Citrus Sinensis ID: 044523

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MGCSSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHcHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
mgcsssnssrseVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFrqmnisvpvdplewqisQETANSIVAWLANTVGAAESVLRVAatghdkrlffk
Flexible Loop (DISEMBL)
mgcsssnssrseVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVaatghdkrlffk
Low Complexity Region (SEG)
MGCSSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK
Disordered region (IsUnstruct)
**************KALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGH*******
Disordered Region (DISOPRED)
****************LGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGH*KRLFFK
Disordered Region (DISEMBL)
************VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK
Disordered Region (DISPRO)
***********EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGCSSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8GWH5	164	Reticulon-like protein B2	yes	no	0.901	0.615	0.841	5e-45
P0C941	155	Reticulon-like protein B2	no	no	0.901	0.651	0.811	2e-41

>sp|Q8GWH5|RTNLT_ARATH Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1

 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 96/101 (95%)

Query: 12  EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
           E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 72  EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           EWQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 103

Arabidopsis thaliana (taxid: 3702)

>sp|P0C941|RTNLU_ARATH Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 12  EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
           E+GKA+G+LI G+LVY+HCA RN++LLSLISDV IVLL SLAILGLLFR +N+SVPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 72  EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           EWQISQ+TA +IVA LANTVGAAESVLRVAATGHDKRLF K
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVK 103

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
449513551	188	PREDICTED: reticulon-like protein B22-li	0.973	0.579	0.807	5e-46
388521445	183	unknown [Lotus japonicus]	0.973	0.595	0.798	9e-45
225443379	160	PREDICTED: reticulon-like protein B22 [V	0.919	0.643	0.815	3e-44
388508580	180	unknown [Medicago truncatula]	0.928	0.577	0.807	1e-43
297842673	164	hypothetical protein ARALYDRAFT_895790 [	0.901	0.615	0.841	1e-43
18412164	164	reticulon-like protein B22 [Arabidopsis	0.901	0.615	0.841	2e-43
255544504	169	conserved hypothetical protein [Ricinus	0.937	0.621	0.838	4e-43
356521592	173	PREDICTED: reticulon-like protein B22-li	0.991	0.641	0.765	6e-43
21537390	161	unknown [Arabidopsis thaliana]	0.892	0.621	0.84	1e-42
110737813	164	hypothetical protein [Arabidopsis thalia	0.901	0.615	0.831	2e-42

>gi|449513551|ref|XP_004164355.1| PREDICTED: reticulon-like protein B22-like [Cucumis sativus]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 100/109 (91%)

Query: 4   SSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMN 63
           S S + ++EVGK    LICGSLVYYHCA+RNSSLLSL++DVFIVLLCSLAILGLLFR MN
Sbjct: 19  SRSINCKTEVGKPFVALICGSLVYYHCAFRNSSLLSLVADVFIVLLCSLAILGLLFRHMN 78

Query: 64  ISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           +SVPVDPLEWQ+SQ+TANS++AWLANT+GAAESVLRVAATGHDKRLF K
Sbjct: 79  VSVPVDPLEWQVSQDTANSMIAWLANTIGAAESVLRVAATGHDKRLFVK 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521445|gb|AFK48784.1| unknown [Lotus japonicus]

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 99/109 (90%)

Query: 4   SSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMN 63
            +++    E+GKA+  L+CG+LVYYHCAYRNS+++SL SDVFIVLLCSLAILGLLFRQMN
Sbjct: 12  KTTSVGEREMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMN 71

Query: 64  ISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           I VPVDPLEWQISQ+TAN+IVA LANTVGAAESVLRVAATGHDKRLFFK
Sbjct: 72  IQVPVDPLEWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFK 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443379|ref|XP_002266544.1| PREDICTED: reticulon-like protein B22 [Vitis vinifera] gi|297735759|emb|CBI18446.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 98/103 (95%)

Query: 10  RSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVD 69
           R+E+GK + V+ICG+L+YYHCAYRNS+LL+L+SDV IVLLCSLAILGLLFRQ+NISVPVD
Sbjct: 4   RAEIGKPVIVMICGTLIYYHCAYRNSTLLTLVSDVLIVLLCSLAILGLLFRQINISVPVD 63

