Citrus Sinensis ID: 045520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLRSENGL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccEEEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHcccccccccccccccccccccccHHcccccccccccccEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEHHcEEEEccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHccccccccccccccccccHHHHHccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mewngitskkkgqkwgrdkaafSKKSIYEnfdqfsempsfekeisigkdmefeklppyislpkegDVIAYRLIEltsswtpepssfrvgkiswydsdtnkillapvpeyplafekktdenvsalqsetlygedgslridFSLLLDVRIIKHgekanevhvgdqdfvtnfnevhlgdqdvvmnfnvhvgdrdvvmnlrddrkhgkahapaqgngevrlgdqdavsnvrdnsnkekspahtqengklNAWEEINLALSAKKAelshvddqsakerskqssghrlsykalrssalgptmaflrsengl
Flexible Loop (DISEMBL)
mewngitskkkgqkwgrdkaAFSKKSIyenfdqfsempSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIEltsswtpepssfRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSetlygedgslRIDFSLLLDVRIIKHGEkanevhvgdqDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHgkahapaqgngevrlgdQDAVSNVrdnsnkekspahtqengklnAWEEINLALSAKKAElshvddqsakerskqssghrlsykalrssalgptmaflrsengl
Low Complexity Region (SEG)
MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLRSENGL
Disordered region (IsUnstruct)
*********************************************IG*DMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNL*************************************************************************************************************
Disordered Region (DISOPRED)
***************************************************FEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPE********************LYGEDGSLRIDFSLLLDVR*******************************************************************************************************************************************LRSSALGPTMAFLRSE***
Disordered Region (DISEMBL)
*******************AAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDD*********AQGNGEVRLGDQDAVSN****************NGKLNAWEEINLALSAKK************************YKALRSSALGPTMAFLRSENGL
Disordered Region (DISPRO)
***********************************************KDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFE*******SALQSETLYGEDGSLRIDFSLLLDVRIIKH*********************************************************************************************LNAWEEINLALSAKKAEL*********************YKALRSSALGPTMAFLRSE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLRSENGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
296081372	652	unnamed protein product [Vitis vinifera]	0.914	0.427	0.459	2e-58
359473153	757	PREDICTED: uncharacterized protein LOC10	0.914	0.368	0.459	2e-58
356569223	543	PREDICTED: uncharacterized protein LOC10	0.888	0.499	0.442	2e-54
224110852	746	predicted protein [Populus trichocarpa]	0.819	0.335	0.421	6e-52
224102415	479	predicted protein [Populus trichocarpa]	0.809	0.515	0.437	8e-51
449435416	612	PREDICTED: uncharacterized protein LOC10	0.819	0.408	0.393	4e-49
356540235	352	PREDICTED: uncharacterized protein LOC10	0.885	0.767	0.448	1e-48
255578367	607	conserved hypothetical protein [Ricinus	0.816	0.410	0.426	1e-48
357463229	782	hypothetical protein MTR_3g086550 [Medic	0.855	0.333	0.414	2e-44
4850386	547	F3F19.5 [Arabidopsis thaliana]	0.803	0.447	0.390	1e-38

>gi|296081372|emb|CBI16805.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/309 (45%), Positives = 192/309 (62%), Gaps = 30/309 (9%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKKSIYENFD-QFSEMPSFEKEISIGKDMEFEKLPPYI 59
            +WNG TSKKKGQKWG++K +  +++ Y++F+ Q SE  + E+       M+F+KLP   
Sbjct: 370 FQWNGTTSKKKGQKWGKEKMS-CRRNDYKDFNQQHSETFAVEEGTPPKDPMDFDKLPSLT 428

Query: 60  SLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDE 119
           S PKEGD+IAYRLIEL+S+WTPE S+FRVGKIS YD ++NK++L  VPE P+  E + DE
Sbjct: 429 SSPKEGDMIAYRLIELSSTWTPELSTFRVGKISSYDPESNKLILISVPESPIVAETRIDE 488

