Citrus Sinensis ID: 046801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MAIISDFQEDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM
ccEEccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccccEEEEEEccEEEEEEcccccEEcccccccccccccEEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHc
cEEEEcccHcccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccHHHcccccccccccccccccccEEEEEccEEEEEEEccccccccEEEEEEEccEEEEEEcccccEEcccccccccccccEEEEEcccEEEEEEEEcccccHHHHHccccccccccEEcccccccccccHHHHHHHHHHc
maiisdfqedenkpdpkknpsasasssspssaktssfsatldpsnplgfLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKekssntkkqpqpqsphqEEVKAKKMKEEKkeeekfedlptmkvqkapppepqldangnparapnkgngldlenySWTQILQEVTvsvpvpagtksrFVLCEIKKnhlkvglkgqppiidgelhmavkpddcywsiedQKTVSILLTKQNQMEWWKCLIkggpeidtqkvepensklsdldpetRSTVEKMM
maiisdfqedenkpdpkknpsasasssspssaKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAkekssntkkqpqpqsphqeevkAKKMKEEKkeeekfedlptmkvqKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKnhlkvglkgqppiIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGpeidtqkvepensklsdldpetrstvekmm
MAIISDFQEDENkpdpkknpsasasssspssaktssfsaTLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQeevkakkmkeekkeeekfeDLPTMKVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM
***********************************************GFLEKAFEFVAKESDFL*************************************************************************************LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGG******************************
MAIISDF*********************************LDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMR********************************************************************GNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQ*****************STVEKMM
MAIISD**********************************LDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAM****************************************DLPTMKVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKV**********************
*********************************TSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPH*E*****************************************ARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPE*****D*DPETRSTVE***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIISDFQEDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q9LV09304 Protein BOBBER 1 OS=Arabi yes no 0.867 0.776 0.594 5e-71
Q9STN7293 Protein BOBBER 2 OS=Arabi no no 0.852 0.791 0.551 2e-67
O35685332 Nuclear migration protein yes no 0.474 0.388 0.564 4e-38
Q63525332 Nuclear migration protein yes no 0.474 0.388 0.564 2e-37
Q5ZIN1341 Nuclear migration protein yes no 0.507 0.404 0.535 4e-37
Q9Y266331 Nuclear migration protein yes no 0.474 0.389 0.564 4e-37
Q17QG2332 Nuclear migration protein yes no 0.474 0.388 0.557 1e-36
O60166166 Nuclear movement protein yes no 0.433 0.710 0.425 1e-23
P17624198 Nuclear movement protein yes no 0.433 0.595 0.456 1e-23
Q54M64171 Nuclear movement protein yes no 0.441 0.701 0.421 1e-22
>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1 Back     alignment and function desciption
 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 178/244 (72%), Gaps = 8/244 (3%)

Query: 37  FSATLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQS- 95
           F ATL  +NPLGFLEK F+F+ ++SDFL K +AE +IV A+RAAKEK    +K+   +  
Sbjct: 21  FRATLSSANPLGFLEKVFDFLGEQSDFLKKPSAEDEIVVAVRAAKEKLKKAEKKKAEKES 80

Query: 96  --PHQEEVKAKKMKEEKKEEEKFEDLPTMKVQKAPPPEPQLDANGNPAR-----APNKGN 148
             P +++ + + +K  +K+ EK    PT+    A P E +        +      PNKGN
Sbjct: 81  VKPVEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIEVEKPKEEEEKKESGPIVPNKGN 140

Query: 149 GLDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVK 208
           G DLENYSW Q LQEVTV++PVP GTK+R V+CEIKKN LKVGLKGQ PI+DGEL+ +VK
Sbjct: 141 GTDLENYSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVK 200

Query: 209 PDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTV 268
           PDDCYW+IEDQK +SILLTK +QMEWWKC +KG PEIDTQKVEPE SKL DLDPETRSTV
Sbjct: 201 PDDCYWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTV 260

