} | 99.09 | |
| d1n2aa2 | 80 | Class beta GST {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1duga1 | 140 | Class alpha GST {Schistosoma japonicum [TaxId: 618 | 99.06 | |
| d2fhea1 | 136 | Class alpha GST {Fasciola hepatica [TaxId: 6192]} | 99.04 | |
| d1okta1 | 126 | Pf GST {Malarial parasite (Plasmodium falciparum) | 99.03 | |
| d1oyja2 | 84 | Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | 99.02 | |
| d1k0da2 | 92 | Yeast prion protein ure2p, nitrogen regulation fra | 99.02 | |
| d2cvda2 | 74 | Class sigma GST {Human (Homo sapiens) [TaxId: 9606 | 99.02 | |
| d2a2ra2 | 77 | Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d2fnoa2 | 87 | Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac | 99.0 | |
| d1fw1a2 | 83 | Class zeta GST {Human (Homo sapiens) [TaxId: 9606] | 98.99 | |
| d1b48a2 | 78 | Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax | 98.99 | |
| d1gula2 | 77 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 98.98 | |
| d2gsqa2 | 75 | Class sigma GST {Squid (Ommastrephes sloani pacifi | 98.98 | |
| d1m0ua2 | 76 | Class sigma GST {Fruit fly (Drosophila melanogaste | 98.97 | |
| d1gwca2 | 83 | Class tau GST {Aegilops tauschii, also known as Tr | 98.95 | |
| d1okta2 | 85 | Pf GST {Malarial parasite (Plasmodium falciparum) | 98.95 | |
| d1tw9a2 | 77 | Class sigma GST {Heligmosomoides polygyrus [TaxId: | 98.93 | |
| d1k3ya2 | 79 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 98.93 | |
| d2c4ja2 | 84 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1oyja1 | 145 | Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | 98.9 | |
| d1oe8a1 | 123 | Class alpha GST {Blood fluke (Schistosoma haematob | 98.88 | |
| d1tu7a1 | 131 | Class pi GST {Onchocerca volvulus [TaxId: 6282]} | 98.88 | |
| d1nhya2 | 75 | GST-like domain of elongation factor 1-gamma {Bake | 98.87 | |
| d1z9ha2 | 113 | Microsomal prostaglandin E synthase-2 {Crab-eating | 98.81 | |
| d1fhea2 | 80 | Class alpha GST {Fasciola hepatica [TaxId: 6192]} | 98.8 | |
| d1duga2 | 80 | Class alpha GST {Schistosoma japonicum [TaxId: 618 | 98.73 | |
| d1k0ma2 | 86 | Chloride intracellular channel 1 (clic1) {Human (H | 98.67 | |
| d1oe8a2 | 81 | Class alpha GST {Blood fluke (Schistosoma haematob | 98.63 | |
| d1k0ma1 | 149 | Chloride intracellular channel 1 (clic1) {Human (H | 98.3 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 98.27 | |
| d1z9ha1 | 161 | Microsomal prostaglandin E synthase-2 {Crab-eating | 98.08 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 95.64 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 95.39 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 94.45 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 94.01 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 93.88 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 93.68 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 93.23 | |
| d1g7oa1 | 140 | Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | 92.22 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 91.38 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 90.73 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 88.76 | |
| d1abaa_ | 87 | Glutaredoxin (Grx, thioltransferase) {Bacteriophag | 88.25 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 80.33 |
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-73 Score=613.22 Aligned_cols=314 Identities=42% Similarity=0.703 Sum_probs=296.1
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
.|+++..++|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||.|| .++
T Consensus 11 ~l~~~~~~~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~~~G~fiLRIEDtD~~R~~~~~~~~I~~dL~WLGl~wD~~~~ 90 (331)
T d1gtra2 11 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVR 90 (331)
T ss_dssp HHHHTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSSCE
T ss_pred HHhcCCCCeEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCcccchHHHHHHHHHHHHhccccccce
Confidence 3566777889999999999999999999999999999999999999999999999999999999999999999999 677
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc----CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM----DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|++++++|+++|+||.|+|+++++++.+. .|.+++||.....+++..++.+..+.......++|++++
T Consensus 91 ~QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 170 (331)
T d1gtra2 91 YSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKID 170 (331)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHHHHTCSCTTSCEEEECSC
T ss_pred ecchHHHHHHHHHHhhhhcCCcccccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHHhhccccCCceEEEEecc
Confidence 8999999999999999999999999999999988763 567899999999999999999999888888899999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEe-e
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY-E 474 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~-~ 474 (758)
..+.+..++|+++.+.....+...+.+++|+|||||||||||++|||||||||+||..+|++|.+|+++||++.|.++ +
T Consensus 171 ~~~~~~~~~d~~~~~~~~~~~d~v~~r~dg~ptY~lA~vVDD~~~gIThViRG~D~l~~T~~q~~l~~~Lg~~~p~~~h~ 250 (331)
T d1gtra2 171 MASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYE 250 (331)
T ss_dssp TTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHSCCSCCCEEEE
T ss_pred cCCCceeEEccceeeeccCCCcccccccccccHHhhhHHHhhhhhcccceecccccccccHHHHHHHHhccCCCCcceee
Confidence 888888899999999998888889999999999999999999999999999999999999999999999999976444 4
Q ss_pred eeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 475 ~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
+.++++.|++||||++..+++++.+.|||||+++||++||++||+|+||++|+...|.|..+..+++..|+.+||+.|++
T Consensus 251 ~~~l~~~g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~nyla~LGws~~d~~~e~~sLe~~~r~~ln~ 330 (331)
T d1gtra2 251 FSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNE 330 (331)
T ss_dssp ECCCCBTTSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCCcccHHhHHHHHHHhccC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999874
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-63 Score=532.59 Aligned_cols=285 Identities=26% Similarity=0.354 Sum_probs=235.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------ccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VTY 320 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~~ 320 (758)
|||||||||||||||||||||++||++||++||+|+|||||||++|+.++|+++|++||+|||++||+ +++
T Consensus 2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRidDtD~~R~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~ 81 (305)
T d1j09a2 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (305)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred eEEecCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCchHHHHHHHHHHHHHhcCcccCCcCCCCCccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999994 579
Q ss_pred ccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHh--cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCC
Q 043341 321 TSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER--MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD 398 (758)
Q Consensus 321 ~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~ 398 (758)
||+|++.|++++++|+++|+||+|+|+++++...+ ..++++.|++.+.+... +.+.. +.+.++|+|++...
T Consensus 82 qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~R~k~~~~~ 154 (305)
T d1j09a2 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAE---ERARR----GEPHVIRLKVPRPG 154 (305)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHH---HHHHT----TCCCEEEECCCSSC
T ss_pred eecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHH---HHhhc----CCcceEEEeccccC
Confidence 99999999999999999999999999999987765 45789999988876542 22332 45678999975432
Q ss_pred C---CCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeee
Q 043341 399 P---NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF 475 (758)
Q Consensus 399 ~---~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~ 475 (758)
. +..+++.+.++.....+ .+..+++|+|+|||||+|||++|||||||||.||+.++++|.+++++||++.|.+||+
T Consensus 155 ~~~~~d~i~~~~~~~~~~~~D-~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~ 233 (305)
T d1j09a2 155 TTEVKDELRGVVVYDNQEIPD-VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHM 233 (305)
T ss_dssp EEEEEETTTEEEEEEGGGSCC-CEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred CccccchhhceeeeccccCCC-eEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhcCCCCceeee
Confidence 1 22334444443221111 1222345889999999999999999999999999999999999999999999999999
Q ss_pred e-eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccccc--ccccHHHH-HHHHHhh
Q 043341 476 S-RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNL--NLMEWDKL-WTINKKI 551 (758)
Q Consensus 476 ~-~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~--~~~d~~~l-~~~n~~~ 551 (758)
. +++..|+|||||+ +.+||++||++||+|+||++|+...|.+..+ ..++++.+ .++|-+.
T Consensus 234 ~l~~~~~g~KLSKr~----------------~~~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~i~~f~~~~ 297 (305)
T d1j09a2 234 PLLRNPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWER 297 (305)
T ss_dssp CCCBCTTSCBCCTTT----------------SCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCCGGG
T ss_pred cccccCccccccccC----------------CccCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHHHHhCCHhh
Confidence 5 6778899999998 3579999999999999999999999988664 34677654 4445555
Q ss_pred ccccCCc
Q 043341 552 IDPVCPR 558 (758)
Q Consensus 552 l~~~~~r 558 (758)
|...++|
T Consensus 298 v~k~~~~ 304 (305)
T d1j09a2 298 VSLGGPV 304 (305)
T ss_dssp CCCSCCB
T ss_pred CCCCCCC
Confidence 6555544
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-62 Score=515.96 Aligned_cols=240 Identities=24% Similarity=0.303 Sum_probs=194.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~ 327 (758)
++||||||||||+|||||||||++||++||++||+|+|||||||++|+.++|+++|+++|+|||+.|| ++++||+|++.
T Consensus 2 ~~~tRFAPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlgl~~d~~~~~QS~r~~~ 81 (286)
T d1nzja_ 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDA 81 (286)
T ss_dssp CCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHH
T ss_pred CceEeeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCCHHHHHHHHHHHHHhhhccccccchhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC----------
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ---------- 397 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~---------- 397 (758)
|++++++|+++|+||+|+|+++++++.+.. +.+.|+...... ....+|++....
T Consensus 82 Y~~~~~~L~~~g~aY~C~ct~~~l~~~~~~-~~~~~~~~~~~~---------------~~~~~r~~~~~~~~~~~~~~~~ 145 (286)
T d1nzja_ 82 YREALAWLHEQGLSYYCTCTRARIQSIGGI-YDGHCRVLHHGP---------------DNAAVRIRQQHPVTQFTDQLRG 145 (286)
T ss_dssp HHHHHHHHHHTTCEEEECCCHHHHHHTTSS-CCCTTTTTCCCS---------------TTCEEEECCSSCCCEEEETTTE
T ss_pred HHHHHHHHHHcCCcccccccHHHHHhhccc-cccccccccchh---------------hhhhhhhcccccccceeeeeee
Confidence 999999999999999999999999887543 345555443221 122333332211
Q ss_pred ----CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEe
Q 043341 398 ----DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY 473 (758)
Q Consensus 398 ----~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~ 473 (758)
..+..+.|||+.|.+ |+||||||||||||+|||||||||+||+.+|++|.+|+++|||+.|.++
T Consensus 146 ~~~~~~~~~~~D~vi~R~d------------g~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~L~~~lg~~~P~y~ 213 (286)
T d1nzja_ 146 IIHADEKLAREDFIIHRRD------------GLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYI 213 (286)
T ss_dssp EEECCHHHHHSCCEEECTT------------SCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEE
T ss_pred eeeeccccccccccccCCC------------CCeeeeehhhhcccccccceecccccccchHHHHHHHHHhhCCCcccee
Confidence 112346899999987 5699999999999999999999999999999999999999999999877
Q ss_pred eee-eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHH
Q 043341 474 EFS-RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEA 522 (758)
Q Consensus 474 ~~~-~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ea 522 (758)
|+. .++..|+|||||++...|++| ||+.+++++|+++|+++++
T Consensus 214 H~pli~~~~g~KLSKr~~~~~i~~~------~~~~~~~~~L~~lG~~~~~ 257 (286)
T d1nzja_ 214 HLPLALNPQGAKLSKQNHAPALPKG------DPRPVLIAALQFLGQQAEA 257 (286)
T ss_dssp EECBCCC-------------CCCSS------CCHHHHHHHHHHTTCCCCS
T ss_pred ecceEEccCCcccccccCccchhcC------CccHHHHHHHHHhCCCCcc
Confidence 775 456778999999998888765 7889999999999987653
|
| >d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Ribosomal protein L25-like superfamily: Ribosomal protein L25-like family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-50 Score=398.50 Aligned_cols=189 Identities=23% Similarity=0.414 Sum_probs=171.5
Q ss_pred CCcchhhhccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccc
Q 043341 556 CPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGN 627 (758)
Q Consensus 556 ~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n 627 (758)
|||+|||+ +|++|+|+|++...+.+.+|+||+++++|+|.+.|++.||||++||+ +|+||++||||+|||
T Consensus 1 ApR~maVl--dPlkv~I~n~~~~~~~~~vp~HPk~~~~G~r~i~~~~~iyIe~~Df~~~~~~~~~rL~~g~~V~L~~~~~ 78 (209)
T d1gtra1 1 APRAMAVI--DPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYV 78 (209)
T ss_dssp CCEECEES--SEEEEEETTCCSSCEEEEEESSTTCGGGCEEEEEECSEEEEEGGGEESSCCSSCCSEESSSEEEETTSCE
T ss_pred CCceEEEc--CCEEEEEEcCCCCeEEEEecCCCCCCccceEEEEecCcEEEehHHhhhccchhheeecCCceeEEeccce
Confidence 79999998 69999999998767788999999999999999999999999999996 699999999999999
Q ss_pred eEEeeeeeCCCCCeEEEEEEEecC------CCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCC
Q 043341 628 AIVKEISRDQDGNVTQLSGFLHLE------GSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCT 701 (758)
Q Consensus 628 ~~~~~~~~~~~g~i~~~~~~~~~~------~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s 701 (758)
++|+++++|++|.|++|.|+|+++ ++.||+|++||||+.. ++++|++++||+||++++|++++||+++|||+|
T Consensus 79 i~~~~v~~d~~g~v~~l~~~~~~~~~~~~~~~~kk~k~~i~Wv~~~-~~v~~~~~~yd~Lf~~~~p~~~~d~~~~iN~~S 157 (209)
T d1gtra1 79 IKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAA-HALPVEIRLYDRLFSVPNPGAADDFLSVINPES 157 (209)
T ss_dssp EEEEEEEECSSSCEEEEEECCCSCCC-----------CEECCEETT-TCEEEEEEEECCSBSSSCGGGSSSSGGGBCTTS
T ss_pred EEeEEEeccCCcceEEEEEEeccccccCCcccceeecccceeccCC-cceeeEEEEeccccccCCcccccchhhhcCCcc
Confidence 999999999999999999999997 4678899999999864 689999999999999999999999999999999
Q ss_pred eeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 702 RFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 702 ~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
+++..||+|+++.++++||+|||||+|||+||+++++.+++| ++.|
T Consensus 158 ~~~~~~~~E~~l~~~k~~d~~QFER~GYF~~D~~~~~~~~~V-fNr~ 203 (209)
T d1gtra1 158 LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV-FNRT 203 (209)
T ss_dssp EEEEEEEECGGGGGCCBTCEEEETTTEEEEECTTTCCSSSCE-EEEE
T ss_pred ceeeeeEEchhHhhCCCCCeEEEEEeeEEEeCCCCCCCCCEE-EEEE
Confidence 999999999999999999999999999999998777777765 7754
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.5e-18 Score=179.52 Aligned_cols=261 Identities=16% Similarity=0.184 Sum_probs=165.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCCcc-------------cchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTNPA-------------KESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dl~~L 311 (758)
.|| -|+|||.+||||+|++++.+.+||- +...|+.-++|-+.+ .....+...+.++++.+
T Consensus 26 yv~--Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~~~~~ 103 (315)
T d1li5a2 26 YVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDAL 103 (315)
T ss_dssp EEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred Eec--CCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhhHHhc
Confidence 444 6999999999999999999999983 444555555665532 22335668889999999
Q ss_pred CCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeE
Q 043341 312 GIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390 (758)
Q Consensus 312 Gi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (758)
++..+ ....++++.+.+.+..++|..+|.+|.............. ...+.+......+ +..+.
