Citrus Sinensis ID: 048199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEcccEEEEEEEcccccccccccccEEEccccccEEEcccccEEEEEEcccccccccccccccEEccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccccccEEEcccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHccHccccccccHccHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEcccccEEEEEccccEEEEEEccHEccccccccccEEEEccccEEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccEEEEcccccEEEc
Coil and Loop (DISEMBL)
mdevstepvvpavkpdmkpsstdtapqeTDAAAAYTAAastsevgvseldkdmlcPICMQIIKEAFLTACGHSFCYMCIITHlrnksdcpccghyltnnqlypNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRmlgddsntrKSWLSSIDknssgiitsslnarggssagslqnkkgdgkaqanshghqrkdsltgsdsqclnqsglsVVRKKRVHAQFNDLQECYLQKRrqmanqphtkqesdkniihregynaglADFQSVLTTFTRYSRLRVIAELRhgdifhsanivssiefdrddqlfatagvSRRIKVFDFasvvnepadvhcpvvemptrsklsclswnkfsknriassdyeGIVTVWDVTTQQSVMEYEEHEkrawsvdfsrtepsmlvsgsddckvly
Flexible Loop (DISEMBL)
mdevstepvvpavkpdmkpsstDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIqtdlhyikedinaverhridlyrardrysvklrmlgddsntrksWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHghqrkdsltgsdsqclnQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANqphtkqesdkniIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFasvvnepadvhcpvvemptrsklsclswNKFSknriassdyegiVTVWDVTTQQSVMEYEEHEkrawsvdfsrtepsmlvsgsddckvly
Low Complexity Region (SEG)
MDEVSTEPVVPAVKPDMKPSStdtapqetdaaaaytaaastseVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Disordered region (IsUnstruct)
********************************************GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKK*******************LQQGCGVSV*************************MQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRML*************************************************************************VVRKKRVHAQFNDLQECYL*******************IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE******W***********************
Disordered Region (DISOPRED)
**************************************************KDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLL*********************LQQGCGVSVKEIDSLMSLLSEKKRKM*QEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD*******************************************************************LTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQM*********************AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Disordered Region (DISEMBL)
*********VPAVKP*******************************SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKK********ERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLN***************************************LNQSGLSVVRKKRVHAQFNDLQECYLQKRR************DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Disordered Region (DISPRO)
***********************************************ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRML********************************************************************QSGLSVVRKKRVHAQFNDLQECYLQKRRQMAN******************NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSxxxxxxxxxxxxxxxxxxxxxxxxRNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
P43254	675	E3 ubiquitin-protein liga	yes	no	0.981	0.72	0.771	0.0
P93471	672	E3 ubiquitin-protein liga	N/A	no	0.975	0.718	0.763	0.0
Q8NHY2	731	E3 ubiquitin-protein liga	yes	no	0.789	0.534	0.354	3e-71
Q9R1A8	733	E3 ubiquitin-protein liga	yes	no	0.789	0.533	0.352	1e-70
Q9SYX2	1029	Protein SUPPRESSOR OF PHY	no	no	0.420	0.202	0.396	2e-41
Q9T014	1036	Protein SPA1-RELATED 2 OS	no	no	0.301	0.143	0.503	2e-41
Q94BM7	794	Protein SPA1-RELATED 4 OS	no	no	0.294	0.183	0.493	8e-40
Q9LJR3	845	Protein SPA1-RELATED 3 OS	no	no	0.636	0.372	0.305	2e-39
Q9LTJ6	385	WD repeat-containing prot	no	no	0.238	0.306	0.387	5e-13
Q9FFA7	368	WD repeat-containing prot	no	no	0.230	0.309	0.359	9e-12

>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/495 (77%), Positives = 436/495 (88%), Gaps = 9/495 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP--QETDAAAAYTAAASTSEVGVSELDKDMLCPIC 58
           M+E+ST+PVVPAVKPD + SS        E D        +  SE+G  +LDKD+LCPIC
Sbjct: 1   MEEISTDPVVPAVKPDPRTSSVGEGANRHEND-----DGGSGGSEIGAPDLDKDLLCPIC 55

Query: 59  MQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118
           MQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR 
Sbjct: 56  MQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARH 115

Query: 119 ISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLR 178
           +SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLR
Sbjct: 116 VSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLR 175

Query: 179 KQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSID 238
           KQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +
Sbjct: 176 KQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--E 233

Query: 239 KNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVV 298
           KN  G  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ 
Sbjct: 234 KNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMA 293

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRY
Sbjct: 294 RKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRY 353

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP
Sbjct: 354 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCP 413

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           +VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFSR
Sbjct: 414 IVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSR 473

Query: 479 TEPSMLVSGSDDCKV 493
           TEPSMLVSGSDDCKV
Sbjct: 474 TEPSMLVSGSDDCKV 488

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/495 (76%), Positives = 430/495 (86%), Gaps = 12/495 (2%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+E S  P+VPAV   +KP  +     +T AA  +    +     +S+LDKD LCPICMQ
Sbjct: 1   MEEHSVGPLVPAV---VKPEPSKNFSTDTTAAGTFLLVPT-----MSDLDKDFLCPICMQ 52

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN+ L+PNFLLDKLLKKTS RQIS
Sbjct: 53  IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDKLLKKTSDRQIS 112

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           KTASP+E+FRQA+Q+GC V++KE+D+L+ LL+EKKRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct: 113 KTASPVEHFRQAVQKGCEVTMKELDTLLLLLTEKKRKMEQEEAERNMQILLDFLHCLRKQ 172

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDELKE+QTDL +IKEDI AVE+HR+DLYRARDRYSVKLRML DDS  RKS  SS+D N
Sbjct: 173 KVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYSVKLRML-DDSGGRKSRHSSMDLN 231

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGH--QRKDSLTGSDSQCLNQSGLSVV 298
           SSG+ +S LN RGG S+GS   KK DGK+Q +SHGH  QR+D +TGSDSQ +NQSGL++V
Sbjct: 232 SSGLASSPLNLRGGLSSGS-HTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSGLALV 290

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKRVH QFNDLQECYLQKRRQ A++PH +QE D N I REGY+ GL DFQSVLTTFTRY
Sbjct: 291 RKKRVHTQFNDLQECYLQKRRQAADKPHGQQERDTNFISREGYSCGLDDFQSVLTTFTRY 350

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAE+RHGDIFHSANIVSSIEFDRDD LFATAGVSRRIKVFDF++VVNEP D HCP
Sbjct: 351 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCP 410

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           VVEM TRSKLSCLSWNK++KN+IASSDYEGIVTVW +TT++S+MEYEEHEKRAWSVDFSR
Sbjct: 411 VVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSR 470

Query: 479 TEPSMLVSGSDDCKV 493
           T+PSMLVSGSDDCKV
Sbjct: 471 TDPSMLVSGSDDCKV 485

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Pisum sativum (taxid: 3888)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1

 Score =  269 bits (688), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 250/457 (54%), Gaps = 66/457 (14%)

Query: 52  DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKL 110
           D +CPIC  +I+EA++T CGHSFCY CI   L + + CP C + + N + LYPNFL+++L
Sbjct: 133 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNEL 192

Query: 111 LKKTSAR------QISKTASPLENFR-QALQQGCG-----VSVKEIDSLMSLLSEKKRKM 158
           + K   R      ++  + S     R Q  Q   G     + +  ++ ++ LL +KK+++
Sbjct: 193 ILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNLMLELLVQKKKQL 252

Query: 159 EQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSV 218
           E E     +QIL++FL   R+ K ++L++IQ +L  ++EDI  VE     LY        
Sbjct: 253 EAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS-GLYSP------ 305

Query: 219 KLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQR 278
               + +DS   +    +   + S II S+  ++    +GS Q KK              
Sbjct: 306 ----VSEDSTVPQ--FEAPSPSHSSIIDSTEYSQPPGFSGSSQTKK-------------- 345

Query: 279 KDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKR-RQMANQPHTKQESDKNIIH 337
                    Q    S L+  R+KR+ A F DL++CY   R  ++++   T  + D     
Sbjct: 346 ---------QPWYNSTLA-SRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD----- 390

Query: 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGV 396
                    +FQ  L+ FTRY+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV
Sbjct: 391 ---------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 441

Query: 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456
           +++IKV+++ +V+ +  D+H P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  
Sbjct: 442 TKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 501

Query: 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           T Q    Y+EHEKR WSVDF+  +P +L SGSDD KV
Sbjct: 502 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV 538

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2

 Score =  267 bits (683), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 250/457 (54%), Gaps = 66/457 (14%)

Query: 52  DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKL 110
           D +CPIC  +I+EA++T CGHSFCY CI   L + + CP C + + N + LYPNFL+++L
Sbjct: 135 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNEL 194

Query: 111 LKKTSAR------QISKTASPLENFR-QALQQGCG-----VSVKEIDSLMSLLSEKKRKM 158
           + K   R      ++  + S     R Q  Q   G     + +  ++ ++ LL +KK+++
Sbjct: 195 ILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQL 254

Query: 159 EQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSV 218
           E E     +QIL++FL   R+ K ++L++IQ +L  ++EDI  VE     LY        
Sbjct: 255 EAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS-GLYSP------ 307

Query: 219 KLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQR 278
               + +DS   +    +   + S II S+  ++    +G+ Q KK              
Sbjct: 308 ----VSEDSTVPQ--FEAPSPSHSSIIDSTEYSQPPGFSGTSQTKK-------------- 347

Query: 279 KDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKR-RQMANQPHTKQESDKNIIH 337
                    Q    S L+  R+KR+ A F DL++CY   R  ++++   T  + D     
Sbjct: 348 ---------QPWYNSTLA-SRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD----- 392

Query: 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGV 396
                    +FQ  L+ FTRY+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV
Sbjct: 393 ---------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 443

Query: 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456
           +++IKV+++ +V+ +  D+H P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  
Sbjct: 444 TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 503

Query: 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           T Q    Y+EHEKR WSVDF+  +P +L SGSDD KV
Sbjct: 504 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV 540

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SYX2|SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 19/227 (8%)

Query: 286 DSQCLNQSGLSV--VRKKRVHAQFNDLQECYLQKRRQM-ANQPHTKQESDKNIIHR---- 338
           D  C   S L V      R+ +    L++ Y   R Q+  +       SDK +  R    
Sbjct: 607 DEHCTTSSALFVPTANTDRLMSNIRQLEDAYFFMRSQINLSSSAATARSDKTLKDRDRCS 666

Query: 339 EGYNAG------------LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR 386
           E  N              L  F   L  F RYS+      +R GD+ +SA++V S+ FD 
Sbjct: 667 ENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDP 726

Query: 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY 446
           D++  A AG+S++IK+FDF + +NE   VH P+VEM  +SKLSC+ WN + KN +AS+DY
Sbjct: 727 DEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDY 786

Query: 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +G+V +WD  T Q   +Y EH+KRAWSVDFS ++P+  VSGSDDC V
Sbjct: 787 DGVVQIWDAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSV 833

Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 105/149 (70%)

Query: 345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404
           +  F   L  + RYS+      LR  ++ +++N++ S+ FDRD+  FATAGVS++IK+++
Sbjct: 692 VGAFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYE 751

Query: 405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464
           F S+ NE  D+H P +EMP RSKLS + WN + +N +ASSDY+GIV +WDVTT Q++  +
Sbjct: 752 FNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHF 811

Query: 465 EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            EHEKRAWSVDFS   P+ L SGSDDC V
Sbjct: 812 IEHEKRAWSVDFSEACPTKLASGSDDCSV 840

Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 108/146 (73%)

Query: 348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407
           F   L  +  +S+LRV A+L+ GD+ +S+N+V +I FDRD + FATAGV+++IK+F+  S
Sbjct: 456 FLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECES 515

Query: 408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467
           ++ +  D+H PVVE+ +RSKLS + WN + K+++ASS++EG+V VWDV   Q V E +EH
Sbjct: 516 IIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEH 575

Query: 468 EKRAWSVDFSRTEPSMLVSGSDDCKV 493
           EKR WS+D+S  +P++L SGSDD  V
Sbjct: 576 EKRVWSIDYSSADPTLLASGSDDGSV 601

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 61/376 (16%)

Query: 151 LSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLY 210
           L E++  +E  +     + LL+FL  ++++K +    +Q  +  +  DI  V + ++ L 
Sbjct: 304 LEEREAAIELRDRIEEQESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILK 363

Query: 211 RARDRYSVKLRMLGDDSNTRKSWLSSIDKN----SSGIITSSLNARGGSSAGSLQNKKGD 266
           +                  R S LS   K+    +SG    S  A    SA     K+  
Sbjct: 364 K------------------RGSSLSDFSKDDHQYTSGQPLMSFQANEEPSAFLASRKRVR 405

Query: 267 GKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECY-LQKRRQMANQP 325
               A  +G +  +   GS          +++   R+   F  L+  Y L +RRQM    
Sbjct: 406 QGILALENGVEVDEESQGS----------TLLESSRLMRNFKKLESVYFLTRRRQMKAAA 455

Query: 326 -------HTKQESD--------------------KNIIHREGYNAGLAD-FQSVLTTFTR 357
                  H+   S+                    K   + +    G  D F   L  +  
Sbjct: 456 SGKSLTRHSPLSSENGRGSMIVSEKSSVSNPVAPKAFFNNDSRQGGWIDPFLEGLCRYLS 515