Query: 269 EKMM 272
           EKMM
Sbjct: 261 EKMM 264
Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1 Back     alignment and function description
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1 Back     alignment and function description
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1 Back     alignment and function description
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1 Back     alignment and function description
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1 Back     alignment and function description
>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1 Back     alignment and function description
>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nudc PE=3 SV=1 Back     alignment and function description
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC PE=3 SV=1 Back     alignment and function description
>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
255544970307 nuclear movement protein nudc, putative 0.974 0.863 0.585 3e-82
356516049299 PREDICTED: nuclear migration protein nud 0.933 0.849 0.602 2e-81
359806464301 uncharacterized protein LOC100813799 [Gl 0.959 0.867 0.591 6e-77
449456379318 PREDICTED: nuclear migration protein nud 1.0 0.855 0.597 8e-77
77999263308 salt tolerance protein 5-like protein [S 0.955 0.844 0.535 3e-75
225455106289 PREDICTED: nuclear migration protein nud 0.915 0.861 0.551 6e-72
30524691295 salt tolerance protein 5 [Beta vulgaris] 0.904 0.833 0.551 2e-71
357436495289 Nuclear migration protein nudC [Medicago 0.915 0.861 0.564 2e-70
357436499 624 Nuclear migration protein nudC [Medicago 0.933 0.407 0.564 2e-70
388501800295 unknown [Medicago truncatula] 0.933 0.861 0.564 3e-70
>gi|255544970|ref|XP_002513546.1| nuclear movement protein nudc, putative [Ricinus communis] gi|223547454|gb|EEF48949.1| nuclear movement protein nudc, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/280 (58%), Positives = 207/280 (73%), Gaps = 15/280 (5%)

Query: 1   MAIISDFQEDENKPDPKKNPSASASSSSPSSAKTSSFSATLDPSNPLGFLEKAFEFVAKE 60
           MAIISD+QE+E +  P  +PS+S+S + P       F+AT DP NP+G +EK FEF+  E
Sbjct: 1   MAIISDYQEEEREMKPAASPSSSSSKTLP-------FNATFDPKNPIGIVEKVFEFLLTE 53

Query: 61  SDFLTKDAAEKQIVAAMRAAKEKSSNTKKQPQPQSPH-----QEEVKA--KKMKEEKKEE 113
           SDF+ +D+AEK+IVA ++AAKEKS     + +          +EEVKA  K+ K+E K+E
Sbjct: 54  SDFMARDSAEKEIVAVVKAAKEKSKRKTAEAERDKAAALKKVKEEVKAEVKQEKKEVKQE 113

Query: 114 EKFEDLPT-MKVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPA 172
            + +  PT ++ ++  P    ++      R PNKGNGLDLE YSWTQ LQEV + VPVP 
Sbjct: 114 REVKQEPTEIEKEETGPRGINIEKEETGPRVPNKGNGLDLEKYSWTQTLQEVNIQVPVPP 173

Query: 173 GTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQM 232
           GTKSRFV+C+IKKNHLKVGLKGQPPII+GEL+  +K DDCYWSIEDQ T+S+LLTK +Q+
Sbjct: 174 GTKSRFVVCDIKKNHLKVGLKGQPPIIEGELYKPIKVDDCYWSIEDQNTISVLLTKHDQL 233

