Citrus Sinensis ID: 044708

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccHHHHccccccEEccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccHHHHcHHHcEcccccccccEccEccccccccccccccHEHHHccccEEEccccHEHHHHHHHHccccEEHcEcccccccccccccccccccHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLAcqsqkdpesnsnadgvAQIKItschnrcpvcdgaffptlvNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKgkmqgqgtHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMssegyrltfnddklsLSCELFDSIRLDieltcpvcletvfdpvsltcGHILckmcacsaasvsivdglkladprekcplcrqASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Flexible Loop (DISEMBL)
MKFCKKYEEYMqqkqqklpkvACKKLKKILKKCRLACqsqkdpesnsnadGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKeywenqcrafmgi
Low Complexity Region (SEG)
MKFCkkyeeymqqkqqklpkvackklkkilkkCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Disordered region (IsUnstruct)
*******************KVACKKLKKILKKCRLAC**************VAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNV**********EGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAF***
Disordered Region (DISOPRED)
*KFCKKYEEYM*********VACKKLKKILKK**************************SCHNRCPVCDGAFFPTL******************************************THVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETN*******************************SIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSI***********KCPLCRQASVFMLFLQIYLINGCYI************************YWENQCRAFMGI
Disordered Region (DISEMBL)
MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLA************ADGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Disordered Region (DISPRO)
MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQ********************SCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDKSPWLRELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9SRX9	335	E3 ubiquitin-protein liga	yes	no	0.968	0.904	0.498	3e-87
B8B5U8	321	Probable E3 ubiquitin-pro	N/A	no	0.952	0.928	0.508	4e-85
Q7XI73	321	Probable E3 ubiquitin-pro	yes	no	0.952	0.928	0.505	6e-85
Q7XZZ3	339	Probable E3 ubiquitin-pro	no	no	0.984	0.908	0.348	8e-53
A2XK56	339	Probable E3 ubiquitin-pro	N/A	no	0.984	0.908	0.348	8e-53
Q8GW10	335	Probable E3 ubiquitin-pro	no	no	0.939	0.877	0.323	6e-46
Q3ZEE5	493	Tripartite motif-containi	N/A	no	0.150	0.095	0.415	6e-06
Q8IYM9	498	E3 ubiquitin-protein liga	yes	no	0.175	0.110	0.360	2e-05
Q8BGE7	488	Tripartite motif-containi	yes	no	0.191	0.122	0.333	4e-05
Q1ACD7	494	Tripartite motif-containi	no	no	0.153	0.097	0.396	4e-05

>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1 PE=1 SV=1

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/345 (49%), Positives = 218/345 (63%), Gaps = 42/345 (12%)

Query: 1   MKFCKKYEEYMQQKQQK--LPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKIT 58
           MKFCKKYEEYMQ +++K  LP V  KKLKKILK+CR        P   S  D +      
Sbjct: 1   MKFCKKYEEYMQGQKEKKNLPGVGFKKLKKILKRCR----RNHVPSRISFTDAINH---- 52

Query: 59  SCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGT 118
           +C   CPVCDG FFP L+ +M  VV +FN+ A+KL+ LH A+G  K   W++G  + +  
Sbjct: 53  NCSRECPVCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGNSRKKDH 112

Query: 119 HVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLR 155
           H   LI++GK+LV YALINA+ IRKILKKYDK                       SPWL 
Sbjct: 113 H--GLIQEGKDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQSPWLC 170

Query: 156 ELMALHINLGETNVSSSTMAAMSS-------EGYRLTFNDDKLSLSCELFDSIRLDIELT 208
           ELMA HINL E+   S               +G  LTF+D K  LSCEL DS+++DI+LT
Sbjct: 171 ELMAFHINLKESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVDIDLT 230

Query: 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ 268
           C +CL+TVFDP+SLTCGHI C MCACSAASV++VDGLK A+  EKCPLCR+  V+   + 
Sbjct: 231 CSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVH 290

Query: 269 IYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
           +  +N     SCR+YWE+R + ER ER++QAKEYW+ QCR+F GI
Sbjct: 291 LDELNILLKRSCRDYWEERRKTERAERLQQAKEYWDYQCRSFTGI 335

Mediates E2-dependent protein ubiquitination. Plays a role in salicylic acid-mediated negative feedback regulation of salicylic acid (SA) accumulation. May be involved in the overall regulation of SA, benzoic acid and phenylpropanoid biosynthesis. Controls the adaptability to nitrogen limitation by channeling the phenylpropanoid metabolic flux to the induced anthocyanin synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_27296 PE=3 SV=1

 Score =  314 bits (805), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 171/336 (50%), Positives = 226/336 (67%), Gaps = 38/336 (11%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKF KKYE+YM+   ++LP V  K+LKK+LKKCR   QS ++  S++            C
Sbjct: 1   MKFAKKYEKYMKGMDEELPGVGLKRLKKLLKKCRSDLQSHENDGSSAG----------RC 50

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
              C VCDG+FFP+L+N+MSAVV  FN++AKKL+ LH A+G KKY +W   K  G  +H 
Sbjct: 51  PGHCSVCDGSFFPSLLNEMSAVVGCFNEKAKKLLELHLASGFKKYTMWFTSK--GHKSH- 107

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
            +LI+QGK+LV YA+INA+ +RKILKKYDK                       SPWL EL
Sbjct: 108 GALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKAQAQSLHIEILQSPWLCEL 167

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA ++NL  +  ++  M         L F+DDK ++SC LFDS+R+DI LTC +CL+TVF
Sbjct: 168 MAFYMNLRRSKKNNGAMELFGD--CSLVFDDDKPTISCNLFDSMRVDISLTCSICLDTVF 225

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPV+L+CGHI C +C+CSAASV+IVDGLK A+ + KCPLCRQA VF   + +  +N    
Sbjct: 226 DPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLS 285

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC EYWEKR+Q+ERVERV+ AKE+WE+QCRAF+G+
Sbjct: 286 YSCPEYWEKRIQMERVERVRLAKEHWESQCRAFLGM 321

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa subsp. japonica GN=Os07g0673200 PE=2 SV=1

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/336 (50%), Positives = 226/336 (67%), Gaps = 38/336 (11%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKF KKYE+YM+   ++LP V  K+LKK+LKKCR   QS ++  S++            C
Sbjct: 1   MKFAKKYEKYMKGMDEELPGVGLKRLKKLLKKCRSDLQSHENDGSSAG----------RC 50

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
              C VCDG+FFP+L+N+MSAV+  FN++AKKL+ LH A+G KKY +W   K  G  +H 
Sbjct: 51  PGHCSVCDGSFFPSLLNEMSAVIGCFNEKAKKLLELHLASGFKKYTMWFTSK--GHKSH- 107

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
            +LI+QGK+LV YA+INA+ +RKILKKYDK                       SPWL EL
Sbjct: 108 GALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKAQAQSLHIEILQSPWLCEL 167

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA ++NL  +  ++  M         L F+DDK ++SC LFDS+R+DI LTC +CL+TVF
Sbjct: 168 MAFYMNLRRSKKNNGAMELFGD--CSLVFDDDKPTISCNLFDSMRVDISLTCSICLDTVF 225

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPV+L+CGHI C +C+CSAASV+IVDGLK A+ + KCPLCRQA VF   + +  +N    
Sbjct: 226 DPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLS 285

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC EYWEKR+Q+ERVERV+ AKE+WE+QCRAF+G+
Sbjct: 286 YSCPEYWEKRIQMERVERVRLAKEHWESQCRAFLGM 321

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0650900 PE=2 SV=1

 Score =  207 bits (527), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 36/344 (10%)

Query: 1   MKFCKKYEEYMQQKQQKL----PKVACKKLKKILKKCRLACQSQKD-PESNSNADGVAQI 55
           MKF   YEEY++++Q K       V  K+LKK+LKKCR+    Q+D P  +         
Sbjct: 1   MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQEGNNESP 60

Query: 56  KITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQG 115
            I  C N C +CD  FF  L  + S +   F+ R ++L+NLH  +G  +Y   ++   Q 
Sbjct: 61  DICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVR---QC 116

Query: 116 QGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SP 152
                  ++++G+ L+ Y  +NAI IRKILKKYDK                       SP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176

Query: 153 WLRELMALHINLGETNVSSSTMAAMSSEGYR---LTFNDDKLSLSCELFDSIRLDIELTC 209
           WL EL A H+N   +++   T+  + +E ++       + +  ++  + ++++ +  LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDE-TVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTC 235

Query: 210 PVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQI 269
           P+CL+T+F+P +L+CGH+ CK CAC AASV I  G+K A P  KCP+CR   VF   + +
Sbjct: 236 PICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHM 295

Query: 270 YLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
             ++       ++YW +RL+ ER E VKQ+KEYW++Q    MGI
Sbjct: 296 TELDLLIKTRSKDYWRQRLREERNEMVKQSKEYWDSQAMLSMGI 339

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_12825 PE=3 SV=1

 Score =  207 bits (527), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 36/344 (10%)

Query: 1   MKFCKKYEEYMQQKQQKL----PKVACKKLKKILKKCRLACQSQKD-PESNSNADGVAQI 55
           MKF   YEEY++++Q K       V  K+LKK+LKKCR+    Q+D P  +         
Sbjct: 1   MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQEGNNESP 60

Query: 56  KITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQG 115
            I  C N C +CD  FF  L  + S +   F+ R ++L+NLH  +G  +Y   ++   Q 
Sbjct: 61  DICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVR---QC 116

Query: 116 QGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SP 152
                  ++++G+ L+ Y  +NAI IRKILKKYDK                       SP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176

Query: 153 WLRELMALHINLGETNVSSSTMAAMSSEGYR---LTFNDDKLSLSCELFDSIRLDIELTC 209
           WL EL A H+N   +++   T+  + +E ++       + +  ++  + ++++ +  LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDE-TVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTC 235

Query: 210 PVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQI 269
           P+CL+T+F+P +L+CGH+ CK CAC AASV I  G+K A P  KCP+CR   VF   + +
Sbjct: 236 PICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHM 295

Query: 270 YLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
             ++       ++YW +RL+ ER E VKQ+KEYW++Q    MGI
Sbjct: 296 TELDLLIKTRSKDYWRQRLREERNEMVKQSKEYWDSQAMLSMGI 339

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis thaliana GN=RF178 PE=2 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 176/352 (50%), Gaps = 58/352 (16%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRL--------------ACQSQKDPESN 46
           MKF + + EY+  +++             L+KCR                C S K  +  
Sbjct: 1   MKFGETFTEYLHGEEEWF-----------LEKCRFVEYKKLKKVLKKCKTCNSTKSDDGQ 49

Query: 47  SNADGVAQIKITSCH-NRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKY 105
                 +     SC    CP CD  FF  L+ + + +  +F  R + L++LH A G+++Y
Sbjct: 50  IIPSATSSSLSDSCECKACPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRY 109

Query: 106 FLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYDK--------------- 150
            + ++     +     +L+++G+ L+ Y  +NAI IRKILKKYDK               
Sbjct: 110 MIRLRRCFTDEK---QALVQEGQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMR 166

Query: 151 --------SPWLRELMALHINLGETNVSS--STMAAMSSEGYRLTFNDDKLSLSCELFDS 200
                   SPWL EL A ++N G  NV +  ++   ++ E      N+D+  L   L +S
Sbjct: 167 AERIELLHSPWLIELGAFYLNSGLDNVGNFKNSFGRVACE----NLNEDQPVLKLMLPNS 222

Query: 201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
           I L+ +LTC +CLETVF+P +L CGHI C  CACSAASV I  G+K A    KCP+CR+A
Sbjct: 223 IELEYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREA 282

Query: 261 SVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMG 312
            V+   + +  ++       +EYW++R+  ER E VKQ+K +W  Q +  +G
Sbjct: 283 GVYAEAVHMIELHLLLKTRSKEYWKERMMNERSEMVKQSKMFWNEQTKHMIG 334

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
           E+TCP+CLE +  P+SL CGH  C+ C  +    S+ DG +       CP+CR
Sbjct: 12  EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGER------SCPVCR 58

May have E3 ubiquitin-protein ligase activity.

Hylobates lar (taxid: 9580)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 6/61 (9%)

Query: 200 SIRLDIE--LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
           S+++DIE  +TCP+CLE + +P+SL CGH  C+ C  +    S++    ++     CP+C
Sbjct: 4   SVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVI----ISRGESSCPVC 59

Query: 258 R 258
           +
Sbjct: 60  Q 60

Interferon-induced antiviral protein involved in cell innate immunity. The antiviral activity could in part be mediated by TRIM22-dependent ubiquitination of viral proteins. Plays a role in restricting the replication of HIV-1, encephalomyocarditis virus (EMCV) and hepatitis B virus (HBV). Acts as a transcriptional repressor of HBV core promoter. May have E3 ubiquitin-protein ligase activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 197 LFDSIRLDI--ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKC 254
           +  ++ +DI  E+TCP+CLE + +P+S+ CGH  C++C    ++ S+         R  C
Sbjct: 1   MTSTVLVDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFG----QGGRSSC 56

Query: 255 PLCRQA 260
           P+CR +
Sbjct: 57  PVCRTS 62

Mus musculus (taxid: 10090)

>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys GN=TRIM5 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
           E+TCP+CLE +  P+SL CGH  C+ C  +    S+ D     +    CP+CR
Sbjct: 12  EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPD-----EGERSCPVCR 59

May have E3 ubiquitin-protein ligase activity.

Nomascus leucogenys (taxid: 61853)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
225437340	324	PREDICTED: E3 ubiquitin-protein ligase B	0.961	0.929	0.571	1e-101
224128498	320	predicted protein [Populus trichocarpa]	0.948	0.928	0.580	2e-97
255564140	330	ubiquitin-protein ligase, putative [Rici	0.971	0.921	0.566	2e-96
356505572	324	PREDICTED: E3 ubiquitin-protein ligase B	0.961	0.929	0.571	3e-96
356572738	324	PREDICTED: E3 ubiquitin-protein ligase B	0.961	0.929	0.571	5e-95
356505574	322	PREDICTED: E3 ubiquitin-protein ligase B	0.955	0.928	0.571	1e-94
224068330	320	predicted protein [Populus trichocarpa]	0.948	0.928	0.559	1e-94
356535248	315	PREDICTED: E3 ubiquitin-protein ligase B	0.929	0.923	0.534	2e-92
449436501	330	PREDICTED: E3 ubiquitin-protein ligase B	0.971	0.921	0.525	6e-91
357442533	316	E3 ubiquitin-protein ligase BAH1 [Medica	0.932	0.924	0.545	2e-87

>gi|225437340|ref|XP_002265436.1| PREDICTED: E3 ubiquitin-protein ligase BAH1 [Vitis vinifera] gi|297743873|emb|CBI36843.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/336 (57%), Positives = 242/336 (72%), Gaps = 35/336 (10%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ +++KLP V  KKLKKILK+CR   Q QK  E      GV  + I +C
Sbjct: 1   MKFCKKYQEYMQAQEKKLPGVGFKKLKKILKRCRRDLQIQKGLE------GV--VDIPTC 52

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + C VCDG FFP+L+ +MS +V  FN+RA+KL++LH A+G++KY++W KGK+QG   HV
Sbjct: 53  PHHCQVCDGTFFPSLLKEMSEIVGCFNERAQKLLDLHLASGVRKYYIWFKGKLQG--NHV 110

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
           + LI++GK+LV YA+INA  IRKILKKYDK                       SPWL EL
Sbjct: 111 A-LIQEGKDLVTYAMINATAIRKILKKYDKVHYSKQGQAFKSQAQSMHMEILQSPWLCEL 169

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL E+   S    A+  +G  LTFND K SLSCELFDS++LDI+LTC +CL+TVF
Sbjct: 170 MAFHINLRESKAKSRKAPALF-DGCSLTFNDGKPSLSCELFDSVKLDIDLTCSICLDTVF 228

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C MCACSAASV+IVDGLK+A+P+EKCPLCR+A V+   + +  +N    
Sbjct: 229 DPVSLTCGHIFCYMCACSAASVTIVDGLKIAEPKEKCPLCREAGVYEGAVHLEELNILLS 288

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC EYWE+RLQ ER ER++QAKE+WE+QCRAFMG+
Sbjct: 289 RSCHEYWEQRLQTERTERIRQAKEHWESQCRAFMGV 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128498|ref|XP_002320347.1| predicted protein [Populus trichocarpa] gi|222861120|gb|EEE98662.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 195/336 (58%), Positives = 240/336 (71%), Gaps = 39/336 (11%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ +Q++LP V  KKLKKILKKCR      KD ES+ + DG       SC
Sbjct: 1   MKFCKKYQEYMQGQQKQLPGVDFKKLKKILKKCR------KDFESHQDHDG------QSC 48

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + CPVCDG FFP+LV +MSAVV  FNKRA+KL+ LH A+G +KYF+W +G++Q      
Sbjct: 49  PHHCPVCDGTFFPSLVKEMSAVVGCFNKRAQKLLELHLASGFRKYFMWFQGRLQKDH--- 105

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
           ++LI++GK+LV YALINAI +RKILKKYDK                       SPWL EL
Sbjct: 106 AALIQEGKDLVTYALINAIAVRKILKKYDKIHYSKQGQAFKSKAQSMHIEILQSPWLCEL 165

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL ET V  +   A+  EG  LTF+DDK SLSCELFDSI+LDI+LTC +CL+TVF
Sbjct: 166 MAFHINLRETKVKPNKAPALF-EGCSLTFDDDKPSLSCELFDSIKLDIDLTCSICLDTVF 224

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C MCACSAASV+IVDGLK A+P+EKCPLCR+  V+   L +  +N    
Sbjct: 225 DPVSLTCGHIFCYMCACSAASVTIVDGLKAAEPKEKCPLCRKTGVYEGALHLEELNILLS 284

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            S  +YWE+RLQ ER+ER++Q KE+WE+QCRAFMG+
Sbjct: 285 RSFHKYWEQRLQTERIERIRQVKEHWESQCRAFMGV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564140|ref|XP_002523067.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223537629|gb|EEF39252.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/339 (56%), Positives = 242/339 (71%), Gaps = 35/339 (10%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNAD--GVAQIKIT 58
           MKFCK Y+EYMQ ++++LP +  KKLKKILKKCR      KD ES+   D  G     + 
Sbjct: 1   MKFCKTYQEYMQNQEKELPGLGFKKLKKILKKCR------KDLESHQQLDNNGSPSAHVQ 54

Query: 59  SCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGT 118
            C + CPVCDG FFP+L+N+MSA+V  FN+RA+KL+ LH A+G++KYF+W KGK++G   
Sbjct: 55  HCPHHCPVCDGTFFPSLLNEMSAIVGCFNERAQKLLELHLASGVRKYFMWFKGKLKG--N 112

Query: 119 HVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLR 155
           HV+ L+++GK+LV YALIN+I +RKILKKYDK                       SPWL 
Sbjct: 113 HVA-LMQEGKDLVTYALINSIAVRKILKKYDKIHYSNQGQAFRSQAQSMHIEILQSPWLC 171

Query: 156 ELMALHINLGETNVSSSTMAAMSSEGYRLTFNDD-KLSLSCELFDSIRLDIELTCPVCLE 214
           ELMA HINL ET + S T      +G  LTF+DD K SLSCELFDS++LDI+LTC +CL+
Sbjct: 172 ELMAFHINLRETKIKSRTKVPALFDGCSLTFDDDDKPSLSCELFDSVKLDIDLTCSICLD 231

Query: 215 TVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLING 274
           TVFDPVSLTCGHI C MCACSAASV+IVDGL+ A+P+EKCPLCR+A V    + +  +N 
Sbjct: 232 TVFDPVSLTCGHIFCYMCACSAASVTIVDGLRAAEPKEKCPLCREAGVNEGAVHLEELNI 291

Query: 275 CYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
               SC EYWE+RLQ ERVER++QAKE+WE QCRAFMG+
Sbjct: 292 LLSRSCPEYWEQRLQSERVERIRQAKEHWEFQCRAFMGV 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505572|ref|XP_003521564.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform 1 [Glycine max]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/336 (57%), Positives = 240/336 (71%), Gaps = 35/336 (10%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ +++KLP V  KKLKKILKKCR    SQK           A +   +C
Sbjct: 1   MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRNSSSQKPLH--------ASLAAKTC 52

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + CPVCDG FFP+L+N+MS +V  FN+RA+KL+ LH A+G++KYFLWIKGK+QG  T  
Sbjct: 53  PDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFLWIKGKLQGNHT-- 110

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
            +LI++GK+LV YALINAI IRKILKKYDK                       SPWL EL
Sbjct: 111 -ALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQIQSMHKEILQSPWLCEL 169

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL ET V S    A+  +G  LTF D K +L+CELFDSI++DI+LTC +CL+TVF
Sbjct: 170 MAFHINLRETKVKSRKAHALF-DGCSLTFKDGKPALTCELFDSIKVDIDLTCSICLDTVF 228

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C +CACSAASVSIV+GLK ADP+ KCPLCR+ +V+   + +  +N    
Sbjct: 229 DPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVHLEELNILLS 288

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC+EYWE+R+Q ERVERVKQ KE+W++QCRAF+G+
Sbjct: 289 RSCQEYWEQRIQTERVERVKQIKEHWDSQCRAFVGV 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572738|ref|XP_003554523.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like [Glycine max]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/336 (57%), Positives = 239/336 (71%), Gaps = 35/336 (10%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ +++KLP V  KKLKKILKKCR    S K           A +   +C
Sbjct: 1   MKFCKKYQEYMQGQEKKLPCVGFKKLKKILKKCRRNSSSLKPLN--------ASLAAKTC 52

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + CPVCDG FFP+L+N+MS +V  FN+RA+KL+ LH A+G++KYF WIKGK+QG  T  
Sbjct: 53  PDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFFWIKGKLQGNHT-- 110

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
            +LI++GK+LV YALINAI IRKILKKYDK                       SPWL EL
Sbjct: 111 -ALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCEL 169

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL ET V S    A+  +G  LTF D K SL+CELFDSI++DI+LTC +CL+TVF
Sbjct: 170 MAFHINLRETKVKSRKAHALF-DGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTVF 228