Query: 120 NVSALQSE---TLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGD 176
           + SAL+ +   +LY EDGSL IDFS L+DVRIIK G                    HL +
Sbjct: 489 DASALEPDPDTSLYREDGSLEIDFSSLIDVRIIKSGNS------------------HL-E 529

Query: 177 QDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSP 236
           + V       V  +D V  ++ + K+        G GE+ +  Q +V+ V  N N+E + 
Sbjct: 530 KAVTARVEAPVDTQDAVSGVKPNNKNSGMSTSLPG-GELNI-TQVSVAGVEHNINREMT- 586

Query: 237 AHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTM 296
           A   ENGK+NAW+EI+  LSAKKA+LS  D  S KE   +S     SYKALR SALGPTM
Sbjct: 587 APPPENGKVNAWDEIDKVLSAKKAQLSQEDGSSKKESPGRSP---WSYKALRGSALGPTM 643

Query: 297 AFLRSENGL 305
           +FLR++N  
Sbjct: 644 SFLRAQNNF 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473153|ref|XP_002282307.2| PREDICTED: uncharacterized protein LOC100256103 [Vitis vinifera]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/309 (45%), Positives = 192/309 (62%), Gaps = 30/309 (9%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKKSIYENFD-QFSEMPSFEKEISIGKDMEFEKLPPYI 59
            +WNG TSKKKGQKWG++K +  +++ Y++F+ Q SE  + E+       M+F+KLP   
Sbjct: 475 FQWNGTTSKKKGQKWGKEKMS-CRRNDYKDFNQQHSETFAVEEGTPPKDPMDFDKLPSLT 533

Query: 60  SLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDE 119
           S PKEGD+IAYRLIEL+S+WTPE S+FRVGKIS YD ++NK++L  VPE P+  E + DE
Sbjct: 534 SSPKEGDMIAYRLIELSSTWTPELSTFRVGKISSYDPESNKLILISVPESPIVAETRIDE 593

Query: 120 NVSALQSE---TLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGD 176
           + SAL+ +   +LY EDGSL IDFS L+DVRIIK G                    HL +
Sbjct: 594 DASALEPDPDTSLYREDGSLEIDFSSLIDVRIIKSGNS------------------HL-E 634

Query: 177 QDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSP 236
           + V       V  +D V  ++ + K+        G GE+ +  Q +V+ V  N N+E + 
Sbjct: 635 KAVTARVEAPVDTQDAVSGVKPNNKNSGMSTSLPG-GELNI-TQVSVAGVEHNINREMT- 691

Query: 237 AHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTM 296
           A   ENGK+NAW+EI+  LSAKKA+LS  D  S KE   +S     SYKALR SALGPTM
Sbjct: 692 APPPENGKVNAWDEIDKVLSAKKAQLSQEDGSSKKESPGRSP---WSYKALRGSALGPTM 748

Query: 297 AFLRSENGL 305
           +FLR++N  
Sbjct: 749 SFLRAQNNF 757

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569223|ref|XP_003552804.1| PREDICTED: uncharacterized protein LOC100806262 [Glycine max]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/307 (44%), Positives = 182/307 (59%), Gaps = 36/307 (11%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYIS 60
            +WNGIT+KKKGQKWG+++  F K+  YE+  Q        ++      ++F+KL  Y S
Sbjct: 271 FQWNGITNKKKGQKWGKERMPFRKQDGYEDSGQDCPTVQNAEKEQTSNVIDFDKLKHYTS 330

Query: 61  LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDEN 120
           LPKEGDVIAYRLIELT+SWTPE SSFRVGKIS YD+ +N+I L PV EYP  F+KK DE+
Sbjct: 331 LPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKIDED 390

Query: 121 VSALQSE-TLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDV 179
            S++Q + + Y EDGSL I+++LL DVR++KHG             + +         D 
Sbjct: 391 ASSVQYDPSPYQEDGSLEIEYTLLADVRMVKHG-------------IPDLK------SDA 431

Query: 180 VMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHT 239
           ++N      D   + N +       A A     GE   GDQ  V +     + E+     
Sbjct: 432 LVNPTKATND---ITNEK-----LAAKAINGSTGEKLAGDQTTVGSC----HPERGHITA 479