Query: 233 EWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM 272
           EWWKCL+KG PEIDTQKVEPENSKL+DLDPETR TVEKMM
Sbjct: 234 EWWKCLVKGDPEIDTQKVEPENSKLADLDPETRQTVEKMM 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356516049|ref|XP_003526709.1| PREDICTED: nuclear migration protein nudC-like [Glycine max] Back     alignment and taxonomy information
>gi|359806464|ref|NP_001241505.1| uncharacterized protein LOC100813799 [Glycine max] gi|255645782|gb|ACU23383.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449456379|ref|XP_004145927.1| PREDICTED: nuclear migration protein nudC-like [Cucumis sativus] gi|449525876|ref|XP_004169942.1| PREDICTED: nuclear migration protein nudC-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|77999263|gb|ABB16978.1| salt tolerance protein 5-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|225455106|ref|XP_002265766.1| PREDICTED: nuclear migration protein nudC [Vitis vinifera] gi|302144032|emb|CBI23137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30524691|emb|CAC85247.1| salt tolerance protein 5 [Beta vulgaris] Back     alignment and taxonomy information
>gi|357436495|ref|XP_003588523.1| Nuclear migration protein nudC [Medicago truncatula] gi|355477571|gb|AES58774.1| Nuclear migration protein nudC [Medicago truncatula] Back     alignment and taxonomy information
>gi|357436499|ref|XP_003588525.1| Nuclear migration protein nudC [Medicago truncatula] gi|355477573|gb|AES58776.1| Nuclear migration protein nudC [Medicago truncatula] Back     alignment and taxonomy information
>gi|388501800|gb|AFK38966.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2178431304 BOB1 "BOBBER1" [Arabidopsis th 0.856 0.766 0.585 1.1e-69
TAIR|locus:2137345293 AT4G27890 "AT4G27890" [Arabido 0.845 0.784 0.540 8.8e-63
UNIPROTKB|F1NE97341 NUDC "Nuclear migration protei 0.540 0.431 0.510 5.7e-38
UNIPROTKB|Q5ZIN1341 NUDC "Nuclear migration protei 0.540 0.431 0.510 7.3e-38
MGI|MGI:106014332 Nudc "nuclear distribution gen 0.544 0.445 0.52 1.7e-36
ZFIN|ZDB-GENE-040426-899333 nudc "nuclear distribution gen 0.551 0.450 0.506 5.7e-36
WB|WBGene00003829320 nud-1 [Caenorhabditis elegans 0.474 0.403 0.534 7.2e-36
RGD|3215332 Nudc "nuclear distribution C h 0.544 0.445 0.52 7.2e-36
UNIPROTKB|Q17QG2332 NUDC "Nuclear migration protei 0.544 0.445 0.513 1.9e-35
UNIPROTKB|F1STR6331 NUDC "Uncharacterized protein" 0.544 0.447 0.506 1.9e-35
TAIR|locus:2178431 BOB1 "BOBBER1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 141/241 (58%), Positives = 169/241 (70%)

Query:    40 TLDPSNPLGFLEKAFEFVAKESDFLTKDAAEKQIVAAMRAAKEKSSNT-KKQPQPQS--P 96
             TL  +NPLGFLEK F+F+ ++SDFL K +AE +IV A+RAAKEK     KK+ + +S  P
Sbjct:    24 TLSSANPLGFLEKVFDFLGEQSDFLKKPSAEDEIVVAVRAAKEKLKKAEKKKAEKESVKP 83

Query:    97 HQXXXXXXXXXXXXXXXXXXXDLPTMKVQKAPP-----PEPQLDANGNPARAPNKGNGLD 151
              +                     PT+    A P     P+ + +   +    PNKGNG D
Sbjct:    84 VEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIEVEKPKEEEEKKESGPIVPNKGNGTD 143

Query:   152 LENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDD 211
             LENYSW Q LQEVTV++PVP GTK+R V+CEIKKN LKVGLKGQ PI+DGEL+ +VKPDD
Sbjct:   144 LENYSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDD 203

Query:   212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM 271
             CYW+IEDQK +SILLTK +QMEWWKC +KG PEIDTQKVEPE SKL DLDPETRSTVEKM
Sbjct:   204 CYWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKM 263