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C +CACSAASVSIV+GLK ADP+ KCPLCR+ +V+   +++  +N    
Sbjct: 229 DPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVRLEELNILLS 288

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC+EYWE+RLQ ERVERVKQ KE+W++QCRAF+G+
Sbjct: 289 RSCQEYWEQRLQTERVERVKQIKEHWDSQCRAFVGV 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505574|ref|XP_003521565.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform 2 [Glycine max]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/336 (57%), Positives = 240/336 (71%), Gaps = 37/336 (11%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ +++KLP V  KKLKKILKKCR    SQK           A +   +C
Sbjct: 1   MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRNSSSQKPLH--------ASLAAKTC 52

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + CPVCDG FFP+L+N+MS +V  FN+RA+KL+ LH A+G++KYFLWIKGK+QG  T  
Sbjct: 53  PDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFLWIKGKLQGNHT-- 110

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
            +LI++GK+LV YALINAI IRKILKKYDK                       SPWL EL
Sbjct: 111 -ALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQIQSMHKEILQSPWLCEL 169

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL ET V S    A+  +G  LTF D K +L+CELFDSI++DI+LTC +CL+TVF
Sbjct: 170 MAFHINLRETKVKSRKAHALF-DGCSLTFKDGKPALTCELFDSIKVDIDLTCSICLDTVF 228

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C +CACSAASVSIV+GLK ADP+ KCPLCR+ +V+   + +  +N   +
Sbjct: 229 DPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVHLEELN--IL 286

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            S REYWE+R+Q ERVERVKQ KE+W++QCRAF+G+
Sbjct: 287 LSRREYWEQRIQTERVERVKQIKEHWDSQCRAFVGV 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068330|ref|XP_002302708.1| predicted protein [Populus trichocarpa] gi|222844434|gb|EEE81981.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/336 (55%), Positives = 238/336 (70%), Gaps = 39/336 (11%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKFCKKY+EYMQ K+ +LP V  KKLKKILKKCR      +D ES+   DG       SC
Sbjct: 1   MKFCKKYQEYMQGKENRLPAVDFKKLKKILKKCR------EDFESHQEHDG------QSC 48

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTHV 120
            + C VCDG FFP+L+ +MSAVV  FN+RA+KL+ LH  +G +KYF+W KGK+Q +  HV
Sbjct: 49  PHHCSVCDGTFFPSLLKEMSAVVGCFNERAQKLLELHLVSGFRKYFMWFKGKLQKK--HV 106

Query: 121 SSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLREL 157
           +  I++GK+LV YALINA+ +RKILKKYDK                       SPWL EL
Sbjct: 107 A-FIQEGKDLVTYALINAVAVRKILKKYDKIHYSKQGQTFKSKAQSMHIEILHSPWLCEL 165

Query: 158 MALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVF 217
           MA HINL E  + S+ + A+  EG  L F+D+K SLSCELFDS+++DI+LTC +CL+TVF
Sbjct: 166 MAFHINLREEKIKSNKVPALF-EGCSLNFDDEKPSLSCELFDSVKIDIDLTCSICLDTVF 224

Query: 218 DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYI 277
           DPVSLTCGHI C MCACSAASV+IVDGLK A+P+EKCPLCR+  V+   L +  +N    
Sbjct: 225 DPVSLTCGHIFCHMCACSAASVTIVDGLKAAEPKEKCPLCRKTGVYEGSLHLEELNILLS 284

Query: 278 NSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
            SC EYWE+RLQ ER+ER++Q KE+WE+QCRAF+G+
Sbjct: 285 RSCHEYWEQRLQTERIERIRQVKEHWESQCRAFVGV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535248|ref|XP_003536160.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like [Glycine max]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/337 (53%), Positives = 224/337 (66%), Gaps = 46/337 (13%)

Query: 1   MKFCKKYEEYMQ-QKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITS 59
           MKFCK Y++YMQ     KLP V  K LKKI+K CR A                      +
Sbjct: 1   MKFCKTYQQYMQGHGHNKLPSVGFKNLKKIIKSCRRASTQ------------------PT 42

Query: 60  CHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTH 119
           C + CPVCDG FFP+L+N+MS +V  FN+RA++L+ LH A+G +KYFL +KGK+    T 
Sbjct: 43  CPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQQLLELHLASGFRKYFLMLKGKLHKNHT- 101

Query: 120 VSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLRE 156
             +LIE+GK+LV+YALIN+I IRKILKKYDK                       SPWL E
Sbjct: 102 --ALIEEGKDLVIYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCE 159

Query: 157 LMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETV 216
           L+ALHINL ET       +A+  +G  LTF D K SL+CELFDS+++DI+LTC +CL+TV
Sbjct: 160 LIALHINLRETKSKPREASALF-DGCYLTFTDGKPSLTCELFDSVKIDIDLTCSICLDTV 218

Query: 217 FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCY 276
           FD VSLTCGHI C  CACS ASV+IVDGLK A+P+EKCPLCR+  V+   + +  +N   
Sbjct: 219 FDSVSLTCGHIFCYTCACSTASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILL 278

Query: 277 INSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
             SCREYWE+RLQ+ERVERVKQ KE+WE QCRAFMGI
Sbjct: 279 GRSCREYWEQRLQMERVERVKQVKEHWETQCRAFMGI 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436501|ref|XP_004136031.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like [Cucumis sativus]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/339 (52%), Positives = 230/339 (67%), Gaps = 35/339 (10%)

Query: 1   MKFCKKYEEYM--QQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGV-AQIKI 57
           MKFCKKYEEY+  Q+K+ KLP    K+LKKILK C    QS+     + + DG  + + I
Sbjct: 1   MKFCKKYEEYLRGQEKKLKLPGFHFKRLKKILKNCSRDFQSR-----HRHGDGTCSAVAI 55

Query: 58  TSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQG 117
            +C ++C VCDG FFP L+N+MSA+V  FN+RA+KL+ LH A+G +KY LW KGK++   
Sbjct: 56  HTCPDQCSVCDGTFFPFLLNEMSAIVGGFNQRAQKLLELHLASGFRKYLLWFKGKLESDH 115

Query: 118 THVSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWL 154
              + L+++GKELV YAL+NAI +RKILKKYDK                       SPWL
Sbjct: 116 ---AVLVQEGKELVNYALMNAIAVRKILKKYDKIHYSKQGQTFKSQAQSKHIEILQSPWL 172

Query: 155 RELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLE 214
            EL+A HINL ET   S  +++ + E   L   D K SL+CELFDS++LDI+LTC +CLE
Sbjct: 173 SELIAFHINLKETKHKSKRISS-AFEECSLAITDGKPSLTCELFDSVKLDIDLTCSICLE 231

Query: 215 TVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLING 274
            VFDPVSLTCGHI C MCACSAASV+IVDGLK A+ + KCPLCR+A V+   + +  +N 
Sbjct: 232 IVFDPVSLTCGHIFCYMCACSAASVTIVDGLKSANAKAKCPLCREARVYEGAVHLEELNI 291

Query: 275 CYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
               SC EYWEKRL+ ER ERV+QAK++WE+  RAFMG+
Sbjct: 292 LLSQSCPEYWEKRLETERAERVQQAKDHWESMSRAFMGV 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442533|ref|XP_003591544.1| E3 ubiquitin-protein ligase BAH1 [Medicago truncatula] gi|355480592|gb|AES61795.1| E3 ubiquitin-protein ligase BAH1 [Medicago truncatula]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/337 (54%), Positives = 229/337 (67%), Gaps = 45/337 (13%)

Query: 1   MKFCKKYEEYMQ-QKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITS 59
           MKFCK Y+EYMQ Q+Q+KLP V  KKLKKI+KKCR + Q  K                  
Sbjct: 1   MKFCKTYQEYMQAQEQKKLPVVGFKKLKKIMKKCRRSSQFHK-----------------P 43

Query: 60  CHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGTH 119
           C ++CP+CDG FFP+L+N+MS +V  FN+RA+KL+  H A+G +KY L +KGK +    +
Sbjct: 44  CPDQCPLCDGTFFPSLLNEMSEIVGCFNQRAQKLLERHLASGFQKYILMLKGKSK---RN 100

Query: 120 VSSLIEQGKELVVYALINAIMIRKILKKYDK-----------------------SPWLRE 156
            S+LI +G++LV YALINA+ IRKILKKYDK                       SPWL E
Sbjct: 101 HSTLIHEGRDLVTYALINAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIE 160

Query: 157 LMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETV 216
           LMALHINL ET        A+ + G  LTF D K SL+CELFDSI++DI+LTC +CL+TV
Sbjct: 161 LMALHINLRETKDKPRKATALFN-GCCLTFKDGKPSLACELFDSIKIDIDLTCSICLDTV 219

Query: 217 FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCY 276
           FDPVSLTCGHI C  CACSAASV+IVDGLK    +EKCP+CR+A V+   + +  +N   
Sbjct: 220 FDPVSLTCGHIFCYSCACSAASVTIVDGLKETHSKEKCPMCREAGVYEGAVHLEELNILL 279

Query: 277 INSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
             SC+EYWE+RLQ+ERVERVKQAKE+WE QCRAFMGI
Sbjct: 280 GKSCKEYWEERLQMERVERVKQAKEHWETQCRAFMGI 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2024675	335	NLA "nitrogen limitation adapt	0.552	0.516	0.533	2e-73
TAIR|locus:2064935	335	AT2G38920 [Arabidopsis thalian	0.504	0.471	0.414	9.8e-48
UNIPROTKB|A2AE50	122	TRIM26 "Tripartite motif-conta	0.156	0.401	0.350	2.5e-08
UNIPROTKB|Q5SPU2	157	TRIM26 "Tripartite motif-conta	0.156	0.312	0.350	2.1e-07
UNIPROTKB|C9JWN8	72	TRIM5 "Tripartite motif-contai	0.153	0.666	0.396	1.4e-06
UNIPROTKB|C9J060	203	TRIM22 "E3 ubiquitin-protein l	0.175	0.270	0.360	2.6e-06
UNIPROTKB|D6RAS2	90	TRIM60 "Tripartite motif-conta	0.159	0.555	0.413	4e-06
UNIPROTKB|C9JIU5	227	TRIM22 "E3 ubiquitin-protein l	0.175	0.242	0.360	4.7e-06
UNIPROTKB|G3N137	160	G3N137 "Uncharacterized protei	0.210	0.412	0.410	7.4e-06
UNIPROTKB|E1BM69	497	LOC516599 "Uncharacterized pro	0.172	0.108	0.413	9.9e-06

TAIR|locus:2024675 NLA "nitrogen limitation adaptation" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 96/180 (53%), Positives = 129/180 (71%)

Query:   141 IRKILKKYDKSPWLRELMALHINLGETNVSS-STMAAMSS------EGYRLTFNDDKLSL 193
             ++K+  +  +SPWL ELMA HINL E+   S +T+ +         +G  LTF+D K  L
Sbjct:   156 VQKMRIEILQSPWLCELMAFHINLKESKKESGATITSPPPPVHALFDGCALTFDDGKPLL 215

Query:   194 SCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREK 253
             SCEL DS+++DI+LTC +CL+TVFDP+SLTCGHI C MCACSAASV++VDGLK A+  EK
Sbjct:   216 SCELSDSVKVDIDLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEK 275

Query:   254 CPLCRQASVFMLFLQIYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMGI 313
             CPLCR+  V+   + +  +N     SCR+YWE+R + ER ER++QAKEYW+ QCR+F GI
Sbjct:   276 CPLCREDGVYKGAVHLDELNILLKRSCRDYWEERRKTERAERLQQAKEYWDYQCRSFTGI 335

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010167 "response to nitrate" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009697 "salicylic acid biosynthetic process" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0080021 "response to benzoic acid stimulus" evidence=IEP;IMP

GO:0006817 "phosphate ion transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

TAIR|locus:2064935 AT2G38920 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 68/164 (41%), Positives = 99/164 (60%)

Query:   151 SPWLRELMALHINLGETNVSS--STMAAMSSEGYRLTFNDDKLSLSCELFDSIRLDIELT 208
             SPWL EL A ++N G  NV +  ++   ++ E      N+D+  L   L +SI L+ +LT
Sbjct:   175 SPWLIELGAFYLNSGLDNVGNFKNSFGRVACEN----LNEDQPVLKLMLPNSIELEYDLT 230

Query:   209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ 268
             C +CLETVF+P +L CGHI C  CACSAASV I  G+K A    KCP+CR+A V+   + 
Sbjct:   231 CAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVH 290

Query:   269 IYLINGCYINSCREYWEKRLQIERVERVKQAKEYWENQCRAFMG 312
             +  ++       +EYW++R+  ER E VKQ+K +W  Q +  +G
Sbjct:   291 MIELHLLLKTRSKEYWKERMMNERSEMVKQSKMFWNEQTKHMIG 334

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006817 "phosphate ion transport" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

UNIPROTKB|A2AE50 TRIM26 "Tripartite motif-containing protein 26" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query:   203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
             L+ E+TC +CL+ + DPV++ CGH+ C+ C      +S          R  CPLC++
Sbjct:    10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPIS--------GSRPVCPLCKK 58

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5SPU2 TRIM26 "Tripartite motif-containing protein 26" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query:   203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
             L+ E+TC +CL+ + DPV++ CGH+ C+ C      +S          R  CPLC++
Sbjct:    10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPIS--------GSRPVCPLCKK 58

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|C9JWN8 TRIM5 "Tripartite motif-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query:   206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
             E+TCP+CLE +  P+SL CGH  C+ C  +    S++D          CP+CR
Sbjct:    12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD-----KGESSCPVCR 59

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|C9J060 TRIM22 "E3 ubiquitin-protein ligase TRIM22" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query:   200 SIRLDIE--LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
             S+++DIE  +TCP+CLE + +P+SL CGH  C+ C  +    S++    ++     CP+C
Sbjct:     4 SVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVI----ISRGESSCPVC 59

Query:   258 R 258
             +
Sbjct:    60 Q 60

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RAS2 TRIM60 "Tripartite motif-containing protein 60" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query:   201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
             + L  E +CP+CLE + DPV++ CGH  C+ C     SVS  D     D    CP+CR
Sbjct:     8 VNLQEESSCPICLEYLKDPVTINCGHNFCRSCL----SVSWKD----LDDTFPCPVCR 57

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|C9JIU5 TRIM22 "E3 ubiquitin-protein ligase TRIM22" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query:   200 SIRLDIE--LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
             S+++DIE  +TCP+CLE + +P+SL CGH  C+ C  +    S++    ++     CP+C
Sbjct:     4 SVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVI----ISRGESSCPVC 59

Query:   258 R 258
             +
Sbjct:    60 Q 60

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3N137 G3N137 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 30/73 (41%), Positives = 39/73 (53%)

Query:   191 LSLSCELFDSIR---LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKL 247
             L+ S  LF S++   L+ ELTCP+CLE   DP+ L C H LC  CA      S   G  +
Sbjct:     1 LNASAGLF-SLKMETLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSSGESI 59

Query:   248 ADPRE--KCPLCR 258
              +P    +CP CR
Sbjct:    60 -EPITAFQCPTCR 71

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1BM69 LOC516599 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query:   201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
             + L  E+TCP+CLE + +P+SL CGH  C++C  + ++ S+  G + A    KCP+CR
Sbjct:     7 VSLQDEVTCPICLELLTEPLSLDCGHSFCQICITANSNESLT-GQERA---RKCPVCR 60

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XI73	BAHL2_ORYSJ	6, ., 3, ., 2, ., -	0.5059	0.9520	0.9283	yes	no
Q9SRX9	BAH1_ARATH	6, ., 3, ., 2, ., -	0.4985	0.9680	0.9044	yes	no
B8B5U8	BAHL2_ORYSI	6, ., 3, ., 2, ., -	0.5089	0.9520	0.9283	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027985001 SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (324 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam03105	176	pfam03105, SPX, SPX domain	9e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-05
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	1e-04
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-04
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	0.002
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	0.003
PRK11009	237	PRK11009, aphA, acid phosphatase/phosphotransferas	0.003
smart00184	40	smart00184, RING, Ring finger	0.004

>gnl|CDD|217372 pfam03105, SPX, SPX domain

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 1   MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSC 60
           MKF K  E  +  + +    +  K LKK++K+       +      +N DG  +      
Sbjct: 1   MKFGKSLERNLVPEWRDK-YIDYKALKKLIKELT-----RAKLSLTTNEDGEDESSNLLN 54

Query: 61  HNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAAGLKKYFLWIKGKMQGQGT-- 118
                  +  FF  L  ++  V  ++ ++  +L+   +    +   L  +          
Sbjct: 55  EEELEEDESEFFEALDKELEKVNSFYKEKEAELLERLEELEKQLEELEERRDETSSAKSS 114

Query: 119 ---------------HVSSLIEQGKELVVYALINAIMIRKILKKYDK 150
                           +  L  + + L  Y  +N    RKILKKYDK
Sbjct: 115 PSDKNLLKAFEELKKALLELYRELQLLKSYIELNRTGFRKILKKYDK 161

We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N-terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal. This finding suggests that all the members of this family are involved in G-protein associated signal transduction. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family. The SPX domain of S. cerevisiae low-affinity phosphate transporters Pho87 and Pho90 auto-regulates uptake and prevents efflux. This SPX dependent inhibition is mediated by the physical interaction with Spl2 NUC-2 contains several ankyrin repeats pfam00023. Several members of this family are annotated as XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with murine leukaemia viruses (MLV). The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction and may itself function as a phosphate sensor. Length = 176

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 208 TCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            CP+CLE   +PV L  CGH+ C+ C              L   +  CPLCR 
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKW----------LKSGKNTCPLCRT 43

Length = 45

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV 262
           C +CLE    P    CGH+ C  C        ++         E CPLCR    
Sbjct: 218 CFLCLEEPEVPSCTPCGHLFCLSC--------LLISWTKKKY-EFCPLCRAKVY 262

Length = 271

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 12/55 (21%)

Query: 206 ELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           EL CP+CL+ + DP V   CGH+ C+ C            L+    + KCP+CR 
Sbjct: 2   ELECPICLDLLRDPVVLTPCGHVFCRECI-----------LRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)

Query: 208 TCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            CP+CL+        V L CGH+  K C       S             CPLCR 
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN-----------TCPLCRA 45

Length = 46

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCA-----CSAASVSIVDGLKLADPREKCPLCRQA 260
           +  C +CL+ V DPV   CGH+ C  C       S  S   VD         KCP+C+  
Sbjct: 18  DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77

Query: 261 SVFMLFLQIY 270
                 + IY
Sbjct: 78  VSEATLVPIY 87

Length = 193

>gnl|CDD|236818 PRK11009, aphA, acid phosphatase/phosphotransferase; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 90  AKKLINLHQAAGLKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYD 149
           A++LI++H   G   YF  I G+   +   VS  +     +    +   I       +Y 
Sbjct: 119 ARQLIDMHVKRGDSIYF--ITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYT 176

Query: 150 KSPWLRE 156
           K+ WL++
Sbjct: 177 KTQWLKK 183

Length = 237

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 11/50 (22%)

Query: 209 CPVCLETVF-DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
           CP+CLE    DPV L CGH  C+ C              L      CP+C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKW----------LESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG1161	310	consensus Protein involved in vacuolar polyphospha	99.89
PF03105	275	SPX: SPX domain; InterPro: IPR004331 The SPX domai	99.87
KOG1162	617	consensus Predicted small molecule transporter [In	99.82
COG5036	509	SPX domain-containing protein involved in vacuolar	99.48
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.44
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.42
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.29
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.26
COG5408	296	SPX domain-containing protein [Signal transduction	99.22
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.22
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.22
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.08
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.06
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.05
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.04
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.01
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.0
PHA02929	238	N1R/p28-like protein; Provisional	98.96
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.93
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.88
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.88
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.87
KOG2660	331	consensus Locus-specific chromosome binding protei	98.77
PHA02926	242	zinc finger-like protein; Provisional	98.76
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.71
PF14634	44	zf-RING_5: zinc-RING finger domain	98.7
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.59
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.59
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.59
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.58
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.51
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.46
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.19
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.13
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.03
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.92
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.88
COG5152	259	Uncharacterized conserved protein, contains RING a	97.88
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.83
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.78
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.68
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.61
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.61
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.46
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.35
KOG1001	674	consensus Helicase-like transcription factor HLTF/	97.32
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.19
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.99
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.64
PF04641	260	Rtf2: Rtf2 RING-finger	96.57
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.54
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.46
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.36
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.34
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.2
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.01
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	96.0
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.95
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.93
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.87
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.85
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.72
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.52
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.38
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.32
KOG4739	233	consensus Uncharacterized protein involved in syna	95.28
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.68
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.61
KOG3002	299	consensus Zn finger protein [General function pred	94.53
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.47
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.38
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.33
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.32
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.3
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.26
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	94.24
COG5219	1525	Uncharacterized conserved protein, contains RING Z	94.1
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	93.29
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.22
PHA03096	284	p28-like protein; Provisional	93.07
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	92.76
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	91.63
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	90.57
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	90.11
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.0
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	89.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.19
COG5109	396	Uncharacterized conserved protein, contains RING Z	89.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.76
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	88.7
KOG0298	1394	consensus DEAD box-containing helicase-like transc	87.06
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	84.07
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	83.95
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	83.87
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	82.98
KOG3113	293	consensus Uncharacterized conserved protein [Funct	82.78
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	82.6
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	82.57
KOG1940	276	consensus Zn-finger protein [General function pred	80.51

>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]

Probab=99.89  E-value=6e-23  Score=185.67  Aligned_cols=123  Identities=23%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708            1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS   80 (313)
Q Consensus         1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~   80 (313)
                      |||||.|++.+.| +|+++||+||.|||+||+.......... ++                    ..+.+|+..|++||+
T Consensus         1 MkFGk~L~~~~l~-ew~~~yinYk~LKK~lK~~~~~~~~~~~-~~--------------------~~e~dFv~~Ld~ELE   58 (310)
T KOG1161|consen    1 MKFGKYLKEELLP-EWKDKYINYKELKKLLKQYSIQTADSSP-DS--------------------RDESDFVRLLDAELE   58 (310)
T ss_pred             CchhHHHHHhhhh-hHhhhhcCHHHHHHHHHHhccccccCCc-cc--------------------chHHHHHHHHHHHHH
Confidence            9999999988888 6899999999999999997543221100 00                    037789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh------h-----hHHHHHHHHccccCCCccHHHHHHHhHHHHHHHHhhHHHHHHHHhhcC
Q 044708           81 AVVRYFNKRAKKLINLHQAA------G-----LKKYFLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYD  149 (313)
Q Consensus        81 ki~~ff~~r~~~l~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~y~~lN~tg~rKilkk~~  149 (313)
                      ||++||.++.++++.+....      +     ...-+..++..      .. ++.++...|.+|++||+|||+|||||||
T Consensus        59 Kv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~------l~-~~~~em~~L~~fs~LN~tGf~KILKK~D  131 (310)
T KOG1161|consen   59 KVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELREE------LV-DFHGEMVLLENFSRLNYTGFAKILKKHD  131 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHH------HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            99999999888875443210      0     00011112221      12 5566778999999999999999999999


Q ss_pred             Chh
Q 044708          150 KSP  152 (313)
Q Consensus       150 k~~  152 (313)
                      |+.
T Consensus       132 Krt  134 (310)
T KOG1161|consen  132 KRT  134 (310)
T ss_pred             ccc
Confidence            943

>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins

Probab=99.87  E-value=1.2e-22  Score=184.75  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCC----------------------CCCCCCCc----hh
Q 044708            1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPE----------------------SNSNADGV----AQ   54 (313)
Q Consensus         1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~----------------------~~~~~~~~----~~   54 (313)
                      |||||+|+..+.| +|+.+||+||.|||+||++...........                      ......+.    +.
T Consensus         1 MKFgk~L~~~~vp-EW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (275)
T PF03105_consen    1 MKFGKQLQENAVP-EWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTSPS   79 (275)
T ss_pred             CCchHHHHHhcCH-HHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccccc
Confidence            9999999999999 679999999999999999977644321000                      00000000    00


Q ss_pred             hhhhhccCCCCcchhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044708           55 IKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLIN   95 (313)
Q Consensus        55 ~~~~~~~~~~~~~~~~Ff~~l~~El~ki~~ff~~r~~~l~~   95 (313)
                      .............+..||..|+.||+||+.||.++..++..
T Consensus        80 ~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~  120 (275)
T PF03105_consen   80 SSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRE  120 (275)
T ss_pred             ccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            00000001223368899999999999999999988877643

This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].