Query: 240 QENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHR-LSYKALRSSALGPTMAF 298
           +ENG++N W++IN AL AKKA+LS  D  S   R  +SS  R  S++A+R SALGPTMA 
Sbjct: 480 KENGEVNVWDKINEALKAKKAKLSQEDCWS---RGGESSSTRSWSHRAMRCSALGPTMAL 536

Query: 299 LRSENGL 305
           LRS NGL
Sbjct: 537 LRSNNGL 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110852|ref|XP_002315658.1| predicted protein [Populus trichocarpa] gi|222864698|gb|EEF01829.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/313 (42%), Positives = 171/313 (54%), Gaps = 63/313 (20%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKKSIYENF--DQFSEMPSFEKEISIGKDMEFEKLPPY 58
            +WNGITSKKKGQKWG++K    K++ Y NF  + +S + + E++  +     FE+ P Y
Sbjct: 489 FQWNGITSKKKGQKWGKEKVVSCKRNDYNNFKKESYSSL-TIEEQTPVYDCTNFEEFPLY 547

Query: 59  ISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTD 118
            SLPKEGDVIAYRL+EL+SSWTPE SS+RVGK+S YD ++N ++LA VPEYP+  EK  D
Sbjct: 548 ASLPKEGDVIAYRLVELSSSWTPELSSYRVGKVSKYDLESNIVMLAQVPEYPVIPEKIDD 607

Query: 119 ENVSALQSETLYGEDGSLR----IDFSLLLDVRIIKHG--EKANEVHVGDQDFVTNFNEV 172
           E   AL   + Y +DGSL     I FS L +VR++ HG  + A  V  G        NEV
Sbjct: 608 EASDALPETSPYQDDGSLEVGVSIKFSALFEVRLVHHGNIKSAKSVTGGS-------NEV 660

Query: 173 HLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNK 232
           H+ DQD    F ++                                            N 
Sbjct: 661 HVRDQDSGTGFKLN--------------------------------------------NN 676

Query: 233 EKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSAL 292
            ++    QENGK N WEE N AL+A+KA LS  D     E S +S     SYKALR SAL
Sbjct: 677 HEAGTSAQENGKHNPWEETNQALTAQKAWLSQEDSCKKPESSGRSP---WSYKALRGSAL 733

Query: 293 GPTMAFLRSENGL 305
           GPT+A LR++N L
Sbjct: 734 GPTVALLRAQNEL 746

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102415|ref|XP_002312668.1| predicted protein [Populus trichocarpa] gi|222852488|gb|EEE90035.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 169/304 (55%), Gaps = 57/304 (18%)

Query: 3   WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEK-EISIGKDMEFEKLPPYISL 61
           WNGITSKKKGQKWG++KA   K++ Y NF + S      + +  +     FE+LP Y SL
Sbjct: 228 WNGITSKKKGQKWGKEKAVSCKRNDYNNFRKESSSSLSIEEQTPVYDCTNFEELPLYASL 287

Query: 62  PKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENV 121
           PKEGDVIAYR++EL+ SWTPE SS+RVGKIS YD ++N ++L  VP YP+  EK  DE  
Sbjct: 288 PKEGDVIAYRVVELSLSWTPELSSYRVGKISKYDLESNIVILVQVPGYPVVPEKIDDEAS 347

Query: 122 SALQSETLYGEDGSLRIDFSLLLDVRIIKHG--EKANEVHVGDQDFVTNFNEVHLGDQDV 179
           +AL   + YGEDGSL I FS L +VR+++HG  E A  +       V+  NEVH+ DQD 
Sbjct: 348 AALPETSPYGEDGSLEIKFSTLHEVRLVRHGNLESAKSI-------VSGSNEVHVRDQD- 399

Query: 180 VMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHT 239
                                  G   +P                    N+N E + +  
Sbjct: 400 ----------------------SGTGFSP--------------------NNNHEANTS-A 416