Query: 358 YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417
           +S+LRV A+L+ GD+ +S+N+V ++ FDR+ +LFATAGV+++IK+F+  S+VN+  D+H 
Sbjct: 516 FSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNSIVNDNRDIHY 575

Query: 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
           PVVE+  RSKLS L WN + K++IASS+++G+V +WDV   Q V E +EH+KR WS+D S
Sbjct: 576 PVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDIS 635

Query: 478 RTEPSMLVSGSDDCKV 493
             +P++L SGSDD  V
Sbjct: 636 SADPTLLASGSDDGTV 651

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTJ6|RUP1_ARATH WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 6/124 (4%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE--MPTRSKLSCLS 432
            ++ + +IEFD   ++ AT G++R+I+ +  +S++ E  D H    E  + T +KLS L 
Sbjct: 70  GSDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLL-ESRDDHVTASESYICTPAKLSSLK 128

Query: 433 WNK-FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSML-VSGSD 489
           W   FS   I S DY+G+VT +DV  Q  V E +EH  +R WSVD++    S++  SGSD
Sbjct: 129 WRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSLIGASGSD 188

Query: 490 DCKV 493
           D  V
Sbjct: 189 DGTV 192

Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFA7|RUP2_ARATH WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 14/128 (10%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPADVHCPVVE--------MPTRS 426
           +++ +IEFD  D + ATAG+SR+I+ +   S++  N  +      V+        + T +
Sbjct: 41  DVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAVSGTGVSFVDQATACEYYICTPA 100

Query: 427 KLSCLSWNKFSKNR-IASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSML 484
           KLS L W   S  R I S DY+G+V  +D+  +  V E +EH  +R WSVD++R   +  
Sbjct: 101 KLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGAST 160

Query: 485 V--SGSDD 490
           V  SGSDD
Sbjct: 161 VGASGSDD 168

Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. May act as negative regulator of photoperiodic flowering by suppressing flowering through the action of CONSTANS (CO) and FLOWERING LOCUS T (FT).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
224131692	672	predicted protein [Populus trichocarpa]	0.979	0.721	0.780	0.0
15225760	675	E3 ubiquitin-protein ligase COP1 [Arabid	0.981	0.72	0.771	0.0
297823085	675	hypothetical protein ARALYDRAFT_902362 [	0.985	0.722	0.772	0.0
402685	675	regulatory protein [Arabidopsis thaliana	0.981	0.72	0.769	0.0
356554527	675	PREDICTED: E3 ubiquitin-protein ligase C	0.981	0.72	0.783	0.0
255587080	677	ubiquitin ligase protein cop1, putative	0.989	0.723	0.774	0.0
332656170	677	constitutively photomorphogenic 1 [Brass	0.981	0.717	0.756	0.0
313667084	676	COP1 protein [Brassica rapa var. purpura	0.981	0.718	0.75	0.0
302633366	677	constitutively photomorphogenic 1 [Brass	0.981	0.717	0.754	0.0
356501265	669	PREDICTED: E3 ubiquitin-protein ligase C	0.969	0.717	0.765	0.0

>gi|224131692|ref|XP_002321154.1| predicted protein [Populus trichocarpa] gi|222861927|gb|EEE99469.1| predicted protein [Populus trichocarpa]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/493 (78%), Positives = 432/493 (87%), Gaps = 8/493 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+EVST  +VPAVKP+ KPS++      T AA A    +S      +EL+KD LCPICMQ
Sbjct: 1   MEEVSTGAIVPAVKPEPKPSTS------TAAAVASPEPSSAPSAEEAELEKDFLCPICMQ 54

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+AFLT CGHSFCYMCI THLRNK+DCPCC HYLT NQL+PNFLL KLLKK SARQ S
Sbjct: 55  IIKDAFLTVCGHSFCYMCITTHLRNKNDCPCCSHYLTTNQLFPNFLLQKLLKKASARQTS 114

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           K ASP+E+FRQ+LQQGC VS+K++D+LMSLL+E+KRKMEQEEAERNMQ+LLDFLH LRKQ
Sbjct: 115 KNASPIEHFRQSLQQGCEVSIKDLDTLMSLLAERKRKMEQEEAERNMQVLLDFLHYLRKQ 174

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDEL E++TDL YIKEDI+AVE+HRI+LYRARDRYS+KLRMLGDD   RK W S+IDKN
Sbjct: 175 KVDELNEVRTDLRYIKEDIDAVEKHRIELYRARDRYSMKLRMLGDDLTVRKPWPSTIDKN 234

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRK 300
            SG++TSSLNARG ++ G++  KK DGKAQ +SHG QRKD+  GSD Q  N SGLS V+K
Sbjct: 235 HSGVVTSSLNARGLTT-GNIPIKKMDGKAQVSSHGLQRKDTSGGSDPQ-YNHSGLSAVKK 292

Query: 301 KRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSR 360
           KRVHAQFNDLQ+CYLQKRRQ+AN PH + E DKN+IHREGYNAGLADFQSVL TFT+YSR
Sbjct: 293 KRVHAQFNDLQDCYLQKRRQLANHPHNQSERDKNVIHREGYNAGLADFQSVLGTFTQYSR 352

Query: 361 LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420
           LRVIAELRHGDIFHSANIVSSIEFDRDD+ FATAGVSRRIKVFDF+SVVNEPADVHCPVV
Sbjct: 353 LRVIAELRHGDIFHSANIVSSIEFDRDDEFFATAGVSRRIKVFDFSSVVNEPADVHCPVV 412

Query: 421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480
           EM TRSKLSCLSWNKF+KN+IASSDYEGIVTVWDVTT+QSVMEYEEHEKRAWSVDFSRTE
Sbjct: 413 EMSTRSKLSCLSWNKFTKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTE 472

Query: 481 PSMLVSGSDDCKV 493
           PSMLVSGSDDCKV
Sbjct: 473 PSMLVSGSDDCKV 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225760|ref|NP_180854.1| E3 ubiquitin-protein ligase COP1 [Arabidopsis thaliana] gi|20141387|sp|P43254.2|COP1_ARATH RecName: Full=E3 ubiquitin-protein ligase COP1; AltName: Full=Constitutive photomorphogenesis protein 1 gi|2702280|gb|AAB91983.1| COP1 regulatory protein [Arabidopsis thaliana] gi|95147316|gb|ABF57293.1| At2g32950 [Arabidopsis thaliana] gi|330253672|gb|AEC08766.1| E3 ubiquitin-protein ligase COP1 [Arabidopsis thaliana]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/495 (77%), Positives = 436/495 (88%), Gaps = 9/495 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP--QETDAAAAYTAAASTSEVGVSELDKDMLCPIC 58
           M+E+ST+PVVPAVKPD + SS        E D        +  SE+G  +LDKD+LCPIC
Sbjct: 1   MEEISTDPVVPAVKPDPRTSSVGEGANRHEND-----DGGSGGSEIGAPDLDKDLLCPIC 55

Query: 59  MQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118
           MQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR 
Sbjct: 56  MQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARH 115

Query: 119 ISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLR 178
           +SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLR
Sbjct: 116 VSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLR 175

Query: 179 KQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSID 238
           KQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +
Sbjct: 176 KQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--E 233

Query: 239 KNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVV 298
           KN  G  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ 
Sbjct: 234 KNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMA 293

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRY
Sbjct: 294 RKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRY 353

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP
Sbjct: 354 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCP 413

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           +VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFSR
Sbjct: 414 IVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSR 473

Query: 479 TEPSMLVSGSDDCKV 493
           TEPSMLVSGSDDCKV
Sbjct: 474 TEPSMLVSGSDDCKV 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823085|ref|XP_002879425.1| hypothetical protein ARALYDRAFT_902362 [Arabidopsis lyrata subsp. lyrata] gi|297325264|gb|EFH55684.1| hypothetical protein ARALYDRAFT_902362 [Arabidopsis lyrata subsp. lyrata]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/493 (77%), Positives = 435/493 (88%), Gaps = 5/493 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+E+ST+P+VPAVKPD + SS        +           SE+G  +LDKD+LCPICMQ
Sbjct: 1   MEEISTDPLVPAVKPDPRTSSVGEGYNRNEND---DGGDGGSEIGAPDLDKDLLCPICMQ 57

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSARQ+S
Sbjct: 58  IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARQVS 117

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           KTASPL+ FR+ALQ+GC VS+KE+D+L+SLL+E+KRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct: 118 KTASPLDQFREALQRGCDVSIKEVDNLLSLLAERKRKMEQEEAERNMQILLDFLHCLRKQ 177

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +KN
Sbjct: 178 KVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--EKN 235

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRK 300
            SG  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ RK
Sbjct: 236 QSGFNSNSLSVRGGNFLGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARK 295

Query: 301 KRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSR 360
           KR+HAQFNDLQECYLQKRRQ+ +QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRYSR
Sbjct: 296 KRIHAQFNDLQECYLQKRRQLVDQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSR 355

Query: 361 LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420
           LRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP+V
Sbjct: 356 LRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIV 415

Query: 421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480
           EM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFSRTE
Sbjct: 416 EMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTE 475

Query: 481 PSMLVSGSDDCKV 493
           PSMLVSGSDDCKV
Sbjct: 476 PSMLVSGSDDCKV 488

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402685|gb|AAA32772.1| regulatory protein [Arabidopsis thaliana]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/495 (76%), Positives = 434/495 (87%), Gaps = 9/495 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP--QETDAAAAYTAAASTSEVGVSELDKDMLCPIC 58
           M+E+ST+PVVPAVKPD + SS        E D        +  SE+G  +LDKD+LCPIC
Sbjct: 1   MEEISTDPVVPAVKPDPRTSSVGEGANRHEND-----DGGSGGSEIGAPDLDKDLLCPIC 55

Query: 59  MQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118
           MQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR 
Sbjct: 56  MQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARH 115

Query: 119 ISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLR 178
           +SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLR
Sbjct: 116 VSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLR 175

Query: 179 KQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSID 238
           KQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +
Sbjct: 176 KQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--E 233

Query: 239 KNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVV 298
           KN  G  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ 
Sbjct: 234 KNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSIA 293

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRY
Sbjct: 294 RKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRY 353

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+S VNEPAD+ CP
Sbjct: 354 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSFVNEPADMQCP 413

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           +VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS MEYEEHEKRAWSVDFSR
Sbjct: 414 IVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSRMEYEEHEKRAWSVDFSR 473

Query: 479 TEPSMLVSGSDDCKV 493
           TEPSMLVSGSDDCKV
Sbjct: 474 TEPSMLVSGSDDCKV 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554527|ref|XP_003545597.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/495 (78%), Positives = 436/495 (88%), Gaps = 9/495 (1%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+E+S  P+VPAV   +KP ++  A     A  +  A+  T     SE DKD LCPICMQ
Sbjct: 1   MEELSAGPLVPAV---VKPEASKGA--AVAADTSAAASGGTFPASTSEPDKDFLCPICMQ 55

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN  L+PNFLLDKLLKKTSARQIS
Sbjct: 56  IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNTNLFPNFLLDKLLKKTSARQIS 115

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           KTASP+E+FRQALQ+GC VS+KE+D+L+SLL+EKKRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct: 116 KTASPVEHFRQALQKGCDVSIKELDTLLSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQ 175

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDELKE+QTDL +IKEDINAVE+HR+DLYRARDRYSVKLRML DDS  RKSW SS+DKN
Sbjct: 176 KVDELKEVQTDLQFIKEDINAVEKHRMDLYRARDRYSVKLRML-DDSGGRKSWHSSMDKN 234

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGH--QRKDSLTGSDSQCLNQSGLSVV 298
           +SG+I+S LN RGG S+GS   KK DGK+Q +SHGH  QR+D++TGSDSQ +NQSGLS+V
Sbjct: 235 NSGLISSPLNLRGGLSSGS-HTKKNDGKSQISSHGHGVQRRDAITGSDSQYINQSGLSLV 293

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKRVH QFNDLQECYLQKRR  A++PH++Q  D N+I REGY AGL DFQSVLTTFTRY
Sbjct: 294 RKKRVHTQFNDLQECYLQKRRHAADRPHSQQVRDINLISREGYTAGLEDFQSVLTTFTRY 353

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAELRHGDIFHSANIVSSIEFD DD LFATAGVSRRIKVFDF++VVNEP D HCP
Sbjct: 354 SRLRVIAELRHGDIFHSANIVSSIEFDCDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCP 413

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           VVEM TRSKLSCLSWNK++KN+IASSDYEGIVTVWDVTT++S+MEYEEHEKRAWSVDFSR
Sbjct: 414 VVEMSTRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSR 473

Query: 479 TEPSMLVSGSDDCKV 493
           T+PSMLVSGSDDCKV
Sbjct: 474 TDPSMLVSGSDDCKV 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587080|ref|XP_002534127.1| ubiquitin ligase protein cop1, putative [Ricinus communis] gi|223525812|gb|EEF28255.1| ubiquitin ligase protein cop1, putative [Ricinus communis]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/493 (77%), Positives = 436/493 (88%), Gaps = 3/493 (0%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+EVST  +VPAVK  ++P  + ++     A ++  AAA+  E G+SEL+KD LCPICMQ
Sbjct: 1   MEEVSTGAIVPAVK--LEPRPSSSSVAVAAAVSSEPAAAAEEEAGLSELEKDFLCPICMQ 58