Query:   272 M 272
             M
Sbjct:   264 M 264
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=RCA;IDA
GO:0009408 "response to heat" evidence=IEP;RCA;IMP
GO:0009555 "pollen development" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0010450 "inflorescence meristem growth" evidence=IMP
GO:0032502 "developmental process" evidence=IMP
GO:0048448 "stamen morphogenesis" evidence=IMP
GO:0048833 "specification of floral organ number" evidence=IMP
GO:0009880 "embryonic pattern specification" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2137345 AT4G27890 "AT4G27890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE97 NUDC "Nuclear migration protein nudC" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIN1 NUDC "Nuclear migration protein nudC" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:106014 Nudc "nuclear distribution gene C homolog (Aspergillus)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-899 nudc "nuclear distribution gene C homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00003829 nud-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|3215 Nudc "nuclear distribution C homolog (A. nidulans)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QG2 NUDC "Nuclear migration protein nudC" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1STR6 NUDC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LV09BOB1_ARATHNo assigned EC number0.59420.86760.7763yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
cd0646785 cd06467, p23_NUDC_like, p23_like domain of NUD (nu 6e-41
cd0649287 cd06492, p23_mNUDC_like, p23-like NUD (nuclear dis 2e-32
pfam0496978 pfam04969, CS, CS domain 1e-20
cd0646384 cd06463, p23_like, Proteins containing this p23_li 3e-19
cd0649493 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear di 7e-15
cd06495102 cd06495, p23_NUDCD3_like, p23-like NUD (nuclear di 3e-10
cd0649385 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD 3e-09
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 0.001
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.003
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information 
 Score =  135 bits (343), Expect = 6e-41
 Identities = 46/85 (54%), Positives = 61/85 (71%)

Query: 155 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYW 214
           YSWTQ L EVTV++P+P GTKS+ V  EI   HLKVG+KG  P++DGEL+  VK D+  W
Sbjct: 1   YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTW 60

Query: 215 SIEDQKTVSILLTKQNQMEWWKCLI 239
           ++ED K + I L K+N+ EWW  L+
Sbjct: 61  TLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85
>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>gnl|CDD|218355 pfam04969, CS, CS domain Back     alignment and domain information
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>gnl|CDD|107244 cd06495, p23_NUDCD3_like, p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 100.0
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 99.96
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 99.92
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 99.91
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 99.9
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 99.84
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 99.78
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 99.66
cd0646892 p23_CacyBP p23_like domain found in proteins simil 99.66
cd0646384 p23_like Proteins containing this p23_like domain 99.64
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 99.59
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 99.59
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.58
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 99.49
cd0648887 p23_melusin_like p23_like domain similar to the C- 99.44
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 99.09
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.06
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 99.05
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 99.02
KOG4379 596 consensus Uncharacterized conserved protein (tumor 99.02
PF1405062 Nudc_N: N-terminal conserved domain of Nudc. 98.89
cd0029880 ACD_sHsps_p23-like This domain family includes the 98.86
KOG3260224 consensus Calcyclin-binding protein CacyBP [Signal 98.22
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 98.03
COG0071146 IbpA Molecular chaperone (small heat shock protein 97.37
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 97.35
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 97.18
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 96.87
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 96.82
COG5091368 SGT1 Suppressor of G2 allele of skp1 and related p 96.52
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 96.11
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 96.0
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 95.94
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 95.86
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 95.65
PRK10743137 heat shock protein IbpA; Provisional 95.63
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 95.5
PRK11597142 heat shock chaperone IbpB; Provisional 95.43
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 95.14
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 94.75
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 94.58
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 93.84
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 91.63
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 90.99
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 87.59
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-38  Score=271.69  Aligned_cols=130  Identities=63%  Similarity=1.089  Sum_probs=127.3

Q ss_pred             CCCCCCCCCcCceEEEeecCeEEEEEecCCCC-CccceEEEEecCEEEEEeCCCCceeccccccccccCCceeEEeCCcE
Q 046801          143 APNKGNGLDLENYSWTQILQEVTVSVPVPAGT-KSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKT  221 (272)
Q Consensus       143 ~p~~~nG~~~~~YsWtQT~~eV~V~V~lP~gt-~~kDV~V~i~~~~L~V~~kG~~~lleG~L~~~Vd~DeStWtied~k~  221 (272)
                      .|+.|||+..+.|.|+||+.+|+|.|+||+|+ ++++|+|.|..+||+|+++|+++|++|+|++.|++|+|+|+|++++.
T Consensus         9 ~p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~WtiEd~k~   88 (179)
T KOG2265|consen    9 KPNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTWTIEDGKM   88 (179)
T ss_pred             CCcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceEEecCCEE
Confidence            49999999999999999999999999999999 99999999999999999999989999999999999999999999999