>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.5e-20  Score=184.80  Aligned_cols=137  Identities=23%  Similarity=0.313  Sum_probs=92.5

Q ss_pred             CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708            1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS   80 (313)
Q Consensus         1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~   80 (313)
                      |||||.|.++++| +|+.+||||+.||++||++....+...+.+.         -...+   +....+..||..||.|+.
T Consensus         1 MKFgk~~~~q~~p-EW~~ay~dY~~lK~~l~~i~~~~~~~~~t~~---------~~~~~---~~~~~~~~Ff~~ld~el~   67 (617)
T KOG1162|consen    1 MKFGKELESQLVP-EWRQAYIDYKYLKKLLKEIIENKPSSEETTF---------LMVSE---EGGEFEEVFFRRLDEELN   67 (617)
T ss_pred             CcchHHHHHhcCH-HHHHHhhhHHHHHHHHHHHHhcCCCcCccHH---------HHHHH---hhhhhHHHHHHHHHHHHH
Confidence            9999999999999 5799999999999999999775543321110         01111   344578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHcc----ccC---------C--C----------ccHHHHHHHhHHHHHHH
Q 044708           81 AVVRYFNKRAKKLINLHQAAG-LKKYFLWIKGK----MQG---------Q--G----------THVSSLIEQGKELVVYA  134 (313)
Q Consensus        81 ki~~ff~~r~~~l~~~~~~~~-~~~~~~~~~~~----~~~---------~--~----------~~~~~l~~~~~~L~~y~  134 (313)
                      |||.||.+++++..+++..-. ..+.+..+|..    +..         .  +          .-.+++-...+.|+||+
T Consensus        68 Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~  147 (617)
T KOG1162|consen   68 KVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQ  147 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888765543211 00111111110    000         0  0          00002223345899999


Q ss_pred             HhhHHHHHHHHhhcCC
Q 044708          135 LINAIMIRKILKKYDK  150 (313)
Q Consensus       135 ~lN~tg~rKilkk~~k  150 (313)
                      .||.||||||+|||||
T Consensus       148 ~lN~~~f~KI~KKyDK  163 (617)
T KOG1162|consen  148 FLNVTAFRKILKKYDK  163 (617)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999998

>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.3e-13  Score=128.14  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=84.3

Q ss_pred             CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCCCCCCCchhhhhhhccCCCCcchhchhHHHHHHHH
Q 044708            1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMS   80 (313)
Q Consensus         1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ff~~l~~El~   80 (313)
                      |+||++|.+-+-+ +|+..||||..||+.||+-..        .+.         ..       +..+.+|..+|+.||+
T Consensus         1 M~Fg~~L~~~ly~-p~k~~YinYe~LK~~lK~~~~--------~~~---------w~-------e~dEsdFVe~Ld~eLe   55 (509)
T COG5036           1 MRFGKKLKNNLYP-PYKYSYINYENLKKLLKESEE--------EGS---------WS-------ESDESDFVEELDKELE   55 (509)
T ss_pred             CchhHHHHhccCc-ccccccCCHHHHHHHHhhccc--------cCC---------Cc-------ccchHHHHHHHHHHHH
Confidence            9999999999888 689999999999999999111        000         00       1146789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHccccCCCccHHHHHH---HhHHHHHHHHhhHHHHHHHHhhcCChhh
Q 044708           81 AVVRYFNKRAKKLINLHQAA--GLKKYFLWIKGKMQGQGTHVSSLIE---QGKELVVYALINAIMIRKILKKYDKSPW  153 (313)
Q Consensus        81 ki~~ff~~r~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~y~~lN~tg~rKilkk~~k~~~  153 (313)
                      ||-+|=.++..+++++-...  .....++.+-.     +.....|..   +...|.+|..||+|||.||+|||||+|.
T Consensus        56 KVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds-----~~~~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~  128 (509)
T COG5036          56 KVYGFQLSKYSEVMERLRTLEEQTDEAIQELDS-----DNFPKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTG  128 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHhhcccC-----CcchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCC
Confidence            99999877777765442211  11111111110     011102222   3348999999999999999999999664

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.44  E-value=8.2e-14  Score=90.99  Aligned_cols=42  Identities=40%  Similarity=0.959  Sum_probs=30.8

Q ss_pred             cccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       209 C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      ||||+++|.+||+++|||+||..||.+++.       ........||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~-------~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWK-------EPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHC-------CSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHH-------ccCCcCCCCcCC
Confidence            899999999999999999999999999982       111233789988

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.42  E-value=1.7e-13  Score=130.00  Aligned_cols=91  Identities=23%  Similarity=0.411  Sum_probs=76.9

Q ss_pred             ccCCCcccchhcccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          185 TFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      +++++..++.+.+.....++..+.|+||.+++.+|++++|||+||..||..++           .....||.|+..+...
T Consensus         5 di~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l-----------~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599         5 DITDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCL-----------SNQPKCPLCRAEDQES   73 (397)
T ss_pred             cCCCchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHH-----------hCCCCCCCCCCccccc
Confidence            66777788888888888899999999999999999999999999999999987           2345899999998765


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhH
Q 044708          265 LFLQIYLINGCYINSCREYWEKRLQI  290 (313)
Q Consensus       265 ~~~~~~~~n~~l~~l~~~~~~~~~~~  290 (313)
                      ..    ..|..|.++++.|...|...
T Consensus        74 ~L----r~N~~L~~iVe~~~~~R~~L   95 (397)
T TIGR00599        74 KL----RSNWLVSEIVESFKNLRPSL   95 (397)
T ss_pred             cC----ccchHHHHHHHHHHHhhHHH
Confidence            44    37899999999997766554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00504 Ubox Modified RING finger domain

Probab=99.29  E-value=3e-12  Score=91.03  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      ++.||||++++.+||.++|||+||+.||..|+.           ....||.|+.++...+..    .|..+++.++
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~-----------~~~~cP~~~~~~~~~~l~----~~~~l~~~i~   61 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL-----------SHGTDPVTGQPLTHEDLI----PNLALKSAIQ   61 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH-----------HCCCCCCCcCCCChhhce----eCHHHHHHHH
Confidence            468999999999999999999999999999982           256899999998776655    5566666554

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.26  E-value=3.6e-12  Score=115.73  Aligned_cols=79  Identities=20%  Similarity=0.335  Sum_probs=67.2

Q ss_pred             ccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHH
Q 044708          197 LFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCY  276 (313)
Q Consensus       197 ~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l  276 (313)
                      ++....++..++|.||.++|..|+.+||+|+||.-||..++           ...+.||.|+.+++...+.    -|+++
T Consensus        14 ipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L-----------~~~p~CP~C~~~~~Es~Lr----~n~il   78 (442)
T KOG0287|consen   14 IPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFL-----------SYKPQCPTCCVTVTESDLR----NNRIL   78 (442)
T ss_pred             CchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHh-----------ccCCCCCceecccchhhhh----hhhHH
Confidence            33444577889999999999999999999999999999998           7788999999998877654    88999


Q ss_pred             HHHHHHHHHHHHhH
Q 044708          277 INSCREYWEKRLQI  290 (313)
Q Consensus       277 ~~l~~~~~~~~~~~  290 (313)
                      ..|+..|.-.|...
T Consensus        79 ~Eiv~S~~~~R~~L   92 (442)
T KOG0287|consen   79 DEIVKSLNFARNHL   92 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987766543

>COG5408 SPX domain-containing protein [Signal transduction mechanisms]

Probab=99.22  E-value=1.9e-11  Score=110.87  Aligned_cols=86  Identities=13%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             CCCccccHHHHhccccCCCccchHHHHHHHHhchhhccCCCCCCCC---CCCCCchhhhhhh---------ccCCCCcch
Q 044708            1 MKFCKKYEEYMQQKQQKLPKVACKKLKKILKKCRLACQSQKDPESN---SNADGVAQIKITS---------CHNRCPVCD   68 (313)
Q Consensus         1 MKFgk~~~~~~~~~~~~~~yi~Yk~LKk~ik~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~   68 (313)
                      ||||+.|..+..| +|+.+||+||.|||+|+.+...+.....+.++   +.+++.+++....         ..+..+...
T Consensus         1 MKF~~~L~~naVP-EWss~Y~dYk~lKKlI~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~dr~~~~l~~~~s~~~~~~v   79 (296)
T COG5408           1 MKFGHSLQFNAVP-EWSSKYIDYKQLKKLIYSLQKDQLSSYHGVSDNDETRDEAGEPSNWRDRFNHALKKELSPLQANYV   79 (296)
T ss_pred             Ccchhhhhhccch-hhHHhhhhHHHHHHHHHHHhcchhhhhccCCccccccccccCCCChhhhhcchhhhhhhhHHHHHH
Confidence            9999999999999 67999999999999999998765543322211   2222222211100         011223346


Q ss_pred             hchhHH-HHHHHHHHHHHHH
Q 044708           69 GAFFPT-LVNDMSAVVRYFN   87 (313)
Q Consensus        69 ~~Ff~~-l~~El~ki~~ff~   87 (313)
                      .+||+. +..|+.|++.||.
T Consensus        80 ~~f~e~~i~~e~~k~~e~~~   99 (296)
T COG5408          80 AKFFENYISEEAIKLDEFYS   99 (296)
T ss_pred             HHHHHHhhhHHHHHHHhhhc
Confidence            788888 9999999999974

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.22  E-value=7.5e-12  Score=107.03  Aligned_cols=64  Identities=27%  Similarity=0.556  Sum_probs=48.1

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhcc-----ccCCCCCCCCCCCcCCccchhh
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDG-----LKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~-----~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ..+++.|+||++.+.+|++++|||.||+.||..|+.......     .........||+||.++.....
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            346789999999999999999999999999999974221100     0112346799999999876553

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.22  E-value=1.9e-11  Score=89.76  Aligned_cols=69  Identities=22%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHHH
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCREY  283 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~  283 (313)
                      .+.+.|||+.+++.+||.++|||+|++.||..|+.          .....||.|+.++...+.+    .|..+++.++.|
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~----------~~~~~~P~t~~~l~~~~l~----pn~~Lk~~I~~~   67 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLE----------QNGGTDPFTRQPLSESDLI----PNRALKSAIEEW   67 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHC----------TTSSB-TTT-SB-SGGGSE----E-HHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHH----------cCCCCCCCCCCcCCcccce----ECHHHHHHHHHH
Confidence            36899999999999999999999999999999982          3588999999999887766    889999999988


Q ss_pred             HHH
Q 044708          284 WEK  286 (313)
Q Consensus       284 ~~~  286 (313)
                      ..+
T Consensus        68 ~~~   70 (73)
T PF04564_consen   68 CAE   70 (73)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.08  E-value=2.5e-11  Score=84.76  Aligned_cols=61  Identities=28%  Similarity=0.651  Sum_probs=33.5

Q ss_pred             CCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      +++.+.|++|.+++.+||.+ .|.|+||+.|+...+             +..||+|+.+....+..    .|+.+.+++
T Consensus         4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~-------------~~~CPvC~~Paw~qD~~----~NrqLd~~i   65 (65)
T PF14835_consen    4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI-------------GSECPVCHTPAWIQDIQ----INRQLDSMI   65 (65)
T ss_dssp             HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGT-------------TTB-SSS--B-S-SS--------HHHHHHH
T ss_pred             HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc-------------CCCCCCcCChHHHHHHH----hhhhhhccC
Confidence            45788999999999999975 799999999996654             23599999998877755    777777664

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.06  E-value=7.4e-11  Score=75.83  Aligned_cols=38  Identities=45%  Similarity=1.138  Sum_probs=31.6

Q ss_pred             cccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          209 CPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       209 C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      |+||++.+.+| +.++|||+||..|+.+++.          . ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~----------~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE----------K-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH----------C-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHH----------C-cCCCcCC
Confidence            89999999999 5689999999999999972          2 5789987

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.05  E-value=1.7e-10  Score=102.88  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=58.6

Q ss_pred             cccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHH
Q 044708          196 ELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGC  275 (313)
Q Consensus       196 ~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~  275 (313)
                      .++....+...+.|-||.+.+..|+.++|||+||.-||.+++           +..+.||+||.+......    +-+..
T Consensus        15 ~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-----------~~qp~CP~Cr~~~~esrl----r~~s~   79 (391)
T COG5432          15 KIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHL-----------GTQPFCPVCREDPCESRL----RGSSG   79 (391)
T ss_pred             cCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHh-----------cCCCCCccccccHHhhhc----ccchh
Confidence            334444567789999999999999999999999999999998           778899999998654432    24555


Q ss_pred             HHHHHHHHHHH
Q 044708          276 YINSCREYWEK  286 (313)
Q Consensus       276 l~~l~~~~~~~  286 (313)
                      +..+.+.|...
T Consensus        80 ~~ei~es~~~~   90 (391)
T COG5432          80 SREINESHARN   90 (391)
T ss_pred             HHHHHHhhhhc
Confidence            66666665433

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=9e-11  Score=105.11  Aligned_cols=52  Identities=31%  Similarity=0.724  Sum_probs=45.9

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      +....|.+|++...+|..+||||.||+.||.+|.           .....||.||..++..+.
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~-----------~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWC-----------SEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHH-----------ccccCCCcccccCCCcce
Confidence            4568899999999999999999999999999997           455569999999887764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.1e-10  Score=101.71  Aligned_cols=56  Identities=25%  Similarity=0.623  Sum_probs=47.2

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      ...+.|.||++...+||.+.|||.||+.||.+|+..        ......||+|+..++....+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~--------~~~~~~cPVCK~~Vs~~~vv  100 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT--------RPNSKECPVCKAEVSIDTVV  100 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhh--------cCCCeeCCccccccccceEE
Confidence            357899999999999999999999999999999732        35677899999988766543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.00  E-value=2e-10  Score=77.93  Aligned_cols=47  Identities=40%  Similarity=0.937  Sum_probs=40.1

Q ss_pred             ccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          205 IELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ++..|+||++...+++.+||||. ||..|+.+++           .....||+||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLL-----------KRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH-----------HTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhc-----------ccCCCCCcCChhhc
Confidence            35789999999999999999999 9999999997           46789999999875

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.96  E-value=3.2e-10  Score=100.92  Aligned_cols=49  Identities=27%  Similarity=0.779  Sum_probs=39.9

Q ss_pred             CccCccccccccccCc--------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          204 DIELTCPVCLETVFDP--------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~P--------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .++..|+||++.+.++        +.++|||.||..||.+|.           .....||+||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl-----------~~~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK-----------KEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH-----------hcCCCCCCCCCEeeE
Confidence            3567899999987653        456899999999999997           446689999998763

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=6.8e-10  Score=92.82  Aligned_cols=52  Identities=38%  Similarity=0.932  Sum_probs=43.5

Q ss_pred             CccCccccccccccC--ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          204 DIELTCPVCLETVFD--PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~--Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      +..+.||||++-+..  |+.+.|||.||+.||...+           .....||+|++.+..+..
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al-----------k~~~~CP~C~kkIt~k~~  182 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL-----------KNTNKCPTCRKKITHKQF  182 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHH-----------HhCCCCCCcccccchhhh
Confidence            456899999998875  5668999999999999987           667899999998776553

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.88  E-value=1e-09  Score=71.18  Aligned_cols=40  Identities=48%  Similarity=1.055  Sum_probs=35.2

Q ss_pred             cccccccccCce-EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          209 CPVCLETVFDPV-SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       209 C~IC~~~~~~Pv-~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      |+||++.+.+|+ +++|||+||..|+.+++..         .....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---------~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---------SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---------TSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh---------cCCccCCcC
Confidence            899999999999 7899999999999999831         456779987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.88  E-value=8.1e-10  Score=72.19  Aligned_cols=39  Identities=41%  Similarity=0.952  Sum_probs=22.7

Q ss_pred             cccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCC
Q 044708          209 CPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCP  255 (313)
Q Consensus       209 C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP  255 (313)
                      ||||.+ +.+    |+.|+|||+||..|+.++++.       .....+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~-------~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK-------SDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH--------S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc-------CCCCeeeCc
Confidence            899999 888    999999999999999998731       113567787

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.87  E-value=5.8e-10  Score=73.56  Aligned_cols=40  Identities=38%  Similarity=0.947  Sum_probs=32.4

Q ss_pred             cccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708          208 TCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR  258 (313)
Q Consensus       208 ~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr  258 (313)
                      .|+||++.+.   .++.++|||.||..||.+|+.           ....||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~-----------~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK-----------RNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH-----------HSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH-----------hCCcCCccC
Confidence            5999999884   456689999999999999982           245999997

...