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+AFLTACGHSFCYMCIITHLRNKSDCPCC HYLT NQL+PNFLL KLLKK SARQ S
Sbjct: 59  IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCTHYLTTNQLFPNFLLQKLLKKASARQTS 118

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           KTASP+E+FR ALQQGC +S+KE+D+LMS+LSEKKRKMEQEEAERNMQILLDFLH LRKQ
Sbjct: 119 KTASPVEHFRHALQQGCEISIKELDTLMSMLSEKKRKMEQEEAERNMQILLDFLHYLRKQ 178

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDEL E++TDL +IKEDI AVE+HRI+LY ARDRYS+KLRMLGDD N RK W  +I+K+
Sbjct: 179 KVDELNEVRTDLQFIKEDIEAVEKHRIELYHARDRYSMKLRMLGDDPNARKPWSPTIEKS 238

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRK 300
           + G+I+++ N RGG   G+L  KK DGKAQ +SHG QRKDSL+GSDSQ  N SGLSVVRK
Sbjct: 239 NGGVISNAFNVRGGMITGNLPTKKMDGKAQVSSHGLQRKDSLSGSDSQ-FNHSGLSVVRK 297

Query: 301 KRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSR 360
           KRVHAQFNDLQECYLQKRRQMANQ H +Q+ DKN++HREGY+ GL DFQSVL+TFT+YSR
Sbjct: 298 KRVHAQFNDLQECYLQKRRQMANQLHNQQDKDKNVMHREGYSTGLLDFQSVLSTFTQYSR 357

Query: 361 LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420
           LRVIAELRHGDIFHSANIVSSIEFDRDD+LFATAGVSRRIKVFDF++V+N+PADVHCPV 
Sbjct: 358 LRVIAELRHGDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVLNDPADVHCPVE 417

Query: 421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480
           EM TRSKLSCLSWNK++KN+IASSDYEGIVTVWDVTT+QSVMEYEEHEKRAWSVDFSRTE
Sbjct: 418 EMSTRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTE 477

Query: 481 PSMLVSGSDDCKV 493
           PSMLVSGSDDCKV
Sbjct: 478 PSMLVSGSDDCKV 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332656170|gb|AEE81754.1| constitutively photomorphogenic 1 [Brassica rapa subsp. rapa]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/497 (75%), Positives = 431/497 (86%), Gaps = 11/497 (2%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP---QETDAAAAYTAAASTSEVGVSELDKDMLCPI 57
           M+E+  +P+VPAVKPD + SS    P    E D   +        E+G  +LDKD+LCPI
Sbjct: 1   MEEIRKDPLVPAVKPDPRTSSIGEGPNHRHENDEGGS-----GGLEIGAPDLDKDLLCPI 55

Query: 58  CMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR 117
           CMQ+IK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR
Sbjct: 56  CMQVIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSAR 115

Query: 118 QISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCL 177
            +SKTASPL+ FR ALQ+GC VS+KE+D+L++LL+EKKRKMEQEEAERNMQILLDFLHCL
Sbjct: 116 HVSKTASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCL 175

Query: 178 RKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSI 237
           RKQK DEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W   +
Sbjct: 176 RKQKADELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAW--PL 233

Query: 238 DKNSSGIITSSLNARGGSSAGSLQNKKG-DGKAQANSHGHQRKDSLTGSDSQCLNQSGLS 296
           +K+ +G  ++SL+ RGG+ +G+ QNKK  +GKAQ +SHG  +KD+ +GSDSQ LNQS +S
Sbjct: 234 EKSHTGFNSNSLSIRGGNPSGNFQNKKVVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVS 293

Query: 297 VVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFT 356
           + RKKR+HAQFNDLQECYLQKRRQ+ +QPHT QESD +++ REGY+ GLADFQSVLTTFT
Sbjct: 294 MARKKRIHAQFNDLQECYLQKRRQLVDQPHTNQESDNSVVRREGYSHGLADFQSVLTTFT 353

Query: 357 RYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
           RYSRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ 
Sbjct: 354 RYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQ 413

Query: 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
           CP+VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDF
Sbjct: 414 CPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDF 473

Query: 477 SRTEPSMLVSGSDDCKV 493
           SRTEPSMLVSGSDDCKV
Sbjct: 474 SRTEPSMLVSGSDDCKV 490

Source: Brassica rapa subsp. rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313667084|gb|ADR72985.1| COP1 protein [Brassica rapa var. purpuraria] gi|338224822|gb|AEI89703.1| COP1 protein [Brassica rapa subsp. chinensis]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/496 (75%), Positives = 428/496 (86%), Gaps = 10/496 (2%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP---QETDAAAAYTAAASTSEVGVSELDKDMLCPI 57
           M+E+  +P+VPAVKPD + SS    P    E D   +        E+G  +LDKD+LCPI
Sbjct: 1   MEEIRKDPLVPAVKPDPRTSSIGEGPNRRHENDEGGS-----GGLEIGAPDLDKDLLCPI 55

Query: 58  CMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR 117
           CMQ+IK+AFLTACGHSFCYMCIITHL+NKSDCPCC  +LTN QLYPNFLLDKLLKKTSAR
Sbjct: 56  CMQVIKDAFLTACGHSFCYMCIITHLKNKSDCPCCSQHLTNKQLYPNFLLDKLLKKTSAR 115

Query: 118 QISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCL 177
            +SKTASPL+ FR ALQ+GC VS+KE+D+L++LL+EKKRKMEQEEAERNMQILLDFLHCL
Sbjct: 116 HVSKTASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCL 175

Query: 178 RKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSI 237
           RKQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    
Sbjct: 176 RKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAW--PP 233

Query: 238 DKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSV 297
           +K+ +G  ++SL+ RGG+   + QNKK +GKAQ +SHG  +KD+ +GSDSQ LNQS +S+
Sbjct: 234 EKSHTGFNSNSLSIRGGNPPANFQNKKVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVSM 293

Query: 298 VRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
            RKKR+HAQF+DLQECYLQKRRQ+ +QPH+ QESD +++ REGY+ GLADFQSVLTTFTR
Sbjct: 294 ARKKRIHAQFSDLQECYLQKRRQLVDQPHSNQESDNSVVRREGYSYGLADFQSVLTTFTR 353

Query: 358 YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417
           YSRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ C
Sbjct: 354 YSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQC 413

Query: 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
           P+VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFS
Sbjct: 414 PIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFS 473

Query: 478 RTEPSMLVSGSDDCKV 493
           RTEPSMLVSGSDDCKV
Sbjct: 474 RTEPSMLVSGSDDCKV 489

Source: Brassica rapa var. purpuraria

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302633366|gb|ADL59932.1| constitutively photomorphogenic 1 [Brassica napus]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/497 (75%), Positives = 429/497 (86%), Gaps = 11/497 (2%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAP---QETDAAAAYTAAASTSEVGVSELDKDMLCPI 57
           M+E+  +P+VPAVKPD + SS         E D   +        E+G  +LDKD+LCPI
Sbjct: 1   MEEIRKDPLVPAVKPDPRTSSIGEGHNHRHENDEGGS-----GGLEIGAPDLDKDLLCPI 55

Query: 58  CMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR 117
           CMQ+IK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR
Sbjct: 56  CMQVIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSAR 115

Query: 118 QISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCL 177
            +SKTASPL+ FR ALQ+GC VS+KE+D+L++LL+EKKRKMEQEEAERNMQILLDFLHCL
Sbjct: 116 HVSKTASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCL 175

Query: 178 RKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSI 237
           RKQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    
Sbjct: 176 RKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAW--PP 233

Query: 238 DKNSSGIITSSLNARGGSSAGSLQNKKG-DGKAQANSHGHQRKDSLTGSDSQCLNQSGLS 296
           +K+ +G  ++SL+ RGG+ +G+ QNKK  +GKAQ +SHG  +KD+ +GSDSQ LNQS +S
Sbjct: 234 EKSHTGFNSNSLSIRGGNPSGNFQNKKVVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVS 293

Query: 297 VVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFT 356
           + RKKR+HAQFNDLQECYLQKRRQ+ +QPH  QESD +++ REGY+ GLADFQSVLTTFT
Sbjct: 294 MARKKRIHAQFNDLQECYLQKRRQLVDQPHANQESDNSVVRREGYSHGLADFQSVLTTFT 353

Query: 357 RYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
           RYSRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ 
Sbjct: 354 RYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQ 413

Query: 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
           CP+VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDF
Sbjct: 414 CPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDF 473

Query: 477 SRTEPSMLVSGSDDCKV 493
           SRTEPSMLVSGSDDCKV
Sbjct: 474 SRTEPSMLVSGSDDCKV 490

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501265|ref|XP_003519446.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/495 (76%), Positives = 428/495 (86%), Gaps = 15/495 (3%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           M+E+S  P+VPAV   +KP        E    A+  A+  T     SE DKD LCPICMQ
Sbjct: 1   MEELSAGPLVPAV---VKP--------EPSKGASAAASGGTFPASTSEPDKDFLCPICMQ 49

Query: 61  IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
           IIK+ FLTACGHSFCYMCIITHLRNKSDCPCCG YLTN  L+PN LLDKLLKKTSARQIS
Sbjct: 50  IIKDPFLTACGHSFCYMCIITHLRNKSDCPCCGDYLTNTNLFPNLLLDKLLKKTSARQIS 109

Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
           KTASP+E+FRQ LQ+G  VS+KE+D+L+SLL+EKKRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct: 110 KTASPVEHFRQVLQKGSDVSIKELDTLLSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQ 169

Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
           KVDELKE+QTDLH+IKEDINAVE+HR++LYRARDRYSVKL+ML D S  RKSW SS+DKN
Sbjct: 170 KVDELKEVQTDLHFIKEDINAVEKHRMELYRARDRYSVKLQML-DGSGGRKSWHSSMDKN 228

Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGH--QRKDSLTGSDSQCLNQSGLSVV 298
           SSG+++S LN RGG S+GS   KK DGK+  +SHGH  QR++ +TGSDSQ +NQSGL++V
Sbjct: 229 SSGLLSSPLNLRGGLSSGS-HTKKNDGKSHISSHGHGIQRRNVITGSDSQYINQSGLALV 287

Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
           RKKRVH QFNDLQECYLQKRR  A++ H++QE D ++I REGY AGL DFQSVLTTFTRY
Sbjct: 288 RKKRVHTQFNDLQECYLQKRRHAADRSHSQQERDISLISREGYTAGLEDFQSVLTTFTRY 347

Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
           SRLRVIAELRHGDIFHSANIVSSIEFDRDD LFATAGVSRRIKVFDF++VVNEP D HCP
Sbjct: 348 SRLRVIAELRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCP 407

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
           VVEM TRSKLSCLSWNKF+KN+IASSDYEGIVTVWDVTT++S+MEYEEHEKRAWSVDFSR
Sbjct: 408 VVEMSTRSKLSCLSWNKFAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSR 467

Query: 479 TEPSMLVSGSDDCKV 493
           T+PSMLVSGSDDCKV
Sbjct: 468 TDPSMLVSGSDDCKV 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2059359	675	COP1 "CONSTITUTIVE PHOTOMORPHO	0.985	0.722	0.766	6.7e-207
DICTYBASE|DDB_G0288453	970	DDB_G0288453 "E3 ubiquitin-pro	0.343	0.175	0.520	3e-83
UNIPROTKB|H0Y339	566	RFWD2 "E3 ubiquitin-protein li	0.365	0.319	0.441	3.8e-60
ZFIN|ZDB-GENE-070410-134	694	rfwd2 "ring finger and WD repe	0.397	0.283	0.434	2e-44
TAIR|locus:2039139	1029	SPA1 "SUPPRESSOR OF PHYA-105 1	0.286	0.137	0.507	6.8e-42
RGD|1304773	433	Rfwd2 "ring finger and WD repe	0.365	0.418	0.441	3.6e-41
UNIPROTKB|F1NQ64	717	RFWD2 "Uncharacterized protein	0.367	0.253	0.448	8.1e-41
UNIPROTKB|E2RRJ5	733	RFWD2 "Uncharacterized protein	0.365	0.246	0.441	1.5e-40
MGI|MGI:1347046	733	Rfwd2 "ring finger and WD repe	0.365	0.246	0.441	1.5e-40
UNIPROTKB|F1MHX1	735	RFWD2 "Uncharacterized protein	0.365	0.246	0.441	1.5e-40

TAIR|locus:2059359 COP1 "CONSTITUTIVE PHOTOMORPHOGENIC 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2001 (709.4 bits), Expect = 6.7e-207, P = 6.7e-207
 Identities = 378/493 (76%), Positives = 431/493 (87%)

Query:     1 MDEVSTEPVVPAVKPDMKPSSXXXXXXXXXXXXXXXXXXXXXXVGVSELDKDMLCPICMQ 60
             M+E+ST+PVVPAVKPD + SS                      +G  +LDKD+LCPICMQ
Sbjct:     1 MEEISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSE---IGAPDLDKDLLCPICMQ 57