T Consensus 104 ~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~-------- 167 (315)
T d1li5a2 104 NILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-PTYGVLSRQDLDQ-------LQAGA-------- 167 (315)
T ss_dssp TCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-TTTTTTTTC------------------------
T ss_pred CCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccc-cccCccccccccc-------cccCC--------
Confidence 99876 5667788999999999999999999832211000000000 0011111100000 11110
Q ss_pred EeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc--cccc-cCccEEeeCCCCCCchHHHHHHHHHh-
Q 043341 391 RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF--VDAK-EGITHALRSSEYHDRNAQYYRIQEDL- 465 (758)
Q Consensus 391 R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v--dD~~-~githvirg~d~~~~~~~~~~l~~al- 465 (758)
+ ...........|++++|......+++...| .++|+|+..++. .|.+ ..++-..-|.++......+......+
T Consensus 168 ~--~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 245 (315)
T d1li5a2 168 R--VDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA 245 (315)
T ss_dssp ---------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHH
T ss_pred c--ccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchhhhcc
Confidence 0 111122335578999998766667766666 677888665543 3444 44555545555554433332222222
Q ss_pred -CCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHH
Q 043341 466 -GVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDK 543 (758)
Q Consensus 466 -g~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~ 543 (758)
+...+.+|.+ ++|.++|+|||||++ .+.|+++|+.. +++|++|+||++. ..+++.+||++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~G~KMSKs~G---------------n~V~~~dlle~-~g~D~lRy~lls~-~~~s~ldFs~e~ 308 (315)
T d1li5a2 246 HDGQYVNYWMHSGMVMVDREKMSKSLG---------------NFFTVRDVLKY-YDAETVRYFLMSG-HYRSQLNYSEEN 308 (315)
T ss_dssp SSSCCEEEECCBCCEEETTBCCCGGGT---------------CCCBHHHHHTT-SCHHHHHHHHHSS-CTTSCEEECHHH
T ss_pred cccccccEEEEEEEEecCCcEecCcCC---------------CcccHHHHHHh-CCHHHHHHHHHcC-CCCCCCCcCHHH
Confidence 3334555555 789999999999997 45699999986 9999999999884 778999999998
Q ss_pred HHHH
Q 043341 544 LWTI 547 (758)
Q Consensus 544 l~~~ 547 (758)
|...
T Consensus 309 l~~a 312 (315)
T d1li5a2 309 LKQA 312 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.1e-16 Score=171.46 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=154.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||.|||||||++++.+.++| +|+..|+..+||.+. .....++.+.+.++++.|
T Consensus 5 ~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 84 (350)
T d1pfva2 5 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 84 (350)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHc
Confidence 56666899999999999999999988887 455567777788763 333457889999999999
Q ss_pred CCCCCCcc--cccCCHHHHHHHHHHHHHhCceeccC-----CchH-H-HH-HHhcCCCCCcCC-------CCC-HHHHHH
Q 043341 312 GIKYETVT--YTSDYFPDLMEMAENLIRQGKAYVDD-----TPRE-Q-MQ-KERMDGIESKCR-------NNS-IEENMK 373 (758)
Q Consensus 312 Gi~~d~~~--~~S~~~~~~~~~~~~Li~~G~aY~~~-----~~~e-~-~~-~~~~~~~~~~~r-------~~~-~~~~~~ 373 (758)
||+++..+ ....+.+..++++++|.++|.+|... |... . +. +....|-.-.|| +.+ .++.+.
T Consensus 85 ~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~~g~~~~~~~~~~~f~~l~~~~~~l~ 164 (350)
T d1pfva2 85 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQ 164 (350)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTTTCCCCEEEEEEEEEECGGGGHHHHH
T ss_pred CCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceeccCCCccceecchheeehHHHHHHHH
Confidence 99998433 33446677788999999999999311 1000 0 00 000001000011 110 111111
Q ss_pred HHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCC------cc-cccccc--ccc-------c---
Q 043341 374 LWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGS------KY-KVYPTY--DFA-------C--- 433 (758)
Q Consensus 374 ~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~------~~-~~~PtY--~~a-------~--- 433 (758)
+...... .....+-++.. ......+|+.+-|.... +.+...+ .| ++-++| ... +
T Consensus 165 ---~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T d1pfva2 165 ---AWTRSGA--LQEQVANKMQE-WFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVS 238 (350)
T ss_dssp ---HHHTTSC--SCHHHHHHHHH-HHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred ---HHhhcCC--CchhhHHHHHH-HhhccCCccccccccccCCccccCCCCcccccccccccchhhhhhccccccccchh
Confidence 1110000 00000000000 00011233333332211 0000000 00 000000 000 0
Q ss_pred ----cccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCc
Q 043341 434 ----PFVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRF 507 (758)
Q Consensus 434 ----~vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~ 507 (758)
...+....+.|+ -|.|+. .|...+.....+++...+ .++.+++|.+.|+|||||++ .+
T Consensus 239 ~~~~~~~~~~~~~~h~-~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~~g~l~~~G~KMSKS~G---------------N~ 302 (350)
T d1pfva2 239 FDEYWKKDSTAELYHF-IGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRG---------------TF 302 (350)
T ss_dssp HHHHHBTTCCSEEEEE-EEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEETTBSCCTTTT---------------CC
T ss_pred hhhccccCCCcceeec-cchhhHHHHHhhHHHHhhhcCCCccceEEecccEEECCeEccCcCC---------------CC
Confidence 001111112343 366654 344455555667776655 45667899999999999996 45
Q ss_pred chHHHHHHcCCCHHHHHHHHHHh-ccccccccccHHHHHHHHHhhc
Q 043341 508 PTVQGIVRRGLLVEALIQFILEQ-GASKNLNLMEWDKLWTINKKII 552 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~~~-g~~~~~~~~d~~~l~~~n~~~l 552 (758)
.++.+|++. ++++++|.|+++. ..+..+.+|+++.|.+.++..|
T Consensus 303 i~~~dll~~-~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~ 347 (350)
T d1pfva2 303 IKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADI 347 (350)
T ss_dssp CBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHC
T ss_pred CCHHHHHHH-CCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHc
Confidence 688999988 9999999999874 4445679999999998766544
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=3.8e-17 Score=175.34 Aligned_cols=237 Identities=14% Similarity=0.207 Sum_probs=151.3
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC----------------------------------
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT---------------------------------- 291 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt---------------------------------- 291 (758)
+==-+|||||+|||||+|+|++++.+|| .+-|.=|.|. .|.
T Consensus 12 vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (348)
T d1f7ua2 12 IEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVR 91 (348)
T ss_dssp EECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHH
T ss_pred EEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhHHHHHHH
Confidence 3344799999999999999999999999 3445555442 111
Q ss_pred ---------C-----------------------cc------cchHHHHHHHHHHHHHhCCCCCCcccccCCHH-HHHHHH
Q 043341 292 ---------N-----------------------PA------KESNEFVDNLLKDIETLGIKYETVTYTSDYFP-DLMEMA 332 (758)
Q Consensus 292 ---------d-----------------------~~------r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~-~~~~~~ 332 (758)
+ ++ .......+.|.+++..||+.+|...+.|+... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~~~~~~~~v~ 171 (348)
T d1f7ua2 92 INKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAI 171 (348)
T ss_dssp HHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccchHHHH
Confidence 0 00 00112346788899999999998888887543 456777
Q ss_pred HHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc-EEEEe
Q 043341 333 ENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP-VYYRC 411 (758)
Q Consensus 333 ~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~-vl~R~ 411 (758)
+.|.++|.+|.. ++++.++.. ..+...|+ |+.|+
T Consensus 172 ~~L~~~~~~~~~------------------------------------------~ga~~~~~~---~~g~~~~~~vl~ks 206 (348)
T d1f7ua2 172 DLFKEKGLTHED------------------------------------------KGAVLIDLT---KFNKKLGKAIVQKS 206 (348)
T ss_dssp HHHHHTTCEEEE------------------------------------------TTEEEEEGG---GTCTTTCEEEEECT
T ss_pred HHHHhhcccccc------------------------------------------CCcccccch---hhccccccceeccC
Confidence 888888888832 124445542 22333455 55688
Q ss_pred CCCCCcccCCcccccccc---ccccccccccc-CccEEee--CCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccc
Q 043341 412 NPIPHHRIGSKYKVYPTY---DFACPFVDAKE-GITHALR--SSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLL 485 (758)
Q Consensus 412 ~~~~~~~~~~~~~~~PtY---~~a~~vdD~~~-githvir--g~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~kl 485 (758)
+|+ +|| |+|.+.+.+.. +.+.+|. |.||..+.++...++++||++.+..++|....+. .||
T Consensus 207 DG~------------~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~~~~~l~~~l~~lg~~~~~~~~h~~~g~v-~kM 273 (348)
T d1f7ua2 207 DGT------------TLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV-QGM 273 (348)
T ss_dssp TSC------------CCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE-ESC
T ss_pred CCc------------cceecchHHhhhhhhhccCCCEEEEecccccchhhhhHHHHHHHhCCCcccceeeecCCcc-ccc
Confidence 877 666 67777777666 6777754 9999999999999999999987654444221111 389
Q ss_pred cchh-----hhhhhhcCccC--------CCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 486 SKRK-----LLWFVQNGKVD--------GWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 486 SKR~-----~~~li~~g~~~--------gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
|||+ +++|+++..-. .-+.+.......+.+. +...||++++++. ...++.+|||++..++
T Consensus 274 StR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~-vgv~ai~y~~L~~-~~~~~~~Fd~d~~l~~ 346 (348)
T d1f7ua2 274 STRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADL-VGISAVMIQDMQG-KRINNYEFKWERMLSF 346 (348)
T ss_dssp CGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHH-HHHHHHHHHHHSS-CTTCCEECCHHHHHCC
T ss_pred cccCCCceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHH-hhHHheehhhhhc-CCCCCCEECHHHhcCC
Confidence 9999 34444431100 0000000011111111 5567888877776 6678899999998764
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.6e-16 Score=170.10 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=151.9
Q ss_pred eee-eccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC----------------------Cc-------
Q 043341 249 KVR-LRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT----------------------NP------- 293 (758)
Q Consensus 249 ~v~-~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt----------------------d~------- 293 (758)
+|+ ==..|||||+|||||+|++++++.+|| .+.|.-|.|. .|. ++
T Consensus 8 ~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (370)
T d1iq0a2 8 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 87 (370)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhhhhh
Confidence 444 445799999999999999999999999 3556666654 111 00
Q ss_pred ----------c-------------------cchHHHHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHhCcee
Q 043341 294 ----------A-------------------KESNEFVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQGKAY 342 (758)
Q Consensus 294 ----------~-------------------r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~G~aY 342 (758)
+ .........++++|..||+.+|...+.|+.+. .+.+.+..|.+.|.+|
T Consensus 88 y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l~~~~~~~ 167 (370)
T d1iq0a2 88 YVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVF 167 (370)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeecccccccchhhhHhhhhhcccee
Confidence 0 00112335567888999999998877776432 4677788888888888
Q ss_pred ccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCc
Q 043341 343 VDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSK 422 (758)
Q Consensus 343 ~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~ 422 (758)
.... + ....++.++.....+.....|+|+.|+||++.+.+.
T Consensus 168 ~~~~----------------------------------~---~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~-- 208 (370)
T d1iq0a2 168 RPRE----------------------------------G---KYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAK-- 208 (370)
T ss_dssp CCSS----------------------------------S---TTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHH--
T ss_pred eccc----------------------------------c---ccceEEEecCccccccccCcceeeEeccCCceEecc--
Confidence 4221 0 112345554432223345567899999988443332
Q ss_pred ccccccccccccccc--------------------------c---ccCccEEee--CCCCCCchHHHHHHHHHhCCC---
Q 043341 423 YKVYPTYDFACPFVD--------------------------A---KEGITHALR--SSEYHDRNAQYYRIQEDLGVR--- 468 (758)
Q Consensus 423 ~~~~PtY~~a~~vdD--------------------------~---~~githvir--g~d~~~~~~~~~~l~~alg~~--- 468 (758)
|+|++++. | ..+++.+|- +.++..|-.+-..+++++|+.
T Consensus 209 -------DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~ 281 (370)
T d1iq0a2 209 -------DIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALA 281 (370)
T ss_dssp -------HHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHhhhcccccccceeccccCccceeEeeccccccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCCchh
Confidence 33332211 1 123343332 666665655666678889985
Q ss_pred -cceEeeeeeeecccccccchh-----hhhhhhcCcc--------CCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc
Q 043341 469 -KVHIYEFSRLNMVYTLLSKRK-----LLWFVQNGKV--------DGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534 (758)
Q Consensus 469 -~p~~~~~~~l~~~~~klSKR~-----~~~li~~g~~--------~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~ 534 (758)
......|+++...|+|||||+ +.+|+++..- .+.|.+. ...+.+. +...||++++++. ...
T Consensus 282 ~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~---~~~~a~~-vgi~avky~~L~~-~~~ 356 (370)
T d1iq0a2 282 EKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPD---KEEAARM-VALGAIRFSMVKT-EPK 356 (370)
T ss_dssp TTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSC---HHHHHHH-HHHHHHHHHHHHS-CTT
T ss_pred hceeeEEEEEEecCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchh---HHHHHHH-hhhhheehhHhhc-CCC
Confidence 235666788888999999998 4555544210 0222222 1222222 5778899998886 677
Q ss_pred ccccccHHHHHHH
Q 043341 535 NLNLMEWDKLWTI 547 (758)
Q Consensus 535 ~~~~~d~~~l~~~ 547 (758)
++..|||++..++
T Consensus 357 ~~~~Fd~d~~lsf 369 (370)
T d1iq0a2 357 KQIDFRYQEALSF 369 (370)
T ss_dssp SCEEECHHHHHCS
T ss_pred CCceECHHHhccC
Confidence 8899999998653
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1.2e-17 Score=174.23 Aligned_cols=272 Identities=11% Similarity=-0.027 Sum_probs=129.0
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC---C--
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE---T-- 317 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d---~-- 317 (758)
.++++..+|||||+|||||+|++++++.+|| ++++.++.+++|++............ ..++.+-... .
T Consensus 18 ~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 95 (317)
T d1irxa2 18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQE--WKDYLGMPISEVPDPW 95 (317)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGG--GGGGTTSBGGGSCCTT
T ss_pred CeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHHhhhhh--HHHhccCccccccccc
Confidence 4688889999999999999999999999887 46678999999999765433211111 1112221111 1
Q ss_pred cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHH--HHHHHHHHHhcCccCC--ceeeEEee
Q 043341 318 VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIE--ENMKLWKEMIAGSERG--LECCLRGK 393 (758)
Q Consensus 318 ~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~g~~~~--~~~~~R~k 393 (758)
....+.........-..+.+.+..|.+.+..+.............+...... ................ ........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (317)
T d1irxa2 96 GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYC 175 (317)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEEC
T ss_pred ccccccchhhhhHHhhHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcccccceeeeeccccccccccccchhh
Confidence 1112223333444444455556666433222222111000000000000000 0000000000000000 00000000
Q ss_pred ecCCC---CCCCCCCcEEEEeCC-CCCcccCCcc-cccccc-------cccccccccccCccEEeeCCCCCCchHHHHHH
Q 043341 394 LDMQD---PNKSLRDPVYYRCNP-IPHHRIGSKY-KVYPTY-------DFACPFVDAKEGITHALRSSEYHDRNAQYYRI 461 (758)
Q Consensus 394 ~~~~~---~~~~~~D~vl~R~~~-~~~~~~~~~~-~~~PtY-------~~a~~vdD~~~githvirg~d~~~~~~~~~~l 461 (758)
..... ......+...+..+. ........++ .+.+.| .+...++.|..|.+|+ ..|..+.+.+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~---~~~~~~~~~~~~~ 252 (317)
T d1irxa2 176 PEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHL---VAGSSYDTGKEII 252 (317)
T ss_dssp TTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHH---STTSHHHHHHHHH
T ss_pred hccccccccccccccccceeeecccccccccccccCCcccccccchhhhccCceeEEEecceec---ccchhhhHhhhhh
Confidence 00000 000001111111111 1111122222 233333 2334444555555544 3445566778888
Q ss_pred HHHhCCCcceEeeeeeeeccc--ccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccc
Q 043341 462 QEDLGVRKVHIYEFSRLNMVY--TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLM 539 (758)
Q Consensus 462 ~~alg~~~p~~~~~~~l~~~~--~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~ 539 (758)
+.++|+..|.+++|++|.++| .|||||+++ ..++.+|++. ++++++|+|++.. ...++.+|
T Consensus 253 ~~~~g~~~~~~~~~~~l~l~ge~~KMSkrkGn---------------~I~~~dll~~-~~~d~~Ry~~l~~-~~~~~i~F 315 (317)
T d1irxa2 253 KEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN---------------VILLSDLYEV-LEPGLVRFIYARH-RPNKEIKI 315 (317)
T ss_dssp HHHHCCCCCBCCEECCEEESCC---------C---------------CCCHHHHHTT-SCHHHHHHHHHSS-CTTSCEEE
T ss_pred hhhcCCCCcEEEEEEEEEECCccccccCCCCc---------------cccHHHHHHH-CCHHHHHHHhcCC-CCCCCcCC
Confidence 999999999888888888865 599999973 4588888885 9999999988876 45667777
Q ss_pred cH
Q 043341 540 EW 541 (758)
Q Consensus 540 d~ 541 (758)
|+
T Consensus 316 Dl 317 (317)
T d1irxa2 316 DL 317 (317)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=2.8e-15 Score=159.94 Aligned_cols=279 Identities=12% Similarity=0.069 Sum_probs=150.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||+|||||+|++++.+.+|| +|...||...||.+. ......+...+.++++.+
T Consensus 6 ~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (348)
T d2d5ba2 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (348)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhc
Confidence 56777899999999999999999988887 456677778888653 344567889999999999
Q ss_pred CCCCCCccc-ccC-CHHHHHHHHHHHHHhCceecc--------CCchHHHHHHhcCCCCCcCCC-----------CCH--
Q 043341 312 GIKYETVTY-TSD-YFPDLMEMAENLIRQGKAYVD--------DTPREQMQKERMDGIESKCRN-----------NSI-- 368 (758)
Q Consensus 312 Gi~~d~~~~-~S~-~~~~~~~~~~~Li~~G~aY~~--------~~~~e~~~~~~~~~~~~~~r~-----------~~~-- 368 (758)
|+.++.... .+. ..+..+.++.+++++|.+|.. .|................+.. ...