Query: 240 QENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFL 299
           QEN K N WEEIN AL+AKK  LS  D     E S +S     SYKALR S+LG TMA L
Sbjct: 417 QENEKRNPWEEINQALTAKKELLSQEDGWKKTESSSRSP---WSYKALRGSSLGRTMALL 473

Query: 300 RSEN 303
           R++N
Sbjct: 474 RAQN 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435416|ref|XP_004135491.1| PREDICTED: uncharacterized protein LOC101214537 [Cucumis sativus]

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 169/310 (54%), Gaps = 60/310 (19%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKK-----SIYENFDQFSEMPSFEKEISIGKDMEFEKL 55
           + WNGIT+KKKGQKWG++K    K+        E     SE    +  + +   + F++L
Sbjct: 358 LHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSINFDEL 417

Query: 56  PPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEK 115
            PY  LP+EGD+IAYRLIEL+S+WTPE SSFR GK+SWYD+++N+I+L PVPEYPL  +K
Sbjct: 418 RPYTGLPQEGDLIAYRLIELSSTWTPEISSFRAGKVSWYDTESNRIMLIPVPEYPLPVKK 477

Query: 116 KTDENVSALQSETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLG 175
           + DE+       T YGEDGSL+IDF+ L+D+RII+ G   +     +Q+  +        
Sbjct: 478 EIDEDSELQPDTTPYGEDGSLKIDFASLVDLRIIRQGNLDSSRTAVNQEITSK------- 530

Query: 176 DQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKS 235
               +   + HV +     N R            QGN                       
Sbjct: 531 ---QIAESSKHVHNNVDANNTR------------QGN----------------------- 552

Query: 236 PAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPT 295
                  GK++AW+EI+ ALSAKK ELS  +  + ++ S + S    SY+ALR SALGPT
Sbjct: 553 -------GKVSAWDEISEALSAKKVELSKNNGWNQEDSSGRKS---WSYRALRGSALGPT 602

Query: 296 MAFLRSENGL 305
           MA LRS+  L
Sbjct: 603 MALLRSQKEL 612

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540235|ref|XP_003538595.1| PREDICTED: uncharacterized protein LOC100776892 [Glycine max]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/310 (44%), Positives = 191/310 (61%), Gaps = 40/310 (12%)

Query: 3   WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSF---EKEISIGKDMEFEKLPPY- 58
           WNGIT+KKKGQKWG+++ +F K+  YE+  Q  + P+    EKE      ++F+KL PY 
Sbjct: 76  WNGITNKKKGQKWGKERMSFRKQDGYEHSSQ--DCPTVRNAEKE-QPSNAIDFDKLKPYY 132

Query: 59  ISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTD 118
            SLPKEGDVIAYRLIELT+SWTPE SSFRVGKIS YD+ +N+I L PV EYP  F+KK D
Sbjct: 133 TSLPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKID 192

Query: 119 ENVSALQ-SETLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQ 177
           E+ S++Q + + Y E+GSL I+++ L DVR++KH         G+ D  T          
Sbjct: 193 EDASSVQYNPSPYQENGSLEIEYTSLADVRMVKH---------GNPDLKT---------- 233

Query: 178 DVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRL-GDQDAVSNVRDNSNKEKSP 236
            VV++ +  V       ++  ++   KA     G+ + +L  DQ  + + +     E+  
Sbjct: 234 -VVVSSDAWVKTTKATNDITKEKLAAKA---TNGSTDEKLAADQTTMGSCQ----PERGH 285

Query: 237 AHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHR-LSYKALRSSALGPT 295
              +ENG++N W+EIN AL AKKA+LS  D  S   R  +SS  R  S++A+R SALGPT
Sbjct: 286 ITAKENGEVNVWDEINEALKAKKAKLSKEDGWS---RGGESSSTRSWSHRAMRCSALGPT 342

Query: 296 MAFLRSENGL 305
           MA LRS NGL
Sbjct: 343 MALLRSNNGL 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578367|ref|XP_002530050.1| conserved hypothetical protein [Ricinus communis] gi|223530466|gb|EEF32350.1| conserved hypothetical protein [Ricinus communis]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 173/305 (56%), Gaps = 56/305 (18%)