Query:    61 IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
             IIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR +S
Sbjct:    58 IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVS 117

Query:   121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
             KTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct:   118 KTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQ 177

Query:   181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
             KVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +KN
Sbjct:   178 KVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--EKN 235

Query:   241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRK 300
               G  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ RK
Sbjct:   236 QIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARK 295

Query:   301 KRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSR 360
             KR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRYSR
Sbjct:   296 KRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSR 355

Query:   361 LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420
             LRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP+V
Sbjct:   356 LRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIV 415

Query:   421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480
             EM TRSKLSCLSWNK  KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFSRTE
Sbjct:   416 EMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTE 475

Query:   481 PSMLVSGSDDCKV 493
             PSMLVSGSDDCKV
Sbjct:   476 PSMLVSGSDDCKV 488

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IGI;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000152 "nuclear ubiquitin ligase complex" evidence=TAS

GO:0009647 "skotomorphogenesis" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IGI;IMP

GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA;IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009641 "shade avoidance" evidence=IMP

DICTYBASE|DDB_G0288453 DDB_G0288453 "E3 ubiquitin-protein ligase RFWD2" [Dictyostelium discoideum (taxid:44689)]

 Score = 480 (174.0 bits), Expect = 3.0e-83, Sum P(3) = 3.0e-83
 Identities = 89/171 (52%), Positives = 125/171 (73%)

Query:   323 NQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSI 382
             N  ++   +  N I       GL  F   L  FT+Y+  +V+A L++GD+F++++IVSSI
Sbjct:   614 NNTNSNLNNLNNNIESLKVGKGLLSFSRNLLKFTKYNEFKVLATLKYGDLFNTSSIVSSI 673

Query:   383 EFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA 442
             EFDRD++ FATAGV+++IK+F+F S + +  +VH PV EM  RSK+SCLSWN + K++IA
Sbjct:   674 EFDRDEEYFATAGVTKKIKIFEF-SQIRDNVEVHSPVKEMTCRSKISCLSWNTYIKSQIA 732

Query:   443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             SSDYEGI+++WD  T Q++M  EEHEKR WSVDFSRT+P+ L SGSDD +V
Sbjct:   733 SSDYEGIISLWDANTGQNIMTLEEHEKRVWSVDFSRTDPTQLASGSDDTRV 783

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0Y339 RFWD2 "E3 ubiquitin-protein ligase RFWD2" [Homo sapiens (taxid:9606)]

 Score = 435 (158.2 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 87/197 (44%), Positives = 127/197 (64%)

Query:   299 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
             R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTR
Sbjct:   191 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTR 236

Query:   358 YSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
             Y+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H
Sbjct:   237 YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIH 296

Query:   417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
              P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF
Sbjct:   297 YPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF 356

Query:   477 SRTEPSMLVSGSDDCKV 493
             +  +P +L SGSDD KV
Sbjct:   357 NLMDPKLLASGSDDAKV 373

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

ZFIN|ZDB-GENE-070410-134 rfwd2 "ring finger and WD repeat domain 2" [Danio rerio (taxid:7955)]

 Score = 450 (163.5 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
 Identities = 93/214 (43%), Positives = 134/214 (62%)

Query:   284 GSDSQCLNQSGLSVV---RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREG 340
             G +SQ   Q+  +     R+KR+ A F DL++CY   R        ++   D   +++  
Sbjct:   301 GGNSQSKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRM-------SRITDDSRTVNQ-- 351

Query:   341 YNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRR 399
                 L DF   L+ FTRY+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++
Sbjct:   352 ----LDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKK 407

Query:   400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459
             IKVF++ +V+ +  D+H PV EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q
Sbjct:   408 IKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQ 467

Query:   460 SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
                 Y+EHEKR WSVDF+  +P +L SGSDD KV
Sbjct:   468 RSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV 501

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2039139 SPA1 "SUPPRESSOR OF PHYA-105 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
 Identities = 72/142 (50%), Positives = 101/142 (71%)

Query:   352 LTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411
             L  F RYS+      +R GD+ +SA++V S+ FD D++  A AG+S++IK+FDF + +NE
Sbjct:   692 LCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNE 751

Query:   412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA 471
                VH P+VEM  +SKLSC+ WN + KN +AS+DY+G+V +WD  T Q   +Y EH+KRA
Sbjct:   752 SVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRA 811

Query:   472 WSVDFSRTEPSMLVSGSDDCKV 493
             WSVDFS ++P+  VSGSDDC V
Sbjct:   812 WSVDFSPSDPTKFVSGSDDCSV 833

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048575 "short-day photoperiodism, flowering" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP

GO:2000028 "regulation of photoperiodism, flowering" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009585 "red, far-red light phototransduction" evidence=IGI

RGD|1304773 Rfwd2 "ring finger and WD repeat domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/197 (44%), Positives = 127/197 (64%)

Query:   299 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
             R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTR
Sbjct:    58 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTR 103

Query:   358 YSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
             Y+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H
Sbjct:   104 YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIH 163

Query:   417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
              P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF
Sbjct:   164 YPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF 223

Query:   477 SRTEPSMLVSGSDDCKV 493
             +  +P +L SGSDD KV
Sbjct:   224 NLMDPKLLASGSDDAKV 240

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|F1NQ64 RFWD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 439 (159.6 bits), Expect = 8.1e-41, P = 8.1e-41
 Identities = 88/196 (44%), Positives = 125/196 (63%)

Query:   299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
             R+KR+ A F DL++CY   R        T+   D     +      L +FQ  L+ FTRY
Sbjct:   342 RRKRLTAHFEDLEQCYFSTRM-------TRVSDDSRTTSQ------LDEFQECLSKFTRY 388

Query:   359 SRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417
             + +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H 
Sbjct:   389 NSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHY 448

Query:   418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
             P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF+
Sbjct:   449 PENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFN 508

Query:   478 RTEPSMLVSGSDDCKV 493
               +P +L SGSDD KV
Sbjct:   509 LMDPKLLASGSDDAKV 524

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

UNIPROTKB|E2RRJ5 RFWD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 437 (158.9 bits), Expect = 1.5e-40, P = 1.5e-40
 Identities = 87/197 (44%), Positives = 127/197 (64%)

Query:   299 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
             R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTR
Sbjct:   358 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTR 403

Query:   358 YSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
             Y+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H
Sbjct:   404 YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIH 463

Query:   417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
              P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF
Sbjct:   464 YPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF 523

Query:   477 SRTEPSMLVSGSDDCKV 493
             +  +P +L SGSDD KV
Sbjct:   524 NLMDPKLLASGSDDAKV 540

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1347046 Rfwd2 "ring finger and WD repeat domain 2" [Mus musculus (taxid:10090)]

 Score = 437 (158.9 bits), Expect = 1.5e-40, P = 1.5e-40
 Identities = 87/197 (44%), Positives = 127/197 (64%)

Query:   299 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
             R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTR
Sbjct:   358 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTR 403

Query:   358 YSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
             Y+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H
Sbjct:   404 YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIH 463

Query:   417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
              P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF
Sbjct:   464 YPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF 523

Query:   477 SRTEPSMLVSGSDDCKV 493
             +  +P +L SGSDD KV
Sbjct:   524 NLMDPKLLASGSDDAKV 540

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MHX1 RFWD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 437 (158.9 bits), Expect = 1.5e-40, P = 1.5e-40
 Identities = 87/197 (44%), Positives = 127/197 (64%)

Query:   299 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTR 357
             R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTR
Sbjct:   360 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTR 405

Query:   358 YSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416
             Y+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H
Sbjct:   406 YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIH 465

Query:   417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
              P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD  T Q    Y+EHEKR WSVDF
Sbjct:   466 YPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF 525

Query:   477 SRTEPSMLVSGSDDCKV 493
             +  +P +L SGSDD KV
Sbjct:   526 NLMDPKLLASGSDDAKV 542

GO:0005925 "focal adhesion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93471	COP1_PEA	6, ., 3, ., 2, ., -	0.7636	0.9757	0.7187	N/A	no
P43254	COP1_ARATH	6, ., 3, ., 2, ., -	0.7717	0.9818	0.72	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-44
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-09
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-09
smart00184	40	smart00184, RING, Ring finger	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-08
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	2e-08
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	6e-08
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-05
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG5152	259	COG5152, COG5152, Uncharacterized conserved protei	3e-04
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	4e-04
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	9e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score =  166 bits (421), Expect = 2e-44
 Identities = 99/341 (29%), Positives = 178/341 (52%), Gaps = 19/341 (5%)

Query: 151 LSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLY 210
           L E++  ME  +     ++LL+FL  ++++K +   ++Q  +  +  DI+ V + ++   
Sbjct: 275 LEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDTISLLSSDIDQVVKRQL--- 331

Query: 211 RARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQ 270
                      +L    +  +S+L+S  +   G  T +       ++  L +       +
Sbjct: 332 -----------VLQQKGSDVRSFLASRKRIRQGAETLAAEEENDDNSSKLDDTLESTLLE 380

Query: 271 ANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQE 330
           ++      K   +   +    Q   +   +K +   ++ L E      +   + P     
Sbjct: 381 SSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSSEKSSMSNP----A 436

Query: 331 SDKNIIHREGYNAGLAD-FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ 389
              +    +    G  D F   L  +  +S+LRV A+L+ GD+ +S+N+V +I FDRD +
Sbjct: 437 KPPDFYINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE 496

Query: 390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI 449
            FATAGV+++IK+F+  S++ +  D+H PVVE+ +RSKLS + WN + K+++ASS++EG+
Sbjct: 497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGV 556

Query: 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
           V VWDV   Q V E +EHEKR WS+D+S  +P++L SGSDD
Sbjct: 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597

Length = 793

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 51 KDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGH 94
          +++ CPIC+ ++++   LT CGH FC  CI+ +L+ KS CP C  
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA--DVHCPVVEMPTRSKLSCLSWNKF 436
           VSS+ F  D ++ +++   + IKV+D  +             V         + ++++  
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV---------NSVAFSPD 146

Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
               +ASS  +G + +WD+ T + V     H     SV FS     +L S SD  
Sbjct: 147 GT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           V+S+ F  D +   ++     IK++D ++           +      + ++ ++++    
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST-----GKCLGTLRGH--ENGVNSVAFS-PDG 231

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             +AS   +G + VWD+ T + V     H     S+ +S  +   L SGS D  +
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-PDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 55 CPICMQIIKEAF-LTACGHSFCYMCIITHLR-NKSDCPCC 92
          CPIC++  +E   L  CGH FC  CI   L+  K+ CP C
Sbjct: 2  CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLC 41

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 55 CPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCC 92
          CPIC++  K+      CGH FC  CI++ L + +  CP C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 55 CPICMQ-IIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
          CPIC++  +K+  +  CGH+FC  CI   L + ++ CP C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           V+ + F  D +L AT      IKV+D    +     +            ++  +   +  
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWD----LETGELLRTLKGHTGPVRDVAASADGTY-- 65

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             +AS   +  + +WD+ T + V     H     SV FS     +L S S D  +
Sbjct: 66  --LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTI 117

Length = 289

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 55 CPICMQII---KEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
          CPIC+      +E  +  CGH F   C+   LR+ + CP C
Sbjct: 3  CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLC 43

Length = 46

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 40 STSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           T    +  LD  + C IC   I     T CGH+FC +CI  HL  +  CP C
Sbjct: 13 QTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVC 65

Length = 391

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLD 108
           LD  + C IC        LT+C H+FC +CI   L N+  CP C      ++L  N+L+ 
Sbjct: 23  LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVS 82

Query: 109 KLLKK-TSAR 117
           ++++   + R
Sbjct: 83  EIVESFKNLR 92

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 51 KDMLCPICMQIIKEAFLTACGH-SFCYMCIITHLRNKSDCPCC 92
          +D LC IC++  +      CGH   C  C    LR+K  CP C
Sbjct: 1  EDDLCVICLERPRNVVFLPCGHLCLCEEC-AKRLRSKKKCPIC 42

Length = 49

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 52  DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL 107
           + LCPI ++++K+  +   G ++    I   L +    P  G  LT+  L PN  L
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHGTDPVTGQPLTHEDLIPNLAL 56

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS 437
           VSS+ F  D   L A+      I+++D ++       +    +   + S +S  S +   
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-----GKLLRSTLSGHSDSVVSSFSPDG-- 253

Query: 438 KNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            + +AS   +G + +WD+ ++   +     H     SV FS  +  +L SGS D  V
Sbjct: 254 -SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTV 308

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 371 DIFHSANIVSSIEFDRDDQLFATAGVS--RRIKVFDFASVVNEPADVHCPVVEMPTRSKL 428
           +  H +++        D      A  S    +K++D ++       +            +
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL------EGHSESV 158

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488
           + L+++   K   + S  +G + +WD+ T + +     H     S+ FS     ++ SGS
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 489 DDCKV 493
            D  +
Sbjct: 219 SDGTI 223

Length = 466

>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 50  DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDK 109
               LC IC +  +   +T CGHSFC +C I   +   +C  CG   T  + +    L K
Sbjct: 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA-TYGRFWVVSDLQK 252

Query: 110 LLKK 113
           +L K
Sbjct: 253 MLNK 256

Length = 259

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 21/137 (15%)