Query: 70  PLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           PLEWQISQ+TAN+IVA +ANT+GAAESVLRVAATGHDKRLF K
Sbjct: 64  PLEWQISQDTANNIVACMANTIGAAESVLRVAATGHDKRLFVK 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508580|gb|AFK42356.1| unknown [Medicago truncatula]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 95/104 (91%)

Query: 9   SRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPV 68
            R E+GKA+  L+CG+LVYYHCA++NS+++SL SDVFIVLLCSLAILGLLFRQM I VPV
Sbjct: 15  KRIEIGKAIIALVCGTLVYYHCAFKNSAIVSLFSDVFIVLLCSLAILGLLFRQMTIQVPV 74

Query: 69  DPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           DPLEWQISQ+TAN+IVA  ANTVGAAESVLRVAATGHDKRLFFK
Sbjct: 75  DPLEWQISQDTANTIVASFANTVGAAESVLRVAATGHDKRLFFK 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842673|ref|XP_002889218.1| hypothetical protein ARALYDRAFT_895790 [Arabidopsis lyrata subsp. lyrata] gi|297335059|gb|EFH65477.1| hypothetical protein ARALYDRAFT_895790 [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 96/101 (95%)

Query: 12  EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
           E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 72  EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           EWQISQ+TA+SI+A LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 63  EWQISQDTASSIIARLANTVGAAEGVLRVAATGHDKRLFVK 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412164|ref|NP_565194.1| reticulon-like protein B22 [Arabidopsis thaliana] gi|75150974|sp|Q8GWH5.1|RTNLT_ARATH RecName: Full=Reticulon-like protein B22; Short=AtRTNLB22 gi|26452691|dbj|BAC43428.1| unknown protein [Arabidopsis thaliana] gi|28973105|gb|AAO63877.1| unknown protein [Arabidopsis thaliana] gi|332198049|gb|AEE36170.1| reticulon-like protein B22 [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 96/101 (95%)

Query: 12  EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
           E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 72  EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           EWQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544504|ref|XP_002513313.1| conserved hypothetical protein [Ricinus communis] gi|223547221|gb|EEF48716.1| conserved hypothetical protein [Ricinus communis]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 100/105 (95%)

Query: 8   SSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVP 67
           + ++E+GKA+  ++CG+LVYYHCAYRN+SLLSL+SDV IVLLCSLAILGLLFRQMNISVP
Sbjct: 5   NKKNEMGKAIIGMVCGTLVYYHCAYRNASLLSLLSDVLIVLLCSLAILGLLFRQMNISVP 64

Query: 68  VDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           VDPLEWQISQ+TANSIVAW ANT+GAAESVLRVAATGHDKRLFFK
Sbjct: 65  VDPLEWQISQDTANSIVAWFANTIGAAESVLRVAATGHDKRLFFK 109

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521592|ref|XP_003529438.1| PREDICTED: reticulon-like protein B22-like [Glycine max]

 Score =  177 bits (449), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 2   GCSSSNSSRSE----VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGL 57
           G + S S RS     +GKA+  L+ GSLVYYHCAYRNS+L+SL SDVFIVLLCSLAILGL
Sbjct: 3   GRNGSGSRRSGEAGGMGKAIIALVIGSLVYYHCAYRNSTLVSLFSDVFIVLLCSLAILGL 62

Query: 58  LFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           LFRQM I VPVDPLEWQISQE+AN+IVAWLANT+G AESV RVAATGHDKRLF K
Sbjct: 63  LFRQMGIQVPVDPLEWQISQESANAIVAWLANTIGGAESVFRVAATGHDKRLFLK 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537390|gb|AAM61731.1| unknown [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 95/100 (95%)

Query: 13  VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLE 72
           +GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPLE
Sbjct: 1   MGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPLE 60

Query: 73  WQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           WQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 61  WQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737813|dbj|BAF00845.1| hypothetical protein [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 95/101 (94%)

Query: 12  EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
           E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPV PL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVGPL 62

Query: 72  EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           EWQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:505006229	164	AT1G78895 [Arabidopsis thalian	0.901	0.615	0.841	3.6e-41
TAIR|locus:5019474612	155	AT1G16825 "AT1G16825" [Arabido	0.901	0.651	0.811	7e-38