Q ss_pred             EEEEEEeccCCCCcCccccCCCCCCCCccccCCCCCCCCCHHHHHHHHhhC
Q 046801          222 VSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM  272 (272)
Q Consensus       222 L~I~L~K~~~~~wW~~L~kgd~~ID~~kv~~e~~~l~dLD~etr~~veKmm  272 (272)
                      |.|+|+|.+.++||.+|++|++.||++++++++++|+|||+|||++|+|||
T Consensus        89 i~i~l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmm  139 (179)
T KOG2265|consen   89 IVILLKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMM  139 (179)
T ss_pred             EEEEeeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccc
Confidence            999999999889999999999999999999999999999999999999998

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown] Back     alignment and domain information
>PF14050 Nudc_N: N-terminal conserved domain of Nudc Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms] Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only] Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
1wfi_A131 Nuclear Move Domain Of Nuclear Distribution Gene C 5e-31
3qor_A121 Crystal Structure Of Human Nuclear Migration Protei 7e-27
3qor_C121 Crystal Structure Of Human Nuclear Migration Protei 1e-26
2cr0_A121 Solution Structure Of Nuclear Move Domain Of Nuclea 1e-25
2o30_A131 Nuclear Movement Protein From E. Cuniculi Gb-M1 Len 6e-11
2rh0_A157 Crystal Structure Of Nudc Domain-containing Protein 1e-08
1wgv_A124 Solution Structure Of The Cs Domain Of Human Kiaa10 5e-07
>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog Length = 131 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 154 NYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDD 211
           NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++
Sbjct: 9   NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEE 68
Query: 212 CYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTV 268
             W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS V
Sbjct: 69  SSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125
>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121 Back     alignment and structure
>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121 Back     alignment and structure
>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear Distribution Gene C Length = 121 Back     alignment and structure
>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1 Length = 131 Back     alignment and structure
>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2 (13542905) From Mus Musculus At 1.95 A Resolution Length = 157 Back     alignment and structure
>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068 Protein Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 8e-55
2o30_A131 Nuclear movement protein; MCSG, structural genomic 1e-47
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 1e-46
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 2e-38
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 3e-32
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 2e-05
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 9e-04
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131 Back     alignment and structure
 Score =  172 bits (437), Expect = 8e-55
 Identities = 64/124 (51%), Positives = 86/124 (69%), Gaps = 2/124 (1%)

Query: 147 GNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELH 204
            +G    NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+
Sbjct: 2   SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELY 61

Query: 205 MAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPET 264
             VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ET
Sbjct: 62  NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 121

Query: 265 RSTV 268
           RS V
Sbjct: 122 RSMV 125
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Length = 157 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 100.0
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 100.0
2o30_A131 Nuclear movement protein; MCSG, structural genomic 100.0
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 99.96
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 99.91
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.88
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.78
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 99.77
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 99.72
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 99.68
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 99.64
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 99.61
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.26
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.14
4fei_A102 Heat shock protein-related protein; stress respons 97.95
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 97.93
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 97.58
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 97.47
1gme_A151 Heat shock protein 16.9B; small heat shock protein 97.34
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 97.15
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 97.01
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 96.86
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 96.78
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 96.06
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 95.73
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 90.15
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
Probab=100.00  E-value=1.1e-38  Score=262.58  Aligned_cols=127  Identities=50%  Similarity=0.839  Sum_probs=123.1

Q ss_pred             CCCCCCcCceEEEeecCeEEEEEecCCC--CCccceEEEEecCEEEEEeCCCCceeccccccccccCCceeEEeCCcEEE
Q 046801          146 KGNGLDLENYSWTQILQEVTVSVPVPAG--TKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVS  223 (272)
Q Consensus       146 ~~nG~~~~~YsWtQT~~eV~V~V~lP~g--t~~kDV~V~i~~~~L~V~~kG~~~lleG~L~~~Vd~DeStWtied~k~L~  223 (272)
                      .|||+.++.|.|+||.++|+|+|+||++  ++++||.|.|++++|+|+++|.+++++|+||++|++++|+|++++++.|+
T Consensus         1 ~~ng~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~~k~v~   80 (131)
T 1wfi_A            1 GSSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             CCCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcCCCEEE
Confidence            4899999999999999999999999998  89999999999999999999987899999999999999999999987799