Query: 52  DMLCPICMQIIKEAFLTACGHSFCYMCI----------------ITHLRNKSDCPCCGHY 95
           D  C IC+  +++  +T CGH FC+ CI                  H R    CP C   
Sbjct: 18  DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77

Query: 96  LTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQ-GCGVSVKEI----DSLMSL 150
           ++   L P +   +   ++ +   S+ + P+ + R   Q+ G G S + +    D +M +
Sbjct: 78  VSEATLVPIYGRGQKAPQSGSNVPSRPSGPVYDLRGVGQRLGEGESQRYMYRMPDPVMGV 137

Query: 151 LSEKKRKMEQEEAERNM 167
           + E   +    E+  NM
Sbjct: 138 VCEMVYRRLFGESSSNM 154

Length = 193

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 52  DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS--DCPCC 92
           D  C +C++  +    T CGH FC  C++     K    CP C
Sbjct: 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLC 257

Length = 271

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 48  ELDKDMLCPICMQI-----IKEAF---LTACGHSFCYMCIITHLRNKSDCPCC 92
              KD  C ICM+      IK  +   L+ C H FC  CI    + K+ CP C
Sbjct: 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVC 222

Length = 238

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.002
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           V S+ F  D +L A+      ++++D  +       +   +        +S LS++    
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETG-----KLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
             ++    +G + +WD+ T + +   E H     SV FS     +    +D 
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.002
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 377 NIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK 435
             V+S+ F  D +L A+   +   IK++D  +                    +S L+++ 
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------KPLSTLAGHTDPVSSLAFSP 208

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
                IAS   +G + +WD++T + +         +    FS    S+L SGS D  +
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG-SLLASGSSDGTI 265

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.88
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.87
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.87
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.86
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
KOG0286	343	consensus G-protein beta subunit [General function	99.83
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.83
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.82
KOG0286	343	consensus G-protein beta subunit [General function	99.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.8
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.79
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.79
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.79
KOG0266	456	consensus WD40 repeat-containing protein [General	99.78
KOG0266	456	consensus WD40 repeat-containing protein [General	99.78
PTZ00421	493	coronin; Provisional	99.78
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.78
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.78
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.77
KOG0645	312	consensus WD40 repeat protein [General function pr	99.77
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.77
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.77
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.76
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.76
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.76
KOG0645	312	consensus WD40 repeat protein [General function pr	99.75
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.75
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.72
PTZ00420	568	coronin; Provisional	99.72
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.71
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.71
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.71
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.71
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.7
PTZ00421	493	coronin; Provisional	99.7
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.69
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.69
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.69
PTZ00420	568	coronin; Provisional	99.69
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.68
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.68
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.67
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.67
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.67
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.66
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.66
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.66
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.66
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.66
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.65
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.65
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.64
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.64
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.64
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.63
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.63
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.63
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.63
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.62
PLN00181	793	protein SPA1-RELATED; Provisional	99.62
KOG0267	825	consensus Microtubule severing protein katanin p80	99.62
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.62
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.61
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.61
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.61
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.6
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.59
KOG0296	399	consensus Angio-associated migratory cell protein	99.59
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.59
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.58
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.58
KOG0643	327	consensus Translation initiation factor 3, subunit	99.57
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.57
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.57
KOG0643	327	consensus Translation initiation factor 3, subunit	99.56
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.56
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.55
KOG0267	825	consensus Microtubule severing protein katanin p80	99.55
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.55
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.55
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.53
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.53
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.52
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.52
KOG0289	506	consensus mRNA splicing factor [General function p	99.52
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.51
KOG0641	350	consensus WD40 repeat protein [General function pr	99.51
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.51
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.5
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG1273	405	consensus WD40 repeat protein [General function pr	99.49
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.48
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.48
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.47
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.47
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.46
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.46
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.46
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.45
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.45
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.45
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.44
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.44
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.44
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.42
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.42
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.41
KOG0639	705	consensus Transducin-like enhancer of split protei	99.41
KOG0646	476	consensus WD40 repeat protein [General function pr	99.4
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.4
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.4
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.39
KOG0296	399	consensus Angio-associated migratory cell protein	99.39
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.39
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.39
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.39
KOG1274	933	consensus WD40 repeat protein [General function pr	99.39
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.39
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.38
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.37
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.36
KOG4328	498	consensus WD40 protein [Function unknown]	99.36
KOG2096	420	consensus WD40 repeat protein [General function pr	99.35
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	99.35
KOG0639	705	consensus Transducin-like enhancer of split protei	99.35
KOG0641	350	consensus WD40 repeat protein [General function pr	99.34
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.32
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.31
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.3
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.3
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.29
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.28
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.28
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.27
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.27
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.26
KOG1188	376	consensus WD40 repeat protein [General function pr	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.25
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.25
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.24
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.24
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.23
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.23
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.22
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.21
KOG1310	758	consensus WD40 repeat protein [General function pr	99.21
KOG1310	758	consensus WD40 repeat protein [General function pr	99.2
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.19
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.19
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.18
KOG2096	420	consensus WD40 repeat protein [General function pr	99.18
KOG1273	405	consensus WD40 repeat protein [General function pr	99.18
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.17
KOG0646	476	consensus WD40 repeat protein [General function pr	99.17
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.17
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.17
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.16
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.16
PHA02929	238	N1R/p28-like protein; Provisional	99.15
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.15
KOG2048	691	consensus WD40 repeat protein [General function pr	99.14
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	99.14
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.13
KOG1539	910	consensus WD repeat protein [General function pred	99.12
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.12
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.12
KOG1539	910	consensus WD repeat protein [General function pred	99.11
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.11
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.11
KOG1274	933	consensus WD40 repeat protein [General function pr	99.09
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.08
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.06
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.06
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.05
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	99.05
KOG4328	498	consensus WD40 protein [Function unknown]	99.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.03
PF14634	44	zf-RING_5: zinc-RING finger domain	99.02
KOG2048	691	consensus WD40 repeat protein [General function pr	99.01
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.0
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.99
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.99
KOG0649	325	consensus WD40 repeat protein [General function pr	98.98
KOG4367	699	consensus Predicted Zn-finger protein [Function un	98.98
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.98
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.98
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.96
KOG4227	609	consensus WD40 repeat protein [General function pr	98.95
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.95
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.94
PHA02926	242	zinc finger-like protein; Provisional	98.94
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.92
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.9
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.87
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.87
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.83
KOG1188	376	consensus WD40 repeat protein [General function pr	98.83
COG2319	466	FOG: WD40 repeat [General function prediction only	98.82
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.81
KOG4227	609	consensus WD40 repeat protein [General function pr	98.81
KOG2055	514	consensus WD40 repeat protein [General function pr	98.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.78
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.78
KOG0649	325	consensus WD40 repeat protein [General function pr	98.76
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.76
KOG2055	514	consensus WD40 repeat protein [General function pr	98.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.7
COG2319	466	FOG: WD40 repeat [General function prediction only	98.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.69
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.66
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.65
KOG2660	331	consensus Locus-specific chromosome binding protei	98.64
KOG2139	445	consensus WD40 repeat protein [General function pr	98.62
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.62
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.62
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.61
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.57
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.54
KOG2139	445	consensus WD40 repeat protein [General function pr	98.51
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.51
PRK01742	429	tolB translocation protein TolB; Provisional	98.5
KOG4547	541	consensus WD40 repeat-containing protein [General	98.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.49
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.48
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.46
KOG1963	792	consensus WD40 repeat protein [General function pr	98.45
KOG1334	559	consensus WD40 repeat protein [General function pr	98.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.4
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.35
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	98.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.35
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.31
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.31
KOG2321	703	consensus WD40 repeat protein [General function pr	98.31
COG5152	259	Uncharacterized conserved protein, contains RING a	98.3
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.29
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.28
PRK11028	330	6-phosphogluconolactonase; Provisional	98.28
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.27
PRK11028	330	6-phosphogluconolactonase; Provisional	98.25
KOG2695	425	consensus WD40 repeat protein [General function pr	98.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.23
PRK01742	429	tolB translocation protein TolB; Provisional	98.22
PRK05137	435	tolB translocation protein TolB; Provisional	98.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.16
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.15
KOG1334	559	consensus WD40 repeat protein [General function pr	98.14
PRK02889	427	tolB translocation protein TolB; Provisional	98.13
KOG4739	233	consensus Uncharacterized protein involved in syna	98.13
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.13
PRK04922	433	tolB translocation protein TolB; Provisional	98.1
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
KOG0297	391	consensus TNF receptor-associated factor [Signal t	98.08
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.06
PRK03629	429	tolB translocation protein TolB; Provisional	98.04
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.02
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.99
KOG1963	792	consensus WD40 repeat protein [General function pr	97.97
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.92
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.9
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.85
KOG2315	566	consensus Predicted translation initiation factor	97.84
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.84
KOG2321	703	consensus WD40 repeat protein [General function pr	97.83
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.79
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.77
PRK04792	448	tolB translocation protein TolB; Provisional	97.76
PRK00178	430	tolB translocation protein TolB; Provisional	97.76
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.71
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.68
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.66
PRK03629	429	tolB translocation protein TolB; Provisional	97.65
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.64
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.64
PRK02889	427	tolB translocation protein TolB; Provisional	97.59
PRK05137	435	tolB translocation protein TolB; Provisional	97.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.53
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.51
PRK04922	433	tolB translocation protein TolB; Provisional	97.48
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	97.44
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.44
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.41
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.39
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.39
KOG2695	425	consensus WD40 repeat protein [General function pr	97.35
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.34
KOG4547	541	consensus WD40 repeat-containing protein [General	97.3
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.3
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.29
PF04641	260	Rtf2: Rtf2 RING-finger	97.27
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.22
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.21
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.16
PRK01029	428	tolB translocation protein TolB; Provisional	97.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.16
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.14
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.09
PRK01029	428	tolB translocation protein TolB; Provisional	97.03
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.02
PRK00178	430	tolB translocation protein TolB; Provisional	97.01
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.98
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
PRK04792	448	tolB translocation protein TolB; Provisional	96.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.92
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.92
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.9
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	96.85
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.84
COG4946	668	Uncharacterized protein related to the periplasmic	96.82
KOG1001	674	consensus Helicase-like transcription factor HLTF/	96.76
KOG1409	404	consensus Uncharacterized conserved protein, conta	96.76
KOG3621	726	consensus WD40 repeat-containing protein [General	96.74
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.71
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	96.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.54
COG4946	668	Uncharacterized protein related to the periplasmic	96.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.49
KOG2314	698	consensus Translation initiation factor 3, subunit	96.49
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.45
PRK04043	419	tolB translocation protein TolB; Provisional	96.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.33
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.31
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.29
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.18
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	96.14
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.1
KOG3002	299	consensus Zn finger protein [General function pred	96.09
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.04
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.99
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.99
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.74
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.74
KOG2315	566	consensus Predicted translation initiation factor	95.66
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.58
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	95.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.4
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.39
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.26
KOG3621	726	consensus WD40 repeat-containing protein [General	95.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.91
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.9
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.89
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.79
PRK04043	419	tolB translocation protein TolB; Provisional	94.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.7
KOG2314	698	consensus Translation initiation factor 3, subunit	94.61
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	94.59
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.59
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	94.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	94.37
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.36
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.31
KOG0298	1394	consensus DEAD box-containing helicase-like transc	94.26
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.19
KOG2444	238	consensus WD40 repeat protein [General function pr	94.12
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	94.1
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.93
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	93.78
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	93.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.57
PHA03096	284	p28-like protein; Provisional	93.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.48
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.44
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	93.27
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	93.08
COG5109	396	Uncharacterized conserved protein, contains RING Z	93.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.85
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.8
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	92.79
KOG1940	276	consensus Zn-finger protein [General function pred	92.72
PHA02825	162	LAP/PHD finger-like protein; Provisional	92.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.65
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	92.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.59
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.57
PRK13616	591	lipoprotein LpqB; Provisional	92.55
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.42
KOG1912	1062	consensus WD40 repeat protein [General function pr	92.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.24
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	92.06
PHA02562	562	46 endonuclease subunit; Provisional	92.02
KOG4445	368	consensus Uncharacterized conserved protein, conta	91.65
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.6
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	91.59
KOG3113	293	consensus Uncharacterized conserved protein [Funct	91.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.39
PHA02862	156	5L protein; Provisional	91.28
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	91.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	90.97
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	90.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.83
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.79
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	90.78
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.65
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.64
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.57
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.36
PRK02888	635	nitrous-oxide reductase; Validated	90.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.21
PRK02888	635	nitrous-oxide reductase; Validated	90.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.16
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.09
KOG2395	644	consensus Protein involved in vacuole import and d	88.48
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	88.29
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	88.25
COG3391	381	Uncharacterized conserved protein [Function unknow	87.98
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.54
TIGR01562	305	FdhE formate dehydrogenase accessory protein FdhE.	87.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	86.96
KOG2979	262	consensus Protein involved in DNA repair [General	86.75
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	86.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	86.54
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	86.36
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	86.21
PRK02224	880	chromosome segregation protein; Provisional	86.14
PF04216	290	FdhE: Protein involved in formate dehydrogenase fo	86.13
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.04
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	85.91
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	85.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.49
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	85.47
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	85.06
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.99
PF08606	70	Prp19: Prp19/Pso4-like; InterPro: IPR013915 This r	84.89
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.67
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	84.31
KOG2444	238	consensus WD40 repeat protein [General function pr	84.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	83.82
KOG0825	1134	consensus PHD Zn-finger protein [General function	83.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.72
PRK10884	206	SH3 domain-containing protein; Provisional	83.3
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	83.16
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.11
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	83.07