TAIR|locus:505006229 AT1G78895 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/101 (84%), Positives = 96/101 (95%)

Query:    12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
             E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPL
Sbjct:     3 EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query:    72 EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
             EWQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct:    63 EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 103

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474612 AT1G16825 "AT1G16825" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query:    12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
             E+GKA+G+LI G+LVY+HCA RN++LLSLISDV IVLL SLAILGLLFR +N+SVPVDPL
Sbjct:     3 EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query:    72 EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
             EWQISQ+TA +IVA LANTVGAAESVLRVAATGHDKRLF K
Sbjct:    63 EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVK 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.40    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.23u 0.10s 11.33t   Elapsed:  00:00:00
  Total cpu time:  11.23u 0.10s 11.33t   Elapsed:  00:00:00
  Start:  Mon May 20 16:13:48 2013   End:  Mon May 20 16:13:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWH5	RTNLT_ARATH	No assigned EC number	0.8415	0.9017	0.6158	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam02453	164	pfam02453, Reticulon, Reticulon	6e-06

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 22/98 (22%), Positives = 39/98 (39%)

Query: 15  KALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQ 74
           K+  V     +++   +    SLLS++S + ++LL    +  L  + +N        +  
Sbjct: 12  KSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLNAVPEPLDPDVT 71

Query: 75  ISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
           +S+ET   I   L   +  A   LR    G D     K
Sbjct: 72  LSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLK 109

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	99.88
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	99.34

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.9e-23  Score=161.54  Aligned_cols=98  Identities=23%  Similarity=0.278  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC--CCCCccccCHHHHHHHHHHHHHHH
Q 044523           15 KALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNI-SVP--VDPLEWQISQETANSIVAWLANTV   91 (112)
Q Consensus        15 ~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~-~~P--~iP~e~~isEe~v~~iA~~l~~~i   91 (112)
                      +..++++++|++|++||..+|+++|++|+++++++.++|.|+++..++|| +.|  ++|.|+++|||.+++.|.+++.++
T Consensus        54 ~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~i  133 (230)
T KOG1792|consen   54 KSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEI  133 (230)
T ss_pred             cceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999 677  799899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcccccC
Q 044523           92 GAAESVLRVAATGHDKRLFFK  112 (112)
Q Consensus        92 N~~l~~l~dIA~GkD~klFlk  112 (112)
                      |+.++.+||||+|||++.|+|
T Consensus       134 n~~l~~l~~ia~~~d~~~~lk  154 (230)
T KOG1792|consen  134 NQALSELRDIALGRDLKDFLK  154 (230)
T ss_pred             HHHHHHHHHHHhcccHHHHHH
Confidence            999999999999999999875

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=99.34  E-value=6.3e-15  Score=106.26  Aligned_cols=99  Identities=26%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCCCCccccCHHHHHHHHHH
Q 044523           13 VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISV------PVDPLEWQISQETANSIVAW   86 (112)
Q Consensus        13 ~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~~~------P~iP~e~~isEe~v~~iA~~   86 (112)
                      +=+...++++++++|++|...+|+++|++|+++++.+.+.++|....+++++++      |+.+ +.++|||.+++++..
T Consensus        10 ~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   88 (169)
T PF02453_consen   10 PKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDY-DLEISEERVERLADS   88 (169)
T ss_dssp             -------------------------------------------THCCCTCCHHHHCTTHHHHCH-HHHHCCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccc-cccccHHHHHHHHHH
Confidence            345567889999999999999999999999999999999999999999999988      8888 889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccC
Q 044523           87 LANTVGAAESVLRVAATGHDKRLFFK  112 (112)
Q Consensus        87 l~~~iN~~l~~l~dIA~GkD~klFlk  112 (112)
                      ++..+|..+..+|++..|+|.+.++|
T Consensus        89 ~~~~~n~~~~~~~~l~~~~~~~~~l~  114 (169)
T PF02453_consen   89 VAEWINSVLSWLRRLVFGEDPKKSLK  114 (169)
T ss_dssp             CCCCCCHHHHHHHCCCHCT-TTGGG-
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            99999999999999999999999875

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00