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.77  E-value=3.6e-09  Score=96.56  Aligned_cols=89  Identities=20%  Similarity=0.295  Sum_probs=67.1

Q ss_pred             cCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .+...++|.+|..+|.|+.+++ |.|+||++||..++           .....||.|...+....+......+..++.++
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l-----------~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV   79 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYL-----------EESKYCPTCDIVIHKTHPLLNIRSDRTLQDIV   79 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHH-----------HHhccCCccceeccCccccccCCcchHHHHHH
Confidence            4567889999999999999875 99999999999998           44789999998877665444556677777777


Q ss_pred             HHHHHHHHhHHHHHHHHHHHH
Q 044708          281 REYWEKRLQIERVERVKQAKE  301 (313)
Q Consensus       281 ~~~~~~~~~~e~~e~~~~~ke  301 (313)
                      -.+.......|...+-..+++
T Consensus        80 yKLVPgl~erE~k~~rdFy~~  100 (331)
T KOG2660|consen   80 YKLVPGLQEREMKRRRDFYKS  100 (331)
T ss_pred             HHHcchHHHHHHHHHHHHHHh
Confidence            777555555554444444443

>PHA02926 zinc finger-like protein; Provisional

Probab=98.76  E-value=5.8e-09  Score=90.44  Aligned_cols=57  Identities=26%  Similarity=0.619  Sum_probs=42.1

Q ss_pred             cCCccCccccccccccC---------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          202 RLDIELTCPVCLETVFD---------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~---------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ...++..|+||++...+         ++..+|+|+||..||..|.+.     ....+....||.||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~-----r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT-----RRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh-----ccccCcCCcCCCCcceeee
Confidence            44578999999998654         244589999999999999731     1112345789999998664

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=5.7e-09  Score=95.46  Aligned_cols=68  Identities=34%  Similarity=0.615  Sum_probs=54.7

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      .+.+.+.||||++.+.+|++++|||+||..|+..++.           ....||.||. ...     ....|..+.++++
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~-~~~-----~~~~n~~l~~~~~   71 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP-PSR-----NLRPNVLLANLVE   71 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC-chh-----ccCccHHHHHHHH
Confidence            3568899999999999998899999999999998871           5689999995 222     2237888888888


Q ss_pred             HHHHH
Q 044708          282 EYWEK  286 (313)
Q Consensus       282 ~~~~~  286 (313)
                      .+...
T Consensus        72 ~~~~~   76 (386)
T KOG2177|consen   72 RLRQL   76 (386)
T ss_pred             HHHhc
Confidence            87544

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.71  E-value=1.1e-08  Score=66.82  Aligned_cols=43  Identities=42%  Similarity=1.088  Sum_probs=36.3

Q ss_pred             ccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          208 TCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       208 ~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      .|+||.+.+.+|+.++ |||.||..|+..|+.          .....||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLK----------SGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHH----------hCcCCCCCCCCc
Confidence            4999999998888775 999999999999872          246789999875

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.70  E-value=1.3e-08  Score=67.08  Aligned_cols=41  Identities=37%  Similarity=0.953  Sum_probs=34.0

Q ss_pred             ccccccccc---cCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708          208 TCPVCLETV---FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ  259 (313)
Q Consensus       208 ~C~IC~~~~---~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~  259 (313)
                      .|+||.+.+   ..|+.++|||+||..|+....           .....||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence            489999988   356778999999999997663           56789999985

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.4e-08  Score=95.98  Aligned_cols=54  Identities=33%  Similarity=0.740  Sum_probs=45.9

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +..||||++...-|+.+.|||.||..||..+|...      ...+...||+|+..+..++
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s------~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS------AIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh------cccCCccCCchhhhccccc
Confidence            78899999999999999999999999999998422      2356679999999988755

>smart00184 RING Ring finger

Probab=98.59  E-value=4.2e-08  Score=61.72  Aligned_cols=39  Identities=44%  Similarity=1.146  Sum_probs=33.9

Q ss_pred             cccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          209 CPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       209 C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      |+||++...+++.++|||.||..|+..|+.          .....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK----------SGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHH----------hCcCCCCCC
Confidence            899999999999999999999999999872          245679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=6.9e-09  Score=95.33  Aligned_cols=75  Identities=23%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             cccccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh-hhhhhhhhHH
Q 044708          198 FDSIRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML-FLQIYLINGC  275 (313)
Q Consensus       198 ~~~~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~n~~  275 (313)
                      .+...+..++.||||+++++..++++ |+|.||..||...+          ..+...||.||+.+.... +........+
T Consensus        35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~----------r~gn~ecptcRk~l~SkrsLr~Dp~fdaL  104 (381)
T KOG0311|consen   35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKAL----------RSGNNECPTCRKKLVSKRSLRIDPNFDAL  104 (381)
T ss_pred             ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHH----------HhcCCCCchHHhhccccccCCCCccHHHH
Confidence            34456778999999999999999885 99999999998776          267889999999977554 3323345555


Q ss_pred             HHHHHHH
Q 044708          276 YINSCRE  282 (313)
Q Consensus       276 l~~l~~~  282 (313)
                      +..+.+.
T Consensus       105 is~i~~s  111 (381)
T KOG0311|consen  105 ISKIYPS  111 (381)
T ss_pred             HHHHhcc
Confidence            5555554

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.3e-08  Score=88.74  Aligned_cols=53  Identities=30%  Similarity=0.589  Sum_probs=43.7

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ..++.|+||++....|..++|||.||..||...|-         ....-.||.||+.+....
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t---------~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWT---------KKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHH---------hhccccCchhhhhccchh
Confidence            46899999999999999999999999999987330         133446999999887665

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=8.8e-08  Score=91.39  Aligned_cols=76  Identities=28%  Similarity=0.558  Sum_probs=58.4

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh-hhhhhhhHHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF-LQIYLINGCYINSCR  281 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~-~~~~~~n~~l~~l~~  281 (313)
                      +..++.|.||...+..||++||||+||..||.+..           .....||.||.++..... .+...+|+....++.
T Consensus        81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~l-----------d~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~  149 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSL-----------DQETECPLCRDELVELPALEQALSLNRLLCKLIT  149 (398)
T ss_pred             ccchhhhhhhHhhcCCCccccccccccHHHHHHHh-----------ccCCCCcccccccccchHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999998875           567889999999885432 222224666667777


Q ss_pred             HHHHHHHh
Q 044708          282 EYWEKRLQ  289 (313)
Q Consensus       282 ~~~~~~~~  289 (313)
                      .+......
T Consensus       150 ~F~~~~~~  157 (398)
T KOG4159|consen  150 KFLEGSSS  157 (398)
T ss_pred             Hhhhhhhc
Confidence            66555444

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.46  E-value=4e-07  Score=83.63  Aligned_cols=51  Identities=27%  Similarity=0.543  Sum_probs=38.9

Q ss_pred             ccCcccccccc-ccCce---Ec-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLET-VFDPV---SL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~-~~~Pv---~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ++..||+|... +..|-   .+ +|||.||..|+...|+          .+...||.|+.++....
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~----------~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc----------CCCCCCCCCCCccchhh
Confidence            45689999974 44553   22 6999999999999872          45568999999877655

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.19  E-value=1.9e-06  Score=63.19  Aligned_cols=40  Identities=38%  Similarity=0.897  Sum_probs=31.5

Q ss_pred             ccccccccccCc------------eE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708          208 TCPVCLETVFDP------------VS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR  258 (313)
Q Consensus       208 ~C~IC~~~~~~P------------v~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr  258 (313)
                      .|+||++.+.+|            +. .+|||.|...||.+|+           .....||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL-----------KQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH-----------TTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH-----------hcCCcCCCCC
Confidence            499999998432            33 4799999999999998           4555999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=5.7e-07  Score=90.48  Aligned_cols=65  Identities=29%  Similarity=0.483  Sum_probs=51.5

Q ss_pred             CcccchhcccccccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      +++.+...+.   ....-+.||+|..-+.+.|.+.|||.||..|+.+.+.          .....||.|..++...+.
T Consensus       629 ~d~~L~EElk---~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e----------tRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  629 ADEVLAEELK---EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE----------TRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             ccHHHHHHHH---HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH----------HhcCCCCCCCCCCCcccc
Confidence            3444444333   3457899999999999999999999999999988873          456789999999887764

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.03  E-value=3.5e-06  Score=75.97  Aligned_cols=44  Identities=36%  Similarity=0.894  Sum_probs=38.5

Q ss_pred             cCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708          206 ELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ  259 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~  259 (313)
                      .|.||.|..++.+|+.++ |+|+||..||...+          ....+.||.|..
T Consensus       274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al----------~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTAL----------LDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCcccCccccchHHHHHHhhhh----------hhccccCCCccc
Confidence            389999999999999996 99999999998776          256789999955

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.2e-06  Score=76.50  Aligned_cols=50  Identities=26%  Similarity=0.595  Sum_probs=42.3

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .-.|+||+.....||.++|+|.||.-||....          ......||+||.++...-
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy----------~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSY----------KNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCCcCccccccchhhhhhhcchh----------hcCCCCCceecCCCCcch
Confidence            45799999999999999999999999997664          245567999999987654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.92  E-value=1.1e-05  Score=76.27  Aligned_cols=35  Identities=40%  Similarity=0.871  Sum_probs=31.7

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAA  237 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~  237 (313)
                      +++++.||||..++.+|+.+||+|+.|+.|.....
T Consensus         1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             CcccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            36899999999999999999999999999986554

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=1.3e-05  Score=71.61  Aligned_cols=49  Identities=35%  Similarity=0.751  Sum_probs=41.0

Q ss_pred             ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      .+.+||+|.+....|.+. +|||.||..|+.....         ....+.||.|..++.
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~---------~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRL---------WDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhc---------chhhcccCccCCCCc
Confidence            578899999999999987 5999999999976641         145689999998875

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.88  E-value=2.3e-05  Score=75.75  Aligned_cols=54  Identities=20%  Similarity=0.583  Sum_probs=43.7

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ....|.+|.+.-.+++...|.|.||+.|+.++.     .+.. .+....||+|...++..
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv-----~~f~-~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYV-----ESFM-ENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHH-----Hhhh-cccCCCCcccccccccc
Confidence            467899999999999999999999999998886     2211 24458999998887644

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.88  E-value=4.3e-06  Score=71.26  Aligned_cols=46  Identities=28%  Similarity=0.770  Sum_probs=39.8

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      -+.|.||...+..||.+.|||.||..|..+-+           .....|-+|.+...
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y-----------~kg~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKY-----------QKGDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHh-----------ccCCcceecchhhc
Confidence            46899999999999999999999999987665           56788999987643

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=5.8e-06  Score=83.07  Aligned_cols=48  Identities=33%  Similarity=0.719  Sum_probs=41.5

Q ss_pred             ccCccccccccccC-----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFD-----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~-----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .+..|+||.+.+..     |..++|||.|+..|+..|+           .....||.||..+..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~-----------er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWF-----------ERQQTCPTCRTVLYD  342 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHH-----------HHhCcCCcchhhhhc
Confidence            47899999999998     7889999999999999998           446789999995443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.78  E-value=1.4e-05  Score=55.48  Aligned_cols=43  Identities=33%  Similarity=0.695  Sum_probs=30.2

Q ss_pred             ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC
Q 044708          205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPL  256 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~  256 (313)
                      ..+.|||.+..+.+||.. .|||+|.+..|..+++         ......||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~---------~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQ---------RNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT---------TTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHH---------hcCCCCCCC
Confidence            578999999999999985 7999999999998861         256788998

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2.1e-05  Score=71.11  Aligned_cols=46  Identities=33%  Similarity=0.830  Sum_probs=39.3

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      -+-|-||...+.+||.+.|||.||..|....+           .....|++|.+.+.
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~-----------qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPY-----------QKGEKCYVCSQQTH  286 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccc-----------ccCCcceecccccc
Confidence            35699999999999999999999999986654           55689999988754

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2.2e-05  Score=72.87  Aligned_cols=50  Identities=32%  Similarity=0.851  Sum_probs=40.8

Q ss_pred             CccCccccccccc-cC------------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          204 DIELTCPVCLETV-FD------------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       204 ~~~l~C~IC~~~~-~~------------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ..+-.|.||++-+ ..            |..+||||.+-..|+..|.           .....||.||.++..+
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~-----------ERqQTCPICr~p~ifd  347 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL-----------ERQQTCPICRRPVIFD  347 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH-----------HhccCCCcccCccccc
Confidence            3678999999874 32            3679999999999999998           5567899999996543

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.9e-05  Score=70.39  Aligned_cols=49  Identities=24%  Similarity=0.513  Sum_probs=40.3

Q ss_pred             ccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ....|.||+..+..   -+.+||.|.|-..|+..|+          ......||+||.+++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~----------~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL----------LGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHH----------hhhcccCCccCCCCCC
Confidence            45789999987752   3458999999999999998          2567899999998763

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.61  E-value=2.6e-05  Score=75.12  Aligned_cols=52  Identities=40%  Similarity=0.890  Sum_probs=44.9

Q ss_pred             CCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          203 LDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +++++.|++|..++.+|+.+ .|||.||..|+..|.           .....||.|+.......
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~-----------~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESL-----------SNHQKCPVCRQELTQAE   70 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhh-----------ccCcCCcccccccchhh
Confidence            67889999999999999995 999999999998886           34789999988876554

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=1.9e-05  Score=53.27  Aligned_cols=47  Identities=32%  Similarity=0.771  Sum_probs=38.4

Q ss_pred             cCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          206 ELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      +-.|.||.+-..+.|...|||. .|..|-.+.+.          .....||+||.++.
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~----------~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKK----------ALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHHHH----------ccCCcCcchhhHHH
Confidence            3579999998888888899995 79999877762          46778999999864

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=6.3e-05  Score=70.43  Aligned_cols=48  Identities=27%  Similarity=0.505  Sum_probs=38.4

Q ss_pred             CccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          207 LTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       207 l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+|.||+|.+..-   +.|||+|.|=..||..|+          ......||+|+..+...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL----------~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWL----------TQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhH----------hhcCccCCCCCCcCCCC
Confidence            4899999988743   357999999999999998          23456799999876543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.35  E-value=0.00024  Score=53.07  Aligned_cols=37  Identities=30%  Similarity=0.674  Sum_probs=28.2

Q ss_pred             ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          219 PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       219 Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      |+.+ .|+|.|-..||.+|++.        ++....||.||++...
T Consensus        46 plv~g~C~H~FH~hCI~kWl~~--------~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   46 PLVWGKCSHNFHMHCILKWLST--------QSSKGQCPMCRQPWKF   83 (85)
T ss_pred             ceeeccCccHHHHHHHHHHHcc--------ccCCCCCCCcCCeeee
Confidence            5544 69999999999999831        1335699999998654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=97.32  E-value=0.00082  Score=68.86  Aligned_cols=51  Identities=25%  Similarity=0.546  Sum_probs=40.6

Q ss_pred             CccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       207 l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      ..|++|.+ ...++.++|||.||..|+...+.     .    .....||.||..+......
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~-----~----~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQ-----Q----SENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccc-----c----ccCCCCcHHHHHHHHHHHh
Confidence            78999999 88888899999999999987762     1    2334899999887665543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00016  Score=68.06  Aligned_cols=57  Identities=26%  Similarity=0.624  Sum_probs=42.8

Q ss_pred             CccCccccccccccCce-----E---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          204 DIELTCPVCLETVFDPV-----S---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv-----~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ..+..|.||++...++.     .   .+|.|.||..|+..|..+...    .......||.||......
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCccccc
Confidence            35788999999988877     3   469999999999999632211    123468999999886543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00017  Score=67.06  Aligned_cols=47  Identities=38%  Similarity=0.776  Sum_probs=39.9

Q ss_pred             ccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          205 IELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ....|-||+.-.+|-+.+||-|. .|..|.....           -....||+||+++.
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-----------~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-----------YQTNNCPICRQPIE  336 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-----------HhhcCCCccccchH
Confidence            46789999999999999999996 7999987664           34668999999875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.19  E-value=0.00016  Score=68.94  Aligned_cols=48  Identities=31%  Similarity=0.626  Sum_probs=39.0

Q ss_pred             cCCccCccccccccccCce----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          202 RLDIELTCPVCLETVFDPV----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      .+.+.-+||||++-+..-+    ++.|.|+|=..|+..|+             ...||+||-..+
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-------------~~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-------------DSSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc-------------cCcChhhhhhcC
Confidence            4557789999999887665    45799999999999997             457999987655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0023  Score=60.47  Aligned_cols=54  Identities=28%  Similarity=0.613  Sum_probs=42.9

Q ss_pred             ccCccccccccccCce-----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          205 IELTCPVCLETVFDPV-----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv-----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      ...+||||++-+.-|+     .+.|||.|-..||++|+.         ......||.|......+...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~---------k~~~~~cp~c~~katkr~i~   61 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG---------KKTKMQCPLCSGKATKRQIR   61 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh---------hhhhhhCcccCChhHHHHHH
Confidence            4578999999988763     457999999999999971         24567899998887766644

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.64  E-value=0.0006  Score=64.09  Aligned_cols=50  Identities=30%  Similarity=0.616  Sum_probs=40.0

Q ss_pred             ccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          208 TCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       208 ~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      .|.||-+.=.|-..-||||..|..|+..|..         ...+..||.||..+.-...
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~---------sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQD---------SDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcc---------cCCCCCCCceeeEeccccc
Confidence            5999999888876779999999999988851         1347789999988765543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.57  E-value=0.0034  Score=57.32  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             CccCccccccccccCc---eEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708          204 DIELTCPVCLETVFDP---VSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS  279 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~P---v~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l  279 (313)
                      ...+.|||....|..-   |.+ +|||+|+..++.+.            .....||+|..++...+.+.+.+...-+..+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~------------k~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l  178 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL------------KKSKKCPVCGKPFTEEDIIPLNPPEEELEKL  178 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh------------cccccccccCCccccCCEEEecCCccHHHHH
Confidence            4678999999888532   333 89999999999764            1245699999999987766555554445444


Q ss_pred             HHHH
Q 044708          280 CREY  283 (313)
Q Consensus       280 ~~~~  283 (313)
                      .+.+
T Consensus       179 ~~~~  182 (260)
T PF04641_consen  179 RERM  182 (260)
T ss_pred             HHHH
Confidence            4444

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0013  Score=60.94  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=42.4

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .++-.||||.--....|..||+|.-|..||.+++           .+...|-.|...+..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl-----------mN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL-----------MNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHH-----------hcCCeeeEecceeee
Confidence            4678899999877788889999999999999997           778899999887653

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.0015  Score=57.87  Aligned_cols=53  Identities=17%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             ccCccccccccccCceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhh
Q 044708          205 IELTCPVCLETVFDPVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ  268 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~  268 (313)
                      ..+.||||.+.+.+.+.    -||||.||..|++..+           .....||+|..++..++.+.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkli-----------r~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLI-----------RKDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhc-----------cccccccCCCCcCcccceEe
Confidence            56889999999987543    3899999999999987           66788999999988777543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0017  Score=62.64  Aligned_cols=50  Identities=20%  Similarity=0.485  Sum_probs=38.2

Q ss_pred             CCccCcccccccccc-----------------CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          203 LDIELTCPVCLETVF-----------------DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~-----------------~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      .+...-|+||+..+.                 +-+.+||.|.|-..|+.+|+.          .....||+||.+++
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd----------~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD----------TYKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh----------hhcccCCccCCCCC
Confidence            345667999997643                 123459999999999999982          35568999999875

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.00068  Score=61.35  Aligned_cols=42  Identities=38%  Similarity=0.937  Sum_probs=34.7

Q ss_pred             cCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          206 ELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ...|.||++...|.+.|+|||. -|..|-               .....||+||+.+.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CG---------------krm~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCG---------------KRMNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhc---------------cccccCchHHHHHH
Confidence            6779999999999999999995 588885               23348999998654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.20  E-value=0.0019  Score=46.84  Aligned_cols=59  Identities=20%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             cCcccccccccc-C---ceEc----ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          206 ELTCPVCLETVF-D---PVSL----TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       206 ~l~C~IC~~~~~-~---Pv~l----~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      +..|+||...+. +   |+..    .|+..|=..||.+|+.........-......||.|+.+++..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            567999998754 2   3332    588899999999998432111100011224699999987653

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.0027  Score=59.25  Aligned_cols=45  Identities=33%  Similarity=0.787  Sum_probs=34.8

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ...-|.||.+-..+.+.+||||.-|  |..-.            .....||+||..+..
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs------------~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS------------KHLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--chHHH------------hhCCCCchhHHHHHH
Confidence            4556999999999999999999876  65433            334569999987653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.017  Score=52.52  Aligned_cols=48  Identities=29%  Similarity=0.558  Sum_probs=37.0

Q ss_pred             ccccccc-cccCceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          208 TCPVCLE-TVFDPVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       208 ~C~IC~~-~~~~Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .||+|.. .+.+|-.    -+|||+.|-+|+.+.++          .++..||.|...+....
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~----------~g~~~CpeC~~iLRk~n   54 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS----------LGPAQCPECMVILRKNN   54 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHh----------cCCCCCCcccchhhhcc
Confidence            4999974 4666632    27999999999999883          67889999987765443

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.011  Score=54.88  Aligned_cols=68  Identities=25%  Similarity=0.506  Sum_probs=46.6

Q ss_pred             cCcccccccccc------CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh-hhhhhhhhHHHHH
Q 044708          206 ELTCPVCLETVF------DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML-FLQIYLINGCYIN  278 (313)
Q Consensus       206 ~l~C~IC~~~~~------~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~n~~l~~  278 (313)
                      .+.|-||.+.+.      .|..+.|||++|..|+....          ......||.||.+..... .+..+..|..+..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~----------~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~   72 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL----------GNSRILCPFCRETTEIPDGDVKSLQKNFALLQ   72 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHh----------cCceeeccCCCCcccCCchhHhhhhhhHHHHH
Confidence            356888887654      57778899999999998775          255678899999953322 3334455555555


Q ss_pred             HHHHH
Q 044708          279 SCREY  283 (313)
Q Consensus       279 l~~~~  283 (313)
                      .+...
T Consensus        73 ~~~~~   77 (296)
T KOG4185|consen   73 AIEHM   77 (296)
T ss_pred             HHHHH
Confidence            54443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.93  E-value=0.0034  Score=42.80  Aligned_cols=48  Identities=27%  Similarity=0.570  Sum_probs=37.2

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ....|-.|...-...+.+||||..|..|...             ..-..||.|..++...+
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-------------~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG-------------ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccCh-------------hhccCCCCCCCcccCCC
Confidence            4566888888878888999999999999732             23457999999876543

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.87  E-value=0.0077  Score=40.08  Aligned_cols=43  Identities=30%  Similarity=0.793  Sum_probs=20.6

Q ss_pred             ccccccccc--CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708          209 CPVCLETVF--DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS  261 (313)
Q Consensus       209 C~IC~~~~~--~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~  261 (313)
                      ||+|.+.+.  +--..  +||+.+|+.|..+..          ......||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~----------~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL----------ENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHT----------TSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHH----------hccCCCCCCCCCCC
Confidence            788888762  22233  599999999998775          13578999999874

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.85  E-value=0.0017  Score=65.80  Aligned_cols=49  Identities=27%  Similarity=0.531  Sum_probs=39.1

Q ss_pred             ccCccccccccccCceE---cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          205 IELTCPVCLETVFDPVS---LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ..-.||+|+..+.+-..   .+|+|.||..|+..|-           .....||+||..+...
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs-----------R~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS-----------RCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh-----------hhcccCchhhhhhhee
Confidence            45679999988776543   3799999999999885           5677899999886543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.0093  Score=55.01  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=41.6

Q ss_pred             CccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          204 DIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .+.-.||||+....+|..+. -|-.||..|+-.+.           ..-..||+-..+.....
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv-----------~~~~~CPVT~~p~~v~~  349 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV-----------VNYGHCPVTGYPASVDH  349 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHH-----------HhcCCCCccCCcchHHH
Confidence            45678999999999998875 69999999999987           55678998777665444

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.034  Score=52.88  Aligned_cols=54  Identities=28%  Similarity=0.549  Sum_probs=37.8

Q ss_pred             ccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCc
Q 044708          205 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS  261 (313)
Q Consensus       205 ~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~  261 (313)
                      ..+.|.||.+...-   =+.+||+|.||+.|+..++......+   ......||.+.-+-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg---~v~~l~Cp~~~C~~  239 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEG---QVSCLKCPDPKCGS  239 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcc---eeeeecCCCCCCcc
Confidence            46789999987543   23579999999999999985433332   24567888665443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.38  E-value=0.02  Score=47.67  Aligned_cols=21  Identities=38%  Similarity=0.961  Sum_probs=17.8

Q ss_pred             ccCccccccccccCceEcccC
Q 044708          205 IELTCPVCLETVFDPVSLTCG  225 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~Cg  225 (313)
                      ++.+||||++...+.|.|-|.
T Consensus         1 ed~~CpICme~PHNAVLLlCS   21 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCS   21 (162)
T ss_pred             CCccCceeccCCCceEEEEec
Confidence            467899999999999988553

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.0053  Score=55.09  Aligned_cols=52  Identities=19%  Similarity=0.546  Sum_probs=40.1