Q ss_pred             EEEEeccCCCCcCccccCCCCCCCCccccCCCCCCCCCHHHHHHHHhhC
Q 046801          224 ILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMM  272 (272)
Q Consensus       224 I~L~K~~~~~wW~~L~kgd~~ID~~kv~~e~~~l~dLD~etr~~veKmm  272 (272)
                      |+|.|.+++.||++|++|+++||++++.|++++|+|||+|||++|||||
T Consensus        81 i~L~K~~~~~~W~~L~~~~~~id~~ki~pe~~~~~dld~e~r~~vekmm  129 (131)
T 1wfi_A           81 VHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPS  129 (131)
T ss_dssp             EEEEBSSSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCCCCC
T ss_pred             EEEEECCCCCCChhhhcCCCCCCccEecCCCCCcccCCHHHHHHHHHHh
Confidence            9999999878999999999999999999999999999999999999999
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1wfia_131 b.15.1.4 (A:) Nuclear migration protein nudC {Mous 1e-49
d1wgva_124 b.15.1.4 (A:) NudC domain containing protein 3, NU 4e-35
d1rl1a_92 b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo 2e-15
d1ejfa_110 b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien 3e-15
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  158 bits (400), Expect = 1e-49
 Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 2/128 (1%)

Query: 147 GNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELH 204
            +G    NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+
Sbjct: 2   SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELY 61

Query: 205 MAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPET 264
             VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ET
Sbjct: 62  NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 121

Query: 265 RSTVEKMM 272
           RS V    
Sbjct: 122 RSMVSGPS 129
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 100.0
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 99.95
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 99.78
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 99.77
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 99.38
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 97.31
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 96.93
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=231.25  Aligned_cols=125  Identities=50%  Similarity=0.852  Sum_probs=117.5

Q ss_pred             CCCCCcCceEEEeecCeEEEEEec--CCCCCccceEEEEecCEEEEEeCCCCceeccccccccccCCceeEEeCCcEEEE
Q 046801          147 GNGLDLENYSWTQILQEVTVSVPV--PAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSI  224 (272)
Q Consensus       147 ~nG~~~~~YsWtQT~~eV~V~V~l--P~gt~~kDV~V~i~~~~L~V~~kG~~~lleG~L~~~Vd~DeStWtied~k~L~I  224 (272)
                      .||+..++|+|+||.++|+|+|++  |.+++++||.|.|++++|.|.++|+++++.|+||+.|++++|+|+|++++.|+|
T Consensus         2 ~~G~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied~~~l~i   81 (131)
T d1wfia_           2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTV   81 (131)
T ss_dssp             CCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEE
T ss_pred             CCCCCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeCCCEEEE
Confidence            489999999999999999999876  568999999999999999999999878999999999999999999999888899


Q ss_pred             EEEeccCCCCcCccccCCCCCCCCccccCCCCCCCCCHHHHHHHHhh
Q 046801          225 LLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKM  271 (272)
Q Consensus       225 ~L~K~~~~~wW~~L~kgd~~ID~~kv~~e~~~l~dLD~etr~~veKm  271 (272)
                      +|.|...+.||++||+|+++||++++.+++++|+|||+|||++|.+=
T Consensus        82 ~L~K~~~~~~W~~l~~gd~~id~~~~~~~~~~l~d~D~et~~~i~~~  128 (131)
T d1wfia_          82 HLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGP  128 (131)
T ss_dssp             EEEBSSSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCCCC
T ss_pred             EEEECCCCccCHHHcCCCCCCCHhHcCcccCCCccCCHHHHHhhhcc
Confidence            99999888999999999999999999999999999999999988753
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure