Citrus Sinensis ID: 045274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHccEEEEEEEEcccEEEEEEEEcccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEcccccccHHHHHHHHHHHccccHHHHHHHHcccccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHccEEEEEccccccEEEEEEEcccccccEEEEcEEEEEcccccccccc
Coil and Loop (DISEMBL)
mavravnscsmfrsaacpplvsfkiQCCYYHFRSLQlrrksnlgfrlpacrserqflnrsgsqscsvHSLVDSVMQELVAIRKRLRVFAKVKvssgelledKLENQVLQKGLLLEFKKDSDRVLLAVAqrpdgkknwMVYDQVLVEtpnaacslgc
Flexible Loop (DISEMBL)
mavravnscsmfrsaACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFlnrsgsqscsvHSLVDSVMQELVAIRKRLRVFAKVKvssgelledkleNQVLQKGLllefkkdsdRVLLAvaqrpdgkknwMVYDQVLVetpnaacslgc
Low Complexity Region (SEG)
MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Disordered region (IsUnstruct)
*******SCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLN*****SCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPN*******
Disordered Region (DISOPRED)
********CSMFRSAACPPLVSFKIQCCYYHFRS*************PACRSERQFLNRSGSQSCSVHSLVDSVMQ*****************************QVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Disordered Region (DISEMBL)
********CSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQF***********HSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Disordered Region (DISPRO)
*AVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q6NQJ6	803	Ribonuclease II, chloropl	yes	no	0.897	0.174	0.525	5e-32
P73177	666	Uncharacterized ribonucle	N/A	no	0.217	0.051	0.542	0.0007

>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 14/154 (9%)

Query: 1   MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
           M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct: 2   MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query: 58  NRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQVL 108
             S + SCS  +HSLV+SV +EL +I +R    +RV A VKV   S GE+LEDKL NQ L
Sbjct: 60  GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query: 109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct: 120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153

3'-5' exoribonuclease that catalyzes 3' maturation of chloroplast and mitochondrion ribosomal RNAs; degrades short nucleotidic extensions to generate the mature 3'-ends. Involved in the maturation of 23S, 16S and 5S rRNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 1

>sp|P73177|RN2H_SYNY3 Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 108 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           ++KG L+EF+   +R  LAV  RPDGKK+W+V DQ
Sbjct: 1   MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQ 34

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
225440376	792	PREDICTED: uncharacterized ribonuclease	0.897	0.176	0.634	1e-45
147810722	754	hypothetical protein VITISV_026278 [Viti	0.897	0.185	0.634	2e-45
255586753	731	ribonuclease II, putative [Ricinus commu	0.878	0.187	0.561	8e-33
42567593	803	Ribonuclease II/R family protein [Arabid	0.897	0.174	0.525	3e-30
7406421	782	ribonuclease II-like protein [Arabidopsi	0.897	0.179	0.525	3e-30
297806163	803	EMB2730 [Arabidopsis lyrata subsp. lyrat	0.897	0.174	0.512	5e-29
224090693	792	predicted protein [Populus trichocarpa]	0.891	0.175	0.503	6e-28
449448900	809	PREDICTED: ribonuclease II, chloroplasti	0.820	0.158	0.476	5e-27
449520221	809	PREDICTED: LOW QUALITY PROTEIN: ribonucl	0.820	0.158	0.469	2e-26
356566110	783	PREDICTED: uncharacterized ribonuclease	0.801	0.159	0.506	2e-22

>gi|225440376|ref|XP_002266667.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 114/145 (78%), Gaps = 5/145 (3%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS 60
           MAVRAVN+CS+FRS + PPL  F+  C  +HF + Q +   NLG   P CR++R FL+  
Sbjct: 1   MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCKSYPNLGLHFPICRTDRVFLSHG 58

Query: 61  GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEFK 117
           G QSCSV+SLV+SVM+EL A RKR R++A  K+   SSG+LLEDKL+NQVLQKGLLLEF+
Sbjct: 59  GVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEFR 118

Query: 118 KDSDRVLLAVAQRPDGKKNWMVYDQ 142
           KDS+RVLLAVAQ+ DGKKNWMV+DQ
Sbjct: 119 KDSERVLLAVAQKADGKKNWMVFDQ 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 114/145 (78%), Gaps = 5/145 (3%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS 60
           MAVRAVN+CS+FRS + PPL  F+  C  +HF + Q +   NLG   P CR++R FL+  
Sbjct: 351 MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCKSYPNLGLHFPICRTDRXFLSHG 408

Query: 61  GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEFK 117
           G QSCSV+SLV+SVM+EL A RKR R++A  K+   SSG+LLEDKL+NQVLQKGLLLEF+
Sbjct: 409 GVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEFR 468