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (348)
T d2d5ba2 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEK 165 (348)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGG
T ss_pred CccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccccccCCCceEEecccccccchHh
Confidence 999985333 333 445677788899999998831 121100000000000000000 000
Q ss_pred -HHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-----cccccc------cccccc-
Q 043341 369 -EENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-----KVYPTY------DFACPF- 435 (758)
Q Consensus 369 -~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-----~~~PtY------~~a~~v- 435 (758)
...+..+ ...+.........+-.. .......+.|...++.... ..|+-.. .+.-+| .++...
T Consensus 166 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (348)
T d2d5ba2 166 YRPWLQEY--IQENPDLIRPEGYRNEV-LAMLAEPIGDLSISRPKSR--VPWGIPLPWDENHVTFVWFDALLNYVSALDY 240 (348)
T ss_dssp GHHHHHHH--HHTCTTSEESHHHHHHH-HHHHTSCCCCEECEEETTT--CCSSCEETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred hhhhHHHh--hhccccccccccccccc-ccccccccccccccccccc--CCCCcccccCCcccccchhccchhhhhhhcC
Confidence 1111100 00010000000000000 0001123345555544321 1111100 011111 111100
Q ss_pred ---cccc--cCccEEeeCCCCCC-chHHHHHHHHHhCCC-cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCc
Q 043341 436 ---VDAK--EGITHALRSSEYHD-RNAQYYRIQEDLGVR-KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRF 507 (758)
Q Consensus 436 ---dD~~--~githvirg~d~~~-~~~~~~~l~~alg~~-~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~ 507 (758)
++.. .....-+-|.++.. +...+.....+.+.. .+.++.+ ..|...|+|||||++ .+
T Consensus 241 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~G---------------n~ 305 (348)
T d2d5ba2 241 PEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLG---------------NV 305 (348)
T ss_dssp TTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTT---------------CC
T ss_pred CchhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCC---------------cc
Confidence 0000 00111223666553 333333333444554 3455555 468889999999997 45
Q ss_pred chHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 508 PTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.|+.+|++. ++++++|.|+++....+++.+|+++.|.+.++
T Consensus 306 i~~~ell~~-~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n 346 (348)
T d2d5ba2 306 VDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (348)
T ss_dssp CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred cCHHHHHHH-CCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHc
Confidence 689999988 99999999998876778889999999977643
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1e-13 Score=152.09 Aligned_cols=88 Identities=10% Similarity=-0.090 Sum_probs=67.9
Q ss_pred eeCCCCC-CchHHHHHHHHHhCCCcc--eEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 446 LRSSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 446 irg~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
+-|.|.. .|.....++..+++...| .++.+++ |+.+|+|||||+++ +.+++++++. ++++
T Consensus 333 ~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~hg~~L~~~G~KMSKS~Gn---------------~I~~~e~l~~-~g~D 396 (425)
T d1ivsa4 333 VTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGN---------------VIDPLEMVER-YGAD 396 (425)
T ss_dssp EEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSSBCBTTTTB---------------CCCHHHHHHH-HCHH
T ss_pred EEEehhhhHHHHHHHHHHHHhcCCCccceEEEcceEECCCCCCcCCCCCC---------------CcCHHHHHHH-cCch
Confidence 3478855 566666666667665544 4555555 78889999999963 4588999988 9999
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHH
Q 043341 522 ALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 522 al~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
++|.|+++......+++||++.+...++
T Consensus 397 ~lR~~L~~~~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 397 ALRFALIYLATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp HHHHHHHHHCCTTCCEECCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCccCHHHhhhccC
Confidence 9999999887777889999999987664
|
| >d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type I [TaxId: 4577]
Probab=99.47 E-value=3.1e-14 Score=129.79 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=82.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcccCCCCCH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFVVGHSLSI 152 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~flvG~~lTl 152 (758)
|+|+|+.+|+++++|++|..+.+.+ +.+...++.||.+|++++||+|+++|+
T Consensus 3 L~~~d~~erA~v~~Wl~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~Tl 82 (129)
T d1axda1 3 LREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSL 82 (129)
T ss_dssp GTTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSCCH
T ss_pred CCCCCHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Confidence 6789999999999999987766542 567889999999999999999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 153 ADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
|||++++.+.++...... .....||+|.+|+++|.++ |+|+++++
T Consensus 83 ADi~~~~~~~~~~~~~~~-~~~~~~P~l~~w~~~~~~r--Ps~k~~~~ 127 (129)
T d1axda1 83 ADLNHVSVTLCLFATPYA-SVLDAYPHVKAWWSGLMER--PSVQKVAA 127 (129)
T ss_dssp HHHTTHHHHHHHTTSGGG-GGGGGCHHHHHHHHHHHHS--HHHHHHHH
T ss_pred ccHHHHHHHHHHHHcccc-cchhhCHHHHHHHHHHHcC--HHHHHHHh
Confidence 999999999986332222 2357899999999999999 99999976
|
| >d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Sphingomonas paucimobilis [TaxId: 13689]
Probab=99.45 E-value=5.8e-14 Score=126.76 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=84.1
Q ss_pred CCCCC-CHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 100 NFYGQ-NAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 100 ~L~p~-~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
+|+|. ++.+|+++.+|+.|+.+.+.+ +.+.+.++.||++|++++|++|+++|+|||++++
T Consensus 1 GL~P~~g~~~Ra~~~~wl~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~TiaDi~~~~ 80 (121)
T d1f2ea1 1 GLAPAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLYV 80 (121)
T ss_dssp CSSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHSCSSSSSSSCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCCchhcCCCHHHHHHHH
Confidence 47785 689999999999999887653 5788899999999999999999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.+. ...+.+ ...||||.+|+++|.++ |+|++++++
T Consensus 81 ~~~~~--~~~~~~-~~~~p~l~~w~~~~~~r--pa~~~al~~ 117 (121)
T d1f2ea1 81 MLGWP--AYVGID-MAAYPALGAYAGKIAQR--PAVGAALKA 117 (121)
T ss_dssp HTTSG--GGGTCC-GGGCHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred HHHHH--HHcCCC-hhhCHHHHHHHHHHHCC--HHHHHHHHh
Confidence 99875 223343 57899999999999999 999999875
|
| >d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=3.4e-14 Score=132.41 Aligned_cols=102 Identities=15% Similarity=0.229 Sum_probs=86.1
Q ss_pred CCC--CCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 101 FYG--QNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 101 L~p--~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
|+| .|+.+|+++++|+.|.++.+.+ ..+.+.|+.||++|++++||+|+++|+||
T Consensus 8 lL~~~~d~~~ra~v~~Wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~l~Gd~~T~AD 87 (144)
T d1nhya1 8 LLGADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLAD 87 (144)
T ss_dssp HTCCTTCHHHHHHHHHHHHHHHTTTTGGGGGTHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccch
Confidence 444 4789999999999998887663 66788999999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhhc
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVS 204 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~ 204 (758)
|++++.+.++.....+....+.||+|.+|+++|.++ |+|+++++++..
T Consensus 88 i~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~--p~~k~~~~~~~~ 135 (144)
T d1nhya1 88 LVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRAS--PFLKDEYKDFKF 135 (144)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHCHHHHHHHHHHHHS--TTTGGGCTTCCC
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC--HHHHHHhcccCh
Confidence 999999987533333333467899999999999999 999999877643
|
| >d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]
Probab=99.42 E-value=1.4e-13 Score=124.97 Aligned_cols=95 Identities=12% Similarity=0.323 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhccccCCh--------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG--------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
.||.+||.|+||+.|..+.+.+ +.+.+.|+.||++|++++||+|+++|+|||++++.+.+
T Consensus 1 kDp~~RA~v~q~l~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~T~ADi~l~~~~~~ 80 (125)
T d1v2aa1 1 KDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAADHLTVADICLLGTVTA 80 (125)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhCCCCccCCCCCcHHHHHHHHHHHH
Confidence 4899999999999987776553 67888999999999999999999999999999999998
Q ss_pred hhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 164 TGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 164 l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+. ..+.+ .+.||||.+|+++|.++. |+++++.++.
T Consensus 81 ~~--~~~~~-~~~~P~l~~w~~r~~~~~-P~~~e~~~~~ 115 (125)
T d1v2aa1 81 LN--WLKHD-LEPFPHIRAWLERVRAEM-PDYEEFSKQV 115 (125)
T ss_dssp GG--TTTCC-CTTCHHHHHHHHHHHTTS-TTHHHHHHHH
T ss_pred HH--HcCCC-cccCHHHHHHHHHHHHhC-chHHHHHHHH
Confidence 63 23333 578999999999998732 9999998763
|
| >d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Proteus mirabilis [TaxId: 584]
Probab=99.42 E-value=1.5e-13 Score=124.03 Aligned_cols=96 Identities=14% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
|.|.++.+|+++.+|+.|..+.+++ +.+.+.+..||++|++++|++|+++|+|||++++.+
T Consensus 3 l~p~~~~~Ra~~~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~ 82 (121)
T d1pmta1 3 IAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLFTLS 82 (121)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHTTHHHHGGGGCSSSCTTTHHHHHHHHHHHHHHHHHHHTTSSBTTBSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCHHHHHHHHHH
Confidence 5678999999999999998877652 678889999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.. ..+.+ ...||+|.+|+++|.++ |+|++++++
T Consensus 83 ~~~~--~~~~~-~~~~p~l~~w~~r~~~r--Pa~~~al~~ 117 (121)
T d1pmta1 83 QWAP--HVALD-LTDLSHLQDYLARIAQR--PNVHSALVT 117 (121)
T ss_dssp SSTG--GGTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHH--Hhccc-cccCHHHHHHHHHHHcC--HHHHHHHHH
Confidence 9863 23333 57899999999999999 999999865
|
| >d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type III [TaxId: 4577]
Probab=99.42 E-value=7.1e-14 Score=128.64 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=85.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcccCCCCC
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFVVGHSLS 151 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~flvG~~lT 151 (758)
+|+|.++ +||++++|++|..+.+.+ +.+.+.++.||++|++++||+|+++|
T Consensus 3 ~l~P~~~-~rA~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~s 81 (135)
T d1aw9a1 3 DLLPATA-SAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDEFT 81 (135)
T ss_dssp CSSCTTS-CHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSSCC
T ss_pred CCCCCCH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCcchhhcccc
Confidence 5899887 799999999998877652 56778899999999999999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~ 203 (758)
+|||++++.+.++.... .....+.||||.+|+++|.++ |+|+++++.+.
T Consensus 82 lADi~~~~~l~~~~~~~-~~~~~~~~P~l~~w~~~v~~r--P~~k~~l~~~~ 130 (135)
T d1aw9a1 82 LADANHASYLLYLSKTP-KAGLVAARPHVKAWWEAIVAR--PAFQKTVAAIP 130 (135)
T ss_dssp HHHHTTHHHHHHHHTST-TTHHHHTSHHHHHHHHHHHHS--HHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHcC-chhhhhhcHHHHHHHHHHHcC--HHHHHHHHhCC
Confidence 99999999999863222 222367899999999999999 99999998764
|
| >d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.8e-13 Score=123.39 Aligned_cols=96 Identities=15% Similarity=0.313 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
|.|.+..+|+++++|+.|+.+.+++ +.+...++.||++|++++|++|+++|+|||++++.+
T Consensus 3 l~P~~~~~Ra~~~~wl~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~s~ADi~l~~~~ 82 (121)
T d1n2aa1 3 LAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVL 82 (121)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHTHHHHHHHHCSSSCGGGHHHHHHHHHHHHHHHHHHTTTSSCSSSSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccHHHHHHHHHH
Confidence 5688899999999999999887763 678889999999999999999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.++.. .+.+ .+.||+|.+|+++|.++ |+|++++++
T Consensus 83 ~~~~~--~~~~-~~~~p~l~~w~~ri~~r--pav~~~l~~ 117 (121)
T d1n2aa1 83 RWAYA--VKLN-LEGLEHIAAFMQRMAER--PEVQDALSA 117 (121)
T ss_dssp HHHHH--TTCC-CTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHH--cCCC-cccCHHHHHHHHHHHCC--HHHHHHHHH
Confidence 98632 3333 57899999999999999 999999864
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=9.5e-14 Score=153.55 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHH
Q 043341 466 GVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKL 544 (758)
Q Consensus 466 g~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l 544 (758)
+.+...++.|++ |+.+|+|||||++ ...++.+++++ |+++++|.|++..+...++++|+++.|
T Consensus 383 ~~~~~~v~~hg~iL~~~G~KMSKS~g---------------n~I~~~dll~~-ygaD~lR~yl~~~~~~~~d~~Fs~~~~ 446 (452)
T d1ilea3 383 SIAFKNVICHGLILDEKGQKMSKSKG---------------NVVDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLV 446 (452)
T ss_dssp SCSBSEEEEECCEECTTSSCCCTTTT---------------CCCCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHH
T ss_pred CCCCCeEEEeeEEECCCCcccCCCCC---------------CCcCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 344455666665 6889999999996 34588999998 999999999999888889999999999
Q ss_pred HHHHH
Q 043341 545 WTINK 549 (758)
Q Consensus 545 ~~~n~ 549 (758)
....|
T Consensus 447 ~e~~~ 451 (452)
T d1ilea3 447 RETVR 451 (452)
T ss_dssp HHHHH
T ss_pred hHHhc
Confidence 87765
|
| >d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Yeast prion protein ure2p, nitrogen regulation fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=6.6e-14 Score=131.39 Aligned_cols=95 Identities=11% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-------------------------------------------------------
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG------------------------------------------------------- 125 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~------------------------------------------------------- 125 (758)
|||+|+.+|+++++|+.|..+.+.|
T Consensus 1 L~P~d~~era~v~~WL~~~~~~l~P~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (151)
T d1k0da1 1 LWSDDLADQSQINAWLFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVMELDTENAA 80 (151)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence 7899999999999999998877632
Q ss_pred -HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 -SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 -~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+...+..+|.+|++++||+|+++|+|||++++.+.+.. ..+....+.||||.+|+++|.++ |+|++++
T Consensus 81 ~~~~~~~~~~l~~~L~~~~~l~Gd~~TiADi~~~~~~~~~~--~~~~~~~~~~P~v~~w~~r~~~r--Pav~kal 151 (151)
T d1k0da1 81 AYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVD--RIGINIKIEFPEVYKWTKHMMRR--PAVIKAL 151 (151)
T ss_dssp --------------CCCCCCSSTTSCCHHHHTTHHHHTTGG--GGTCCHHHHCHHHHHHHHHHHTC--HHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCeecCCcccHHHHHHHHHHHHHH--HcCCCccccCHHHHHHHHHHHhC--HHHHhHC
Confidence 2334556788999999999999999999999999998753 23333346799999999999999 9999874
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.39 E-value=1.5e-12 Score=139.03 Aligned_cols=277 Identities=11% Similarity=0.007 Sum_probs=150.3
Q ss_pred eeeccCCCCCCCccchhhHH-HHHHHHHHc-----ccCceEEEEecCCC-------------cccchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKA-ALLNQYFAQ-----RYQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~-al~n~~~Ar-----~~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~ 310 (758)
+||==+|+|||+|||||+|. .+..+.++| +|+..|+...||.+ ++.....+...+.+++..
T Consensus 5 ~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~ 84 (361)
T d1rqga2 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (361)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccccc
Confidence 55666799999999999775 566788777 45667777777743 344456788999999999
Q ss_pred hCCCCCCcccc--cCCHHHHHHHHHHHHHhCceeccC-----Cch-HHHHHHhcCCCCCcCCCC-----------CHHHH
Q 043341 311 LGIKYETVTYT--SDYFPDLMEMAENLIRQGKAYVDD-----TPR-EQMQKERMDGIESKCRNN-----------SIEEN 371 (758)
Q Consensus 311 LGi~~d~~~~~--S~~~~~~~~~~~~Li~~G~aY~~~-----~~~-e~~~~~~~~~~~~~~r~~-----------~~~~~ 371 (758)
+++.++..... ..+.+..+.+...+.++|.+|... |.. +.+.. .....|-.. ..+..
T Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~f~~~~~~ 160 (361)
T d1rqga2 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLP----DRFAICGRPISFRDSAHYYIKMQDF 160 (361)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCC----GGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred cccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecc----cccccCCCcccccccceEEEecchh
Confidence 99999844332 224455677888899999987321 000 00000 000111000 00000
Q ss_pred H-HHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCC--CCcccCCcc----------------------ccc
Q 043341 372 M-KLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPI--PHHRIGSKY----------------------KVY 426 (758)
Q Consensus 372 ~-~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~--~~~~~~~~~----------------------~~~ 426 (758)
. ++.+........ +...+... ..-...+.|+.+-|...- +.|.+.... .+.
T Consensus 161 ~~~l~~~~~~~~~~--~~~~~~~~--~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (361)
T d1rqga2 161 AERLKRWIEKQPWK--PNVKNMVL--SWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKR 236 (361)
T ss_dssp HHHHHHHHHSSCCC--HHHHHHHH--HHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHH
T ss_pred hhhhhhcccccccc--cchhhhhh--hccccccccccccccccccccCccccccCCCeEEEeecccccccccccccCccc
Confidence 0 000000000000 00000000 000123456666665322 222221111 123
Q ss_pred ccccccccccc-cccCc---cEEeeCCCCC-CchHHHHHHHHHhC----------CCcce-Eeeeeeeecccccccchhh
Q 043341 427 PTYDFACPFVD-AKEGI---THALRSSEYH-DRNAQYYRIQEDLG----------VRKVH-IYEFSRLNMVYTLLSKRKL 490 (758)
Q Consensus 427 PtY~~a~~vdD-~~~gi---thvirg~d~~-~~~~~~~~l~~alg----------~~~p~-~~~~~~l~~~~~klSKR~~ 490 (758)
|.|+..+.... ...+- .|.+ |.|.. .+......+..++| +..|. +..+++|.++|+|||||++
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~~~~-g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlG 315 (361)
T d1rqga2 237 IGKPNEWKKYWLNIDGQTRVIHFI-GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRN 315 (361)
T ss_dssp TTCTTTTHHHHBCSSCCEEEEEEE-EGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTT
T ss_pred CCchhHHHHhhhhccCCcceEEec-cccccccchhhHHHHHHHhhccccccccccCCCCCEEEEeeeEEeCCEecCCCCC
Confidence 34433322111 11111 1222 55543 23333344444544 22333 3346889999999999997
Q ss_pred hhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 491 LWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 491 ~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
+ ..++.++++. |+++++|.|+++......+.+|+++.|.+.++..
T Consensus 316 N---------------~I~~~d~i~~-yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~ 360 (361)
T d1rqga2 316 W---------------AIWVHEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEE 360 (361)
T ss_dssp B---------------SCBHHHHTTT-SCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHT
T ss_pred C---------------CCCHHHHHHH-cCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhccC
Confidence 4 4588888888 9999999999988777888999999998776654
|
| >d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]
Probab=99.38 E-value=3.4e-13 Score=122.72 Aligned_cols=93 Identities=18% Similarity=0.349 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhccccCCh-----------------------HHHHHHHHHHHHhcccCCccc-CCCCCHhHHHHHH
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG-----------------------SEFENACTYVDKYLERRTFVV-GHSLSIVDIAIWS 159 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~-----------------------~~l~~~L~~Le~~L~~~~flv-G~~lTlADi~l~~ 159 (758)
+|+.+||+++|||.|..+.+.+ +.+.+.|+.||++|++++||+ |+++|+|||++++
T Consensus 1 sDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~la~Gd~~TiADi~~~~ 80 (127)
T d1jlwa1 1 SDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSILA 80 (127)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSTTCCSSCCHHHHHHHHHHHHHHHHHTTTCSSTTCSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHhccCCceeccCccchhhHHHHH
Confidence 5899999999999997766542 678888999999999999996 9999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.++. ..+.+ .+.||+|.+|+++|+++ |.+.+...+
T Consensus 81 ~~~~~~--~~~~~-~~~~P~l~~w~~rl~~~--p~~~~~~~~ 117 (127)
T d1jlwa1 81 TIATYE--VAGYD-LRRYENVQRWYERTSAI--VPGADKNVE 117 (127)
T ss_dssp HHHHHH--HTTCC-GGGSHHHHHHHHHHHHH--STTHHHHHH
T ss_pred HHHHHH--HcCCC-hhhChHHHHHHHHHHcc--CchHHHHHH
Confidence 999873 23343 57899999999999999 877766443
|
| >d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]
Probab=99.36 E-value=5.4e-13 Score=120.44 Aligned_cols=93 Identities=14% Similarity=0.368 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHh
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~ 162 (758)
.||.+||++++||.|..+.+.+ +.+...++.||.+|++++||+|+++|+|||++++.+.
T Consensus 1 kDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~S~ADi~l~~~l~ 80 (123)
T d1jlva1 1 KDPQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVLATVS 80 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHTSSCSSSSTTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHccCCCcCCccchhhHHHHHHHHH
Confidence 4789999999999997776552 5678899999999999999999999999999999999
Q ss_pred hhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.. .+.+ +..||+|.+|+++|+++ |.+.++...
T Consensus 81 ~~~~--~~~~-~~~~p~l~~w~~r~~~~--~~~~~~~~~ 114 (123)
T d1jlva1 81 TYDV--AGFE-LAKYPHVAAWYERTRKE--APGAAINEA 114 (123)
T ss_dssp HHHH--TTCC-GGGSHHHHHHHHHHHHH--STTHHHHHH
T ss_pred HHHH--cCCC-cccCHHHHHHHHHHHcc--CchHHHHHH
Confidence 8732 3333 57899999999999998 767666543
|
| >d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.6e-13 Score=120.72 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCC--------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSS--------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~--------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
.|+|+++.|++++++|++.+...+. ...+...+..||+.|++++|++|+++|+||+++|+
T Consensus 1 dL~Gk~~~E~a~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~G~~~T~aDi~l~~ 80 (124)
T d2cvda1 1 DLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEI 80 (124)
T ss_dssp TTSCSSHHHHHHHHHHHHHHHHHHHTSCTTCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcCcHHHHHHHH
Confidence 4899999999999999886554322 14567789999999999999999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.++... +....+.||+|.+|+++|.++ |++++++++
T Consensus 81 ~l~~~~~~--~~~~~~~~P~L~~~~~rv~~~--P~vk~yl~~ 118 (124)
T d2cvda1 81 CSTTLLVF--KPDLLDNHPRLVTLRKKVQAI--PAVANWIKR 118 (124)
T ss_dssp HHHHHHHH--CTTTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHh--hhhhhhhhHHHHHHHHHHHhC--HHHHHHHHH
Confidence 99987332 333467899999999999999 999999976
|
| >d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.36 E-value=5.7e-13 Score=122.07 Aligned_cols=98 Identities=9% Similarity=0.117 Sum_probs=81.7
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccC--CcccCCCCCHh
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERR--TFVVGHSLSIV 153 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~--~flvG~~lTlA 153 (758)
+|+|+|+.+||++++|+.|+.+.+.+ ..+...+..||..|+.+ +|++|+++|+|
T Consensus 1 PLlP~Dp~~RA~vr~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lE~~L~~~~~~~~~Gd~~slA 80 (133)
T d1e6ba1 1 PLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLA 80 (133)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHTTCC-------------------CCCCCHHHHHHHHHHHHHHTTSCSSBTTBSSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCcCcchhHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeeCCcCcch
Confidence 58999999999999999998887652 45788899999999764 79999999999
Q ss_pred HHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 154 DIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 154 Di~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
||++++.+..... ..+++ .+.||+|.+|+++|.++ |+|++++.+
T Consensus 81 Di~l~~~~~~~~~-~~~~d-~~~~P~l~aw~~r~~~r--Pa~~~a~p~ 124 (133)
T d1e6ba1 81 DLFLAPQIHGAIN-RFQIN-MEPYPTLAKCYESYNEL--PAFQNALPE 124 (133)
T ss_dssp HHHHHHHHHHHHH-HHCCC-CTTCHHHHHHHHHHTTC--HHHHHHSGG
T ss_pred HHHHHHHHHHHHH-Hhhhh-hccCcHHHHHHHHHHCC--HHHHHhCcc
Confidence 9999999876421 22343 67899999999999999 999987543
|
| >d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1e-12 Score=121.54 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=85.8
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHH
Q 043341 97 RVGNFYGQNAYEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 97 ~~~~L~p~~~~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~ 158 (758)
|+++|+|+++.|++++++|+..+...... +.+...|+.||.+|++++||+|+++|+||+++|
T Consensus 1 Rk~~L~G~t~~E~a~vd~~~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~Gd~~T~AD~~l~ 80 (140)
T d3gtub1 1 RKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTY 80 (140)
T ss_dssp HHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHhcCCCCeeecCCcchhHHHHH
Confidence 35579999999999999998876654331 567778999999999999999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+.++.. ......+.||+|.+|+++|.++ |.+++.+++
T Consensus 81 ~~l~~~~~--~~~~~~~~~P~L~~~~~rv~~~--P~Ik~yl~s 119 (140)
T d3gtub1 81 DILDQNRI--FDPKCLDEFPNLKAFMCRFEAL--EKIAAYLQS 119 (140)
T ss_dssp HHHHHHHH--HCGGGGTTCHHHHHHHHHHHTS--HHHHHHHHC
T ss_pred HHHHHHHH--cCccchhcChHHHHHHHHHHcC--HHHHHHHhc
Confidence 99998632 2333468899999999999999 999999986
|
| >d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=8.2e-13 Score=119.53 Aligned_cols=95 Identities=9% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh--------------------HHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG--------------------SEFENACTYVDKYLER--RTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~ 158 (758)
|+|.|+.+|+++++|+.|+.+.+.+ ..+...+..+|.+|.. ++|++|+++|+|||+++
T Consensus 1 LlP~dp~~RA~v~~w~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~Gd~~tlADi~l~ 80 (125)
T d1fw1a1 1 LLPQDPKKRASVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGDEVTMADLCLV 80 (125)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTGGGGCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHBSSSSSBTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCeecCCCcchHHHHHH
Confidence 7899999999999999999887763 4456778888888853 57999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.++.. .+.+ .+.||+|.+|+++|.++ |+|++++.
T Consensus 81 ~~~~~~~~--~~~~-~~~~P~l~aw~~r~~~r--Pa~~~a~p 117 (125)
T d1fw1a1 81 PQVANAER--FKVD-LTPYPTISSINKRLLVL--EAFQVSHP 117 (125)
T ss_dssp HHHHHHHH--TTCC-CTTCHHHHHHHHHHHTS--GGGTTTCG
T ss_pred HHHHHHHH--hhhh-hHhHHHHHHHHHHHhcC--HHHHHhCc
Confidence 99998733 2333 57899999999999999 99987643
|
| >d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.31 E-value=8.3e-13 Score=119.98 Aligned_cols=92 Identities=8% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHH
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFVVGHSLSIVDI 155 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi 155 (758)
+|..++|.+++||++....+.+ +.+.+.|+.||++|++++|++|+++|+|||
T Consensus 6 ~~~~~~a~~~~~m~~e~~~f~p~~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~~~l~~le~~L~~~~yl~Gd~~TlADi 85 (126)
T d1gnwa1 6 KNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDL 85 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCccccCccccchH
Confidence 6889999999999887666542 567889999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
++++.+.++.... .....+.||||.+|+++|.++ |+|+++
T Consensus 86 ~~~~~l~~~~~~~-~~~~~~~~P~l~~W~~rl~~R--Ps~kkv 125 (126)
T d1gnwa1 86 HHIPAIQYLLGTP-TKKLFTERPRVNEWVAEITKR--PASEKV 125 (126)
T ss_dssp TTHHHHHHHTTSG-GGHHHHTSHHHHHHHHHHHSS--HHHHTT
T ss_pred HHHHHHHHHHHcC-cccccccCHHHHHHHHHHHcC--HHHHhh
Confidence 9999998863222 222357899999999999999 999875
|
| >d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Arc1p N-terminal domain-like domain: GU4 nucleic-binding protein 1, Arc1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=7.4e-14 Score=124.35 Aligned_cols=105 Identities=10% Similarity=0.198 Sum_probs=84.0
Q ss_pred CCcEEechHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCC-CCCHhHHHHHH
Q 043341 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGH-SLSIVDIAIWS 159 (758)
Q Consensus 81 ~g~~l~ES~aIl~yL~~~~~L~p~~~~era~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~-~lTlADi~l~~ 159 (758)
|+.+++||.+|.+|+ -+.++.+++++.+|..++.+ .+++..|+.||.+|++++|++|+ ++|+||+++|+
T Consensus 2 d~~~~fes~a~~~Y~------~~~t~~~~a~~~qw~~~~~~----~~~~~~L~~Ln~~L~~~~~l~g~~~~T~ADi~~f~ 71 (118)
T d2hrkb1 2 DLVTKFESLIISKYP------VSFTKEQSAQAAQWESVLKS----GQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFE 71 (118)
T ss_dssp HHHHHHHTSGGGGCC------CCCCHHHHHHHHHHHHHHHH----TCTGGGHHHHHHHHHHCSSTTSCSSCCHHHHHHHH
T ss_pred cHHHHhhcchhhhhh------hccCchHHHHHHHHHHHHHh----hHHHHHHHHHHHHHccCCeEeeCCcCCHHHHHHHH
Confidence 445689999999994 24578899999999998764 35677899999999999999996 79999999999
Q ss_pred HHhhhhccccc-----ccccccChhHHHHHHHHHhhccchHHH
Q 043341 160 ALAGTGQRWDS-----LRKSKKYQNLVRWFNSLSAEYSDSLDE 197 (758)
Q Consensus 160 ~L~~l~~~~~~-----~~~~~~~P~L~rW~~~i~~~~~p~~~~ 197 (758)
.+..+...+.. ......||||.||+++|+++ |++.+
T Consensus 72 ~l~~~~~~~~~~~k~~~~~l~~yphI~RW~~~I~~l--p~v~~ 112 (118)
T d2hrkb1 72 VALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNL--LEVSS 112 (118)
T ss_dssp HHHHHHHHHHHTCSSTTHHHHHSHHHHHHHHHHHHH--TTCCT
T ss_pred HHHHHHHhhhhhhhcccccccccHHHHHHHHHHHhc--ccCCc
Confidence 99876332211 12356899999999999999 76643
|
| >d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class theta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.3e-12 Score=122.59 Aligned_cols=97 Identities=15% Similarity=0.317 Sum_probs=78.6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHH-hcccCCcccCCCCC
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDK-YLERRTFVVGHSLS 151 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~-~L~~~~flvG~~lT 151 (758)
|||.|+.+|++|++|+.|..+.+.+ ..+...|..||+ +|++++||+|+++|
T Consensus 5 ~YP~D~~~RA~Vd~wl~w~~~~l~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~~~~l~~le~~~L~~~~yl~Gd~~S 84 (165)
T d1ljra1 5 WYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVT 84 (165)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHTTTTSSHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSSBTTBSSCC
T ss_pred CCCcCHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCcc
Confidence 7999999999999999997776552 456777888865 58999999999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccch---HHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDS---LDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~---~~~~l~~ 201 (758)
+|||++++.+.++.. .+.+..+.||||.+|+++|++. ++ ++++++.
T Consensus 85 lADi~~~~~l~~~~~--~~~~~~~~yP~l~aW~~r~~a~--~~~~~~~e~~~~ 133 (165)
T d1ljra1 85 LADLMALEELMQPVA--LGYELFEGRPRLAAWRGRVEAF--LGAELCQEAHSI 133 (165)
T ss_dssp HHHHHHHHHHHHHHH--TTCCTTTTCHHHHHHHHHHHHH--HCHHHHHHHHTH
T ss_pred HhHHHHHHHHHHHHH--hCCCCcccCHHHHHHHHHHHhh--hCcchHHHHHHH
Confidence 999999999998633 3333357899999999999987 54 5555554
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.30 E-value=9.2e-12 Score=137.48 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=67.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEE---ecCCCccc-------------------------chHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVR---FDDTNPAK-------------------------ESNE 299 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR---ieDtd~~r-------------------------~~~~ 299 (758)
+++=-||+|||.||||||++.++.+.+||- ..|.-++. +|+..... ...+
T Consensus 51 ~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (450)
T d1ffya3 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (450)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhh
Confidence 445557999999999999999999999983 33444444 44432111 0236
Q ss_pred HHHHHHHHHHHhCCCCC--Cccccc--CCHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIKYE--TVTYTS--DYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d--~~~~~S--~~~~~~~~~~~~Li~~G~aY 342 (758)
+++.+.+.++.||+..| ..+.+. ++....+.+..+|.++|++|
T Consensus 131 ~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy 177 (450)
T d1ffya3 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIY 177 (450)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCee
Confidence 67889999999999877 433333 46667888899999999999
|
| >d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]
Probab=99.30 E-value=1.5e-12 Score=118.62 Aligned_cols=84 Identities=13% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHh
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~ 162 (758)
.|+.+||.|+|||.|..+.+.+ +.+...|..||.+|++++||+|+++|+|||++++.+.