Q ss_pred             ccCccccccccccCc----------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVFDP----------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~P----------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ++-.|.||..-+...          ..|+|+|+|=-.||..|.-         -+....||.|++.+....
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci---------vGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI---------VGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee---------ecCCCCCchHHHHhhHhh
Confidence            567799999876543          4689999999999988861         145678999988876554

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.28  E-value=0.037  Score=49.17  Aligned_cols=44  Identities=27%  Similarity=0.801  Sum_probs=30.2

Q ss_pred             Cccccccccc-cCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          207 LTCPVCLETV-FDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       207 l~C~IC~~~~-~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .-|-.|...- .+|.. +.|+|+||..|....             ....||.|++++..
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-------------~~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-------------SPDVCPLCKKSIRI   49 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccC-------------Cccccccccceeee
Confidence            3476666432 45555 479999999998432             23389999998653

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.018  Score=57.55  Aligned_cols=35  Identities=37%  Similarity=0.831  Sum_probs=29.0

Q ss_pred             CCccCcccccccccc----CceEcccCCcchHHHHHHhh
Q 044708          203 LDIELTCPVCLETVF----DPVSLTCGHILCKMCACSAA  237 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~----~Pv~l~CgH~FC~~Cl~~~~  237 (313)
                      +.+-+.|+||+..|.    .||.+-|||+.|+.|+....
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly   46 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY   46 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh
Confidence            345678999987764    79999999999999997664

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.61  E-value=0.035  Score=40.68  Aligned_cols=48  Identities=33%  Similarity=0.544  Sum_probs=34.7

Q ss_pred             Ccccccccccc----CceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          207 LTCPVCLETVF----DPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       207 l~C~IC~~~~~----~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      -.||-|+.-..    -|+.- .|.|.|=..||.+|+           .....||++|++.+..+
T Consensus        32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL-----------~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL-----------DTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHH-----------hhCCCCCCCCceeEEec
Confidence            35666665332    13444 599999999999998           45778999999876543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=94.53  E-value=0.047  Score=50.69  Aligned_cols=46  Identities=33%  Similarity=0.681  Sum_probs=37.4

Q ss_pred             CCccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          203 LDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ..+-+.||||.+.+..|+. -+=||.-|..|-.+              -...||.||.++.
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~--------------~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK--------------VSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh--------------hcccCCccccccc
Confidence            3467889999999999974 35689999999743              3568999999987

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=0.023  Score=53.63  Aligned_cols=47  Identities=26%  Similarity=0.656  Sum_probs=32.0

Q ss_pred             cCccccccccccCceE---c-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          206 ELTCPVCLETVFDPVS---L-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~---l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      ...|.||.+.+-.-.-   + .|||+|-..|+..|+.     +-+   ....||.|+-.
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe-----~~P---s~R~cpic~ik   54 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFE-----GDP---SNRGCPICQIK   54 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHc-----cCC---ccCCCCceeec
Confidence            3469999765543222   3 4999999999999982     211   12589999833

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.03  Score=53.07  Aligned_cols=55  Identities=27%  Similarity=0.488  Sum_probs=38.8

Q ss_pred             CCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          203 LDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ...-+.|||=.+--.   .|+.+.|||+.|+.-+.+..        ++....+.||.|-......+
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS--------~ng~~sfKCPYCP~e~~~~~  388 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLS--------KNGSQSFKCPYCPVEQLASD  388 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHh--------hCCCeeeeCCCCCcccCHHh
Confidence            445678999665433   58899999999999998774        11123599999966554433

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.33  E-value=0.033  Score=51.79  Aligned_cols=49  Identities=27%  Similarity=0.714  Sum_probs=39.5

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      .++...|-||-+-++-...+||+|..|.-|..+..+         -.....||.||..
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRA---------LY~~K~C~~CrTE  106 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRA---------LYMQKGCPLCRTE  106 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchHHHHHHHHHHH---------HHhccCCCccccc
Confidence            456788999999888777899999999999866542         1456789999976

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.32  E-value=0.033  Score=44.91  Aligned_cols=52  Identities=23%  Similarity=0.531  Sum_probs=41.8

Q ss_pred             cCccccccccccCceEc-c---cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          206 ELTCPVCLETVFDPVSL-T---CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l-~---CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      -.+|.||.+...+...| |   ||-+.|..|-...|.        ....-+.||+|+..+....
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK--------~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWK--------FCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHH--------HcccCCCCCcccccccccc
Confidence            56899999999999887 3   999999999887772        1245689999998876543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=94.30  E-value=0.062  Score=36.01  Aligned_cols=42  Identities=19%  Similarity=0.556  Sum_probs=31.3

Q ss_pred             ccccccc--cccCceEcccC-----CcchHHHHHHhhhhhhhccccCCCCCCCCCCCc
Q 044708          208 TCPVCLE--TVFDPVSLTCG-----HILCKMCACSAASVSIVDGLKLADPREKCPLCR  258 (313)
Q Consensus       208 ~C~IC~~--~~~~Pv~l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr  258 (313)
                      .|.||++  .-.+|...||.     |.+=..|+.+|+..         .....||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~---------~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE---------SGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH---------cCCCcCCCCC
Confidence            4889997  45577778985     66889999999831         3345899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.26  E-value=0.026  Score=52.32  Aligned_cols=51  Identities=25%  Similarity=0.661  Sum_probs=35.0

Q ss_pred             CccCcccccccccc--CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          204 DIELTCPVCLETVF--DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       204 ~~~l~C~IC~~~~~--~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +++. ||+|.+.+.  |--..  +||-..|+-|.....          ..-..+||.||.......
T Consensus        13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~ir----------q~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR----------QNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccc-CcccccccccccCCcccCCcccHHHHHHHHHHH----------hhccCCChHhhhhccccc
Confidence            3444 999998754  33333  689888999975543          134568999998866544

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.057  Score=52.05  Aligned_cols=58  Identities=26%  Similarity=0.496  Sum_probs=37.9

Q ss_pred             ccCcccccc-ccccCce---EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCC--CCcCCccchhhh
Q 044708          205 IELTCPVCL-ETVFDPV---SLTCGHILCKMCACSAASVSIVDGLKLADPREKCP--LCRQASVFMLFL  267 (313)
Q Consensus       205 ~~l~C~IC~-~~~~~Pv---~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~~~  267 (313)
                      ...+|.||. +......   +..|+|.||..|+.+++.+.     ........||  .|...++.....
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~-----~~~~~~~~C~~~~C~~~l~~~~c~  208 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK-----LLSGTVIRCPHDGCESRLTLESCR  208 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh-----hccCCCccCCCCCCCccCCHHHHh
Confidence            367899999 4433212   34699999999999997432     2235677887  455555555543

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.10  E-value=0.022  Score=59.28  Aligned_cols=51  Identities=24%  Similarity=0.539  Sum_probs=39.0

Q ss_pred             CCccCcccccccccc-----CceE--cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          203 LDIELTCPVCLETVF-----DPVS--LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~-----~Pv~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      +.....|+||..++.     -|-.  -.|.|-|-..|+..|++         .++...||.||..++
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~---------Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFA---------SSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHH---------hcCCCCCCccccccc
Confidence            445567999998875     2322  35999999999999984         266789999998765

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=93.29  E-value=0.018  Score=58.47  Aligned_cols=55  Identities=31%  Similarity=0.665  Sum_probs=43.2

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +...+.||||...+.+|+.+.|-|.||..|+...+     ..   ......||+|+..+....
T Consensus        18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f-----~~---~~~~~~~~lc~~~~eK~s   72 (684)
T KOG4362|consen   18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLF-----ES---KKGPKQCALCKSDIEKRS   72 (684)
T ss_pred             HhhhccCCceeEEeeccchhhhhHHHHhhhhhcee-----ec---cCccccchhhhhhhhhhh
Confidence            45688999999999999999999999999986654     11   133778999986655443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.22  E-value=0.26  Score=44.00  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhh
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAA  237 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~  237 (313)
                      +--.|++|+....+||.++=||.||+.||.+++
T Consensus        42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i   74 (303)
T KOG3039|consen   42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI   74 (303)
T ss_pred             CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence            445689999999999999999999999998886

>PHA03096 p28-like protein; Provisional

Probab=93.07  E-value=0.055  Score=49.90  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=24.4

Q ss_pred             CccccccccccC-ce------Ec-ccCCcchHHHHHHhhh
Q 044708          207 LTCPVCLETVFD-PV------SL-TCGHILCKMCACSAAS  238 (313)
Q Consensus       207 l~C~IC~~~~~~-Pv------~l-~CgH~FC~~Cl~~~~~  238 (313)
                      -.|.||++.... |+      +| .|.|.||..|+..|..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~  218 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT  218 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence            579999987542 21      23 5999999999999973

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=92.76  E-value=0.053  Score=48.00  Aligned_cols=46  Identities=30%  Similarity=0.701  Sum_probs=34.7

Q ss_pred             ccCccccccc-cccCceE--c--c-cCCcchHHHHHHhhhhhhhccccCCCCCCCCC--CCcCC
Q 044708          205 IELTCPVCLE-TVFDPVS--L--T-CGHILCKMCACSAASVSIVDGLKLADPREKCP--LCRQA  260 (313)
Q Consensus       205 ~~l~C~IC~~-~~~~Pv~--l--~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP--~Cr~~  260 (313)
                      ++-.||||.. .+-+|-+  +  | |-|..|-+|+.+.++          .++..||  -|.+-
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs----------~GpAqCP~~gC~kI   62 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS----------RGPAQCPYKGCGKI   62 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc----------CCCCCCCCccHHHH
Confidence            4668999985 4455532  2  5 999999999999983          6788999  77543

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.63  E-value=0.11  Score=37.82  Aligned_cols=49  Identities=29%  Similarity=0.571  Sum_probs=32.5

Q ss_pred             CccccccccccC-ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          207 LTCPVCLETVFD-PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       207 l~C~IC~~~~~~-Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      -.||-|.-.=.+ |..+ -|.|.|=..||.+|...        ......||.||+..+.
T Consensus        32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~--------~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNT--------PTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcC--------ccccccCCcchheeEe
Confidence            344544433222 5544 49999999999999732        2445789999987653

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=90.57  E-value=0.1  Score=40.37  Aligned_cols=32  Identities=25%  Similarity=0.592  Sum_probs=26.1

Q ss_pred             CCccCccccccccccCceE--cccCCcchHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVS--LTCGHILCKMCAC  234 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~--l~CgH~FC~~Cl~  234 (313)
                      +.++-.|++|...+..++.  .||||.|...|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            4467789999999887664  4999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.11  E-value=0.14  Score=45.02  Aligned_cols=40  Identities=33%  Similarity=0.798  Sum_probs=31.1

Q ss_pred             cccccccccCceEcccCC-cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          209 CPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       209 C~IC~~~~~~Pv~l~CgH-~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      |-.|.+--..-+.+||.| .+|..|-               .+...||+|+.+...
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~---------------~~~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICD---------------ESLRICPICRSPKTS  201 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccc---------------ccCccCCCCcChhhc
Confidence            999998777766689998 6899995               225679999887543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.00  E-value=0.12  Score=47.45  Aligned_cols=43  Identities=30%  Similarity=0.627  Sum_probs=29.2

Q ss_pred             ccccccccccC-ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          208 TCPVCLETVFD-PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       208 ~C~IC~~~~~~-Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .|.-|.--+.. -.++||.|.||..|...             ...+.||.|-..+..
T Consensus        92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~-------------~~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   92 FCDRCDFPIAIYGRMIPCKHVFCLECARS-------------DSDKICPLCDDRVQR  135 (389)
T ss_pred             eecccCCcceeeecccccchhhhhhhhhc-------------CccccCcCcccHHHH
Confidence            46667643332 23579999999999742             235789999776653

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.44  E-value=0.46  Score=31.90  Aligned_cols=48  Identities=29%  Similarity=0.635  Sum_probs=22.8

Q ss_pred             cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      .+.|||....+..|+.. .|.|.-|-+ +..++...    .  ......||.|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~----~--~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESN----Q--RTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHH----H--HS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHh----h--ccCCeECcCCcCc
Confidence            47899999999999985 699986643 22333110    0  1345899999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.19  E-value=0.17  Score=48.02  Aligned_cols=46  Identities=30%  Similarity=0.647  Sum_probs=36.0

Q ss_pred             ccCcccccccccc-Cce---EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708          205 IELTCPVCLETVF-DPV---SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ  259 (313)
Q Consensus       205 ~~l~C~IC~~~~~-~Pv---~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~  259 (313)
                      -++.|..|.+.+- .|-   .+||.|+|=.+|+.+++.         ......||.||+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~---------~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE---------NNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH---------hCCCCCCccHHH
Confidence            4688999999864 222   369999999999988862         256789999994

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.05  E-value=0.31  Score=44.98  Aligned_cols=59  Identities=27%  Similarity=0.470  Sum_probs=41.4

Q ss_pred             cccccCCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          198 FDSIRLDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       198 ~~~~~~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ++...+..-++||+=.+.-+   .|+++.|||..-..-+.+.-        +.....+.||.|-......
T Consensus       328 p~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS--------~nG~~~FKCPYCP~~~~~~  389 (396)
T COG5109         328 PKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLS--------QNGVLSFKCPYCPEMSKYE  389 (396)
T ss_pred             CCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHh--------hcCcEEeeCCCCCcchhhh
Confidence            34445677899998666543   58999999999988876552        2224579999996654433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.76  E-value=0.71  Score=47.97  Aligned_cols=42  Identities=31%  Similarity=0.653  Sum_probs=35.4

Q ss_pred             ccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          205 IELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      ..-.|..|...+.-|++ ..|||+|=..|+.              .+...||.|+..
T Consensus       839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e--------------~~~~~CP~C~~e  881 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE--------------DKEDKCPKCLPE  881 (933)
T ss_pred             eeeeecccCCccccceeeeecccHHHHHhhc--------------cCcccCCccchh
Confidence            44689999999999976 5899999999994              456899999763

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.70  E-value=0.87  Score=40.14  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=40.1

Q ss_pred             cCcccccccccc--CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          206 ELTCPVCLETVF--DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       206 ~l~C~IC~~~~~--~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .-.|.+|...+.  +.+.|.|-|.|=+.|+.++.+...   ......+..||.|..++-..
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lP---anTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLP---ANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCC---CcCCCCcccCCCCCCccCCC
Confidence            446999988765  567789999999999998863211   11124567899999887543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=87.06  E-value=0.13  Score=55.32  Aligned_cols=48  Identities=25%  Similarity=0.611  Sum_probs=38.9

Q ss_pred             cCCccCcccccccccc-CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCC
Q 044708          202 RLDIELTCPVCLETVF-DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA  260 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~-~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~  260 (313)
                      ++-....|+||++.+. .-....|||.+|..|...|.           .....||.|...
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l-----------~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWL-----------YASSRCPICKSI 1197 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHH-----------HHhccCcchhhh
Confidence            3456679999999998 55567899999999999987           556789999643

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.07  E-value=0.68  Score=35.75  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=24.8

Q ss_pred             ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          223 TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       223 ~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      .|.|.|=..||.+|+           .....||+|.++-.
T Consensus        80 ~CNHaFH~hCisrWl-----------ktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWL-----------KTRNVCPLDNKEWV  108 (114)
T ss_pred             ecchHHHHHHHHHHH-----------hhcCcCCCcCccee
Confidence            599999999999998           66779999987643

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=83.95  E-value=0.083  Score=37.98  Aligned_cols=42  Identities=31%  Similarity=0.582  Sum_probs=22.9

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ++.||.|...+..    .=||-+|..|-..+            .....||.|..++..
T Consensus         1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~------------~~~a~CPdC~~~Le~   42 (70)
T PF07191_consen    1 ENTCPKCQQELEW----QGGHYHCEACQKDY------------KKEAFCPDCGQPLEV   42 (70)
T ss_dssp             --B-SSS-SBEEE----ETTEEEETTT--EE------------EEEEE-TTT-SB-EE
T ss_pred             CCcCCCCCCccEE----eCCEEECccccccc------------eecccCCCcccHHHH
Confidence            3679999876432    12788899997554            345689999888653

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.87  E-value=0.54  Score=31.05  Aligned_cols=35  Identities=23%  Similarity=0.631  Sum_probs=22.8

Q ss_pred             CceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          218 DPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       218 ~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      +--.+.|. |-.|..|+...+           +.+..||+|..+++.
T Consensus        12 ~k~Li~C~dHYLCl~CLt~ml-----------~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   12 NKGLIKCSDHYLCLNCLTLML-----------SRSDRCPICGKPLPT   47 (50)
T ss_dssp             -SSEEE-SS-EEEHHHHHHT------------SSSSEETTTTEE---
T ss_pred             CCCeeeecchhHHHHHHHHHh-----------ccccCCCcccCcCcc
Confidence            33445777 778999998876           678899999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.98  E-value=0.72  Score=42.04  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=28.8

Q ss_pred             ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708          205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS  238 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~  238 (313)
                      .-|.|.+|.+-+.|-....|    .|-||..|-.+.+.
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK  304 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK  304 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence            45899999999999887766    69999999887763

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.78  E-value=2.2  Score=38.38  Aligned_cols=51  Identities=16%  Similarity=0.227  Sum_probs=38.2

Q ss_pred             ccCccccccccccCce----EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhh
Q 044708          205 IELTCPVCLETVFDPV----SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQ  268 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv----~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~  268 (313)
                      ..++|||-.-.+..-.    ..+|||.|-..-+.+.             ....|++|..++...+.+.
T Consensus       110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-------------kas~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-------------KASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             ceeecccccceecceEEEEEEeccceeccHHHHHHh-------------hhccccccCCcccccCeEe
Confidence            4688999876665443    3489999998887654             3568999999998877543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=82.60  E-value=0.94  Score=43.11  Aligned_cols=41  Identities=17%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             cCCcchHHHHHHhhhhhhhccccC--CCCCCCCCCCcCCccch
Q 044708          224 CGHILCKMCACSAASVSIVDGLKL--ADPREKCPLCRQASVFM  264 (313)
Q Consensus       224 CgH~FC~~Cl~~~~~~~~~~~~~~--~~~~~~CP~Cr~~~~~~  264 (313)
                      |....|..|+.+|++....+..+.  .++...||+||+.+-..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil  353 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL  353 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence            555679999999994332111110  14668999999986543

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.57  E-value=1.8  Score=42.69  Aligned_cols=34  Identities=26%  Similarity=0.652  Sum_probs=28.8

Q ss_pred             ccCccccccccccC-ceEcccCCcchHHHHHHhhh
Q 044708          205 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAAS  238 (313)
Q Consensus       205 ~~l~C~IC~~~~~~-Pv~l~CgH~FC~~Cl~~~~~  238 (313)
                      ....|.||.+.+.. .+.+.|||.||..|...++.
T Consensus        69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~  103 (444)
T KOG1815|consen   69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG  103 (444)
T ss_pred             ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence            56789999998875 55678999999999998874

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=80.51  E-value=1.7  Score=39.92  Aligned_cols=43  Identities=35%  Similarity=0.841  Sum_probs=33.0

Q ss_pred             cCcccccccccc----CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708          206 ELTCPVCLETVF----DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ  259 (313)
Q Consensus       206 ~l~C~IC~~~~~----~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~  259 (313)
                      ...||||.+.+.    .|..++|||..=..|+....           -....||+|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~-----------~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMI-----------CEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHh-----------ccCCCCCcccc
Confidence            344999998754    56668999988888987765           23389999977

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
2egp_A	79	Solution Structure Of The Ring-Finger Domain From H		2e-05
2ecv_A	85	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-04
1jm7_A	112	Solution Structure Of The Brca1/bard1 Ring-domain H		3e-04
2ecw_A	85	Solution Structure Of The Zinc Finger, C3hc4 Type (		5e-04

>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human Tripartite Motif Protein 34 Length = 79

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
           E+TCP+CLE + +P+SL CGH LC+ C     +VS  + +     +  CP+C
Sbjct: 12  EVTCPICLELLTEPLSLDCGHSLCRAC----ITVSNKEAVTSMGGKSSCPVC 59

>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Tripartite Motif-Containing Protein 5 Length = 85

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
           E+TCP+CLE +  P+SL CGH  C+ C  +    S++D  +       CP+CR
Sbjct: 19  EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGE-----SSCPVCR 66

>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 14/55 (25%)
Query: 207 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE---KCPLCR 258
           L CP+CLE + +PVS  C HI CK C            LKL + ++   +CPLC+
Sbjct: 22  LECPICLELIKEPVSTKCDHIFCKFCM-----------LKLLNQKKGPSQCPLCK 65

>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Tripartite Motif Protein 30 Length = 85

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
           E+TCP+CLE + +PVS  C H  C+ C       +     +  D +  CP+CR
Sbjct: 19  EVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCR 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-10
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	8e-10
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	8e-10
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-09
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-08
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	2e-08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-08
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	9e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	7e-05
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-04
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	8e-04
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-04

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           E+ CP+CL+ +  PV++ CGH  C  C        I    + +    KCPLC+ + 
Sbjct: 20  EVICPICLDILQKPVTIDCGHNFCLKC--------ITQIGETSCGFFKCPLCKTSV 67

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 53.7 bits (129), Expect = 6e-10
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
              C +CL+T   PVSL C H+ C +C   A           +   ++C LCRQ
Sbjct: 15  VPECAICLQTCVHPVSLPCKHVFCYLCVKGA-----------SWLGKRCALCRQ 57

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           E+TCP+CLE + +PVS  C H  C+ C          +  +  D +  CP+CR   
Sbjct: 19  EVTCPICLELLKEPVSADCNHSFCRACITLNY-----ESNRNTDGKGNCPVCRVPY 69

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
            L CP+CLE + +PVS  C HI CK C        ++  L       +CPLC+   
Sbjct: 21  ILECPICLELIKEPVSTKCDHIFCKFC--------MLKLLNQKKGPSQCPLCKNDI 68

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           E+TCP+CLE + +P+SL CGH LC+ C       S  + +     +  CP+C  + 
Sbjct: 12  EVTCPICLELLTEPLSLDCGHSLCRACITV----SNKEAVTSMGGKSSCPVCGISY 63

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           E  C +C+E + +PV+L C H LCK C            ++ A     CP CR+
Sbjct: 15  ECQCGICMEILVEPVTLPCNHTLCKPC--------FQSTVEKASL--CCPFCRR 58