Query: 118 KDSDRVLLAVAQRPDGKKNWMVYDQ 142
           KDS+RVLLAVAQ+ DGKKNWMV+DQ
Sbjct: 469 KDSERVLLAVAQKADGKKNWMVFDQ 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586753|ref|XP_002533996.1| ribonuclease II, putative [Ricinus communis] gi|223526007|gb|EEF28385.1| ribonuclease II, putative [Ricinus communis]

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 106/146 (72%), Gaps = 9/146 (6%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQF-LNR 59
           MAVRAVN+CS+   +  PP   F ++C    F++L+  + SNL  R P  R E QF  + 
Sbjct: 2   MAVRAVNTCSILHFSKAPPF--FLVRC---RFKTLRFCQYSNLSSRRPIIRCESQFQFHG 56

Query: 60  SGSQSCSVHSLVDSVMQELVAIRK--RLRVFAKVKVS-SGELLEDKLENQVLQKGLLLEF 116
           +  +S SV SLVDSVM+EL ++RK  R RV   +K++ SGELL+DKL N+ L+KGLLLEF
Sbjct: 57  TNIRSFSVQSLVDSVMEELASLRKSRRKRVCPAIKLTGSGELLDDKLVNRPLEKGLLLEF 116

Query: 117 KKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           KKD+DR+LLAVA+RPDGKKNWMVYDQ
Sbjct: 117 KKDTDRILLAVARRPDGKKNWMVYDQ 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567593|ref|NP_195845.2| Ribonuclease II/R family protein [Arabidopsis thaliana] gi|75127176|sp|Q6NQJ6.1|RNR1_ARATH RecName: Full=Ribonuclease II, chloroplastic/mitochondrial; Short=AtmtRNaseII; Short=RNase II; AltName: Full=Protein EMBRYO DEFECTIVE 2730; AltName: Full=Ribonucleotide reductase 1; Flags: Precursor gi|34222082|gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana] gi|51970908|dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana] gi|332003067|gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 14/154 (9%)

Query: 1   MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
           M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct: 2   MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query: 58  NRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQVL 108
             S + SCS  +HSLV+SV +EL +I +R    +RV A VKV   S GE+LEDKL NQ L
Sbjct: 60  GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query: 109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct: 120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406421|emb|CAB85530.1| ribonuclease II-like protein [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 14/154 (9%)

Query: 1   MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
           M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct: 2   MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query: 58  NRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQVL 108
             S + SCS  +HSLV+SV +EL +I +R    +RV A VKV   S GE+LEDKL NQ L
Sbjct: 60  GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query: 109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct: 120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806163|ref|XP_002870965.1| EMB2730 [Arabidopsis lyrata subsp. lyrata] gi|297316802|gb|EFH47224.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 101/154 (65%), Gaps = 14/154 (9%)

Query: 1   MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
           ++VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S LG   P  RS R+ L
Sbjct: 2   ISVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLGLNFPLLRSNRRSL 59

Query: 58  NRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQVL 108
             + + SCS  +HSLV+SV +EL +I +R    +RV A VKV   S GE+LEDKL NQ L
Sbjct: 60  GNNDAPSCSSCIHSLVESVSEELGSISRRKGSRIRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query: 109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           + GLLLEFKKD++RVLLAV  R DGKKNWMV+DQ
Sbjct: 120 EAGLLLEFKKDAERVLLAVVHRRDGKKNWMVFDQ 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090693|ref|XP_002309062.1| predicted protein [Populus trichocarpa] gi|222855038|gb|EEE92585.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 100/149 (67%), Gaps = 10/149 (6%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFR----SLQLRRKSNLGFRLPACRSERQF 56
           ++VRAVNSCS+FRS+  PP+ SF+ +    H R    S    R S  GF  P  R +   
Sbjct: 2   ISVRAVNSCSIFRSS--PPVSSFRCRLNS-HLRTTTSSSHHDRYSKSGFGFPVFRFDLPI 58

Query: 57  LNRSGSQSCSVHSLVDSVMQELVAIRKRLR--VFAKVKVSSG-ELLEDKLENQVLQKGLL 113
           L     +S S+ S VD+V++EL + RKR R  + + +K+++G E L+DKL NQ ++KGLL
Sbjct: 59  LGHGDVRSYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTGGEALDDKLVNQAVEKGLL 118

Query: 114 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           +EFKKDS+RVLLAV QR DGKKNWMVYDQ
Sbjct: 119 VEFKKDSERVLLAVVQRRDGKKNWMVYDQ 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448900|ref|XP_004142203.1| PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/147 (47%), Positives = 90/147 (61%), Gaps = 19/147 (12%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS 60
           MA R VN+ S+FRS+  PPL +F              R  S L F  P  R   Q     
Sbjct: 27  MAFRTVNTFSVFRSSLSPPLSAF--------------RWSSKLRFSSPLLRHRYQIFKTG 72

Query: 61  GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLLLE 115
           G +  S +S+ +++++EL A R+R RV A  K+      SGE+ EDKL N+ L +GLLLE
Sbjct: 73  GGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLLLE 132

Query: 116 FKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           FKKDS+RVLLAVAQ+PDGKKNWMV+DQ
Sbjct: 133 FKKDSERVLLAVAQKPDGKKNWMVFDQ 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520221|ref|XP_004167132.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease II, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 89/147 (60%), Gaps = 19/147 (12%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS 60
           MA R VN+ S+FRS+  PPL +F              R  S L F  P  R   Q     
Sbjct: 27  MAFRTVNTFSVFRSSLSPPLSAF--------------RWSSKLRFSSPLLRHRYQIFKTG 72

Query: 61  GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLLLE 115
           G +  S +S+ +++++EL A R+R RV A  K+      SGE+ EDKL N+ L +GLLLE
Sbjct: 73  GGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLLLE 132

Query: 116 FKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           FKKDS+RVLLAVAQ+PDG KNWMV+DQ
Sbjct: 133 FKKDSERVLLAVAQKPDGXKNWMVFDQ 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566110|ref|XP_003551278.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Glycine max]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 92/148 (62%), Gaps = 23/148 (15%)

Query: 1   MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS 60
           MAVRAV SCS+FR ++ PPL S  ++  ++ +RS   R   +L  R  A           
Sbjct: 2   MAVRAVTSCSLFRPSS-PPLFSSALR--FFPYRS---RGPPSLSLRYGAH---------- 45

Query: 61  GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSS------GELLEDKLENQVLQKGLLL 114
            +Q+ SV SL +S+M+EL A RKR +       S+       EL ED+L N  LQKGLLL
Sbjct: 46  -TQTRSVQSLFNSLMEELRAARKRRQKRVSAAASNRMGLLNEELAEDRLVNHSLQKGLLL 104

Query: 115 EFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           EFKKDSDRVLLAVAQRPDGKKNWMV DQ
Sbjct: 105 EFKKDSDRVLLAVAQRPDGKKNWMVSDQ 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2180172	803	EMB2730 "EMBRYO DEFECTIVE 2730	0.897	0.174	0.538	9.1e-30

TAIR|locus:2180172 EMB2730 "EMBRYO DEFECTIVE 2730" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 9.1e-30, P = 9.1e-30
 Identities = 83/154 (53%), Positives = 103/154 (66%)

Query:     1 MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
             M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct:     2 MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query:    58 NRSGSQSCS--VHSLVDSVMQELVAI--RK--RLRVFAKVKV---SSGELLEDKLENQVL 108
               S + SCS  +HSLV+SV +EL +I  RK  R+RV A VKV   S GE+LEDKL NQ L
Sbjct:    60 GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query:   109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
             + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct:   120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       156   0.00073  106 3  11 22  0.41    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.81u 0.08s 15.89t   Elapsed:  00:00:01
  Total cpu time:  15.81u 0.08s 15.89t   Elapsed:  00:00:01
  Start:  Sat May 11 09:28:23 2013   End:  Sat May 11 09:28:24 2013

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0004540 "ribonuclease activity" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA;IMP

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	EMB2730	EMB2730 (EMBRYO DEFECTIVE 2730); 3'-5'-exoribonuclease/ RNA binding / ribonuclease; Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis. (803 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RIF10	RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid [...] (922 aa)				•			•		0.746
	AT2G32320	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (537 aa)							•		0.679
	AT2G31580	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (567 aa)							•		0.679
	AT5G14580	polyribonucleotide nucleotidyltransferase, putative; polyribonucleotide nucleotidyltransferase, [...] (991 aa)							•		0.677
	AT5G02240	binding / catalytic/ coenzyme binding; Protein is tyrosine-phosphorylated and its phosphorylati [...] (253 aa)							•		0.621
	SAE1A	SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme; Encodes one of the two subunits of t [...] (322 aa)							•		0.599
	RNL	RNL (RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotid [...] (1104 aa)							•		0.565
	SAE2	SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme; Encodes one of the two subunits of the [...] (700 aa)							•		0.563
	AT1G77680	ribonuclease II family protein; ribonuclease II family protein; FUNCTIONS IN- ribonuclease acti [...] (1055 aa)			•				•	•	0.558
	AT5G02710	unknown protein; unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; E [...] (176 aa)	•			•					0.549

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00