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5.2e-32  Score=250.70  Aligned_cols=381  Identities=16%  Similarity=0.134  Sum_probs=240.6

Q ss_pred             cccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhhhccCCCchhhhhh
Q 048199           53 MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQ  131 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~~~~~~~~~~~~~~  131 (495)
                      +.|.|.++++++||+. ..||+|.++.|++|+...++||+.+++++.++|++...-..      ..+.++++..++.+..
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~------v~pk~~satSIPalL~   74 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQ------VRPKPPSATSIPALLK   74 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccccc------ccCCCCCccchHHHHH
Confidence            5799999999999966 59999999999999999999999999999998877654322      2455677888999999


Q ss_pred             hhhhccCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Q 048199          132 ALQQGCGVSVKEIDSLMSLLSEKKRKMEQEE------------AERNMQILLDFLHCLRKQKVDE----------LKEIQ  189 (495)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~----------l~~~~  189 (495)
                      .+|.+|+..+.+-..+.+.|+..+++|.+..            ...+...-++.|.....+.-..          .....
T Consensus        75 ~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~  154 (506)
T KOG0289|consen   75 TLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVG  154 (506)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhh
Confidence            9999999999999999999999999998611            1122222233332222111100          00000


Q ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHhccCCCccccccccccCCCCCCcccccccCCCCCCCCcccc
Q 048199          190 TDLH-------YIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQN  262 (495)
Q Consensus       190 ~~~~-------~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (495)
                      .+..       .-.+-+..++.+.+.|.+.+++..+.+.......   +.+... -...++...++....+..+...   
T Consensus       155 va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~---d~~~~~-~q~ash~gLH~t~~pgi~ald~---  227 (506)
T KOG0289|consen  155 VAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATT---DELSCL-LQVASHTGLHSTSTPGITALDI---  227 (506)
T ss_pred             hhcCCccccccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccH---HHHHHH-HhcCCCcceeccCCCCeeEEee---
Confidence            0000       1123345555666666666665533321111000   000000 0000001111111111110000   


Q ss_pred             ccCCCccccccCCCCCCCCCCCCCCccccccchhhHhHhHHHHhHhHHHHHHHHHhhhhccCCCCccccc-cccccccCc
Q 048199          263 KKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESD-KNIIHREGY  341 (495)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~  341 (495)
                         .........|.......            +......+++.                .+.++...+.. ....+....
T Consensus       228 ---~~s~~~ilTGG~d~~av------------~~d~~s~q~l~----------------~~~Gh~kki~~v~~~~~~~~v  276 (506)
T KOG0289|consen  228 ---IPSSSKILTGGEDKTAV------------LFDKPSNQILA----------------TLKGHTKKITSVKFHKDLDTV  276 (506)
T ss_pred             ---cCCCCcceecCCCCceE------------EEecchhhhhh----------------hccCcceEEEEEEeccchhhe
Confidence               00000001111111100            01111122222                22333333332 223344556


Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE  421 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  421 (495)
                      .+++.|+.+++|.....+   ....+.     .|.++|+.+..||.|.||++++.|+++.+.|++++        .....
T Consensus       277 ~~aSad~~i~vws~~~~s---~~~~~~-----~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g--------~~lt~  340 (506)
T KOG0289|consen  277 ITASADEIIRVWSVPLSS---EPTSSR-----PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG--------SQLTV  340 (506)
T ss_pred             eecCCcceEEeecccccc---Cccccc-----cccccceeeeeccCCcEEEEecCCceEEEEEccCC--------cEEEE
Confidence            789999999999875322   112222     68999999999999999999999999999999998        22232


Q ss_pred             cCC---CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          422 MPT---RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       422 ~~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+   .-.+++.+|||| |.+|++|..||.|+|||+.++..+..|.+|+++|..++|+. ||++|+++++|+.|++
T Consensus       341 vs~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~l  415 (506)
T KOG0289|consen  341 VSDETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKL  415 (506)
T ss_pred             EeeccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEE
Confidence            223   235899999999 99999999999999999999999999999999999999999 9999999999998874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=4e-25  Score=204.68  Aligned_cols=141  Identities=18%  Similarity=0.238  Sum_probs=128.7

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ...+++++.|+++++|++.   ...++.++.     ||...|..++|||+|++|+|++.|.++++||+.++       ..
T Consensus       231 ~~~lat~s~Dgtvklw~~~---~e~~l~~l~-----gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-------~E  295 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLS---QETPLQDLE-----GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-------SE  295 (459)
T ss_pred             ccceeeeccCCceeeeccC---CCcchhhhh-----cchhhheeeeecCCCceeeecccccchhhcccccc-------hh
Confidence            4468899999999999984   335566665     99999999999999999999999999999999997       34


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....-+|...|.+++|+|| |.+++||+.|..-+|||+++|.++..|.||.+.|.+|+|+| ||++|||||.|+++||
T Consensus       296 lL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kV  371 (459)
T KOG0272|consen  296 LLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKV  371 (459)
T ss_pred             hHhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEE
Confidence            4566689999999999999 99999999999999999999999999999999999999999 9999999999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.2e-22  Score=184.28  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=133.6

Q ss_pred             hhhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC
Q 048199          318 RRQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV  396 (495)
Q Consensus       318 r~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~  396 (495)
                      |+.....+|...+.+.. .+++..+++|+.|.++++||+   +...++.+++     +|...|.+++|+|||..||+|+.
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~---~TeTp~~t~K-----gH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL---DTETPLFTCK-----GHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeecc---CCCCcceeec-----CCccEEEEEEECCCcchhhcccc
Confidence            34444555655544444 356788999999999999998   3445677777     99999999999999999999999


Q ss_pred             CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC----CCEEEEecCCCcEEEEeCCCCcceeecccccCcEE
Q 048199          397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW  472 (495)
Q Consensus       397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~  472 (495)
                      ||+|++||..++...      -....+|...|++++|.|-+    ..+|++++.||+|+|||+..+.++..+.||+.+|+
T Consensus       178 dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             CCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            999999999887111      11233688899999998752    45899999999999999999999999999999999


Q ss_pred             EEEeecCCCCeEEEeeCCCcEeC
Q 048199          473 SVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       473 ~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||.|-.  ..+|+|||.|++|||
T Consensus       252 CvrwGG--~gliySgS~DrtIkv  272 (480)
T KOG0271|consen  252 CVRWGG--EGLIYSGSQDRTIKV  272 (480)
T ss_pred             EEEEcC--CceEEecCCCceEEE
Confidence            999974  469999999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.87  E-value=4.2e-22  Score=198.22  Aligned_cols=151  Identities=19%  Similarity=0.205  Sum_probs=133.8

Q ss_pred             CccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 048199          327 TKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA  406 (495)
Q Consensus       327 ~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~  406 (495)
                      .++......++...+.+.+.|+++++|.+..   ...+...+     ||..+|+++.|+|-|-+|||+|.|++.++|..+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t---~s~~V~y~-----GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---WSCLVIYK-----GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeeccc---ceeEEEec-----CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            3455556667778889999999999999853   34455555     899999999999999999999999999999998


Q ss_pred             ccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199          407 SVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       407 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~  485 (495)
                      ..        .|.. ..+|.+.|.|+.|||+ .+|+++||.|.+|++||+.+|..++.|.||.++|.+|+|+| +|.+|+
T Consensus       524 ~~--------~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~La  593 (707)
T KOG0263|consen  524 HN--------KPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLA  593 (707)
T ss_pred             cC--------CchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEe
Confidence            86        4443 3478899999999999 99999999999999999999999999999999999999999 999999


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      ||+.||.|+|
T Consensus       594 Sg~ed~~I~i  603 (707)
T KOG0263|consen  594 SGDEDGLIKI  603 (707)
T ss_pred             ecccCCcEEE
Confidence            9999999975

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.2e-21  Score=181.65  Aligned_cols=147  Identities=16%  Similarity=0.180  Sum_probs=132.9

Q ss_pred             ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      ..+..+++...+|+-|..-+|||+.   ..+.+..+.     +|...|.+++|+|+|-.+||||.|.+++|||++..   
T Consensus       309 iaf~~DGSL~~tGGlD~~~RvWDlR---tgr~im~L~-----gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---  377 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGLDSLGRVWDLR---TGRCIMFLA-----GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---  377 (459)
T ss_pred             eEecCCCceeeccCccchhheeecc---cCcEEEEec-----ccccceeeEeECCCceEEeecCCCCcEEEeeeccc---
Confidence            3445788889999999999999983   456677777     89999999999999999999999999999999986   


Q ss_pred             CCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          412 PADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       412 ~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                           ..+..+ .|.+-|+.|.|+|..|.+|+|+++|++++||..++..+++++.||++.|.++++++ |+.+++|+|.|
T Consensus       378 -----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~D  451 (459)
T KOG0272|consen  378 -----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFD  451 (459)
T ss_pred             -----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccC
Confidence                 334444 68888999999997799999999999999999999999999999999999999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      +++|+
T Consensus       452 RT~KL  456 (459)
T KOG0272|consen  452 RTIKL  456 (459)
T ss_pred             ceeee
Confidence            99986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=5.6e-22  Score=181.65  Aligned_cols=143  Identities=19%  Similarity=0.297  Sum_probs=127.0

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      .++.+++|++|+++.+|+...  ..+++..+.     ||...|..+.|+||+.++|++|.|++||+||-+++       +
T Consensus       335 ~~erlVSgsDd~tlflW~p~~--~kkpi~rmt-----gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-------k  400 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFK--SKKPITRMT-----GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-------K  400 (480)
T ss_pred             CcceeEEecCCceEEEecccc--cccchhhhh-----chhhheeeEEECCCccEEEEeecccceeeeeCCCc-------c
Confidence            347799999999999999742  223444444     89999999999999999999999999999999998       3


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......+|-+.|+.++|+.| ..+|+||+.|.++++||+++.+....+.||.+.|++++|+| ||..+++|+.|..++|
T Consensus       401 ~lasfRGHv~~VYqvawsaD-sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~l  477 (480)
T KOG0271|consen  401 FLASFRGHVAAVYQVAWSAD-SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRL  477 (480)
T ss_pred             hhhhhhhccceeEEEEeccC-ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEe
Confidence            44445578899999999999 89999999999999999999999999999999999999999 9999999999999885

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.86  E-value=1.2e-21  Score=195.14  Aligned_cols=145  Identities=18%  Similarity=0.302  Sum_probs=128.2

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +.+-+-.+++|+.|.+.++|....   ..++..+.     ||.+-|.|+.|||+++|++|||.|++||+||+.++     
T Consensus       501 F~P~GyYFatas~D~tArLWs~d~---~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-----  567 (707)
T KOG0263|consen  501 FAPRGYYFATASHDQTARLWSTDH---NKPLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-----  567 (707)
T ss_pred             ecCCceEEEecCCCceeeeeeccc---CCchhhhc-----ccccccceEEECCcccccccCCCCceEEEEEcCCC-----
Confidence            334566789999999999998743   33343333     89999999999999999999999999999999998     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                        ...-...+|.++|.+++|+|+ |.+|++|+.||.|++||+.++..+..+.+|++.|+++.|+. +|.+||+||.|.+|
T Consensus       568 --~~VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  568 --NSVRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSV  643 (707)
T ss_pred             --cEEEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeE
Confidence              333344589999999999999 99999999999999999999999999999999999999999 99999999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ++
T Consensus       644 ~l  645 (707)
T KOG0263|consen  644 RL  645 (707)
T ss_pred             EE
Confidence            75

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=5.4e-19  Score=192.46  Aligned_cols=197  Identities=39%  Similarity=0.715  Sum_probs=144.4

Q ss_pred             hhHhHhHHHHhHhHHHHHHHHHhhhhccCC---CCccccc----------------cc-------cccccCcccchh---
Q 048199          296 SVVRKKRVHAQFNDLQECYLQKRRQMANQP---HTKQESD----------------KN-------IIHREGYNAGLA---  346 (495)
Q Consensus       296 ~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~---~~~~~~~----------------~~-------~~~~~~~~~g~~---  346 (495)
                      ...+..||+.+|.+++++||..|.......   .......                ..       ............   
T Consensus       377 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (793)
T PLN00181        377 TLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFL  456 (793)
T ss_pred             cchhhhHHHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence            344589999999999999999987542211   0000000                00       000001000011   


Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS  426 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  426 (495)
                      ++-+++|++   ........++.+++.+|.+.|.+++|+|++++|++||.|++|+|||+..........+.++..+.+..
T Consensus       457 ~gl~~~~~~---~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~  533 (793)
T PLN00181        457 EGLCKYLSF---SKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS  533 (793)
T ss_pred             hhhhhhhcc---cceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC
Confidence            334566665   44455666677788889999999999999999999999999999998653222122234555556677


Q ss_pred             CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+.+++|++..+.+|++|+.||+|+|||+.++..+..+.+|.+.|++++|+|.++.+|+|||.|++|+|
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i  602 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL  602 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence            899999998768899999999999999999999999999999999999999757899999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.83  E-value=3.6e-20  Score=164.50  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=126.9

Q ss_pred             cCCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEE
Q 048199          323 NQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIK  401 (495)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~  401 (495)
                      +.+|.....+-.+.+...+.+|+.|.+..+||+.   +...+..+.     ||++-|.+|++.| +++.|++|+-|++.+
T Consensus       141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie---~g~~~~~f~-----GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE---TGQQTQVFH-----GHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             ecCccceeEEEEEcCCCceEecCCCceEEEEEcc---cceEEEEec-----CCcccEEEEecCCCCCCeEEeccccccee
Confidence            3456666666667778888999999999999994   334455555     9999999999999 999999999999999


Q ss_pred             EEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc---------------------
Q 048199          402 VFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS---------------------  460 (495)
Q Consensus       402 vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~---------------------  460 (495)
                      +||++.+       .......+|.+.|+++.|+|+ |.-|++|+.|++.++||++..+.                     
T Consensus       213 lWD~R~~-------~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  213 LWDVRSG-------QCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             eeeccCc-------ceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            9999997       344455578888888888888 77788888888888887765433                     


Q ss_pred             -----------------------eeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          461 -----------------------VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       461 -----------------------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                                             +..+.||+++|.++..+| ||.-++|||+|.++||
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRI  341 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheee
Confidence                                   334467999999999999 9999999999999886

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.83  E-value=3.9e-20  Score=163.31  Aligned_cols=153  Identities=19%  Similarity=0.223  Sum_probs=126.2

Q ss_pred             CCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199          326 HTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       326 ~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd  404 (495)
                      |...+.+.. ..++....+|+.|.++++||+..   ......+.     ||+.-|.+++|+||...++|||.|++|++|+
T Consensus        62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~---g~~t~~f~-----GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT---GESTRRFV-----GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             cceEecceEEccCCceEEeccccceEEEEEecC---CcEEEEEE-----ecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            344333333 34566778999999999999853   13333333     9999999999999999999999999999999


Q ss_pred             ccccccCCCCcCCCeee--cCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199          405 FASVVNEPADVHCPVVE--MPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       405 ~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                      +-..        +....  ..+.+.|+++.|+|.. ..+|++++.|++|++||+++.+....|.||.+.++.+.++| ||
T Consensus       134 t~g~--------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DG  204 (315)
T KOG0279|consen  134 TLGV--------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DG  204 (315)
T ss_pred             eccc--------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CC
Confidence            9876        22222  2236789999999984 67999999999999999999999999999999999999999 99


Q ss_pred             CeEEEeeCCCcEeC
Q 048199          482 SMLVSGSDDCKVLY  495 (495)
Q Consensus       482 ~~l~s~s~D~~v~l  495 (495)
                      ..+++|+.||.+.+
T Consensus       205 slcasGgkdg~~~L  218 (315)
T KOG0279|consen  205 SLCASGGKDGEAML  218 (315)
T ss_pred             CEEecCCCCceEEE
Confidence            99999999998754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.82  E-value=9.9e-21  Score=174.91  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=127.5

Q ss_pred             ccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199          328 KQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS  407 (495)
Q Consensus       328 ~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~  407 (495)
                      ......+..++.-+.+|..++.|++|+..-    ..+..+..    +|...|++++|+|++..|+|+|.|++|+|||+..
T Consensus       140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----nnVk~~~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNM----NNVKIIQA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             cceeEEEccCCCEEEEcCCCceEEecccch----hhhHHhhH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            344445566777789999999999999731    11222221    5679999999999999999999999999999988


Q ss_pred             cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      .       .......+|.-.|.+++|||. ..+|++|+.|..|++||.++|.++.++.+|...|..+.|++ ++.+|+|+
T Consensus       212 ~-------kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~  282 (464)
T KOG0284|consen  212 P-------KEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTG  282 (464)
T ss_pred             C-------chhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEc
Confidence            7       222333578888999999999 88999999999999999999999999999999999999999 99999999


Q ss_pred             eCCCcEeC
Q 048199          488 SDDCKVLY  495 (495)
Q Consensus       488 s~D~~v~l  495 (495)
                      |.|..++|
T Consensus       283 skD~~~kv  290 (464)
T KOG0284|consen  283 SKDQSCKV  290 (464)
T ss_pred             cCCceEEE
Confidence            99998875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.81  E-value=1.9e-19  Score=159.92  Aligned_cols=115  Identities=22%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +.+|++.+.+..|-+ ...|+|+|.|.+..+||++++       .......+|.+.|.++++.|.+++.|+||+-|++-+
T Consensus       141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g-------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG-------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc-------eEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            458999999999987 456669999999999999998       233344479999999999995599999999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +||++.+.++++|.+|+..|++|.|.| +|.-++|||+|++.|+
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRl  255 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRL  255 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEE
Confidence            999999999999999999999999999 9999999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.6e-19  Score=174.96  Aligned_cols=145  Identities=21%  Similarity=0.277  Sum_probs=125.4

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      +..-.+.++++|.++++|+..  ......+++.     ||+..|.+++|+| |.+.|+++|.|+||+||.+...      
T Consensus       107 Pt~P~vLtsSDDm~iKlW~we--~~wa~~qtfe-----GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------  173 (794)
T KOG0276|consen  107 PTLPYVLTSSDDMTIKLWDWE--NEWACEQTFE-----GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------  173 (794)
T ss_pred             CCCCeEEecCCccEEEEeecc--CceeeeeEEc-----CcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------
Confidence            334557899999999999986  4455566665     9999999999999 7789999999999999999886      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ..-....+|..+|++++|-+- +..+|+||+.|.+|+|||..+..|++++.||...|..+.|+| .-.+++|||.||+|
T Consensus       174 -~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  174 -HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTV  251 (794)
T ss_pred             -CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccE
Confidence             222333479999999999654 256999999999999999999999999999999999999999 88899999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ||
T Consensus       252 ri  253 (794)
T KOG0276|consen  252 RI  253 (794)
T ss_pred             EE
Confidence            86

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=5.2e-19  Score=174.72  Aligned_cols=153  Identities=21%  Similarity=0.393  Sum_probs=134.6

Q ss_pred             CCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          325 PHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       325 ~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      .|++.++.... .+...+++|+.|.+.+||++.   ....+.++.     ||+..|+++.|+|..++++|+|.|+|||||
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le---~~~l~~vLs-----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE---QLRLLGVLS-----GHTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeeccc---CceEEEEee-----CCccceEEEEeccccceeEeccCCceEEEE
Confidence            45566666554 455667899999999999984   556677777     999999999999999999999999999999


Q ss_pred             EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199          404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      .+.+.       .+....-+|...|..+.|-.+ +..|+|++.||-|++|+++++.|+.++.+|+++||+++-++ .+.+
T Consensus       533 ~is~f-------SClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~  603 (775)
T KOG0319|consen  533 SISTF-------SCLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDM  603 (775)
T ss_pred             Eeccc-------eeeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccce
Confidence            99997       444455579999999999888 89999999999999999999999999999999999999999 8889


Q ss_pred             EEEeeCCCcEe
Q 048199          484 LVSGSDDCKVL  494 (495)
Q Consensus       484 l~s~s~D~~v~  494 (495)
                      ++||+.||.|-
T Consensus       604 ~~tgg~Dg~i~  614 (775)
T KOG0319|consen  604 FVTGGGDGRII  614 (775)
T ss_pred             eEecCCCeEEE
Confidence            99999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.79  E-value=5.4e-19  Score=156.12  Aligned_cols=144  Identities=15%  Similarity=0.171  Sum_probs=121.7

Q ss_pred             cccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ....+.+++.|.++.+|++.+-+.  ..++..+.     ||...|.++..+++|++++++|.|+++|+||+.++      
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------   95 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------   95 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEccCCceEEeccccceEEEEEecCC------
Confidence            346678899999999999865322  12333344     89999999999999999999999999999999997      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--cCcEEEEEeecCC--CCeEEEeeCC
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTE--PSMLVSGSDD  490 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~--g~~l~s~s~D  490 (495)
                       .......+|...|.+++|++| ...|+||+.|.+|++||+. |.+..++..+  +++|.+|.|+| +  ..+|+++|.|
T Consensus        96 -~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP-~~~~p~Ivs~s~D  171 (315)
T KOG0279|consen   96 -ESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSP-NESNPIIVSASWD  171 (315)
T ss_pred             -cEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcC-CCCCcEEEEccCC
Confidence             344556689999999999999 8899999999999999987 6666666554  78999999999 5  6799999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      ++||+
T Consensus       172 ktvKv  176 (315)
T KOG0279|consen  172 KTVKV  176 (315)
T ss_pred             ceEEE
Confidence            99985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.79  E-value=7.5e-19  Score=165.35  Aligned_cols=147  Identities=16%  Similarity=0.265  Sum_probs=120.8

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..+.+...+++.+-|..+.++.+   +...++.++.     ||.+.|.+|.|+|.+.+|+|+|.|+|++||.....    
T Consensus       324 VdW~~~~~F~ts~td~~i~V~kv---~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----  391 (524)
T KOG0273|consen  324 VDWQSNDEFATSSTDGCIHVCKV---GEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----  391 (524)
T ss_pred             eEEecCceEeecCCCceEEEEEe---cCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----
Confidence            44555566666666766777666   3334454444     99999999999999999999999999999997765    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCC--------CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFS--------KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML  484 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~--------~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l  484 (495)
                         .+......|...|+.+.|+|.+        +..|++++.|++|++||+..|.++.+|..|..+|++|+|+| +|.++
T Consensus       392 ---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~yl  467 (524)
T KOG0273|consen  392 ---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYL  467 (524)
T ss_pred             ---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEE
Confidence               2223334577778888888863        56899999999999999999999999999999999999999 99999


Q ss_pred             EEeeCCCcEeC
Q 048199          485 VSGSDDCKVLY  495 (495)
Q Consensus       485 ~s~s~D~~v~l  495 (495)
                      |+|+.||.|.|
T Consensus       468 AsGs~dg~V~i  478 (524)
T KOG0273|consen  468 ASGSLDGCVHI  478 (524)
T ss_pred             EecCCCCeeEe
Confidence            99999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.8e-18  Score=175.57  Aligned_cols=147  Identities=20%  Similarity=0.267  Sum_probs=127.6

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .+..++..+++|++|.+++||++.  .....+.+++     +|...|++++|+|+++++++|+.|++|+|||+.++    
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~--~~~~~~~~l~-----gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----  278 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLK--DDGRNLKTLK-----GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----  278 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeecc--CCCeEEEEec-----CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----
Confidence            344566688999999999999993  3345567777     99999999999999999999999999999999986    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCc--EEEEEeecCCCCeEEEee
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKR--AWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~--v~~v~~~~~~g~~l~s~s  488 (495)
                         ......-+|.++|++++|+++ +++|++++.|+.|+|||+.++.  ++..+.++...  ++++.|+| ++.+|++++
T Consensus       279 ---~~~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~  353 (456)
T KOG0266|consen  279 ---ECVRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSAS  353 (456)
T ss_pred             ---eEEEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEec
Confidence               233344468889999999999 9999999999999999999999  67888887665  99999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|+.+++
T Consensus       354 ~d~~~~~  360 (456)
T KOG0266|consen  354 LDRTLKL  360 (456)
T ss_pred             CCCeEEE
Confidence            9999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.1e-18  Score=177.32  Aligned_cols=150  Identities=17%  Similarity=0.215  Sum_probs=126.8

Q ss_pred             ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .....++..+..++.|..+++|....... ..+..+     .+|...|++++|+|++.++++++.|++|+|||+...   
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l-----~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---  235 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL-----SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---  235 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc-----cccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence            34556677788888899999999833221 123333     389999999999999999999999999999999432   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                         ........+|...|++++|+|+ ++.+++|+.|++|+|||+++++++..+.+|.+.|.+++|++ ++.+|++++.|+
T Consensus       236 ---~~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~  310 (456)
T KOG0266|consen  236 ---GRNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDG  310 (456)
T ss_pred             ---CeEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCc
Confidence               0233444589999999999999 69999999999999999999999999999999999999999 999999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|+|
T Consensus       311 ~i~v  314 (456)
T KOG0266|consen  311 TIRV  314 (456)
T ss_pred             cEEE
Confidence            9985

>PTZ00421 coronin; Provisional

Probab=99.78  E-value=1.6e-18  Score=175.59  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=117.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeecc-------ccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-------DIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~  409 (495)
                      .+.+.++..++....|+...  ....+..-..|       .+.+|.+.|++++|+| ++++|++|+.|++|++||+....
T Consensus        32 ~~~~~~~n~~~~a~~w~~~g--g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~  109 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLG--STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG  109 (493)
T ss_pred             CCCcEeECCceEEEEEecCC--ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence            34456666666666776421  11111111111       2448999999999999 88999999999999999997641