Query: 3   WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLP 62
           WNGITSKKKGQKWG++KA   K++ + N  Q       +    +   ++FEKL  Y +LP
Sbjct: 357 WNGITSKKKGQKWGKEKATSYKRNDHRNVSQECSEVRKDGGRPVYDRVDFEKLEFYTTLP 416

Query: 63  KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVS 122
           KEGDVIAYRLIEL+ SWTPE SS+RVGKIS YD  +N++ L PVP YP+   K+T ++ S
Sbjct: 417 KEGDVIAYRLIELSPSWTPEISSYRVGKISRYDMQSNRVRLVPVPGYPVTH-KETGDDAS 475

Query: 123 ALQSETL-YGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVM 181
           A  SET+ Y +DGSL I+F+ L++VR++  G  +N V    +      ++V + DQD   
Sbjct: 476 AAPSETIPYAKDGSLWIEFASLIEVRLVTRG-NSNSV----KSVAGEIDKVPVRDQDNRT 530

Query: 182 NFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQE 241
               + G+              ++H  AQ                              E
Sbjct: 531 GCRSNNGN--------------ESHVSAQ------------------------------E 546

Query: 242 NGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHR-LSYKALRSSALGPTMAFLR 300
           NGK NAWEEI+ AL+AKKAEL+  D+ +       SSG R  SYKALR SALGPTMA LR
Sbjct: 547 NGKGNAWEEISEALNAKKAELAQEDNWN----KPGSSGRRPWSYKALRGSALGPTMALLR 602

Query: 301 SENGL 305
           ++N L
Sbjct: 603 AQNEL 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463229|ref|XP_003601896.1| hypothetical protein MTR_3g086550 [Medicago truncatula] gi|355490944|gb|AES72147.1| hypothetical protein MTR_3g086550 [Medicago truncatula]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 163/311 (52%), Gaps = 50/311 (16%)

Query: 1   MEWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYIS 60
           ++WNG  SK   QKWG++K +  K+   E   Q         +      ++FEKL PY  
Sbjct: 514 VQWNGTISK--DQKWGKEKTSAHKQDDCEQSSQDRPTDQNAGKKRTFDAVDFEKLTPYTD 571

Query: 61  LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKK---T 117
           LPKEG+VIAYRLIEL+ SWTPE SSFRVGK + YDS +N+I L PV E+P  F KK    
Sbjct: 572 LPKEGNVIAYRLIELSESWTPELSSFRVGKTTQYDSKSNRIWLQPVSEFPFDFWKKIDDM 631

Query: 118 DENVSALQSE-TLYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGD 176
           DE+ S  QS+ + Y EDGSL ID++ L DVRIIKHG           D  T         
Sbjct: 632 DEDGSPSQSDPSPYQEDGSLEIDYASLADVRIIKHGH---------SDLAT--------- 673

Query: 177 QDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSP 236
             VV + +  V       N  D++       PA  + E   G           S+K +  
Sbjct: 674 --VVAHSDAFVTPTKATNNSTDEK-------PA--DNETAAG-----------SSKPQIE 711

Query: 237 AH--TQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGP 294
            H   +ENG++N W+EIN AL AKK  LS  D    K+    S     S +ALR SALGP
Sbjct: 712 GHVTAKENGEVNVWDEINEALKAKKTRLSQED--RWKKEGDSSENRSWSQRALRCSALGP 769

Query: 295 TMAFLRSENGL 305
           TMA LRS+NG 
Sbjct: 770 TMALLRSQNGF 780

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4850386|gb|AAD31056.1|AC007357_5 F3F19.5 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 161/305 (52%), Gaps = 60/305 (19%)

Query: 3   WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLP 62
           WNG  +KKKGQKWG +K+ FSK+   ++F++ +     E E      +++E+L  Y    
Sbjct: 301 WNGNMTKKKGQKWGTEKSGFSKR-YAQDFNEDATTQPAEAETLANCPIDYEQLVAYTGSV 359