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           E+TCP+CLE +  P+SL CGH  C+ C  +    S++D  +       CP+CR + 
Sbjct: 19  EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGES-----SCPVCRISY 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 8e-09
 Identities = 49/303 (16%), Positives = 91/303 (30%), Gaps = 88/303 (29%)

Query: 41  KDPESNSNADGVAQIKITSCHNRCPVCDGAFFPTLVNDMSAVVRYFNKRAKKLINLHQAA 100
           + P   +              +R           L ND     +Y   R +  + L QA 
Sbjct: 103 RQPSMMT-------RMYIEQRDR-----------LYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 101 -GLKKY-FLWIKGKMQGQGTHVSSLIEQGKELVVYALINAIMIRKILKKYD-KSPWL--- 154
             L+    + I G + G G            + +   ++     K+  K D K  WL   
Sbjct: 145 LELRPAKNVLIDG-VLGSGKTW---------VALDVCLS----YKVQCKMDFKIFWLNLK 190

Query: 155 -----RELMALHINLGETNVSSSTMAAMSSEGYRLTFNDDKLSLSCELFDS-------IR 202
                  ++ +   L      + T  +  S   +L  +  +  L   L  S       + 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLV 249

Query: 203 LD-------IE---LTCPVCLET----VFDPVS-LTCGHILCKMCACS---AASVSI--- 241
           L             L+C + L T    V D +S  T  HI     + +       S+   
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 242 VDGLKLAD-PREKC---PLCRQASVFMLFLQIYLINGCYINSCR-EYWEKRLQIERVERV 296
               +  D PRE     P   + S+    ++  L           + W K +  +++  +
Sbjct: 310 YLDCRPQDLPREVLTTNPR--RLSIIAESIRDGL--------ATWDNW-KHVNCDKLTTI 358

Query: 297 KQA 299
            ++
Sbjct: 359 IES 361

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            ++ +  C  C   +  P    CGH  C+ C  +           L+    KC  C++
Sbjct: 11  TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAAL----------LSSSSPKCTACQE 58

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
           E+ CP+CL+ +  PV++ CGH  C  C        I    + +    KCPLC
Sbjct: 20  EVICPICLDILQKPVTIDCGHNFCLKC--------ITQIGETSCGFFKCPLC 63

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 14/54 (25%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            L C  C      P  L C H LC  C              L     +CP+C+ 
Sbjct: 6   FLRCQQCQAEAKCPKLLPCLHTLCSGC--------------LEASGMQCPICQA 45

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 50.0 bits (119), Expect = 5e-08
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           +++    C  C E VF P++  C H +CK C   +    +            CP CR 
Sbjct: 48  KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVF----------SCPACRY 95

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           +I   C +C +   +PV   C H  C+ CA           L+      +C +C Q
Sbjct: 13  EIPFRCFICRQAFQNPVVTKCRHYFCESCA-----------LEHFRATPRCYICDQ 57

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           +L+    C  C E V+ PV+  C H +CK C   +    +            CP CR 
Sbjct: 74  KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVF----------SCPACRH 121

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 47.3 bits (113), Expect = 9e-08
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC 257
           E +C VCLE + +PV + CGH  CK C        I    +  +    CP+C
Sbjct: 15  EASCSVCLEYLKEPVIIECGHNFCKAC--------ITRWWEDLERDFPCPVC 58

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           +  EL C +C + + D V +  CG+  C  C        I   L  +D    CP C Q  
Sbjct: 12  IPDELLCLICKDIMTDAVVIPCCGNSYCDEC--------IRTALLESDEHT-CPTCHQND 62

Query: 262 V 262
           V
Sbjct: 63  V 63

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 14/59 (23%)

Query: 202 RLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           RL+  L C  C   + +PV L  C HI C  C                     CP+C  
Sbjct: 18  RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG-------------CPVCYT 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 15/77 (19%)

Query: 183 RLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIV 242
            +    ++  L CE+  +        C +C E   D     CGH++C  C  S       
Sbjct: 314 HIKVTQEQYELYCEMGST-----FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE---- 364

Query: 243 DGLKLADPREKCPLCRQ 259
                    + CP CR 
Sbjct: 365 ------SEGQGCPFCRC 375

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 202 RLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            +D  L C +C E     + +  C H  C +C        I   L     + +CP C  
Sbjct: 18  TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLC--------IRKFLSY---KTQCPTCCV 65

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 23/80 (28%)

Query: 180 EGYRLTFNDDKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASV 239
           +GY + F+               L+ +  CP+CL  + + V   CGH  CK C   +   
Sbjct: 5   QGYDVEFDPP-------------LESKYECPICLMALREAVQTPCGHRFCKACIIKS--- 48

Query: 240 SIVDGLKLADPREKCPLCRQ 259
                  + D   KCP+  +
Sbjct: 49  -------IRDAGHKCPVDNE 61

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            L+ EL C +C E   + V+L C H  C  C                    +CP+CR+
Sbjct: 60  VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-----------IECPICRK 106

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 12/58 (20%)

Query: 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           L   + C +C   + D  ++T C H  CK C        IV          +CP C  
Sbjct: 12  LTPYILCSICKGYLIDATTITECLHTFCKSC--------IVRHFYY---SNRCPKCNI 58

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 206 ELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           EL CP+CL+ + + ++   C H  C  C        I+  L+     ++CP CR+
Sbjct: 54  ELMCPICLDMLKNTMTTKECLHRFCADC--------IITALR--SGNKECPTCRK 98

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 206 ELTCPVCLE----TVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPRE-KCPLCRQA 260
            L CP+C+E        P  L CGH +C+ C          + L  +     +CP C + 
Sbjct: 15  VLECPICMESFTEEQLRPKLLHCGHTICRQCL---------EKLLASSINGVRCPFCSKI 65

Query: 261 SV 262
           + 
Sbjct: 66  TR 67

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
               ++C +C   + DPV  +C H+ C++C              L      CP CR 
Sbjct: 20  FVKSISCQICEHILADPVETSCKHLFCRICILRC----------LKVMGSYCPSCRY 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 18/80 (22%)

Query: 199 DSIRLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPR 251
             +R    ++CP+C++   +        VS  CGH+ C  C        + D LK     
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKN---A 51

Query: 252 EKCPLCRQASVFMLFLQIYL 271
             CP CR+      +  IY+
Sbjct: 52  NTCPTCRKKINHKRYHPIYI 71

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 206 ELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
            ++CP+C++   +        VS  CGH+ C  C        + D LK       CP CR
Sbjct: 3   MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKN---ANTCPTCR 51

Query: 259 QASVFMLFLQIYL 271
           +      +  IY+
Sbjct: 52  KKINHKRYHPIYI 64

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 203 LDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQAS 261
           +  EL C +C + + D V +  CG+  C  C        I   L  +D    CP C Q  
Sbjct: 10  IPDELLCLICKDIMTDAVVIPCCGNSYCDEC--------IRTALLESDEHT-CPTCHQND 60

Query: 262 V 262
           V
Sbjct: 61  V 61

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 194 SCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREK 253
           S  L  + +L+ +  C  C   +  P    CGH  C  C  S  S             + 
Sbjct: 20  SKTLLGT-KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG----------PQN 68

Query: 254 CPLCRQASVFMLFLQIYLINGCYINSC 280
           C  C    ++   + I   +  + ++ 
Sbjct: 69  CAACVHEGIYEEGISILESSSAFPDNA 95

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           L+  L C +C     D  ++  C H  CK C        IV  L   +  + CP+C  
Sbjct: 12  LNPHLMCVLCGGYFIDATTIIECLHSFCKTC--------IVRYL---ETSKYCPICDV 58

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 11/59 (18%)

Query: 203 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQA 260
           +     C +C+E + D      C  + C  C              L + R +CP CR  
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRW----------LTEQRAQCPHCRAP 67

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 18/68 (26%)

Query: 199 DSIRLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPR 251
             +R    ++CP+C++   +        VS  CGH+ C  C        + D LK     
Sbjct: 8   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKN---A 56

Query: 252 EKCPLCRQ 259
             CP CR+
Sbjct: 57  NTCPTCRK 64

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           L+ +  CP+CL  + + V   CGH  CK C   +          + D   KCP+  +
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKS----------IRDAGHKCPVDNE 61

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 12/57 (21%)

Query: 203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           L  E  C +C++     + L C H  C+ C        I            CP+CR 
Sbjct: 12  LTDEEECCICMDG-RADLILPCAHSFCQKC--------IDKWSDR---HRNCPICRL 56

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 19/98 (19%)

Query: 206 ELTCPVCLETVFD-------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCR 258
            ++CP+C++   +        VS  CGH+ C  C                     CP CR
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL-----------RDSLKNANTCPTCR 55

Query: 259 QASV-FMLFLQIYLINGCYINSCREYWEKRLQIERVER 295
           +                     C + + + +Q  R+  
Sbjct: 56  KKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIV 93

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           +L   + C VC E   +     CGH       C + +  +          + CP+CR 
Sbjct: 14  KLKEAMLCMVCCEEEINSTFCPCGH----TVCCESCAAQL----------QSCPVCRS 57

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 208 TCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            CP+CLE   +      C H  C +C        I   ++       CPLC+ 
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVC--------ITRWIRQ---NPTCPLCKV 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.58
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.58
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.56
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.56
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.56
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.55
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.52
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.5
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.48
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.47
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.46
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.46
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.43
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.42
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.42
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.41
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.41
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.4
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.4
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.39
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.36
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.35
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.34
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.34
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.34
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.33
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.3
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.28
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.27
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.27
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.26
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.26
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.25
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.23
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.22
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.18
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.18
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.17
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.17
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.12
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.11
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.1
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.01
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.01
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.95
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.93
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.93
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.89
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.89
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.84
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.83
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.8
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.77
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.76
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.72
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.61
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.16
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.67
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.35
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.2
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	97.15
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.09
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.81
3nw0_A	238	Non-structural maintenance of chromosomes element	92.25
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	91.69
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	89.53
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	88.24
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	82.42
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	80.75

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.58  E-value=1.2e-15  Score=114.53  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      .+.+++.||||++++.+||+++|||+||+.||..|+.           ....||.|+.++....+.    .|..++++++
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~~~~l~----pn~~L~~~i~   74 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-----------NSPTDPFNRQMLTESMLE----PVPELKEQIQ   74 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCCGGGCE----ECHHHHHHHH
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-----------cCCCCCCCcCCCChHhcc----hHHHHHHHHH
Confidence            3567999999999999999999999999999999982           246899999999877655    8888999999


Q ss_pred             HHHHHH
Q 044708          282 EYWEKR  287 (313)
Q Consensus       282 ~~~~~~  287 (313)
                      .|....
T Consensus        75 ~~~~~~   80 (85)
T 2kr4_A           75 AWMREK   80 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            886544

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.58  E-value=9.4e-16  Score=112.82  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      .+.+++.||||++++.+|++++|||+||+.||.+|+.          .+...||.||.++......    .|..++++++
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~~~l~----~n~~l~~~i~   69 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT----PNYVLKSLIA   69 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE----ECTTTHHHHH
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCChhhCc----cCHHHHHHHH
Confidence            3567999999999999999999999999999999982          3467899999998876544    6777888888


Q ss_pred             HHHH
Q 044708          282 EYWE  285 (313)
Q Consensus       282 ~~~~  285 (313)
                      .|..
T Consensus        70 ~~~~   73 (78)
T 1t1h_A           70 LWCE   73 (78)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.56  E-value=3.9e-15  Score=113.02  Aligned_cols=74  Identities=23%  Similarity=0.483  Sum_probs=60.2

Q ss_pred             ccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc-chhhhhhhhhhHHHHH
Q 044708          201 IRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV-FMLFLQIYLINGCYIN  278 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~n~~l~~  278 (313)
                      ..+.+++.||||++++.+|++++ |||+||..||..|+..         .+...||.||.++. ....    ..|..+.+
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~~~~----~~n~~l~~   74 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSPDAL----IANKFLRQ   74 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH---------CTTCCCTTTCCSSCCTTSC----EECHHHHH
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh---------cCCCcCcCCCCcCCCcccc----CcCHHHHH
Confidence            34668999999999999999999 9999999999999731         23579999999974 3333    37888999


Q ss_pred             HHHHHHHHH
Q 044708          279 SCREYWEKR  287 (313)
Q Consensus       279 l~~~~~~~~  287 (313)
                      +++.+....
T Consensus        75 ~i~~~~~~~   83 (92)
T 3ztg_A           75 AVNNFKNET   83 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998886654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.56  E-value=2.5e-15  Score=117.66  Aligned_cols=79  Identities=19%  Similarity=0.339  Sum_probs=63.9

Q ss_pred             cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .+.+++.|+||++.+.+|+++ +|||+||..||..|+           .....||.||..+...........|..+.+++
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i   79 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-----------ETSKYCPICDVQVHKTRPLLNIRSDKTLQDIV   79 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-----------TSCSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH-----------HhCCcCcCCCccccccCcccccCcCHHHHHHH
Confidence            456899999999999999998 999999999999998           34589999999988764443445788888888


Q ss_pred             HHHHHHHHhHH
Q 044708          281 REYWEKRLQIE  291 (313)
Q Consensus       281 ~~~~~~~~~~e  291 (313)
                      +.+.......+
T Consensus        80 ~~~~~~~~~~e   90 (108)
T 2ckl_A           80 YKLVPGLFKNE   90 (108)
T ss_dssp             HHHSTTHHHHH
T ss_pred             HHHhhhHHHHH
Confidence            88866444333

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.56  E-value=5.3e-15  Score=113.86  Aligned_cols=70  Identities=13%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             cCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .+.+++.||||+++|.+||+++|| |+||+.||..|+           .....||.||.++....+.    .|..+++++
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I   82 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-----------LSDQTDPFNRSPLTMDQIR----PNTELKEKI   82 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-----------TTSCBCTTTCSBCCTTTSE----ECHHHHHHH
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHH-----------HhCCCCCCCCCCCChhhce----EcHHHHHHH
Confidence            456899999999999999999999 999999999998           2356899999999877655    888899999


Q ss_pred             HHHHHH
Q 044708          281 REYWEK  286 (313)
Q Consensus       281 ~~~~~~  286 (313)
                      +.|...
T Consensus        83 ~~~~~~   88 (98)
T 1wgm_A           83 QRWLAE   88 (98)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.55  E-value=3.9e-15  Score=115.04  Aligned_cols=70  Identities=16%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      .+.+.+.||||++++.+||+++|||+||+.||..|+           .....||.|+.++....+.    .|..++++++
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I~   89 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-----------LNSPTDPFNRQTLTESMLE----PVPELKEQIQ   89 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHT-----------TSCSBCSSSCCBCCTTSSE----ECHHHHHHHH
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHH-----------HcCCCCCCCCCCCChhhce----ECHHHHHHHH
Confidence            456899999999999999999999999999999998           3357899999999876655    8888999998


Q ss_pred             HHHHH
Q 044708          282 EYWEK  286 (313)
Q Consensus       282 ~~~~~  286 (313)
                      .|...
T Consensus        90 ~~~~~   94 (100)
T 2kre_A           90 AWMRE   94 (100)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.52  E-value=7.3e-15  Score=113.10  Aligned_cols=74  Identities=19%  Similarity=0.314  Sum_probs=62.2

Q ss_pred             ccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708          201 IRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS  279 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l  279 (313)
                      ..+.+.+.|+||++.+.+|+++ +|||+||..|+..|+           .....||.||.++...+..    .|..+.++
T Consensus        17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~l~----~n~~l~~~   81 (99)
T 2y43_A           17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-----------SYKTQCPTCCVTVTEPDLK----NNRILDEL   81 (99)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred             HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHH-----------HCCCCCCCCCCcCChhhCC----cCHHHHHH
Confidence            3456789999999999999998 899999999999998           3457999999998875543    78899999


Q ss_pred             HHHHHHHHHh
Q 044708          280 CREYWEKRLQ  289 (313)
Q Consensus       280 ~~~~~~~~~~  289 (313)
                      ++.+...+..
T Consensus        82 i~~~~~~~~~   91 (99)
T 2y43_A           82 VKSLNFARNH   91 (99)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9988776543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.50  E-value=1e-14  Score=119.23  Aligned_cols=66  Identities=24%  Similarity=0.650  Sum_probs=51.0

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE  282 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~  282 (313)
                      +++++||||++.+.+|++++|||+||..||..|+           .....||.||.++.....  ...++..+..++..
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~--~~~~~~~i~~~~~~  116 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-----------KRKIECPICRKDIKSKTY--SLVLDNCINKMVNN  116 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT-----------TTCSBCTTTCCBCCCEEE--CHHHHHHHHHHHTT
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHH-----------HcCCcCCCCCCcCCCCCC--ccchhHHHHHHHHH
Confidence            3578999999999999999999999999999997           456789999999875431  12244445554443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.48  E-value=1.4e-14  Score=116.16  Aligned_cols=70  Identities=23%  Similarity=0.465  Sum_probs=57.1

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      .+.+++.||||++.+.+|++++|||+||..||..|+.          .....||.||.++.....   ...|..+.++++
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~---~~~n~~l~~~i~  114 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGRSYA---MQVNQPLQTVLN  114 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCC---CCCCHHHHHHHH
T ss_pred             hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCCCCC---CCCCHHHHHHHH
Confidence            3457899999999999999999999999999999982          345689999999876321   237788888887


Q ss_pred             HHH
Q 044708          282 EYW  284 (313)
Q Consensus       282 ~~~  284 (313)
                      .+.
T Consensus       115 ~~~  117 (124)
T 3fl2_A          115 QLF  117 (124)
T ss_dssp             HHS
T ss_pred             HHc
Confidence            764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.47  E-value=6e-15  Score=113.98  Aligned_cols=70  Identities=17%  Similarity=0.373  Sum_probs=55.6

Q ss_pred             cccCCccCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHH
Q 044708          200 SIRLDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYIN  278 (313)
Q Consensus       200 ~~~~~~~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~  278 (313)
                      ...+.+++.|+||++.+.+|++ ++|||+||..||..|+.          .....||.||.++...+..    .+..+.+
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~l~----~~~~~~~   81 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT----------EQRAQCPHCRAPLQLRELV----NCRWAEE   81 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE----ECTTHHH
T ss_pred             cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHH----------HCcCCCCCCCCcCCHHHhH----hhHHHHH
Confidence            3456789999999999999999 89999999999999983          1227899999999876654    4455555


Q ss_pred             HHHHH
Q 044708          279 SCREY  283 (313)
Q Consensus       279 l~~~~  283 (313)
                      +++.+
T Consensus        82 i~~~~   86 (100)
T 3lrq_A           82 VTQQL   86 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.46  E-value=2e-14  Score=113.67  Aligned_cols=75  Identities=27%  Similarity=0.507  Sum_probs=58.3

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh---hhhhhhhhHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML---FLQIYLINGCYIN  278 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~n~~l~~  278 (313)
                      ...+++.|+||++.+.+|++++|||+||..||..|+          ......||.||..+....   ......+|..+.+
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~   80 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTV----------EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT   80 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCC----------CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHH----------hHCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence            345789999999999999999999999999998876          134678999999987532   2223346777888


Q ss_pred             HHHHHHHH
Q 044708          279 SCREYWEK  286 (313)
Q Consensus       279 l~~~~~~~  286 (313)
                      ++..+...
T Consensus        81 ~i~~~~p~   88 (115)
T 3l11_A           81 IIQKHYPR   88 (115)
T ss_dssp             HHHHHSHH
T ss_pred             HHHHHCCH
Confidence            88777543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.46  E-value=1.6e-14  Score=114.68  Aligned_cols=72  Identities=26%  Similarity=0.478  Sum_probs=60.0

Q ss_pred             cccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHH
Q 044708          200 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYIN  278 (313)
Q Consensus       200 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~  278 (313)
                      ...+.+.+.||||++++.+|+++ +|||+||..||..|+           .  ..||.||.++...+..    .|..+.+
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-----------~--~~CP~Cr~~~~~~~~~----~n~~l~~   78 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-----------G--TGCPVCYTPAWIQDLK----INRQLDS   78 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-----------T--TBCSSSCCBCSCSSCC----CCHHHHH
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-----------c--CCCcCCCCcCcccccc----ccHHHHH
Confidence            34567899999999999999999 999999999998886           2  6899999998765543    7888888


Q ss_pred             HHHHHHHHHH
Q 044708          279 SCREYWEKRL  288 (313)
Q Consensus       279 l~~~~~~~~~  288 (313)
                      +++.+...+.
T Consensus        79 l~~~~~~~~~   88 (117)
T 1jm7_B           79 MIQLCSKLRN   88 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888766544

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=9.7e-14  Score=105.95  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=59.0

Q ss_pred             CccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCC-ccchhhhhhhhhhHHHHHH
Q 044708          204 DIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQA-SVFMLFLQIYLINGCYINS  279 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~~~~~~~~n~~l~~l  279 (313)
                      .+++.||||+++|.+||+++ |||+||+.||..|+...     ........||+  |+.. +...++.    .|..|+++
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~-----~~~~~~~~CP~tgc~~~~l~~~~L~----pn~~L~~~   75 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR-----QKRKKKAYCPQIGCSHTDIRKSDLI----QDEALRRA   75 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH-----HTTTCCBCCCSTTCCCCCBCGGGEE----ECHHHHHH
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc-----cCcCCCCCCCcCcCcccccCHhhCc----CCHHHHHH
Confidence            47899999999999999996 99999999999998321     01134678999  9877 7666654    78889999


Q ss_pred             HHHHHHH
Q 044708          280 CREYWEK  286 (313)
Q Consensus       280 ~~~~~~~  286 (313)
                      ++.+...
T Consensus        76 I~~~~~~   82 (94)
T 2yu4_A           76 IENHNKK   82 (94)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9888543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.42  E-value=6.4e-15  Score=108.39  Aligned_cols=62  Identities=32%  Similarity=0.787  Sum_probs=48.9

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      .+.+++.|+||++.+.+|++++|||+||..|+..|+..    ..........||.||.++...+..
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~----~~~~~~~~~~CP~Cr~~~~~~~l~   69 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKE----AVTSMGGKSSCPVCGISYSFEHLQ   69 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCC----CSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHh----cccCCCCCCcCCCCCCcCCHhhCC
Confidence            45688999999999999999999999999999888621    111113467999999998876543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.42  E-value=7.2e-14  Score=115.80  Aligned_cols=69  Identities=26%  Similarity=0.500  Sum_probs=57.5

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE  282 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~  282 (313)
                      +.+.+.|+||++.+.+|++++|||+||..||..|+.          .....||+||.++....   ....|..+.++++.
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~---~l~~n~~l~~lv~~  141 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK----------AQVFSCPACRHDLGQNY---IMIPNEILQTLLDL  141 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTC---CCCBCHHHHHHHHH
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH----------hCCCcCCCCCccCCCCC---CCCCCHHHHHHHHH
Confidence            457899999999999999999999999999999982          34568999999988762   12478888888887


Q ss_pred             HH
Q 044708          283 YW  284 (313)
Q Consensus       283 ~~  284 (313)
                      +.
T Consensus       142 ~~  143 (150)
T 1z6u_A          142 FF  143 (150)
T ss_dssp             HS
T ss_pred             Hh
Confidence            64

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=1.3e-14  Score=107.92  Aligned_cols=61  Identities=33%  Similarity=0.740  Sum_probs=49.4

Q ss_pred             ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ..+.+++.|+||++.+.+|+.++|||+||..|+..|+...     ........||.||.++.....
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCRVPYPFGNL   74 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHS-----BCTTSCBCCTTTCCCCCTTCC
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhc-----cCCCCCCCCCCCCCcCCHHhC
Confidence            4467889999999999999999999999999999998321     112346899999999876553

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.41  E-value=1.7e-13  Score=116.22  Aligned_cols=70  Identities=10%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE  282 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~  282 (313)
                      +.+.+.||||+++|.+||+++|||+||+.||..|+.          ..+..||.|+.++....++    .|..++++++.
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~----------~~~~tcP~t~~~l~~~~L~----pN~~Lk~~Ie~  168 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFDPVTRSPLTQDQLI----PNLAMKEVIDA  168 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE----ECHHHHHHHHH
T ss_pred             CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHH----------hCCCCCCCCcCCCChhhCc----chHHHHHHHHH
Confidence            457899999999999999999999999999999983          1123799999999877655    88889999988


Q ss_pred             HHHH
Q 044708          283 YWEK  286 (313)
Q Consensus       283 ~~~~  286 (313)
                      +...
T Consensus       169 ~~~~  172 (179)
T 2f42_A          169 FIQE  172 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.2e-13  Score=98.56  Aligned_cols=57  Identities=32%  Similarity=0.720  Sum_probs=47.6

Q ss_pred             ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ..+.+++.|+||++.+.+|++++|||+||..|+..|+.        .......||.||.++...+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCccc
Confidence            34668899999999999999999999999999999861        1135678999999987543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.3e-13  Score=99.87  Aligned_cols=56  Identities=21%  Similarity=0.468  Sum_probs=48.0

Q ss_pred             cccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          200 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       200 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ...+++++.|+||++.+.+|+++ +|||+||..||..|+           .....||+||.++...+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF-----------YYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH-----------HHCSSCTTTCCCCCSSCS
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH-----------HcCCcCCCcCcccCcccc
Confidence            34567889999999999999997 999999999999998           225789999999887654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-13  Score=100.64  Aligned_cols=56  Identities=29%  Similarity=0.571  Sum_probs=46.8

Q ss_pred             ccCCccCccccccccccCceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          201 IRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ..+.+++.|+||++.+.+|++++ |||+||..||..|+..         .....||+||.++...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSSCCTT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcCCCcc
Confidence            35668899999999999999999 9999999999999831         23478999999865544

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.2e-13  Score=96.87  Aligned_cols=54  Identities=24%  Similarity=0.581  Sum_probs=46.6

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .+.+.+.|+||++.+.+|+.++|||+||..|+..|+.          .....||.||.++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVKDK   64 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCTTT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCChhh
Confidence            4567899999999999999999999999999999971          34678999999987554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=1.8e-13  Score=123.86  Aligned_cols=69  Identities=10%  Similarity=0.016  Sum_probs=58.5

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE  282 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~  282 (313)
                      +.+.+.||||++++.+||+++|||+||+.||.+|+.          .+...||+||.+++....+    .|..++++++.
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~----------~~~~~cP~~~~~~~~~~l~----~n~~l~~~i~~  270 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLI----PNLAMKEVIDA  270 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCE----ECHHHHHHHHH
T ss_pred             CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHH----------HCCCCCcCCCCCCchhcCc----ccHHHHHHHHH
Confidence            457899999999999999999999999999999983          2233499999999876655    78889999988


Q ss_pred             HHH
Q 044708          283 YWE  285 (313)
Q Consensus       283 ~~~  285 (313)
                      |..
T Consensus       271 ~~~  273 (281)
T 2c2l_A          271 FIS  273 (281)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.8e-13  Score=97.05  Aligned_cols=52  Identities=35%  Similarity=0.701  Sum_probs=45.5

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ..+++.|+||++.+.+|+.++|||+||..||..|+           .....||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCHHH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCHhh
Confidence            44678999999999999999999999999999987           34579999999987654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=3e-14  Score=105.95  Aligned_cols=61  Identities=34%  Similarity=0.792  Sum_probs=49.1

Q ss_pred             ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ..+.+.+.|+||++.+.+|+.++|||+||..|+..|+....     .......||.||..+...+.
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-----LDKGESSCPVCRISYQPENI   74 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-----HTTSCCCCTTTCCSSCSSSC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-----cCCCCCcCCCCCCccCHHhc
Confidence            34667899999999999999999999999999999973211     01346799999999886553

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=4.2e-13  Score=99.33  Aligned_cols=50  Identities=26%  Similarity=0.672  Sum_probs=44.2

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ...+.+.|+||++.+.+|++++|||+||..|+..|+           .....||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF-----------RATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH-----------HHCSBCSSSCCBCC
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH-----------HCCCcCCCcCcccc
Confidence            345688999999999999999999999999999997           23568999999986

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.34  E-value=2.3e-13  Score=106.69  Aligned_cols=58  Identities=33%  Similarity=0.756  Sum_probs=48.1

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      .+.+.+.|+||++.+.+|++++|||+||..|+..|+..        ..+...||.||.++......
T Consensus        17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~~   74 (112)
T 1jm7_A           17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQ   74 (112)
T ss_dssp             HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCB
T ss_pred             hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHh--------CCCCCCCcCCCCcCCHhhcC
Confidence            34568899999999999999999999999999999731        12346899999998876654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=8.3e-13  Score=92.87  Aligned_cols=49  Identities=37%  Similarity=0.886  Sum_probs=41.6

Q ss_pred             ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      ..+++++.|+||++.+.+|++++|||+||..||.+|+..        ......||+|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH--------CSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc--------CCCCCcCcCC
Confidence            346788999999999999999999999999999999821        1346789998

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.33  E-value=5.2e-13  Score=112.21  Aligned_cols=72  Identities=24%  Similarity=0.506  Sum_probs=57.1

Q ss_pred             cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .+.+.+.||||++.+.+|+++ +|||+||..||..|+.          .....||.||.++...+.   ...|..+.+++
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~---l~~~~~l~~~i  116 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----------SGNKECPTCRKKLVSKRS---LRPDPNFDALI  116 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCCSGGG---EEECHHHHHHH
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----------hCcCCCCCCCCcCCCccc---CCcCHHHHHHH
Confidence            456788999999999999997 9999999999999982          336789999999865432   24677788888


Q ss_pred             HHHHHH
Q 044708          281 REYWEK  286 (313)
Q Consensus       281 ~~~~~~  286 (313)
                      ..+...
T Consensus       117 ~~~~~~  122 (165)
T 2ckl_B          117 SKIYPS  122 (165)
T ss_dssp             HHHC--
T ss_pred             HHHHcc
Confidence            877554

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.30  E-value=7.7e-13  Score=105.06  Aligned_cols=55  Identities=29%  Similarity=0.687  Sum_probs=47.1

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      .+.+.+.|+||++.+.+|++++|||+||..||..|+.          .....||.||.++.....
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~   68 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQL   68 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh----------hCCCCCCCCCCCcCHHhc
Confidence            4678899999999999999999999999999999973          123489999999887654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=97.58  Aligned_cols=57  Identities=28%  Similarity=0.702  Sum_probs=47.5

Q ss_pred             ccCCccCccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          201 IRLDIELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ..+.+.+.|+||++.+.+    |+.++|||+||..|+..|+..        ......||.||.++...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCCSS
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccchh
Confidence            346678999999999999    999999999999999999731        123579999999987654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.27  E-value=3.4e-12  Score=113.42  Aligned_cols=72  Identities=22%  Similarity=0.343  Sum_probs=59.6

Q ss_pred             cCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCCccchhhhhhhhhhHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQASVFMLFLQIYLINGCYIN  278 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~n~~l~~  278 (313)
                      ....+++||||+++|.+||+. .|||+||+.||..||.         ..+...||+  |+..+...++.    .|..+.+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~---------~~~~~~CPvtGCr~~l~~~dL~----pN~~L~~  243 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ---------GYTTRDCPQAACSQVVSMRDFV----RDPIMEL  243 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST---------TCSCEECSGGGCSCEECGGGEE----ECHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH---------hCCCCCCCcccccCcCchhhCC----cCHHHHH
Confidence            346789999999999999985 8999999999999972         124578999  99998877765    7888999


Q ss_pred             HHHHHHHH
Q 044708          279 SCREYWEK  286 (313)
Q Consensus       279 l~~~~~~~  286 (313)
                      +++.+...
T Consensus       244 lve~~k~r  251 (267)
T 3htk_C          244 RCKIAKMK  251 (267)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877443

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-12  Score=88.12  Aligned_cols=48  Identities=38%  Similarity=0.877  Sum_probs=40.6

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCC
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLC  257 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C  257 (313)
                      .+.+.+.|+||++.+.+|+.++|||+||..||.+|+.     .   ......||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~---~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE-----D---LERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT-----S---SCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH-----h---cCCCCCCCCC
Confidence            4567899999999999999999999999999999962     0   1356789998

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=7.8e-13  Score=95.07  Aligned_cols=53  Identities=26%  Similarity=0.731  Sum_probs=45.1

Q ss_pred             CCccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          203 LDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ..+++.|+||++.+.+|       +.++|||+||..|+.+|+           .....||.||.++...+.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH-----------HcCCCCCCCCCccChhhe
Confidence            34688999999999988       889999999999999998           234689999999876553

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-12  Score=93.15  Aligned_cols=51  Identities=29%  Similarity=0.780  Sum_probs=43.6

Q ss_pred             cCCccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          202 RLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .+.+...|+||++.+.+|       +.++|||.||..||..|+           .....||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH-----------HHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH-----------HcCCCCCCCCCccCc
Confidence            345788999999999988       889999999999999997           235689999998753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.26  E-value=1.2e-12  Score=103.59  Aligned_cols=55  Identities=24%  Similarity=0.632  Sum_probs=47.1

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      .+.+++.||||++.+.+|++++|||+||..||.+|+.          .....||.||.++...+.
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGC
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh----------HCcCcCCCCCCCCCHhhc
Confidence            3557899999999999999999999999999999983          225689999999887653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.25  E-value=2.4e-12  Score=91.15  Aligned_cols=51  Identities=25%  Similarity=0.518  Sum_probs=43.3

Q ss_pred             ccCccccccc-cccCc----eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLE-TVFDP----VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~-~~~~P----v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +++.||||++ .+.+|    +.++|||+||..|+.+|+.          .+...||.||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----------cCCCcCCCCCCcccccc
Confidence            4788999999 99999    5689999999999999962          34578999999987655

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.25  E-value=8.6e-13  Score=108.16  Aligned_cols=53  Identities=25%  Similarity=0.715  Sum_probs=45.6

Q ss_pred             ccCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ..+++.+.||||++++.+|++++|||+||..||..|+.          .....||.||.++..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS----------SGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTTCC
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh----------cCCCCCCCCCCcccc
Confidence            35678999999999999999999999999999999972          334689999997643

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.23  E-value=6.1e-12  Score=92.52  Aligned_cols=54  Identities=26%  Similarity=0.600  Sum_probs=43.4

Q ss_pred             cCCccCcccccccccc--CceEcc--cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          202 RLDIELTCPVCLETVF--DPVSLT--CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~--~Pv~l~--CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .++++++||||++.+.  +++.+|  |||+||..|+..++.          .....||.||.++....
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~----------~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT----------SSCSBCTTTCCBCSSCS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh----------cCCCCCCCCCCccCCCc
Confidence            4568899999999874  556655  999999999988862          34679999999987654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.22  E-value=3.6e-12  Score=87.66  Aligned_cols=48  Identities=27%  Similarity=0.512  Sum_probs=41.4

Q ss_pred             CccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .+.+.|+||++.+.+|++++|||+||..|+..              ....||.||..+....
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEeecCC
Confidence            46789999999999999999999999999832              3568999999987544

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.18  E-value=4e-12  Score=89.24  Aligned_cols=50  Identities=28%  Similarity=0.765  Sum_probs=43.2

Q ss_pred             ccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +++.|+||++.+.+|       +.++|||.||..|+.+|+           .....||.||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH-----------HcCCCCCCCCccCCccc
Confidence            567899999999887       788999999999999997           23568999999987655

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.18  E-value=1.4e-11  Score=83.98  Aligned_cols=49  Identities=35%  Similarity=0.678  Sum_probs=41.7

Q ss_pred             CCccCccccccccccC---ceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          203 LDIELTCPVCLETVFD---PVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~---Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ++++..|+||++.+.+   ++.++ |||.||..|+.+|+           .....||.||.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence            3567899999999987   78887 99999999999997           44568999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=5.1e-12  Score=90.64  Aligned_cols=52  Identities=29%  Similarity=0.646  Sum_probs=45.0

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .+.+...|+||++.+.+ +.++|||.||..|+..|+           .....||.||.++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCCC
Confidence            45678899999999999 889999999999999986           45789999999887544

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.2e-11  Score=90.55  Aligned_cols=53  Identities=26%  Similarity=0.590  Sum_probs=44.0

Q ss_pred             cCCccCccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          202 RLDIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ...++..|+||++.+.+|   +.++|||.||..||.+|+           .....||+||..+....
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL-----------EQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH-----------TTTCSCTTTCCCCCCSC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH-----------HcCCcCcCcCCccCCcc
Confidence            345788999999999866   456999999999999998           34568999999987655

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.17  E-value=9e-12  Score=105.05  Aligned_cols=56  Identities=29%  Similarity=0.687  Sum_probs=47.8

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      .+++.+.||||++++.+|++++|||+||..|+..|+.          .....||.||.++...+..
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~   69 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQLF   69 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGCE
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH----------hCCCCCCCCccCcchhhhh
Confidence            5678999999999999999999999999999999973          1234899999998876543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.16  E-value=1.6e-11  Score=87.69  Aligned_cols=51  Identities=29%  Similarity=0.598  Sum_probs=41.1

Q ss_pred             CCccCcccccccccc---CceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          203 LDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~---~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ...+..|+||++.+.   .++.++|||.||..||..|+.           ....||+||..+...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-----------TNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-----------cCCCCcCcCccccCc
Confidence            446788999999874   457789999999999999982           234699999987643

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.14  E-value=1.4e-11  Score=87.83  Aligned_cols=48  Identities=29%  Similarity=0.718  Sum_probs=41.2

Q ss_pred             ccCccccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ++..|+||++.+.+| +.++|||+||..|+.+|+           .....||.||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWI-----------RQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH-----------HHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHH-----------hCcCcCcCCChhhHh
Confidence            567899999999997 678999999999999997           234689999998763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.12  E-value=2e-11  Score=83.18  Aligned_cols=47  Identities=34%  Similarity=0.766  Sum_probs=39.8

Q ss_pred             ccCccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          205 IELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       205 ~~l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ++..|+||++.+.+    ++.++|||.||..|+.+|+.           ....||+||.+++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-----------EGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-----------HTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-----------cCCcCCCCCCcCC
Confidence            46789999999866    77889999999999999982           2378999998864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.11  E-value=3.5e-11  Score=90.99  Aligned_cols=50  Identities=26%  Similarity=0.596  Sum_probs=42.5

Q ss_pred             CCccCccccccccccC---ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          203 LDIELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~---Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ..++..|+||++.+.+   ++.++|||.||..||..|+           .....||+||..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl-----------~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL-----------QKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH-----------TTTCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH-----------HcCCcCcCcCccCCC
Confidence            4567899999998887   7789999999999999998           345689999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.5e-11  Score=88.26  Aligned_cols=50  Identities=24%  Similarity=0.459  Sum_probs=42.1

Q ss_pred             CCccCccccccccccCc---eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          203 LDIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~P---v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ..++..|+||++.+.++   +.++|||.||..||..|+           .....||+||.++..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~-----------~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-----------KANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH-----------HHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH-----------HcCCcCcCcCCcCCC
Confidence            44678999999999887   678999999999999997           224589999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=3.2e-11  Score=87.40  Aligned_cols=51  Identities=29%  Similarity=0.613  Sum_probs=42.0

Q ss_pred             cCCccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          202 RLDIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .+.++..|+||++.+.++..+   +|||.||..||..|+.           ....||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-----------~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-----------VRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-----------HCSBCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-----------cCCcCCCcCccccc
Confidence            456788999999999877544   9999999999999982           23489999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=5.7e-11  Score=95.36  Aligned_cols=51  Identities=27%  Similarity=0.741  Sum_probs=44.7

Q ss_pred             CccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          204 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      .+++.|+||++.+.+|       +.++|||+||..||.+|+           .....||.||..+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHH-----------TTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHH-----------HhCCCCCCCCCcCcccc
Confidence            3678999999999999       889999999999999998           44569999999987655

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=4e-11  Score=87.37  Aligned_cols=48  Identities=38%  Similarity=0.881  Sum_probs=41.0

Q ss_pred             cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+.++..|+||++.+.+|+.+||||. ||..|+..               ...||.||.++...
T Consensus        21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCCC
T ss_pred             cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---------------CCCCccCCceecCc
Confidence            34577899999999999999999999 99999942               25899999987653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.01  E-value=1.1e-10  Score=84.76  Aligned_cols=48  Identities=38%  Similarity=0.896  Sum_probs=41.3

Q ss_pred             cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+.+++.|+||++.+.+|+.+||||. ||..|+..|               ..||.||.++...
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFK   68 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEE
T ss_pred             cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCc
Confidence            45578899999999999999999999 999998432               6899999988654

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.95  E-value=3.5e-10  Score=88.81  Aligned_cols=54  Identities=20%  Similarity=0.388  Sum_probs=41.9

Q ss_pred             ccCccccccccccCce------------------EcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          205 IELTCPVCLETVFDPV------------------SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv------------------~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+..|+||++.|.+|+                  .++|||.||..||..|+...    .  ......||+||..+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~--~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----N--KDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----C--CSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----c--CCCCCcCCCCCCccCCC
Confidence            4568999999997765                  67999999999999997211    0  13457899999987644

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=7.1e-10  Score=84.20  Aligned_cols=58  Identities=21%  Similarity=0.386  Sum_probs=43.7

Q ss_pred             ccCccccccccccCceEc---ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCC--CcCC--ccchh
Q 044708          205 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPREKCPL--CRQA--SVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--Cr~~--~~~~~  265 (313)
                      +.++|+||++.+..|+++   +|||.||..|+..++......+   ......||.  |+..  +....
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~~~~~~~   68 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQGHLQENE   68 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCCEECHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCCccCHHH
Confidence            477899999999988764   6999999999999985332221   124578999  9998  55443

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.93  E-value=4.2e-10  Score=79.40  Aligned_cols=49  Identities=24%  Similarity=0.566  Sum_probs=41.9

Q ss_pred             CccCccccccccccCceEc--ccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          204 DIELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .++..|+||++...+++.+  ||||. ||..|+..++           .....||+||.++..
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK-----------KRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH-----------HTTCCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH-----------HcCCcCCCcCcchhc
Confidence            3677899999999999987  99999 8999999886           235689999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=9.3e-10  Score=81.29  Aligned_cols=49  Identities=31%  Similarity=0.596  Sum_probs=39.7

Q ss_pred             ccCccccccccccC--------------ceEcc-cCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          205 IELTCPVCLETVFD--------------PVSLT-CGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       205 ~~l~C~IC~~~~~~--------------Pv~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ++..|+||++.+.+              ++.++ |||.|+..||.+|+           .....||+||.++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-----------KQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-----------TTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-----------HhCCCCCCcCCCcchh
Confidence            46679999998876              45554 99999999999997           3456999999987654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.89  E-value=7.1e-10  Score=104.37  Aligned_cols=51  Identities=27%  Similarity=0.538  Sum_probs=44.1

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ....|+||++.+.+|+.+||||.||..|+..|..          .....||.||.++....
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~----------~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH----------HTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh----------cCCCCCCCCCCccCCce
Confidence            3479999999999999999999999999999872          14678999999987655

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.84  E-value=1.1e-09  Score=76.90  Aligned_cols=48  Identities=23%  Similarity=0.589  Sum_probs=40.9

Q ss_pred             ccCccccccccccCceEc--ccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ....|+||++...+++.+  ||||. ||..|+..++           .....||+||.++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK-----------KAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH-----------HTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH-----------HhCCcCCCcCchhhc
Confidence            456799999999999887  99998 9999999886           234789999998753

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.83  E-value=1.1e-09  Score=80.46  Aligned_cols=47  Identities=32%  Similarity=0.784  Sum_probs=40.5

Q ss_pred             CCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      +.++..|+||++.+.+|+.+||||. ||..|+..+               ..||.||.++...
T Consensus        15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~   62 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEE
T ss_pred             CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCe
Confidence            4567899999999999999999999 999999432               3899999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.80  E-value=1.6e-09  Score=86.86  Aligned_cols=52  Identities=27%  Similarity=0.759  Sum_probs=44.8

Q ss_pred             CccCccccccccccCc-------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          204 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~P-------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      .+...|+||++.+.+|       +.++|||+||..|+.+|+           .....||+||.++...+.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~  128 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY  128 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH-----------HHCSBCTTTCCBCCGGGE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH-----------HcCCCCCCCCCcCChhcc
Confidence            4678899999999887       888999999999999998           335699999999887653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.77  E-value=1.3e-09  Score=76.03  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=43.3

Q ss_pred             cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      .+.||||++++.+||.+ +|||+||+.||.+|+.           ....||+++.++...+++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-----------~~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGCE
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-----------hCCCCcCCcCCCChhhcE
Confidence            57899999999999999 8999999999999982           123599999998877654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=3e-09  Score=75.93  Aligned_cols=46  Identities=33%  Similarity=0.649  Sum_probs=39.6

Q ss_pred             CccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          204 DIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+...|+||++...+++.+||||. ||..|+..               ...||+||.++...
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---------------CCCCCCCCcchhce
Confidence            357889999999999999999999 99999953               35899999987653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.72  E-value=8.4e-09  Score=80.09  Aligned_cols=48  Identities=23%  Similarity=0.485  Sum_probs=40.0

Q ss_pred             ccCccccccccccCc------------------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFDP------------------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ++..|+||++.+.++                  +.++|||.|+..||..|+           .....||+||.+...
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-----------HcCCcCcCCCCccee
Confidence            456899999998866                  346899999999999998           456789999998654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.61  E-value=6.7e-09  Score=96.91  Aligned_cols=48  Identities=42%  Similarity=0.865  Sum_probs=41.6

Q ss_pred             cCCccCccccccccccCceEcccCCc-chHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .+.+++.|+||++.+.+|+.+||||. ||..|+..+               ..||.||.++...
T Consensus       291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~  339 (345)
T 3t6p_A          291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGT  339 (345)
T ss_dssp             HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEE
T ss_pred             hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCe
Confidence            45678999999999999999999999 999998432               5899999988643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.40  E-value=3.6e-08  Score=77.70  Aligned_cols=47  Identities=26%  Similarity=0.528  Sum_probs=0.5

Q ss_pred             cCccccccccccCc-----------------eE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          206 ELTCPVCLETVFDP-----------------VS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       206 ~l~C~IC~~~~~~P-----------------v~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      +-.|+||++.+.+|                 +. ++|+|.|+..||.+|+           .....||+||.+...
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-----------~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF  112 (117)
T ss_dssp             C---------------------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-----------HcCCcCCCCCCeeee
Confidence            45899999998764                 22 4899999999999997           446789999998643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=1.4e-06  Score=63.90  Aligned_cols=52  Identities=17%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             ccCccccccccc--cCceEcccC-----CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETV--FDPVSLTCG-----HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~--~~Pv~l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ++..|+||++.+  .+++.+||.     |.|...||.+|+..         .....||+||..+....
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCCCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeeecCc
Confidence            567899999876  468888996     99999999999831         23468999999987543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.67  E-value=2.8e-05  Score=58.63  Aligned_cols=47  Identities=21%  Similarity=0.461  Sum_probs=36.6

Q ss_pred             ccccccccccCc-eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          208 TCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       208 ~C~IC~~~~~~P-v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      .|++|.-.+..- .++||.|.||..|+..|..          .....||.|+.++..-
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~----------~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK----------KGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHh----------ccCCCCcCcCCeeeee
Confidence            488898766543 4579999999999988862          4567899999987643

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=0.00024  Score=51.04  Aligned_cols=51  Identities=20%  Similarity=0.430  Sum_probs=38.9

Q ss_pred             ccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          205 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ....|.||.+.+..-..- .|+|.|=..||.+|+.         ......||.||.+....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~---------~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST---------TCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH---------hcCCCCCCCCcCcCCCC
Confidence            346799999998754443 7999999999999972         12237899999886643

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.20  E-value=0.0002  Score=65.92  Aligned_cols=61  Identities=20%  Similarity=0.370  Sum_probs=40.6

Q ss_pred             CccCccccccccccC----ceE----cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          204 DIELTCPVCLETVFD----PVS----LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~----Pv~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      +....|+||...+.+    |..    .+|||.|-..|+.+|+.........-......||.||.+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            356789999998776    322    3699999999999998422110000011235799999988743

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=97.15  E-value=0.00038  Score=72.00  Aligned_cols=74  Identities=12%  Similarity=0.014  Sum_probs=63.4

Q ss_pred             ccCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708          201 IRLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS  279 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l  279 (313)
                      ..+.+++.|||-.+++.|||++|.| ++|-+.+|.+|+           .....||.=|.++.....+    .|..++..
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl-----------~~~~tdP~Tr~~L~~~~li----PN~~Lk~~  950 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-----------LSDSTDPFNRMPLKLEDVT----PNEELRQK  950 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHH-----------hcCCCCCCCCCCCCccccc----ccHHHHHH
Confidence            4567899999999999999999998 699999999998           3356899999999877765    88999999


Q ss_pred             HHHHHHHHHh
Q 044708          280 CREYWEKRLQ  289 (313)
Q Consensus       280 ~~~~~~~~~~  289 (313)
                      ++.|..+...
T Consensus       951 I~~w~~~~~~  960 (968)
T 3m62_A          951 ILCFKKQKKE  960 (968)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9998776553

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.09  E-value=0.00039  Score=47.81  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             ccCccccccccccCceEcccC--C---cchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          205 IELTCPVCLETVFDPVSLTCG--H---ILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~Cg--H---~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      +...|.||++...+|..+||.  +   .|=..|+.+|+..         ++...||+|+.++..
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeeec
Confidence            566899999887788878865  3   6888999999831         235789999988753

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.81  E-value=0.0005  Score=52.09  Aligned_cols=32  Identities=25%  Similarity=0.584  Sum_probs=27.9

Q ss_pred             ccCcccccccc-ccCceE--cccCCcchHHHHHHh
Q 044708          205 IELTCPVCLET-VFDPVS--LTCGHILCKMCACSA  236 (313)
Q Consensus       205 ~~l~C~IC~~~-~~~Pv~--l~CgH~FC~~Cl~~~  236 (313)
                      +++.|+||.+. +.+|+.  ++|+|+||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            56899999965 788888  899999999999873

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.25  E-value=0.12  Score=45.33  Aligned_cols=50  Identities=20%  Similarity=0.444  Sum_probs=38.3

Q ss_pred             cCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          206 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      -..|.||.+++..-+.- .|+|.|=..|+..|+.         ......||.|+.+-+..
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~---------~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT---------TCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHH---------hCCCCCCCCCCCCCCCC
Confidence            45799999998865544 4999999999999872         13457999999875543

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=91.69  E-value=0.33  Score=34.73  Aligned_cols=34  Identities=26%  Similarity=0.593  Sum_probs=28.2

Q ss_pred             ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708          205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS  238 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~  238 (313)
                      ..+.|.+|.+-+.+.....|    +|.||..|-...+.
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk   51 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   51 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence            57889999999998766544    69999999988874

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.53  E-value=0.39  Score=44.57  Aligned_cols=64  Identities=20%  Similarity=0.421  Sum_probs=45.0

Q ss_pred             ccCccccccccccCceEc-ccCCcchHHH--HHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          205 IELTCPVCLETVFDPVSL-TCGHILCKMC--ACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l-~CgH~FC~~C--l~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      -.+.||+-...+..|+.- .|.|.-|..-  +....         .......||+|.+.+...++.    ++..+..++.
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~---------~~~~~W~CPIC~k~~~~~dL~----ID~~~~~IL~  314 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQ---------LQIPTWQCPVCQIDIALENLA----ISEFVDDILQ  314 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHH---------HHSCCCBCTTTCCBCCGGGEE----EBHHHHHHHT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHh---------hcCCceeCCCCCcccCHHHee----EcHHHHHHHH
Confidence            468999999999999975 7999955443  22221         125678999999998887755    5555554443

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=88.24  E-value=0.54  Score=43.47  Aligned_cols=64  Identities=20%  Similarity=0.501  Sum_probs=44.7

Q ss_pred             CccCccccccccccCceEc-ccCCcchHH--HHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          204 DIELTCPVCLETVFDPVSL-TCGHILCKM--CACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~--Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .-.+.||+-...+..|+.- .|.|.-|-.  -+....         .......||+|.+.+...++.    ++..+..++
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~---------~~~~~W~CPiC~k~~~~~dL~----ID~~~~~IL  279 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMN---------EKKPTWICPVCDKKAAYESLI----LDGLFMEIL  279 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHH---------HHSCCCBCTTTCSBCCGGGEE----EBHHHHHHH
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHH---------hhCCCeECCCCCcccCHHHeE----EcHHHHHHH
Confidence            3578999999999999974 799995543  222221         125678999999998887754    455454444

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=80.75  E-value=2.1  Score=31.27  Aligned_cols=48  Identities=21%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             cCcccccccccc-----CceEc--ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          206 ELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       206 ~l~C~IC~~~~~-----~Pv~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .-.|.||.+.+-     ++...  .|+-..|+.|..--.          ..+...||.|...+..
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----------keG~q~CpqCktrYkr   70 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----------REGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----------HTSCSSCTTTCCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----------hccCccccccCCcccc
Confidence            457999998743     23222  588889999985443          2667899999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-07
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-06
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-04

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            +   L CP+CLE + +PVS  C HI CK C        ++  L       +CPLC+ 
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFC--------MLKLLNQKKGPSQCPLCKN 66

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 14/54 (25%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            L C  C      P  L C H LC  C  ++                +CP+C+ 
Sbjct: 6   FLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGM--------------QCPICQA 45

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
            ++C +C   + DPV  +C H+ C++C        I+  LK+      CP CR 
Sbjct: 23  SISCQICEHILADPVETSCKHLFCRIC--------ILRCLKVMGS--YCPSCRY 66

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 189 DKLSLSCELFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 248
           ++  L CE+  + +L     C +C E   D     CGH++C  C  S             
Sbjct: 11  EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSW----------QE 55

Query: 249 DPREKCPLCRQ 259
              + CP CR 
Sbjct: 56  SEGQGCPFCRC 66

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 206 ELTCPVCLETVFDPVSLTCGHILCKMC 232
              CP+ LE + DPV ++ G    +  
Sbjct: 8   YFRCPISLELMKDPVIVSTGQTYERSS 34

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 12/52 (23%)

Query: 209 CPVCLETVFDPV-SLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ 259
           CP+CLE   +   +L C H  C +C             +       CPLC+ 
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCI-----------TRWIRQNPTCPLCKV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.6
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.59
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.54
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.51
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.48
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.45
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.34
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.29
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.2
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.17
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.11
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.07
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.81
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.66
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.28
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	93.43

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.3e-16  Score=116.51  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=59.7

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      ++.+++.||||+++|.+||+++|||+||+.||.+|+.          .....||.||.++...+..    .|..|+++++
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~----------~~~~~cP~c~~~l~~~~l~----pN~~L~~~I~   68 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLI----PNLAMKEVID   68 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCE----ECHHHHHHHH
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHh----------cCCccCCCccccccccccc----cHHHHHHHHH
Confidence            3458999999999999999999999999999999972          3456799999998876654    7888999998


Q ss_pred             HHHH
Q 044708          282 EYWE  285 (313)
Q Consensus       282 ~~~~  285 (313)
                      .|.+
T Consensus        69 ~~l~   72 (80)
T d2c2la2          69 AFIS   72 (80)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.5e-16  Score=114.43  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             cCCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCR  281 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~  281 (313)
                      ++.+++.||||+++|.+||+++|||+||+.||..|+.          .+...||.|+.++...+..    .|..|+++++
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~----------~~~~~cP~~~~~l~~~~l~----pN~~L~~~I~   69 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT----PNYVLKSLIA   69 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE----ECTTTHHHHH
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHH----------HCCCCCCcccccCCccccc----chHHHHHHHH
Confidence            3558999999999999999999999999999999982          3456799999998876654    6788888888


Q ss_pred             HHHH
Q 044708          282 EYWE  285 (313)
Q Consensus       282 ~~~~  285 (313)
                      .|.+
T Consensus        70 ~~~~   73 (78)
T d1t1ha_          70 LWCE   73 (78)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-16  Score=118.34  Aligned_cols=71  Identities=28%  Similarity=0.627  Sum_probs=55.1

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHHHH
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSCRE  282 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~  282 (313)
                      +++.+.||||++++.+|++++|||+||..||.+|+..        ..+...||.||.++...+..    .|..+.++++.
T Consensus        18 l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~l~----~n~~l~~~ve~   85 (103)
T d1jm7a_          18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQ----ESTRFSQLVEE   85 (103)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCB----CCCSSSHHHHH
T ss_pred             cccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHH--------CCCCCcCcCCCCcCChhhCC----cCHHHHHHHHH
Confidence            4578999999999999999999999999999999721        13446899999998766643    45555556665


Q ss_pred             HHH
Q 044708          283 YWE  285 (313)
Q Consensus       283 ~~~  285 (313)
                      +.+
T Consensus        86 l~~   88 (103)
T d1jm7a_          86 LLK   88 (103)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-15  Score=114.34  Aligned_cols=70  Identities=27%  Similarity=0.510  Sum_probs=57.5

Q ss_pred             ccCCccCccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHH
Q 044708          201 IRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINS  279 (313)
Q Consensus       201 ~~~~~~l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l  279 (313)
                      ..+.+.++||||++++.+|+++ +|||+||..||.+|+             ...||.||.++...+..    .|..+.++
T Consensus        17 ~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-------------~~~CP~Cr~~~~~~~l~----~n~~l~~l   79 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-------------GTGCPVCYTPAWIQDLK----INRQLDSM   79 (97)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-------------TTBCSSSCCBCSCSSCC----CCHHHHHH
T ss_pred             HhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHH-------------hccccccCCcCchhhCc----ccHHHHHH
Confidence            4567889999999999999986 799999999998886             12599999998776654    78888888


Q ss_pred             HHHHHHHH
Q 044708          280 CREYWEKR  287 (313)
Q Consensus       280 ~~~~~~~~  287 (313)
                      ++.+...+
T Consensus        80 v~~~~~~~   87 (97)
T d1jm7b_          80 IQLCSKLR   87 (97)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88775543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.4e-15  Score=108.90  Aligned_cols=53  Identities=25%  Similarity=0.640  Sum_probs=45.7

Q ss_pred             CCccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          203 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +.+.+.||||++.+.+|++++|||+||+.||.+|+.          .....||.||.++...+
T Consensus        20 ~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGG
T ss_pred             hccCcCCccCCcchhcceecCCCChhhHHHHHHHHh----------hCCCcCcccCCCCChhh
Confidence            346789999999999999999999999999999972          24457999999987665

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=107.26  Aligned_cols=71  Identities=14%  Similarity=0.100  Sum_probs=60.3

Q ss_pred             cCCccCccccccccccCceEcccC-CcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhhhhhhhhHHHHHHH
Q 044708          202 RLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFLQIYLINGCYINSC  280 (313)
Q Consensus       202 ~~~~~l~C~IC~~~~~~Pv~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~  280 (313)
                      .+.+++.||||+++|.+||+++|| |+||+.||.+|+           .....||.|+.++...++.    .|..|++.+
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l-----------~~~~~~P~~~~~l~~~~L~----pN~~Lr~~I   82 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-----------LSDQTDPFNRSPLTMDQIR----PNTELKEKI   82 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-----------TTSCBCTTTCSBCCTTTSE----ECHHHHHHH
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHH-----------HhcCCcccccccccchhhc----chHHHHHHH
Confidence            345789999999999999999866 589999999997           4456899999999877765    789999999


Q ss_pred             HHHHHHH
Q 044708          281 REYWEKR  287 (313)
Q Consensus       281 ~~~~~~~  287 (313)
                      +.|.+.+
T Consensus        83 ~~~~~~~   89 (98)
T d1wgma_          83 QRWLAER   89 (98)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            9886653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=6.9e-14  Score=94.70  Aligned_cols=50  Identities=12%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CccccccccccCceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhhh
Q 044708          207 LTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLFL  267 (313)
Q Consensus       207 l~C~IC~~~~~~Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~  267 (313)
                      +.||||++.+.+||.+ .|||+||+.||.+|+.           ....||.||.++...+.+
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~-----------~~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGCE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHh-----------hccCCCccCCcCCHHhce
Confidence            5799999999999987 4999999999999982           245799999999877754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.2e-13  Score=97.87  Aligned_cols=51  Identities=27%  Similarity=0.517  Sum_probs=43.8

Q ss_pred             cCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchhh
Q 044708          206 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFMLF  266 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~  266 (313)
                      ...|+||++.+.+|+.++|||.||..||.+|+.          .+...||+||..+.....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~----------~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHH----------TTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHH----------HCcCcCCCCCcCccCCce
Confidence            356999999999999999999999999999972          345679999999876553

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.4e-13  Score=90.48  Aligned_cols=47  Identities=28%  Similarity=0.555  Sum_probs=40.7

Q ss_pred             ccCccccccccccCceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      +.+.|+||++.+.+|++++|||+||..||.+              ....||.||.+++...
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHc--------------CCCcCcCCCCcccCCC
Confidence            4679999999999999999999999999842              3568999999987654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.8e-12  Score=89.27  Aligned_cols=51  Identities=27%  Similarity=0.584  Sum_probs=39.7

Q ss_pred             ccCcccccccccc-Cc----eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccchh
Q 044708          205 IELTCPVCLETVF-DP----VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFML  265 (313)
Q Consensus       205 ~~l~C~IC~~~~~-~P----v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~  265 (313)
                      ++..||||++.+. .|    +.++|||+||..||..|+.          .....||.||+++...+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~----------~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhC----------cCcCCCCCCCcCccccc
Confidence            5789999998653 22    4568999999999999972          33457999999986554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.17  E-value=2.8e-12  Score=90.11  Aligned_cols=46  Identities=30%  Similarity=0.710  Sum_probs=38.8

Q ss_pred             cCccccccccccCceE-cccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          206 ELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       206 ~l~C~IC~~~~~~Pv~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      .-.||||++.+.+|+. ++|||+||..|+.+|+           .....||+||.++.
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~-----------~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWI-----------RQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH-----------HHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHH-----------HhCCcCCCCCcchH
Confidence            3459999999988765 7999999999999998           23468999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.11  E-value=1.9e-11  Score=81.99  Aligned_cols=49  Identities=35%  Similarity=0.676  Sum_probs=39.9

Q ss_pred             CCccCccccccccccC---ceEc-ccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCcc
Q 044708          203 LDIELTCPVCLETVFD---PVSL-TCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASV  262 (313)
Q Consensus       203 ~~~~l~C~IC~~~~~~---Pv~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~  262 (313)
                      ++++..|+||++.+.+   .+.+ +|||.||..|+.+|+           .....||+||.++.
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl-----------~~~~~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHH-----------HhCCcCCCCCCEeE
Confidence            4577889999999874   3445 599999999999998           44568999999764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.8e-11  Score=80.22  Aligned_cols=47  Identities=30%  Similarity=0.719  Sum_probs=36.7

Q ss_pred             CccccccccccC----ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          207 LTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       207 l~C~IC~~~~~~----Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      +.||||++.+..    ++.++|||.||..|+.+|+.          .....||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~----------~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTT----------TSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHh----------hcCCCCCccCCcCCC
Confidence            469999998753    33458999999999999972          334579999998753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.4e-09  Score=83.61  Aligned_cols=55  Identities=20%  Similarity=0.373  Sum_probs=40.1

Q ss_pred             CccCccccccccccCc------------------eEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccch
Q 044708          204 DIELTCPVCLETVFDP------------------VSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVFM  264 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~P------------------v~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~  264 (313)
                      ..+..|+||++.+.++                  +.++|||.||..||..|+...      ...+...||+||..+...
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~------~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG------NKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT------CCSSCCBCTTTCCBSSSC
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhc------CcCCCCccccccchhccC
Confidence            3456799999987543                  346899999999999998321      113456899999887543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.7e-09  Score=75.49  Aligned_cols=45  Identities=24%  Similarity=0.542  Sum_probs=35.2

Q ss_pred             ccccccccccC------------------ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          208 TCPVCLETVFD------------------PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       208 ~C~IC~~~~~~------------------Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      .|+||++.+.+                  ++.++|||.|+..||.+|+           .....||+||++...
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHH-----------HHCCcCCCCCCcccc
Confidence            48888766543                  2446899999999999998           445689999998764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.54  E-value=2.1e-08  Score=67.97  Aligned_cols=51  Identities=14%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             CccCccccccccccCceEccc-----CCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcCCccc
Q 044708          204 DIELTCPVCLETVFDPVSLTC-----GHILCKMCACSAASVSIVDGLKLADPREKCPLCRQASVF  263 (313)
Q Consensus       204 ~~~l~C~IC~~~~~~Pv~l~C-----gH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~  263 (313)
                      ++...|+||++.+.++...+|     +|.|+..||..|+..         .+...||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~---------~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh---------CCCCCCcccCCeeec
Confidence            467789999999888877665     599999999999831         234689999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.2e-07  Score=66.86  Aligned_cols=51  Identities=22%  Similarity=0.492  Sum_probs=36.2

Q ss_pred             cCcccccccccc--C-ceEcccCCcchHHHHHHhhhhhhhccccCCCCCCCCCCCcC
Q 044708          206 ELTCPVCLETVF--D-PVSLTCGHILCKMCACSAASVSIVDGLKLADPREKCPLCRQ  259 (313)
Q Consensus       206 ~l~C~IC~~~~~--~-Pv~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~Cr~  259 (313)
                      ...|+||++.+.  + +..++|||.||..|+..|+.....++   ......||.|.-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~---~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcC---CccccCCcCCCC
Confidence            567999998774  3 44558999999999999985433222   133568998654

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.07  Score=35.54  Aligned_cols=34  Identities=26%  Similarity=0.593  Sum_probs=27.8

Q ss_pred             ccCccccccccccCceEccc----CCcchHHHHHHhhh
Q 044708          205 IELTCPVCLETVFDPVSLTC----GHILCKMCACSAAS  238 (313)
Q Consensus       205 ~~l~C~IC~~~~~~Pv~l~C----gH~FC~~Cl~~~~~  238 (313)
                      ..+.|.+|.+-+.|.....|    +|.||..|-...+.
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence            35889999999998766544    69999999988774