T Consensus 1 kD~k~RA~v~q~L~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~SiADi~l~~~~~ 80 (129)
T d1r5aa1 1 KDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQWSAANHFTIADIALCVTVS 80 (129)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTSSSSSSSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHccCCCcccCCCcHHHHHHHHHHH
Confidence 4788999999999987666542 6678899999999999999999999999999999999
Q ss_pred hhhcccccccccccChhHHHHHHHHHhh
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++.. .+.+ .+.||||.+|+++|+++
T Consensus 81 ~~~~--~~~~-~~~~p~l~~w~~r~~~~ 105 (129)
T d1r5aa1 81 QIEA--FQFD-LHPYPRVRAWLLKCKDE 105 (129)
T ss_dssp HHHH--TTCC-CTTCHHHHHHHHHHHHH
T ss_pred HHHH--cCCC-hhhChHHHHHHHHHHhc
Confidence 8633 3343 67899999999999987
|
| >d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]
Probab=99.29 E-value=2e-12 Score=116.67 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh--------------------HHHHHHH----HHHHHhcccCCcccCCCCCHhHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG--------------------SEFENAC----TYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L----~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|+|.++.+++++++|++.+...+.. +.+...+ ..|+.++++++|++|+++|+||++
T Consensus 1 L~Gkt~~e~a~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yl~Gd~~T~AD~~ 80 (127)
T d2gsqa1 1 LDGKTSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLH 80 (127)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCSSTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEeccCCchhHHH
Confidence 6899999999999999876543221 2333333 445566677899999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+.+.++.. ...+.++.||+|.+|+++|.++ |++++++++
T Consensus 81 l~~~l~~~~~--~~~~~~~~~P~l~~~~~~i~~~--P~vk~yl~~ 121 (127)
T d2gsqa1 81 CYVALEVPLK--HTPELLKDCPKIVALRKRVAEC--PKIAAYLKK 121 (127)
T ss_dssp HHHHHHHHHH--HCTTTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHH--hCccccccCcHHHHHHHHHHhC--HHHHHHHHH
Confidence 9999999733 3333467899999999999999 999999875
|
| >d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class tau GST species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
Probab=99.28 E-value=2.2e-12 Score=118.18 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh----------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG----------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~----------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~ 158 (758)
|+|.||.+||+++.|++|+++.+.+ ..+...+..|+..|.+++|++|+++|+|||+++
T Consensus 1 LlP~Dp~~RA~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~Gd~~slaDi~l~ 80 (138)
T d1gwca1 1 LLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALG 80 (138)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCBTTBTSCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccCCCcchhhHHH
Confidence 7899999999999999998876652 456777788888999999999999999999999
Q ss_pred HHHhhhhcc--ccc--ccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 159 SALAGTGQR--WDS--LRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 159 ~~L~~l~~~--~~~--~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+.+.++... ..+ ....+.||+|.+|+++|.++ |+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~r--Pav~~~~ 123 (138)
T d1gwca1 81 GVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIEL--DAAKAAL 123 (138)
T ss_dssp TTHHHHHHHHHHHSCCTTCTTTCHHHHHHHHHHHHS--HHHHHHS
T ss_pred HHHHHHHHHHHHcCcchhhHhhHHHHHHHHHHHHcC--HHHHHHC
Confidence 999886221 111 22356799999999999999 9999875
|
| >d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class theta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.8e-12 Score=106.44 Aligned_cols=60 Identities=25% Similarity=0.231 Sum_probs=55.5
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|+|| +.+.|+++++|+++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++
T Consensus 1 M~m~LY--~~~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d-~~~~l~ES~aI~~yL~~~ 77 (79)
T d1ljra2 1 MGLELF--LDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKD-GDFILTESSAILIYLSCK 77 (79)
T ss_dssp CCCEEE--ECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEE-TTEEEECHHHHHHHHHHH
T ss_pred CeEEEe--eCCCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEEe-CCcEEEcHHHHHHHHHHH
Confidence 789999 999999999999999999999998653 99999996 899999999999999998
Q ss_pred C
Q 043341 99 G 99 (758)
Q Consensus 99 ~ 99 (758)
|
T Consensus 78 y 78 (79)
T d1ljra2 78 Y 78 (79)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.25 E-value=3.7e-12 Score=117.80 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC---------------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS---------------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAI 157 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~---------------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l 157 (758)
|||.++.+++++++|++....... .+.+...+..||..|+. ++|++|+++|+||+++
T Consensus 1 Lyg~~~~E~A~vd~~~d~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~~Gd~~T~ADi~l 80 (142)
T d1k3ya1 1 LYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHL 80 (142)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcCcHhHHHH
Confidence 799999999999999986443211 14567779999999984 6899999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+.+.++.. .+....+.||+|.+|+++|.++ |++++++++-
T Consensus 81 ~~~l~~~~~--~~~~~~~~yP~L~~~~~rv~~~--P~vk~~l~~~ 121 (142)
T d1k3ya1 81 VELLYYVEE--LDSSLISSFPLLKALKTRISNL--PTVKKFLQPG 121 (142)
T ss_dssp HHHHHHHHH--HCTTTTTTCHHHHHHHHHHHHS--HHHHHHHSTT
T ss_pred HHHHHHHHH--cCCcccccCccHHHHHHHHHhC--HHHHHHHccc
Confidence 999998632 2333467899999999999999 9999998753
|
| >d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.4e-12 Score=114.77 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~ 159 (758)
|||.++.+++++++|++........ ..+...+..++..|.++.||+|+++|+||+++++
T Consensus 1 Lygk~~~e~a~iD~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Gd~~T~AD~~~~~ 80 (132)
T d2a2ra1 1 LYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLD 80 (132)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCSSTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeeeceeehhHHHHHH
Confidence 7999999999999999876543221 3445566778888889999999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.++.. .+....+.||+|.+|+++|.++ |.+++++++
T Consensus 81 ~l~~~~~--~~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~s 118 (132)
T d2a2ra1 81 LLLIHEV--LAPGCLDAFPLLSAYVGRLSAR--PKLKAFLAS 118 (132)
T ss_dssp HHHHHHH--HSTTGGGGCHHHHHHHHHHHTS--HHHHHHHHS
T ss_pred HHHHHHH--hCccccccChHHHHHHHHHHHC--HHHHHHHcC
Confidence 9998632 2333468899999999999999 999999885
|
| >d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class omega GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7e-12 Score=115.42 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHh
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~ 162 (758)
+|+||.+||+++.|++++...+.. +.+...+..+|..|+. ++|++|+++|+|||++++.+.
T Consensus 1 LP~DP~~rA~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~f~~G~~~slADi~~~p~~~ 80 (139)
T d1eema1 1 LPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFE 80 (139)
T ss_dssp SCSSHHHHHHHHHHHHHHTTHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSBTTBSSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhHHhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeCCccHHHHHHHHHHH
Confidence 589999999999999988754331 5678889999999974 579999999999999999998
Q ss_pred hhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
++... ......+.||+|.+|+++|.++ |+|++++.
T Consensus 81 ~~~~~-~~~~~~~~~P~l~~w~~r~~~r--P~vk~~~~ 115 (139)
T d1eema1 81 RLEAM-KLNECVDHTPKLKLWMAAMKED--PTVSALLT 115 (139)
T ss_dssp HHTTT-TCGGGSSSCHHHHHHHHHHHTC--HHHHHHCC
T ss_pred HHHHh-ccccccccChHHHHHHHHHHcC--cHHHHHCC
Confidence 76322 2222357899999999999999 99998853
|
| >d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]
Probab=99.23 E-value=5.3e-12 Score=116.93 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=80.2
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCh---------------------HHHHHHHHHHHHhccc--CCcccCCCCCHhHHH
Q 043341 100 NFYGQNAYEAGEIDEWLDYTPVFSSG---------------------SEFENACTYVDKYLER--RTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ~L~p~~~~era~v~~wl~~~~~~l~~---------------------~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~ 156 (758)
.|||.++.+|+++++|++........ +.+...++.||..|+. ++|++|+++|+||++
T Consensus 1 nLyg~~~~E~a~vD~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~AD~~ 80 (143)
T d1b48a1 1 NLYGKDLKERVRIDMYADGTQDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQ 80 (143)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSSSSSSSSCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCccHHHHH
Confidence 48999999999999999865433220 4556778999999985 479999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+.+.++.. .....+.+||+|.+|+++|.++ |++++++++
T Consensus 81 l~~~l~~~~~--~~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~~ 121 (143)
T d1b48a1 81 LLEAILMVEE--LSAPVLSDFPLLQAFKTRISNI--PTIKKFLQP 121 (143)
T ss_dssp HHHHHHHHHT--TCTTGGGGCHHHHHHHHHHHTS--HHHHHHHST
T ss_pred HHHHHHHHHH--hCcchhhhCHHHHHHHHHHHhC--HHHHHHHcC
Confidence 9999998633 2233467999999999999999 999999864
|
| >d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=7e-12 Score=113.61 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC----------------------hHHHHHHHHHHHHhcccC-CcccCCCCCHhHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS----------------------GSEFENACTYVDKYLERR-TFVVGHSLSIVDIAI 157 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~----------------------~~~l~~~L~~Le~~L~~~-~flvG~~lTlADi~l 157 (758)
|+|.++.+++++++|++.+...+. .+.+...|..||.+|+.+ +|++|+++|+||+++
T Consensus 1 L~g~~~~e~a~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~fl~G~~~T~aD~~l 80 (127)
T d1m0ua1 1 LCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYF 80 (127)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSBTTBCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcccHHHHHH
Confidence 789999999999999985543211 145566799999999754 699999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+.+.++... ......+.||+|.+|+++|.++ |.+++++++
T Consensus 81 ~~~l~~~~~~-~~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~~ 121 (127)
T d1m0ua1 81 AGITDYMNYM-VKRDLLEPYPALRGVVDAVNAL--EPIKAWIEK 121 (127)
T ss_dssp HHHHHHHHHH-HTSCTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHH-cCcchhhcChHHHHHHHHHHcC--HHHHHHHHH
Confidence 9999976322 2233467899999999999999 999999875
|
| >d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=8.4e-12 Score=114.28 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~ 162 (758)
|+|.++.|+++++++++.+..... .+.+...|+.||++|++++||+|+++|+||+++|..+.
T Consensus 1 L~Gkt~~E~~~vd~l~~~~~D~~~~~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~aD~~l~~~l~ 80 (133)
T d2gsta1 1 LCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILD 80 (133)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHTHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCccchhHHHHHHHHH
Confidence 689999999999999876654322 16678889999999999999999999999999999999
Q ss_pred hhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++... .....+.||+|.+|+++|.++ |++++.+++
T Consensus 81 ~~~~~--~~~~~~~~P~L~~~~~~i~~~--P~ik~yl~s 115 (133)
T d2gsta1 81 QYHIF--EPKCLDAFPNLKDFLARFEGL--KKISAYMKS 115 (133)
T ss_dssp HHHHH--STTTTTTCHHHHHHHHHHHTS--HHHHHHHTS
T ss_pred HHHHh--CcchhhhCHHHHHHHHHHHcC--HHHHHHHhC
Confidence 87332 233467899999999999999 999999874
|
| >d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]
Probab=99.20 E-value=1e-11 Score=104.01 Aligned_cols=62 Identities=24% Similarity=0.300 Sum_probs=56.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 1 m~LY--~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~-~g~~l~eS~aI~~YL~~~~~~ 77 (83)
T d1v2aa2 1 MDYY--YSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVD-NGHVVWESYAIVLYLVETYAK 77 (83)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHHCS
T ss_pred CEEE--CCCCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEEE-ccceeEcHHHHHHHHHHHhCC
Confidence 6899 999999999999999999999998754 99999986 8999999999999999987
Q ss_pred --CCCC
Q 043341 100 --NFYG 103 (758)
Q Consensus 100 --~L~p 103 (758)
.|+|
T Consensus 78 ~~~L~P 83 (83)
T d1v2aa2 78 DDTLYP 83 (83)
T ss_dssp SSTTSC
T ss_pred CCCCCC
Confidence 4665
|
| >d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.5e-11 Score=112.58 Aligned_cols=97 Identities=10% Similarity=0.154 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~ 162 (758)
|+|.++.|+++++++++-+..... .+.+...|..||++|++++||+|+++|+||+++|+.+.
T Consensus 1 L~G~t~~E~a~vD~~~~~v~D~~~~~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~ 80 (133)
T d2c4ja1 1 LCGESEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLE 80 (133)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccHHHHHHHHHHH
Confidence 689999999999999764333211 15677889999999999999999999999999999999
Q ss_pred hhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++... .....+.||+|.+|+++|.++ |.+++.+++
T Consensus 81 ~~~~~--~~~~l~~~P~L~~~~~rv~~~--P~ik~yl~s 115 (133)
T d2c4ja1 81 RNQVF--EPSCLDAFPNLKDFISRFEGL--EKISAYMKS 115 (133)
T ss_dssp HHHHH--STTTTTTCHHHHHHHHHHHHS--HHHHHHHHS
T ss_pred HHHHh--CchhhhhCchHHHHHHHHHhC--HHHHHHHhC
Confidence 87332 233468899999999999999 999999976
|
| >d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.18 E-value=1.1e-11 Score=114.36 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC---------------------hHHHHHHHHHHHHhcc--cCCcccCCCCCHhHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS---------------------GSEFENACTYVDKYLE--RRTFVVGHSLSIVDIAI 157 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~---------------------~~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~l 157 (758)
|||.|+.|++++++|++.....+. .+.+...+..++..|+ +++|++|+++|+||+++
T Consensus 1 LyGkd~~E~a~vD~~~d~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~L~~~~~~fl~Gd~~T~AD~~l 80 (140)
T d1gula1 1 LFGKNLKERTLIDMYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVIL 80 (140)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCSSSSTTSCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeeCCCCCHHHHHH
Confidence 789999999999999874432211 1445667888999987 46899999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+.+.++... ....++.||+|.+|+++|.++ |++++++++
T Consensus 81 ~~~l~~~~~~--~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~~ 120 (140)
T d1gula1 81 LQTILALEEK--IPNILSAFPFLQEYTVKLSNI--PTIKRFLEP 120 (140)
T ss_dssp HHHHHHHHHH--CTTTTTTCHHHHHHHHHHTTS--HHHHHHHST
T ss_pred HHHHHHHHHh--CcchhhHhHHHHHHHHHHHhC--HHHHHHHcC
Confidence 9999986332 223467899999999999999 999999864
|
| >d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]
Probab=99.18 E-value=1.2e-11 Score=103.66 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=53.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++
T Consensus 1 mkLY--~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d-~~~~l~ES~aI~~yL~~~~ 76 (84)
T d1jlva2 1 MDFY--YLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVD-NGFALWESRAICTYLAEKY 76 (84)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHH
T ss_pred CEEE--cCCCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEEE-CCEEEEcHHHHHHHHHHHc
Confidence 6899 999999999999999999999998653 99999986 8999999999999999987
|
| >d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Maize (Zea mays), type I [TaxId: 4577]
Probab=99.17 E-value=2.3e-11 Score=101.01 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=54.1
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
+|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++|
T Consensus 2 p~~Ly--~~~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~-~~~~l~ES~aI~~YL~~~~ 78 (80)
T d1axda2 2 PMKLY--GAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQD-GDLYLFESRAICKYAARKN 78 (80)
T ss_dssp CEEEE--SCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEE-TTEEEESHHHHHHHHHHHH
T ss_pred CEEEE--ECCCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEEE-CCEEEECHHHHHHHHHHhc
Confidence 37999 999999999999999999999998653 99999996 8899999999999999875
|
| >d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.16 E-value=1.9e-11 Score=111.84 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA 162 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~ 162 (758)
|+|.++.|+++++++...+..... .+.+...|..||.+|++++||+|+++|+||+++|+++.
T Consensus 1 L~Gkt~~E~~~vd~i~~~~~Dl~~~~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~AD~~~~~~l~ 80 (133)
T d1gsua1 1 MCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLD 80 (133)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCCcchhHHHHHHHHH
Confidence 679999999999998875543322 15677789999999999999999999999999999999
Q ss_pred hhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 163 GTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 163 ~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++... ....++.||+|.+|+++|.++ |.+++.+++
T Consensus 81 ~~~~~--~~~~l~~~P~L~~~~~~v~~~--P~Ik~yl~s 115 (133)
T d1gsua1 81 QQRMF--VPDCPELQGNLSQFLQRFEAL--EKISAYMRS 115 (133)
T ss_dssp HHHHH--STTCGGGSSHHHHHHHHHHTS--HHHHHHHTS
T ss_pred HHHHh--CcchhhhCchHHHHHHHHHhC--HHHHHHHcC
Confidence 86332 233467899999999999999 999999875
|
| >d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Maize (Zea mays), type III [TaxId: 4577]
Probab=99.16 E-value=2.4e-11 Score=101.14 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=53.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.|+++++|+++|+++|++|+...+ |+||+|++ ||.+|+||.||++||+++|
T Consensus 3 m~Ly--~~~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~eS~aI~~YL~~~y 78 (81)
T d1aw9a2 3 LKLY--GMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVD-GDEVLFESRAINRYIASKY 78 (81)
T ss_dssp EEEE--SCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEE-TTEEEESHHHHHHHHHHHT
T ss_pred EEEE--eCCCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEE-CCcEEECHHHHHHHHHHHC
Confidence 7999 999999999999999999999998643 99999997 8999999999999999986
|
| >d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class omega GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3.3e-11 Score=104.05 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=55.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++|+++|+++|++|+.+.+ |+||+|+++||.+|+||.+|++||++.|
T Consensus 20 ~~Ly--~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL~e~~ 93 (98)
T d1eema2 20 IRIY--SMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAY 93 (98)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCEEEEEBCTTSCCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHHHHHS
T ss_pred EEEE--cCCCChHHHHHHHHHHHhCCCCEEEEecccCCcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHHHHHC
Confidence 7999 999999999999999999999998654 9999999988999999999999999986
|
| >d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]
Probab=99.15 E-value=2.7e-11 Score=101.80 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=56.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|.|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++|
T Consensus 2 ~iLY--~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~ES~aI~~YL~~~~~ 78 (85)
T d1r5aa2 2 TVLY--YLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDD-HGLVLWESRVILSYLVSAYG 78 (85)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEE-TTEEEECHHHHHHHHHHHHC
T ss_pred EEEE--cCCCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEE-cccceecHHHHHHHHHHHhC
Confidence 6899 899999999999999999999998653 99999996 9999999999999999987
Q ss_pred ---CCCC
Q 043341 100 ---NFYG 103 (758)
Q Consensus 100 ---~L~p 103 (758)
.|+|
T Consensus 79 ~~~~L~P 85 (85)
T d1r5aa2 79 KDENLYP 85 (85)
T ss_dssp CSSCSSC
T ss_pred CCCCCCC
Confidence 4665
|
| >d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Probab=99.13 E-value=4.7e-11 Score=98.31 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=56.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+.+|+ |++.++++.++|++|+++|++|+.+.. |++|+|++ ||.+|+||.||++||+++++|
T Consensus 1 M~~kL~--Yf~~~g~~e~iRl~L~~~gi~~e~~~~~~~~~~~~~~~~p~g~lPvL~~-~~~~l~qS~AI~~YLa~k~gL 76 (77)
T d1tu7a2 1 MSYKLT--YFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDFSSIKSQFQFGQLPCLYD-GDQQIVQSGAILRHLARKYNL 76 (77)
T ss_dssp CCEEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECGGGSTTTGGGSTTSCSCEEEE-TTEEEESHHHHHHHHHHHTTC
T ss_pred CceEEE--ecCCcHHHHHHHHHHHHcCCCceeeecccccchhhcccCCCCCCCEEEE-CCEEEEcHHHHHHHHHHHhCc
Confidence 778998 899999999999999999999997643 99999998 899999999999999998743
|
| >d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Heligmosomoides polygyrus [TaxId: 6339]
Probab=99.13 E-value=4e-11 Score=108.51 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHhccccCC-------------------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS-------------------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDI 155 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~-------------------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi 155 (758)
|.++.+++++++|++.+...+. ...+...|..||..|+. ++|++|+++|+||+
T Consensus 2 Gktp~e~a~vd~~~d~~~D~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~~~~~G~~~T~aD~ 81 (129)
T d1tw9a1 2 GATPFESALIDSLADAYTDYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDL 81 (129)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSSSTTSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCcchHHHH
Confidence 7899999999999886643211 03456678999999975 47999999999999
Q ss_pred HHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 156 AIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 156 ~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++|+.+.++... ....++.||+|.+|+++|.++ |.+++.+++
T Consensus 82 ~~~~~l~~~~~~--~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~~ 123 (129)
T d1tw9a1 82 LVAEHVADMTNR--VPEYIEGFPEVKAHMERIQQT--PRIKKWIET 123 (129)
T ss_dssp HHHHHHHHHHHH--CGGGGTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccccChHHHHHHHHHHcC--HHHHHHHHH
Confidence 999999986332 223467899999999999999 999999875
|
| >d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Glutaredoxin 2 species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.2e-11 Score=98.03 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=54.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..||+|++|+++|.++|++|+...+ |+||+|+++||.+|+||.+|++||++.+
T Consensus 1 mkLY--~~~~cP~~~rvr~~l~~kgi~~e~~~~~~~~~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd~~~ 73 (75)
T d1g7oa2 1 MKLY--IYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVDKLD 73 (75)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTHHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHHHHT
T ss_pred CEEE--ccCCCCchHHHHHHHHHhCCCcccccccccchHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHHHHhh
Confidence 6899 899999999999999999999998654 9999999989999999999999999864
|
| >d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=5.1e-11 Score=99.82 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||+++|
T Consensus 2 ~kLY--~~~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~ES~aI~~YL~~~~ 77 (84)
T d1gnwa2 2 IKVF--GHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFED-GDLKLFESRAITQYIAHRY 77 (84)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEE-TTEEEECHHHHHHHHHHHT
T ss_pred eEEE--eCCCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEEE-CCcEEecHHHHHHHHHHHC
Confidence 6899 999999999999999999999998543 99999997 8999999999999999987
|
| >d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Sphingomonas paucimobilis [TaxId: 13689]
Probab=99.11 E-value=4.5e-11 Score=99.23 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=50.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +. +++++++++++++++|++|+.+.+ |+||+|+++||.+|+||.||++||+++|
T Consensus 1 mkLY--~~-p~s~s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~~~~ 77 (80)
T d1f2ea2 1 MKLF--IS-PGACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQN 77 (80)
T ss_dssp CEEE--EC-TTSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHTC
T ss_pred CEEe--cC-CCchHHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHHHHHC
Confidence 6888 54 566899999999999999987543 9999999888999999999999999975
|
| >d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class zeta GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=7e-11 Score=98.03 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=53.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++|
T Consensus 2 m~Ly--~~~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~-~~~~l~eS~aI~~yL~~~~ 77 (80)
T d1e6ba2 2 LKLY--SYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVD-GDVVINDSFAIIMYLDEKY 77 (80)
T ss_dssp CEEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEE-TTEEEESHHHHHHHHHHHS
T ss_pred EEEE--eCCCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEEE-CCEEEECHHHHHHHHHHhC
Confidence 6899 999999999999999999999998653 99999997 8999999999999999986
|
| >d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Proteus mirabilis [TaxId: 584]
Probab=99.09 E-value=6.1e-11 Score=98.41 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +.+ ++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||+++|
T Consensus 1 mkLY--~~p-~s~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL~~~~ 77 (80)
T d1pmta2 1 MKLY--YTP-GSCSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLK 77 (80)
T ss_dssp CEEE--ECT-TSTTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHTTC
T ss_pred CEEE--eCC-CChHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHHHHHC
Confidence 5788 554 56899999999999999997543 9999999888999999999999999865
|
| >d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=7e-11 Score=98.04 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +. +++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||+++|
T Consensus 1 MkLY--~~-p~s~s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL~~~~ 77 (80)
T d1n2aa2 1 MKLF--YK-PGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSV 77 (80)
T ss_dssp CEEE--EC-TTSTTHHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHTC
T ss_pred CEEE--eC-CCccHHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHHHHhC
Confidence 6888 55 466799999999999999987532 9999999988999999999999999975
|
| >d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Schistosoma japonicum [TaxId: 6182]
Probab=99.06 E-value=1.1e-10 Score=107.62 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
+|.++.|+++++++...+..... .+.+...|+.||..|++++||+|+++|+||+++|..+.+
T Consensus 1 lG~t~~E~a~id~i~~~v~Dl~~~~~~~~~~p~~e~~k~~~~~~l~~~l~~le~~L~~~~fl~G~~lT~AD~~~~~~l~~ 80 (140)
T d1duga1 1 LGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDV 80 (140)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCccHHHHHHHHHHHH
Confidence 47788888888887654433211 156788899999999999999999999999999999998
Q ss_pred hhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 164 TGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 164 l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.. .....++.||+|.+|+++|.++ |.+++.+++
T Consensus 81 ~~~--~~~~~l~~~P~L~~~~~ri~~~--P~Ik~yl~S 114 (140)
T d1duga1 81 VLY--MDPMCLDAFPKLVCFKKRIEAI--PQIDKYLKS 114 (140)
T ss_dssp HHH--HCTTTTTTCHHHHHHHHHHHHS--HHHHHHHTS
T ss_pred HHH--hCccchhhChHHHHHHHHHHhC--HHHHHHHcC
Confidence 632 2334467899999999999999 999999875
|
| >d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Fasciola hepatica [TaxId: 6192]
Probab=99.04 E-value=1.4e-10 Score=106.44 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
+|.++.|+++++++.+.+..... .+.+...|..||..|++++||+|+++|+||+++|..+.+
T Consensus 1 ~G~t~~E~~~vD~i~~~~~Dl~~~~~~~~~~~~~e~~K~~~~~~l~~~l~~le~~L~~~~~lvG~~lT~AD~~~f~~l~~ 80 (136)
T d2fhea1 1 IGTTSEERARVSMIEGAAVDLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDA 80 (136)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCcccchHHHHHHHHHH
Confidence 47888899999988775553211 156778899999999999999999999999999999998
Q ss_pred hhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 164 TGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 164 l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+... ....++.||+|.+|+++|.++ |.+++.+.+
T Consensus 81 ~~~~--~~~~l~~yP~L~~~~~~v~~~--P~Ik~yl~S 114 (136)
T d2fhea1 81 IRYL--EPHCLDHFPNLQQFMSRIEAL--PSIKAYMES 114 (136)
T ss_dssp HHHH--CTTTTTTCHHHHHHHHHHHTS--HHHHHHHTS
T ss_pred HHHH--CCCcchhchhHHHHHHHHHhC--HHHHHHHcC
Confidence 6332 333468999999999999999 999999875
|
| >d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Pf GST species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.03 E-value=1.9e-10 Score=103.86 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhccccCC----------------hHHHHHHHHHHHHhcc--------cCCcccCCCCCHhHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS----------------GSEFENACTYVDKYLE--------RRTFVVGHSLSIVDIAIW 158 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~----------------~~~l~~~L~~Le~~L~--------~~~flvG~~lTlADi~l~ 158 (758)
|.++.+++++++|++....... .+.+...+..||+.|. +++||+|+++|+||+++|
T Consensus 2 G~t~~E~a~iD~i~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~~~~flvG~~~T~AD~~~~ 81 (126)
T d1okta1 2 GESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVF 81 (126)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHTHHHHHHHHHHHHHHHTCSSCCTTCCCSSTTSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHHHHHHHHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHccccccCCCCeeecCCccHHHHHHH
Confidence 6789999999999875442211 1456777888888774 468999999999999999
Q ss_pred HHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 159 ~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
..+.++... ....+..||+|.+|+++|.++ |.+++.+++
T Consensus 82 ~~l~~~~~~--~~~~~~~~P~L~~~~~rv~~~--P~ik~yl~~ 120 (126)
T d1okta1 82 NLYDDIETK--YPSSLKNFPLLKAHNEFISNL--PNIKNYITN 120 (126)
T ss_dssp HHHHHHHTT--SCCTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHh--CccccccChHHHHHHHHHHcC--HHHHHHHHh
Confidence 999986332 333467899999999999999 999999875
|
| >d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class tau GST species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.02 E-value=2.1e-10 Score=95.96 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=53.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++||++|.++|++|+...+ |+||+|++ ||.+|+||.+|++||+++|
T Consensus 6 l~Ly--~~~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~-~g~~l~eS~~I~~YL~e~~ 79 (84)
T d1oyja2 6 LVLL--DFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLH-AGRPVSESLVILQYLDDAF 79 (84)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEEE-TTEEEESHHHHHHHHHHHC
T ss_pred eEEE--cCCCChHHHHHHHHHHHcCCCcEEEEEccCcCCHHHHhhCCCcCcccEEEE-CCceEEcHHHHHHHHHHHC
Confidence 7999 889999999999999999999998654 79999986 9999999999999999986
|
| >d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Yeast prion protein ure2p, nitrogen regulation fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.9e-10 Score=98.00 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=54.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEe--CCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSF--SNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~--~~g~~l~ES~aIl~yL~~~ 98 (758)
++|| ++..|+++++|+++|+++|++|+.+.+ |+||+|++ +||.+|+||.||++||+++
T Consensus 6 ~tLY--~~~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~YL~~~ 83 (92)
T d1k0da2 6 YTLF--SHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLVNK 83 (92)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHHHH
T ss_pred eEEe--eCCCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHHHHHHH
Confidence 7999 999999999999999999999998654 99999996 4899999999999999998
Q ss_pred C
Q 043341 99 G 99 (758)
Q Consensus 99 ~ 99 (758)
|
T Consensus 84 y 84 (92)
T d1k0da2 84 Y 84 (92)
T ss_dssp H
T ss_pred h
Confidence 7
|
| >d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.1e-10 Score=93.58 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=52.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
++|| |++.++++.++|++|+++|++|+.+.. |++|+|++ ||..|+||.||++||+++
T Consensus 3 ~kL~--yf~~~~~~~~vRl~L~~~gi~~e~~~~~~~~~~~~~~~~p~g~vP~L~~-~g~~l~qS~AI~~yLar~ 73 (74)
T d2cvda2 3 YKLT--YFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEV-DGLTLHQSLAIARYLTKN 73 (74)
T ss_dssp EEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEEE-TTEEEECHHHHHHHHHTT
T ss_pred EEEE--EcCCcHHHHHHHHHHHHcCCCCEecccccccchhhcccCCCCCcCEEEE-CCEEEEcHHHHHHHHccc
Confidence 6898 999999999999999999999988654 99999987 999999999999999985
|
| >d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.2e-10 Score=93.20 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=53.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| |++.++++.++|++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||++++
T Consensus 3 ~~L~--yf~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~-~g~~i~eS~aI~~yLa~~~ 76 (77)
T d2a2ra2 3 YTVV--YFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQD-GDLTLYQSNTILRHLGRTL 76 (77)
T ss_dssp EEEE--ECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEE-TTEEEECHHHHHHHHHHHT
T ss_pred EEEE--EcCCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEEE-CCEeeecHHHHHHHHHHhc
Confidence 6888 899999999999999999999998664 99999998 8999999999999999975
|
| >d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Hypothetical protein AGR pAT 752p/Atu5508 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.00 E-value=3.3e-10 Score=95.37 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=55.3
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCC-cEEechHHHHHHHH
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNG-SKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g-~~l~ES~aIl~yL~ 96 (758)
|+ ++|| |++.++++.++|++|+++|++|+...+ |++|+|++++| .+|+||.||++||+
T Consensus 5 M~~~~L~--Y~~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI~~YLa 82 (87)
T d2fnoa2 5 MNTFDLY--YWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLG 82 (87)
T ss_dssp CBSEEEE--CCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHHHH
T ss_pred CCCeEEE--ECCCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHHHHHHH
Confidence 55 8999 999999999999999999999998543 99999999766 68999999999999
Q ss_pred HhCC
Q 043341 97 RVGN 100 (758)
Q Consensus 97 ~~~~ 100 (758)
++++
T Consensus 83 ~k~~ 86 (87)
T d2fnoa2 83 ERLD 86 (87)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9864
|
| >d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class zeta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.1e-10 Score=94.73 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=51.9
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
.|| ++..|++|++||++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++.|
T Consensus 3 iLY--~~~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~i~eS~aI~~yL~~~~ 79 (83)
T d1fw1a2 3 ILY--SYFRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKI-DGITIHQSLAIIEYLEETR 79 (83)
T ss_dssp EEE--ECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEE-TTEEEESHHHHHHHHHHHS
T ss_pred EEE--cCCCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEE-CCEEEecHHHHHHHHHHhC
Confidence 578 899999999999999999999987532 99999997 8999999999999999976
|
| >d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]
Probab=98.99 E-value=3e-10 Score=93.62 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| |++.++++.++|++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++|
T Consensus 4 ~kL~--yf~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~-~g~~l~eS~AI~rYLa~ky 78 (78)
T d1b48a2 4 PKLY--YFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEI-DGMMLTQTRAILSYLAAKY 78 (78)
T ss_dssp CEEE--BCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEE-TTEEECCHHHHHHHHHHHT
T ss_pred cEEE--EcCCchHHHHHHHHHHHcCCCcEEEEEcchhhhcchhhcccccCCCCCEEEe-CCeEEECHHHHHHHHHhhC
Confidence 4888 899999999999999999999997543 89999997 8999999999999999875
|
| >d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=98.98 E-value=3.6e-10 Score=92.87 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=52.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| |++.++++.++|++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++|
T Consensus 2 pkL~--yf~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~-~g~~l~eS~AI~~yLa~k~ 76 (77)
T d1gula2 2 PKLH--YPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEI-DGMKLVQTRSILHYIADKH 76 (77)
T ss_dssp CEEE--EESSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEE-TTEEEESHHHHHHHHHHHT
T ss_pred CEEE--EcCCcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEE-CCEeeecHHHHHHHHHHHc
Confidence 3788 889999999999999999999997543 99999997 8999999999999999986
|
| >d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]
Probab=98.98 E-value=3.8e-10 Score=92.23 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=53.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| |++.++++..+|++|+++|++|+.+.. |++|+|++ ||.+|+||.||++||++++
T Consensus 3 ~~L~--yf~~~g~~~~iRl~L~~~gi~ye~~~~~~~~~~~~~~~~p~g~lPvL~~-~g~~i~eS~aI~~yL~~k~ 74 (75)
T d2gsqa2 3 YTLH--YFPLMGRAELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLDI-DGTKMSQSMCIARHLAREF 74 (75)
T ss_dssp EEEE--ECSSSGGGHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSGGGSSCEEEE-TTEEECCHHHHHHHHHHHT
T ss_pred EEEE--ecCCchhHHHHHHHHHHcCCCchhhccccccchhhhhccccCCcCEEEE-CCeeeecHHHHHHHHHHHc
Confidence 6898 999999999999999999999998654 99999998 8899999999999999875
|
| >d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=3.4e-10 Score=92.69 Aligned_cols=60 Identities=8% Similarity=0.166 Sum_probs=54.7
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++++|+ |++.++++..+|++|+++|++|+.... |++|+|++ ||.+|+||.||++||++++
T Consensus 2 ~s~kL~--Yf~~~g~~e~iRl~L~~~gi~yed~~~~~~~~~~~~~~~p~g~lP~l~~-~g~~l~qS~aI~~YLa~k~ 75 (76)
T d1m0ua2 2 HSYTLF--YFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLEV-DGKRVHQSISMARFLAKTV 75 (76)
T ss_dssp CCEEEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHGGGSGGGCSCEEEE-TTEEEECHHHHHHHHHHHH
T ss_pred ccEEEE--ecCCchHHHHHHHHHHHcCCCCEEecCChhhhhhhhccCcCCCCcEEEE-CCcccccHHHHHHHHHHhc
Confidence 468999 999999999999999999999998653 99999998 8999999999999999864
|
| >d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class tau GST species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
Probab=98.95 E-value=6.6e-10 Score=92.63 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=52.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++||++|.++|++|+.+.+ +++|++.. ||.+|+||.+|++||+++|
T Consensus 4 mkLy--~~~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~~~~~~~~~~~~~~p~l~~-dg~~i~eS~~I~~YL~e~~ 77 (83)
T d1gwca2 4 LKLL--GAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVLIH-NGAPVCESMIILQYIDEVF 77 (83)
T ss_dssp EEEE--ECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEEE-TTEEEESHHHHHHHHHHHT
T ss_pred EEEE--ecCCChHHHHHHHHHHHCCCCeEEEEEeccchhHHHHHHHhccCCCceeec-CCceEcCHHHHHHHHHHHc
Confidence 7999 999999999999999999999998654 56787765 8999999999999999987
|
| >d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Pf GST species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.95 E-value=6.7e-10 Score=93.06 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=53.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
++|| |++.++++.++|++++++|++|+.+.+ |++|+|++ ||.+|+||.||++||++
T Consensus 5 i~L~--Y~~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~-~g~~l~eS~AI~~yLa~ 81 (85)
T d1okta2 5 IVLY--YFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQI-GDLILAQSQAIVRYLSK 81 (85)
T ss_dssp EEEE--EESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEE-TTEEEECHHHHHHHHHH
T ss_pred eEEE--EcCCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeec-CCCEEecHHHHHHHHHH
Confidence 6887 898899999999999999999997532 89999997 99999999999999999
Q ss_pred hCC
Q 043341 98 VGN 100 (758)
Q Consensus 98 ~~~ 100 (758)
+++
T Consensus 82 k~g 84 (85)
T d1okta2 82 KYN 84 (85)
T ss_dssp HTT
T ss_pred HcC
Confidence 874
|
| >d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Heligmosomoides polygyrus [TaxId: 6339]
Probab=98.93 E-value=6.7e-10 Score=91.18 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=53.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
.+|+ |++.++++..+|++|+++|++|+.+.. |++|+|++ ||..|+||.||++||++++
T Consensus 4 ~kL~--Yf~~~gr~e~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~p~g~lPvL~~-~g~~i~qS~AI~~yLa~k~ 75 (77)
T d1tw9a2 4 YKLT--YFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEV-DGQQLAQSQAICRYLAKTF 75 (77)
T ss_dssp EEEE--EESSSGGGHHHHHHHHHTTCCCEEEEECHHHHGGGGGGSTTSCSCEEEE-TTEEEECHHHHHHHHHHHH
T ss_pred eEEE--ECCCchHHHHHHHHHHHcCCCceeeecccccchhhhhhcccCCCCEEEE-CCEEEEcHHHHHHHHHHHh
Confidence 7898 899999999999999999999998654 99999998 8999999999999999875
|
| >d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=98.93 E-value=6.9e-10 Score=91.62 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=52.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
.+|| |++.++++..+|++|+++|++|+.... |++|+|++ ||.+|+||.||++||+++|
T Consensus 4 ~kL~--Yf~~~grae~irl~L~~~gv~yed~~~~~~~~~~~~~~~~~~p~g~lPvl~~-~g~~l~qS~AI~~YLa~k~ 78 (79)
T d1k3ya2 4 PKLH--YFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEI-DGMKLVQTRAILNYIASKY 78 (79)
T ss_dssp CEEE--EESSSTTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEEE-TTEEEESHHHHHHHHHHHT
T ss_pred cEEE--EcCCcHHHHHHHHHHHHcCCCceEEEecchhhhhhhcccccCCCCCCCEEEE-CCeEEEcHHHHHHHHHHhc
Confidence 4788 899999999999999999999997543 99999987 8999999999999999986
|
| >d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-09 Score=91.34 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=52.7
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
||+|+ |++.++++.++|++|+++|++|+.... |++|+|++ +|.+|+||.||++
T Consensus 1 P~~L~--Y~~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~-~g~~l~eS~AIl~ 77 (84)
T d2c4ja2 1 PMTLG--YWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLID-GTHKITQSNAILR 77 (84)
T ss_dssp CEEEE--EESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEE-TTEEEESHHHHHH
T ss_pred CEEEE--ECCCchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEE-CCEEEecHHHHHH
Confidence 47888 888889999999999999999986432 88999997 8999999999999
Q ss_pred HHHHhC
Q 043341 94 YIGRVG 99 (758)
Q Consensus 94 yL~~~~ 99 (758)
||+++|
T Consensus 78 YLa~k~ 83 (84)
T d2c4ja2 78 YIARKH 83 (84)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999986
|
| >d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class tau GST species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.90 E-value=3.6e-10 Score=104.77 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccC---CCCCHhHHHHHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVG---HSLSIVDIAIWSA 160 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG---~~lTlADi~l~~~ 160 (758)
+.|.++.+||+++.|++|++..+.+ +.+...|..||..|+.++|++| +++|+||+++++.
T Consensus 8 ~~~~~~yeRA~~R~W~~~vd~~i~~~~~~~~~~~~e~~e~a~~~~~~~L~~lE~~l~~~~~~~g~~g~~~sl~Di~~~p~ 87 (145)
T d1oyja1 8 GDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPF 87 (145)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCSCCHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCcccHHHHHHhHH
Confidence 5678899999999999999876553 5678889999999999999887 5699999999999
Q ss_pred Hhhhhc--ccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 161 LAGTGQ--RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 161 L~~l~~--~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+.++.. ...+....+.+|+|.+|+++|.++ |+|++++
T Consensus 88 ~~~~~~~~~~~g~~~~~~~P~l~~W~~rl~~r--pavk~~l 126 (145)
T d1oyja1 88 TAWFYSYERCGGFSVEEVAPRLAAWARRCGRI--DSVVKHL 126 (145)
T ss_dssp GGGHHHHHHHHTCCHHHHCHHHHHHHHHHTTS--HHHHHHC
T ss_pred HHHHHHHHHhhcccccccCHHHHHHHHHHhCC--hHHHHHC
Confidence 887621 122344457899999999999999 9999875
|
| >d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]
Probab=98.88 E-value=1.6e-09 Score=97.26 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHhccccCC---------------------hHHHHHHHHHHHHhcccC--CcccCCCCCHhHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS---------------------GSEFENACTYVDKYLERR--TFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~---------------------~~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~l~~ 159 (758)
|.+..|+++++++++.+..... .+.+...|..||+.|+.+ +|++|+++|+||+++|.
T Consensus 2 G~~~~E~~~vD~i~~~~~Dl~~~~~~~~~~~~~~k~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~vG~~lT~aD~~~~~ 81 (123)
T d1oe8a1 2 GGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIA 81 (123)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHHHHHHHHHhhCCCCeeeCCCCcHHHHHHHH
Confidence 5666667777666554332211 145788899999999754 69999999999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHH-HhhccchHHHHHHh
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSL-SAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i-~~~~~p~~~~~l~~ 201 (758)
.+.++.....+. ....||+|.+|++++ .++ |.+++.+++
T Consensus 82 ~l~~~~~~~~~~-~~~~~P~L~~~~~~v~~~~--P~I~~yl~s 121 (123)
T d1oe8a1 82 VIDHVTDLDKEF-LTGKYPEIHKHRENLLASS--PRLAKYLSD 121 (123)
T ss_dssp HHHHHHHHCTTT-TTTSCHHHHHHHHHHHHHC--HHHHHHHHH
T ss_pred HHHHHHHhCccc-ccccCcHHHHHHHHHHHcC--hHHHHHHHc
Confidence 999874333322 246899999999997 789 999998864
|
| >d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Probab=98.88 E-value=1.3e-09 Score=99.04 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhccccCC------------------hHHHHHHHHHH----HHhcccCCcccCCCCCHhHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS------------------GSEFENACTYV----DKYLERRTFVVGHSLSIVDIAIWSA 160 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~------------------~~~l~~~L~~L----e~~L~~~~flvG~~lTlADi~l~~~ 160 (758)
|.++.|+++++++++.+..... .+.+...+..+ +..+++++|++|+++|+||+++|..
T Consensus 1 G~~~~E~a~vD~i~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~~lT~aD~~~~~~ 80 (131)
T d1tu7a1 1 GENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEE 80 (131)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHHHHHHHTTTGGGSSBTTBSSCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCCcchhHHHHHHH
Confidence 5678888888888765443211 03334444444 4445667999999999999999999
Q ss_pred HhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 161 LAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 161 L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.++... ....++.||+|.+|++++.++ |.+++++++
T Consensus 81 l~~~~~~--~~~~~~~~P~L~~~~~rv~~~--P~Ik~yl~s 117 (131)
T d1tu7a1 81 LDVHQIL--DPHCLDKFPLLKVFHQRMKDR--PKLKEYCEK 117 (131)
T ss_dssp HHHHHHH--CTTTTTTCHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHh--ChhhhhccHHHHHHHHHHHcC--HHHHHHHhC
Confidence 9987332 233467899999999999999 999999886
|
| >d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=1e-09 Score=89.42 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred ce-eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MT-MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~-m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+ ++|| +.+++++.+++++++++|++|+.... |+||+|++++|.+|+||.||++||++.
T Consensus 1 Ms~~tLY---~~~~~rs~~~~~~l~~~~~d~~~~~~~~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~YL~~l 73 (75)
T d1nhya2 1 MSQGTLY---ANFRIRTWVPRGLVKALKLDVKVVTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVKL 73 (75)
T ss_dssp CTTCEEE---CCSSHHHHHHHHHHHHHTCCCEEECGGGCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHHHH
T ss_pred CCCeEEe---cCCCchHHHHHHHHHhcCccccccCcccCCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHHHHHh
Confidence 44 6787 55678899999999999999998653 999999988899999999999999875
|
| >d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Microsomal prostaglandin E synthase-2 species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
Probab=98.81 E-value=2.1e-09 Score=95.07 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=55.2
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCC---CcEEechHHHHHHHHHhC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSN---GSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~---g~~l~ES~aIl~yL~~~~ 99 (758)
|.++|| ++..||+|++|+++|.++|++|+.+.+ ++||+|+.++ |..|+||.+|++||++.+
T Consensus 1 m~i~LY--~~~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~~~~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL~~~~ 77 (113)
T d1z9ha2 1 LQLTLY--QYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYL 77 (113)
T ss_dssp CEEEEE--ECTTCHHHHHHHHHHHHTTCCEEEEECCTTTCGGGTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHHHHH
T ss_pred CEEEEE--cCCCChHHHHHHHHHHHcCCeeEEeccCcccchhhccCccccccccccccCCCceEeecHHHHHHHHHHHC
Confidence 668999 999999999999999999999998765 9999998753 579999999999999987
|
| >d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Fasciola hepatica [TaxId: 6192]
Probab=98.80 E-value=3.2e-09 Score=87.71 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=53.0
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
||+|+ |++..+++..+|++|+++|++|+.... |++|++++ +|.+|+||.||++||+++
T Consensus 1 p~~L~--Y~~~rgrae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~-~g~~l~qS~AI~~yLa~k 77 (80)
T d1fhea2 1 PAKLG--YWKLRGLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYID-DKCKLTQSVAIMRYIADK 77 (80)
T ss_dssp CCEEE--EESSCTTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEEC-SSCEEESTTHHHHHHHHT
T ss_pred CeEEE--EcCCchHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeec-CCeEEeCHHHHHHHHHHH
Confidence 36887 888888999999999999999997532 89999986 889999999999999998
Q ss_pred CC
Q 043341 99 GN 100 (758)
Q Consensus 99 ~~ 100 (758)
++
T Consensus 78 ~g 79 (80)
T d1fhea2 78 HG 79 (80)
T ss_dssp TT
T ss_pred hC
Confidence 63
|
| >d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Schistosoma japonicum [TaxId: 6182]
Probab=98.73 E-value=8.1e-09 Score=85.23 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=51.9
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhCC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~ 100 (758)
+|+ |++..+++..+|++|+++|++|+...+ |++|+|++ ||..|+||.||++||+++++
T Consensus 3 ~L~--Y~~~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d-~g~~l~qS~AI~ryLa~k~~ 79 (80)
T d1duga2 3 ILG--YWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYID-GDVKLTQSMAIIRYIADKHN 79 (80)
T ss_dssp EEE--EESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEC-SSCEEESHHHHHHHHHHHTT
T ss_pred EEE--EcCCchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceecc-CCeeehhHHHHHHHHHHHcC
Confidence 677 888889999999999999999997532 89999986 89999999999999999874
|
| >d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Chloride intracellular channel 1 (clic1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.1e-08 Score=85.45 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 48 ADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
.||++++++++|+++|++|+.+.+ |++|+|++ ||.+|+||.+|++||++.+
T Consensus 18 ~cPf~~rv~~~L~~kgi~~~~~~v~~~~~~~~~~~~nP~~~vPvL~~-~~~~i~eS~~I~~YLee~~ 83 (86)
T d1k0ma2 18 NCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGELPFLLY-GTEVHTDTNKIEEFLEAVL 83 (86)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHCTTCCSSEEEE-TTEEEECHHHHHHHHHHHS
T ss_pred CCHhHHHHHHHHHHHCCCcEEEEeecccccHHHHHHhccCceeEEEE-cccccccHHHHHHHHHHHc
Confidence 577899999999999999998754 99999997 8999999999999999975
|
| >d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]
Probab=98.63 E-value=3.1e-08 Score=81.83 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=53.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeC----CCcEEechHHHHHHHHHhCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFS----NGSKLQGTYVLLRYIGRVGN 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~----~g~~l~ES~aIl~yL~~~~~ 100 (758)
++|+ |++.++++..+|++|+++|++|+.+.. +++|+++++ +|.+|+||.||++||+++++
T Consensus 3 ~kL~--Y~~~rgr~e~iR~lL~~~gv~ye~~~~~~~~~~~~k~~~~~~~lP~~~~p~l~~~~~~l~qS~AI~~YLa~k~~ 80 (81)
T d1oe8a2 3 IKVI--YFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHH 80 (81)
T ss_dssp EEEE--ESCTTSTTHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHHHHHHTT
T ss_pred EEEE--eCCCchHHHHHHHHHHHcCCCceeEeccchhhHHhhhcccccCCCcccCCccccCCEEEEcHHHHHHHHHHHhC
Confidence 6888 899999999999999999999998653 788998875 57799999999999999874
|
| >d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Chloride intracellular channel 1 (clic1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2e-07 Score=86.19 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=55.3
Q ss_pred HHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 131 ACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 131 ~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
.+..+|..|+.++||+|+++|+|||++++.|.++... ..+......+|+|.+|+++|.++ |+|++..
T Consensus 63 ~l~~~~~~l~~~~fl~Gd~~t~aDi~l~p~l~r~~~~~~~~~~~~~~~~~p~l~~w~~~l~~r--psf~~T~ 132 (149)
T d1k0ma1 63 ETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAR--EEFASTC 132 (149)
T ss_dssp CCHHHHHSCCCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTS--HHHHTTS
T ss_pred HHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHHHHhhhcccccchhhhcChHHHHHHHHHHCC--hHHHHhC
Confidence 4567888889999999999999999999999886322 22334457899999999999999 9998864
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=5.9e-07 Score=99.02 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=75.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++==||++||.||||||.+.++-+.+|| +..|.-++-+-.+| +.....++...|.+.++.|
T Consensus 36 ~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 115 (494)
T d1h3na3 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (494)
T ss_dssp EEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHHhc
Confidence 44555899999999999999999999998 46688888887666 2233457889999999999
Q ss_pred CCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+..| ..+++.+ +.+..+++..+|.++|++|
T Consensus 116 g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy 150 (494)
T d1h3na3 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150 (494)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcccCCCCceecCCccccchHHHHHHHhhhCCcEE
Confidence 99776 4555544 5678899999999999999
|
| >d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Microsomal prostaglandin E synthase-2 species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
Probab=98.08 E-value=1.7e-06 Score=79.88 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=48.8
Q ss_pred HHHHHHHHHH-HHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYV-DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~L-e~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
+.|...|..+ +..+.+++|+.|++||+||+++|+.+.++.. ......+..+|+|.+|+++|++.
T Consensus 93 ~~L~~~ld~f~~~~l~~~~F~gGd~P~lADlavfg~l~~~~~-~~~f~~l~~~p~i~~W~~RMk~a 157 (161)
T d1z9ha1 93 EDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEG-LDAFDDLMQHTHIQPWYLRVERA 157 (161)
T ss_dssp HHHHHHHHHHHHHHCSSCSBTTBTSCCHHHHHHHHHHHTTTT-SHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCcHHHHHHHhhhhhhhh-ccccchhccCCcHHHHHHHHHHH
Confidence 4455555544 4456788999999999999999999998733 22334467899999999999765
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0017 Score=68.24 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=48.0
Q ss_pred eeeccCCCCCCC-ccchhhHHHHHHHHHHcccCceEEEEecCC----Cc---ccchHHHHHHHHHHHHHhCCCCC--Ccc
Q 043341 250 VRLRFAPEPSGY-LHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NP---AKESNEFVDNLLKDIETLGIKYE--TVT 319 (758)
Q Consensus 250 v~~RfaP~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~---~r~~~~~~~~i~~dl~~LGi~~d--~~~ 319 (758)
|.|=|. |||. |||||.-.++....+-...+...++-|.|. +. ..+..++......++-.+|++++ .++
T Consensus 77 vytG~~--PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~ 154 (386)
T d1r6ta2 77 LYTGRG--PSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIF 154 (386)
T ss_dssp EEEEEC--CCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEE
T ss_pred EEeccC--CCCchhHHHHHHHHHHHHHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 444444 7895 899999999987666655566666666552 21 12334555566667778999998 455
Q ss_pred cccCCH
Q 043341 320 YTSDYF 325 (758)
Q Consensus 320 ~~S~~~ 325 (758)
++|+++
T Consensus 155 ~~s~~~ 160 (386)
T d1r6ta2 155 SDLDYM 160 (386)
T ss_dssp EHHHHG
T ss_pred eCcHHH
Confidence 666543
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.02 Score=58.76 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=91.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----Cccc-------chHHHHHHHHHHHHHhCCCCC-
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----NPAK-------ESNEFVDNLLKDIETLGIKYE- 316 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d~~r-------~~~~~~~~i~~dl~~LGi~~d- 316 (758)
|.+=|- |||.|||||.-.++....+-+ .|...+.=|.|. |+.- ....+.+.|...+..+|++++
T Consensus 35 vy~G~~--PTg~lHlG~~l~~~~l~~~q~-~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d~~k 111 (339)
T d1n3la_ 35 IYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEK 111 (339)
T ss_dssp EEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred EEEeeC--CCCccHHHHHHHHHHHHHHHH-CCCcEEEEecchhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 555555 689999999999887766655 577777777542 2211 112344556677889999998
Q ss_pred -CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 317 -TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 317 -~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
.++.+|+.... .++...|..-. ...+...+... +.. +.+.
T Consensus 112 ~~i~~~sd~~~~-~~~~~~~~~~~----~~~~~~~~~~~-----------------------~~~----------~~~~- 152 (339)
T d1n3la_ 112 LKFIKGTDYQLS-KEYTLDVYRLS----SVVTQHDSKKA-----------------------GAE----------VVKQ- 152 (339)
T ss_dssp EEEEEGGGTTTS-HHHHHHHHHHH----TTSCHHHHHHH-----------------------TTT----------TSCC-
T ss_pred heeeecChHhhh-hhHHHHHhhHH----HHHHHHHHHHH-----------------------HHH----------Hhcc-
Confidence 56788886421 12222222211 11111111110 000 0000
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeee
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF 475 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~ 475 (758)
. + +...|- -.||.- -+.|=...+.++++.|.|-..|...-.-+.+.+|..+|....+
T Consensus 153 ---~-----~----------~~~~g~--f~YP~l---QaaDil~~~ad~v~~G~DQ~~~i~l~rd~a~r~~~~~~~~l~~ 209 (339)
T d1n3la_ 153 ---V-----E----------HPLLSG--LLYPGL---QALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMN 209 (339)
T ss_dssp ---C-----S----------SCCHHH--HHHHHH---HHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred ---C-----C----------CCcccc--ccccHH---HHHHHHhccCCccccchhHHHHHHHHHHHHhhhccCcceeeee
Confidence 0 0 000000 023322 1222233568899999998877776666777889888866655
Q ss_pred eee-ecccccccchh
Q 043341 476 SRL-NMVYTLLSKRK 489 (758)
Q Consensus 476 ~~l-~~~~~klSKR~ 489 (758)
..+ .+.|.||||+.
T Consensus 210 pll~~l~g~kmsks~ 224 (339)
T d1n3la_ 210 PMVPGLTGSKMSSSE 224 (339)
T ss_dssp CCCCCSSCC------
T ss_pred ccccccccccccccc
Confidence 443 35688999986
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=94.45 E-value=0.04 Score=42.87 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=41.7
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEec
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~E 87 (758)
|..+|| +.+.+++|.+++..|...|++|+...+ .++|++.+ ||..|.+
T Consensus 1 M~v~iY--t~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i-~g~~igG 63 (74)
T d1r7ha_ 1 MSITLY--TKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEV-DGEHWSG 63 (74)
T ss_dssp CCEEEE--ECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE-TTEEEES
T ss_pred CEEEEE--eCCCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHhCCCCcCEEEE-CCEEEeC
Confidence 667888 888999999999999999999998654 68999998 7787755
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.04 Score=43.19 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=41.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEec
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~E 87 (758)
|..++| +.+.+++|.+++-.|..+|++|+...+ ..+|++.+ ||..+.+
T Consensus 1 Mki~iY--s~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i-~~~~i~G 63 (76)
T d1h75a_ 1 MRITIY--TRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA-GDLSWSG 63 (76)
T ss_dssp CCEEEE--ECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE-TTEEEES
T ss_pred CEEEEE--eCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHhcCCCCCCEEEE-CCEEEEC
Confidence 667888 888999999999999999999998654 78999999 7777765
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=93.88 E-value=0.045 Score=42.61 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=46.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
+++| +.+.+++|.+++-+|...|++|+...+ .++|.+.. ||..|-+...+.+|
T Consensus 7 I~iY--s~~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i-~g~~IGG~~el~~y 74 (74)
T d1nm3a1 7 ISIF--TKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFI-GGKHIGGSDDLEKY 74 (74)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE-TTEEEESHHHHHHC
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCCeEEEEccCcHHHHHHHHHhCCccCCEEEE-CCEEEEChHHHhhC
Confidence 6888 888999999999999999999998654 78999988 88999998877765
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=93.68 E-value=0.064 Score=54.90 Aligned_cols=55 Identities=9% Similarity=-0.083 Sum_probs=41.5
Q ss_pred cccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeee-cccc-cccchhh
Q 043341 436 VDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLN-MVYT-LLSKRKL 490 (758)
Q Consensus 436 dD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~-~~~~-klSKR~~ 490 (758)
|=...+.++|..|.|-..|...-.-+...+|...|...+..+|+ +.|+ |||||..
T Consensus 178 Di~~l~~~~vp~G~DQ~~~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~ 234 (343)
T d1h3fa1 178 DSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLD 234 (343)
T ss_dssp HHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred hhhhhcccccccccchHHHHHHHHHHHhhcCccccceeeccccccccccchhhcccc
Confidence 33445678899999998888777778888999888665554444 5674 9999974
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.23 E-value=0.065 Score=54.40 Aligned_cols=75 Identities=20% Similarity=0.101 Sum_probs=50.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecC----CCcc--cchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD----TNPA--KESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieD----td~~--r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
.|.|=|- |||.+||||.-.++-+|..- +.+..++.=|.| |+.. .+..+....+..++-.+|++++ .++.
T Consensus 3 ~v~tG~~--PSG~~HlG~~~g~i~~~~~l-q~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~ 79 (326)
T d1i6la_ 3 TIFSGIQ--PSGVITIGNYIGALRQFVEL-QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFI 79 (326)
T ss_dssp EEEEEEC--CCSCCBHHHHHHTHHHHHHH-TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred eeEeCcC--CCCccHHHHHHHHHHHHHHH-hCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEe
Confidence 4555555 58999999988887666543 346666666655 2221 2334556667778889999998 4678
Q ss_pred ccCCHH
Q 043341 321 TSDYFP 326 (758)
Q Consensus 321 ~S~~~~ 326 (758)
||+.-+
T Consensus 80 qS~~~~ 85 (326)
T d1i6la_ 80 QSEVPA 85 (326)
T ss_dssp GGGCTH
T ss_pred ecccch
Confidence 898754
|
| >d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Glutaredoxin 2 species: Escherichia coli [TaxId: 562]
Probab=92.22 E-value=0.12 Score=45.36 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++..|..|+..|.......| .+|+.||.+|+.|+.+ ....++ .--|+|.+|+++|.++
T Consensus 70 ~~l~~~L~~L~~ll~~~~~~~~-~ls~DDi~lFp~LR~l-tivkgi---~~p~~v~~Y~~~~s~~ 129 (140)
T d1g7oa1 70 KNISDDLRALDKLIVKPNAVNG-ELSEDDIQLFPLLRNL-TLVAGI---NWPSRVADYRDNMAKQ 129 (140)
T ss_dssp HHHHHHHHHHHHHCSSSSCTTS-SCCHHHHHHHHHHHHH-HTSTTS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCC-CccHHHHHHHHHHhhh-HhhcCC---CCCHHHHHHHHHHHHH
Confidence 6778888889888876666555 5999999999999986 333433 3357899999999886
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=91.38 E-value=0.21 Score=39.33 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=46.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+++| +.+.+++|.++...|...|++|+...+ ..+|.+.+ ||..|-+...+..+..
T Consensus 3 I~iy--s~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i-~~~~IGG~~el~~l~~ 73 (82)
T d1fova_ 3 VEIY--TKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI-DAQHIGGYDDLYALDA 73 (82)
T ss_dssp EEEE--ECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE-TTEEEESHHHHHHHHH
T ss_pred EEEE--eCCCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE-CCEEEecHHHHHHHHH
Confidence 5788 788899999999999999999998654 78999988 8888988877776543
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.73 E-value=0.25 Score=49.38 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=43.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCCCc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYETV 318 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d~~ 318 (758)
+.+=|- |||.|||||.- ++..+..-...|...++=|.|. +.........+....++..+|+++..+
T Consensus 31 ~y~G~~--PTG~lHlGh~v-~~~~~~~lq~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~ 103 (306)
T d1j1ua_ 31 AYIGFE--PSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYV 103 (306)
T ss_dssp EEEEEC--CCSSCBHHHHH-HHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEeEC--CCCcchHHHHH-HHHHHHHHHHCCCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHHHhhhcccccc
Confidence 555555 57999999998 5666655555677777777542 222334455566777788999988633
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=88.76 E-value=0.17 Score=53.84 Aligned_cols=51 Identities=16% Similarity=-0.038 Sum_probs=40.4
Q ss_pred ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 481 ~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
.|.|||||+++-. .-..+.+. |+.|+||.|+++.+..-.+..||.++++..
T Consensus 442 ~g~KMSKSlGNVI---------------dP~~iI~~-YGADalRl~ll~~s~~g~di~~s~~~ieg~ 492 (494)
T d1h3na3 442 KPAVMSKSKGNGV---------------MVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGA 492 (494)
T ss_dssp EEEECCTTTTCCC---------------BHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred CceeCCCCCCCcC---------------CHHHHHHH-hCHHHHHHHHHhcCCcccCCCcChhcCeec
Confidence 4779999997422 33456666 999999999998877788899999998763
|
| >d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Bacteriophage T4 [TaxId: 10665]
Probab=88.25 E-value=0.47 Score=37.79 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=43.9
Q ss_pred eEEEecccCC----CCcHHHHHHHHHhcCCCeeeeec--------------------------CCccEEEeCCCcEEech
Q 043341 39 MEIKVLSFPA----DSPPLLVIAAAKLAGITIPTETS--------------------------GSAPTFSFSNGSKLQGT 88 (758)
Q Consensus 39 m~L~~l~~~~----s~~~~~v~i~l~~~gl~~~~~~~--------------------------g~vP~L~~~~g~~l~ES 88 (758)
+++| +... +++|.++.-+|...|++|+...+ .++|.+.+.||..|-+.
T Consensus 2 ~~Iy--~~~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~ 79 (87)
T d1abaa_ 2 FKVY--GYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF 79 (87)
T ss_dssp EEEE--ECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred EEEE--EeCCCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECH
Confidence 5787 6665 88999999999999999976332 47999987678889888
Q ss_pred HHHHHHH
Q 043341 89 YVLLRYI 95 (758)
Q Consensus 89 ~aIl~yL 95 (758)
..+.+|+
T Consensus 80 del~e~~ 86 (87)
T d1abaa_ 80 DQLREYF 86 (87)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8777764
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=80.33 E-value=0.88 Score=35.81 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=45.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcC-----CCeeeeec------------------CCccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAG-----ITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~g-----l~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|-..+| +-+.+++|.++.-+|...| ++|+...+ .++|.+.+ ||..|-+...+..
T Consensus 1 Mkvviy--sk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi-~g~~IGG~~el~~ 77 (85)
T d1egoa_ 1 MQTVIF--GRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV-DQQHIGGYTDFAA 77 (85)
T ss_dssp CEEEEE--CCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE-TTEEEESSHHHHH
T ss_pred CEEEEE--eCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE-CCEEEECHHHHHH
Confidence 445677 8888999999888887755 55543211 36999988 8899999999999
Q ss_pred HHHHh
Q 043341 94 YIGRV 98 (758)
Q Consensus 94 yL~~~ 98 (758)
|+.+.
T Consensus 78 ~~~~~ 82 (85)
T d1egoa_ 78 WVKEN 82 (85)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
|