Query: 63  KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVS 122
           K+GDVIAYRLIELTSSWTPE SSFRVGKIS+YD D+  + L PV E+P+  EKKT+E+  
Sbjct: 360 KKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPI--EKKTEEDDD 417

Query: 123 -ALQSET-LYGEDGSLRIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVV 180
             +Q +T LY EDGSL I+FS LLDVR +K    ++   V      +   E     +   
Sbjct: 418 FCMQPDTSLYKEDGSLEIEFSALLDVRSVKTS-SSDSAEVAK----SALPEPDQSAKKPK 472

Query: 181 MNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQ 240
           ++ N  +                    PA+ NGEV                   SP    
Sbjct: 473 LSANKEL------------------QTPAKENGEV-------------------SP---- 491

Query: 241 ENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLR 300
                  WEE++ ALSAKKA LS  ++   K+ S        SYKALR SA+GP M +LR
Sbjct: 492 -------WEELSEALSAKKAALSQANNGWNKKGSSSGGSW--SYKALRGSAMGPVMNYLR 542

Query: 301 SENGL 305
           S+  +
Sbjct: 543 SQKEI 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2031810	608	COILIN "coilin" [Arabidopsis t	0.475	0.238	0.533	8.7e-50
UNIPROTKB|F1RSD6	571	COIL "Uncharacterized protein"	0.485	0.259	0.257	0.00032
UNIPROTKB|F1MEL4	571	COIL "Uncharacterized protein"	0.485	0.259	0.245	0.00041
UNIPROTKB|E2RKJ9	578	COIL "Uncharacterized protein"	0.481	0.254	0.256	0.00054

TAIR|locus:2031810 COILIN "coilin" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 8.7e-50, Sum P(2) = 8.7e-50
 Identities = 80/150 (53%), Positives = 105/150 (70%)

Query:     3 WNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLP 62
             WNG  +KKKGQKWG +K+ FSK+   ++F++ +     E E      +++E+L  Y    
Sbjct:   362 WNGNMTKKKGQKWGTEKSGFSKRYA-QDFNEDATTQPAEAETLANCPIDYEQLVAYTGSV 420

Query:    63 KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVS 122
             K+GDVIAYRLIELTSSWTPE SSFRVGKIS+YD D+  + L PV E+P+  EKKT+E+  
Sbjct:   421 KKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPI--EKKTEEDDD 478

Query:   123 -ALQSET-LYGEDGSLRIDFSLLLDVRIIK 150
               +Q +T LY EDGSL I+FS LLDVR +K
Sbjct:   479 FCMQPDTSLYKEDGSLEIEFSALLDVRSVK 508

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0030619 "U1 snRNA binding" evidence=IDA

GO:0030620 "U2 snRNA binding" evidence=IDA

UNIPROTKB|F1RSD6 COIL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
 Identities = 42/163 (25%), Positives = 79/163 (48%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR  A     ++ + Y+   Q +EM +    I I   +E  K  
Sbjct:   397 LSWKGARGRGMRGRGRGRGPAGPCVLNRNAEYQKQQQLNEMVTNSSTI-IQNPVETRKRD 455

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ GD IA++L+ELTS + P+ S ++ GKI  ++ +T ++   +L+ +P 
Sbjct:   456 YSLLPLLAAAPQVGDKIAFKLLELTSDYFPDISDYKEGKILSHNPETQQVDIEILSSLPA 515

Query:   108 -EYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+        A   E    ++  + + +  L+D R+I
Sbjct:   516 MKEPGKFDLVYHNENGAEVVEYAVTQEKRITVFWRELIDPRLI 558

GO:0042802 "identical protein binding" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001674 "female germ cell nucleus" evidence=IEA

UNIPROTKB|F1MEL4 COIL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
 Identities = 40/163 (24%), Positives = 82/163 (50%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR  A     ++ + Y+   Q +EM +    I I   +E +K  
Sbjct:   403 LSWKGARGRGMRGRGRGRGHAVPYVLNRNADYQKQQQLNEMVTNSSTI-IQNPIETQKKD 461

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ G+ IA++L+ELTS+++P+ S ++ G+I  ++ +T ++   +L+ +P 
Sbjct:   462 YSLLPLLAAAPQVGEKIAFKLLELTSNYSPDVSDYKEGRILSHNPETQQVDIEILSSLPA 521

Query:   108 -EYPLAFEKKTDENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+        A   E    ++  + + +  L+D R+I
Sbjct:   522 MKEPGKFDLVYHNENGAEVVEYAVTQEKRITVLWRELIDPRLI 564

GO:0042802 "identical protein binding" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001674 "female germ cell nucleus" evidence=IEA

UNIPROTKB|E2RKJ9 COIL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
 Identities = 42/164 (25%), Positives = 85/164 (51%)

Query:     1 MEWNGITSK-KKGQKWGRDKAA---FSKKSIYENFDQFSEMPSFEKEISIGKDMEFEK-- 54
             + W G   +  +G+  GR +A     ++ + Y+   Q +EM +    I I   +E  K  
Sbjct:   404 LSWKGARGRGMRGRGRGRGQAVSFLLNRNAEYQKNQQLNEMVTNTSTI-IQNPIETHKKD 462

Query:    55 ---LPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKI---LLAPVP- 107
                LP   + P+ G+ IA++L+ELTS ++P+ S ++ GKI  ++ +T ++   +L+ +P 
Sbjct:   463 YSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHNPETQQVDIEILSSLPA 522

Query:   108 -EYPLAFEKKT-DENVSALQSETLYGEDGSLRIDFSLLLDVRII 149
              + P  F+    +EN + +  E    ++  + + +  L+D R+I
Sbjct:   523 MKEPGKFDLVYHNENGTEVV-EYAVTQEKRITVFWRELIDPRLI 565


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       305   0.00098  115 3  11 23  0.48    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.37u 0.17s 29.54t   Elapsed:  00:00:01
  Total cpu time:  29.37u 0.17s 29.54t   Elapsed:  00:00:01
  Start:  Thu May  9 16:18:55 2013   End:  Thu May  9 16:18:56 2013

GO:0042802 "identical protein binding" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001674 "female germ cell nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030745001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (314 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PF07039	130	DUF1325: SGF29 tudor-like domain; InterPro: IPR010	86.54

>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes

Probab=86.54  E-value=1.9  Score=36.83  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=28.9

Q ss_pred             CCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEE
Q 045520           63 KEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLA  104 (305)
Q Consensus        63 qvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le  104 (305)
                      |+||.+|||+-     ..-+=-+|..++|++|+..+++++++
T Consensus         1 q~G~~VAak~~-----~~~~~~~WIla~Vv~~~~~~~rYeV~   37 (130)
T PF07039_consen    1 QPGDQVAAKVK-----QGNEEEEWILAEVVKYNSDGNRYEVE   37 (130)
T ss_dssp             -TT-EEEEEEC-----TTTTTCEEEEEEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEcC-----CCCCCCCEEEEEEEEEeCCCCEEEEe
Confidence            68999999997     22222678999999999999888887

It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	81.41

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A

Probab=81.41  E-value=3.3  Score=36.39  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEEEeeeCCCCCCCCCceeeeEEeeeeCCCCeEEEEE
Q 045520           61 LPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAP  105 (305)
Q Consensus        61 ~PqvGDvIAfKLLELS~nYTPEVSsYKeGKVv~yDp~tk~I~Le~  105 (305)
                      ..++||.+|||+-.     .-+-.+|..++|++|+..+++++++=
T Consensus        44 ~~~~G~~VAakvk~-----~~~~~~WILa~Vv~~~~~~~rYeV~D   83 (180)
T 3mea_A           44 VARPGDKVAARVKA-----VDGDEQWILAEVVSYSHATNKYEVDD   83 (180)
T ss_dssp             CCCTTCEEEEEEEC-----CC--EEEEEEEEEEEETTTTEEEEEE
T ss_pred             ccCCCCEEEEEcCC-----CCCCccEEEEEEEEEcCCCCEEEEec
Confidence            47899999999642     12336899999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00