Q ss_pred             cCCCCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          410 NEPADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       410 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ... ....++ ...+|...|.+++|+|+.+++|++|+.|++|+|||+.++..+..+.+|...|++++|+| +|.+|++++
T Consensus       110 ~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs  187 (493)
T PTZ00421        110 LTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTS  187 (493)
T ss_pred             ccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEec
Confidence            100 001222 33468889999999998567999999999999999999999999999999999999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|++|+|
T Consensus       188 ~Dg~IrI  194 (493)
T PTZ00421        188 KDKKLNI  194 (493)
T ss_pred             CCCEEEE
Confidence            9999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.78  E-value=1.3e-19  Score=171.01  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=147.3

Q ss_pred             HHHHHHHhhhhccCCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC
Q 048199          311 QECYLQKRRQMANQPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD  388 (495)
Q Consensus       311 ~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  388 (495)
                      ..+|+.++....+.+|...+....+..  .-.+.+|+-|..|+||++-  +....+.++.     ||+.+|++++|+++|
T Consensus       198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy--~~~~~lrtf~-----gH~k~Vrd~~~s~~g  270 (503)
T KOG0282|consen  198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY--DDRRCLRTFK-----GHRKPVRDASFNNCG  270 (503)
T ss_pred             ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEe--cCcceehhhh-----cchhhhhhhhccccC
Confidence            467888888888888887777766554  5567899999999999974  4445566665     999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199          389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE  468 (495)
Q Consensus       389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~  468 (495)
                      ..|+|+|.|+.|++||++++        .....+.....++++.|+|++.+.|++|+.|+.|+.||++++..++.+..|-
T Consensus       271 ~~fLS~sfD~~lKlwDtETG--------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL  342 (503)
T KOG0282|consen  271 TSFLSASFDRFLKLWDTETG--------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL  342 (503)
T ss_pred             Ceeeeeecceeeeeeccccc--------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence            99999999999999999998        4455566667789999999976999999999999999999999999999999


Q ss_pred             CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          469 KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.|..+.|-+ +|..++|.|+|++|+|
T Consensus       343 g~i~~i~F~~-~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  343 GAILDITFVD-EGRRFISSSDDKSVRI  368 (503)
T ss_pred             hheeeeEEcc-CCceEeeeccCccEEE
Confidence            9999999999 9999999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.78  E-value=1.2e-18  Score=163.72  Aligned_cols=151  Identities=17%  Similarity=0.336  Sum_probs=124.3

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      -.+++|++|.++.+||+..++........+ ..+.+|.+.|.+++||+ +..+|++++.|+.+.|||++++  .   ...
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~-~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~---~~~  264 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPK-TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--T---SKP  264 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccce-EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--C---CCC
Confidence            446789999999999998776631111111 12238999999999999 6779999999999999999974  1   022


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......|.+.|+|++|+|.++.+||||+.|++|.+||+|+ ..++.++.+|.+.|..|.|+|.+...|||++.|+.+.|
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            3334478899999999999999999999999999999997 46889999999999999999988889999999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.77  E-value=3.5e-19  Score=164.76  Aligned_cols=143  Identities=19%  Similarity=0.250  Sum_probs=127.0

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ...+.+++.++|++++||++......+   .+.     ||.--|+++.|||...++++||.|..|++||.+++       
T Consensus       190 pnDskF~t~SdDg~ikiWdf~~~kee~---vL~-----GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-------  254 (464)
T KOG0284|consen  190 PNDSKFLTCSDDGTIKIWDFRMPKEER---VLR-----GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-------  254 (464)
T ss_pred             CCCceeEEecCCCeEEEEeccCCchhh---eec-----cCCCCcceeccCCccceeEEccCCceeEeecCCCc-------
Confidence            356789999999999999996543322   234     89999999999999999999999999999999998       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+....-.|...|..+.|+|+ +++|+|++.|..++++|+++.+.+.++.+|++.|+++.|+|.+..+|.+|+.||.|.
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             chhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence            344444468888999999999 799999999999999999999999999999999999999999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.7e-18  Score=149.60  Aligned_cols=148  Identities=20%  Similarity=0.310  Sum_probs=127.3

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +.+..+++|+.|.++.||.-. -+.++.+..+.     ||...|.+++|+++|++|||++.|++|-||.+... .+   .
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~-~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dE---f  140 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKE-DGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DE---F  140 (312)
T ss_pred             CCCcEEEEeeccceEEEeecC-CCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-Cc---E
Confidence            456678999999999999853 36678888887     99999999999999999999999999999999854 11   1


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .+......|...|-.+.|||. ..+|+|+++|.+|++|+-..   -.+++++.+|...|++++|++ +|..|+++++|++
T Consensus       141 ec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  141 ECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT  218 (312)
T ss_pred             EEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc
Confidence            233344468888999999998 88999999999999998762   368999999999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |+|
T Consensus       219 v~I  221 (312)
T KOG0645|consen  219 VSI  221 (312)
T ss_pred             eEe
Confidence            986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.4e-18  Score=151.47  Aligned_cols=144  Identities=22%  Similarity=0.305  Sum_probs=123.7

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ....+.+++.|.+++||+..+   ...+.++.     ||...|+...|+| ..++|+++|.|+++++||++..       
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r---~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-------  180 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNR---PNSVQTFN-----GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-------  180 (311)
T ss_pred             cceeEEeeccCCceEeecCCC---CcceEeec-----CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-------
Confidence            345567779999999999853   34466655     8999999999999 7889999999999999999876       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ........|...|.++.|+..+.+.++||+.|+.|++||+++ ..++..+.+|.-.|..|.|+|....+|+|+|+|=++|
T Consensus       181 gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  181 GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            233334467789999999999899999999999999999997 4678999999999999999997778999999999988


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       261 i  261 (311)
T KOG0277|consen  261 I  261 (311)
T ss_pred             e
Confidence            6

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=5.4e-18  Score=154.91  Aligned_cols=172  Identities=15%  Similarity=0.221  Sum_probs=135.8

Q ss_pred             HhHhHHHHHHHHHhhhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEE
Q 048199          305 AQFNDLQECYLQKRRQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIE  383 (495)
Q Consensus       305 ~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  383 (495)
                      ..+-++...|-..+..   ..+...+.... .+.+..+.+.+.|.++++|++.   ..-.+.++.     +|...|..+.
T Consensus       174 ~~LWd~~~~~~c~ks~---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~---tg~cv~t~~-----~h~ewvr~v~  242 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSL---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD---TGYCVKTFP-----GHSEWVRMVR  242 (406)
T ss_pred             hhheeHHHHHHHHHHh---cCcccceeeEEEEecCCeeeecccccceeEEecc---cceeEEecc-----CchHhEEEEE
Confidence            4445555553333322   33443333333 3456778899999999999983   344566666     8999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC--------------CCCEEEEecCCCc
Q 048199          384 FDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF--------------SKNRIASSDYEGI  449 (495)
Q Consensus       384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~--------------~~~~l~sg~~dg~  449 (495)
                      .+.||.++++++.|.++++|-+.++       .+......|..+|-+++|-|.              ++.++++|+.|++
T Consensus       243 v~~DGti~As~s~dqtl~vW~~~t~-------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt  315 (406)
T KOG0295|consen  243 VNQDGTIIASCSNDQTLRVWVVATK-------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT  315 (406)
T ss_pred             ecCCeeEEEecCCCceEEEEEeccc-------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence            9999999999999999999999987       334444566777778887764              2369999999999


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++||+.+|.++.++.||..+|.+++|+| .|.||+|+.+|+++++
T Consensus       316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRV  360 (406)
T ss_pred             EEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEE
Confidence            99999999999999999999999999999 9999999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.76  E-value=1.8e-18  Score=158.80  Aligned_cols=158  Identities=19%  Similarity=0.291  Sum_probs=133.2

Q ss_pred             ccCCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 048199          322 ANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIK  401 (495)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~  401 (495)
                      .+.+|...+....+.+.+...+++.|.+++.||+..-   ..+..+.+      ...+.++.++|..++|++|+.|..|+
T Consensus       255 tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg---~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG---GLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcCCCceEeecccceEEEEEeecc---cceeeeec------CcceeEeecccccceeeecCCCCcee
Confidence            4567777888888888888999999999999998421   22333332      46688999999999999999999999


Q ss_pred             EEEccccccCCCCcCC-CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecC
Q 048199          402 VFDFASVVNEPADVHC-PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRT  479 (495)
Q Consensus       402 vwd~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~  479 (495)
                      +||.+++     +... .....+|.+.|.++.|+|.+..+|+||++|+++++||+++.. ++..+.+|.+.|.++.|+  
T Consensus       326 l~DPR~~-----~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--  398 (423)
T KOG0313|consen  326 LWDPRTG-----DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--  398 (423)
T ss_pred             ecCCCCC-----CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--
Confidence            9999987     2122 223458999999999999989999999999999999999876 999999999999999998  


Q ss_pred             CCCeEEEeeCCCcEeC
Q 048199          480 EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 ~g~~l~s~s~D~~v~l  495 (495)
                      ++..|+|||.|.+|+|
T Consensus       399 ~~~~IvSGGaD~~l~i  414 (423)
T KOG0313|consen  399 EGGLIVSGGADNKLRI  414 (423)
T ss_pred             CCceEEeccCcceEEE
Confidence            5779999999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.7e-18  Score=160.43  Aligned_cols=156  Identities=17%  Similarity=0.256  Sum_probs=118.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~  412 (495)
                      ..++..+++++.|.+..+|.+..-.+++...++.     +|..+|.-|.|+||.++|++|+.|..+++||+.++...  +
T Consensus       233 S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-----gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  233 SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-----GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             cCCCeeEeeccCCceEEEEEEecCcceeeeeeee-----cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            4567778999999999999985434444445544     99999999999999999999999999999999886110  0


Q ss_pred             CCc--C-------CC-------------ee--------------------------------------------------
Q 048199          413 ADV--H-------CP-------------VV--------------------------------------------------  420 (495)
Q Consensus       413 ~~~--~-------~~-------------~~--------------------------------------------------  420 (495)
                      ...  .       +|             ..                                                  
T Consensus       308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            000  0       00             00                                                  


Q ss_pred             ---ecCCCCCeEEEEEcC--------------------------------------------CCCCEEEEecCCCcEEEE
Q 048199          421 ---EMPTRSKLSCLSWNK--------------------------------------------FSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       421 ---~~~~~~~i~~~~~~p--------------------------------------------~~~~~l~sg~~dg~v~iw  453 (495)
                         .+....+|+++..+.                                            .+..+++||+.|+.|+||
T Consensus       388 dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW  467 (519)
T KOG0293|consen  388 DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW  467 (519)
T ss_pred             hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence               000112223332222                                            224789999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +..+|.++..+.||...|++|+|+|.++.++||||+||+|||
T Consensus       468 hr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  468 HRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             EccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence            999999999999999999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.76  E-value=3e-18  Score=156.11  Aligned_cols=143  Identities=19%  Similarity=0.254  Sum_probs=123.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +.++-+.+|+.|.+++|||+.   ......++.     ||-..|+.++|++--.|+++++.|+.|+.||+...       
T Consensus       161 P~n~wf~tgs~DrtikIwDla---tg~Lkltlt-----Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n-------  225 (460)
T KOG0285|consen  161 PGNEWFATGSADRTIKIWDLA---TGQLKLTLT-----GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN-------  225 (460)
T ss_pred             CCceeEEecCCCceeEEEEcc---cCeEEEeec-----chhheeeeeeecccCceEEEecCCCeeEEEechhh-------
Confidence            345778999999999999984   223344444     89999999999999999999999999999999986       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .......+|-+.|.+++.+|. -..|++|+.|.+++|||+++...+..+.||..+|.+|.+.|.| ..++|||.|++|++
T Consensus       226 kvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrl  303 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRL  303 (460)
T ss_pred             hhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEE
Confidence            122233478889999999999 8899999999999999999999999999999999999999955 47889999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=8.8e-18  Score=147.91  Aligned_cols=147  Identities=14%  Similarity=0.212  Sum_probs=126.5

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+++++.|+.++||....++.......+..    +|+..|++++|+|.|++|++||.|.++-||.-..+     ....
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~----~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-----efec   97 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDD----GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-----EFEC   97 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccc----cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-----ceeE
Confidence            44689999999999999875555555555554    79999999999999999999999999999987755     2223


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ....-+|...|-+++|+++ |++||+++.|.+|-||.+..+   .++..+++|+..|..+.|+| ...+|+|+|+|.+||
T Consensus        98 v~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIK  175 (312)
T ss_pred             EeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEE
Confidence            3344589999999999999 999999999999999998743   57889999999999999999 888999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      +
T Consensus       176 ~  176 (312)
T KOG0645|consen  176 V  176 (312)
T ss_pred             E
Confidence            5

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.75  E-value=6e-18  Score=155.23  Aligned_cols=144  Identities=18%  Similarity=0.311  Sum_probs=118.7

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      +.+|---+.+.+|.... +    -|.+...-+.+|+..|-+|.|+|. ..+|+|||-|++|+|||++.+.     ....+
T Consensus       227 LlsGDc~~~I~lw~~~~-g----~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-----~~~~~  296 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPST-G----SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-----KKAAV  296 (440)
T ss_pred             cccCccccceEeeeecc-C----ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----cccee
Confidence            55665556788887753 2    344444456689999999999994 5699999999999999999972     23445


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....|.+.|+-|.|+.. ..+|++|+.||+++|||+++   +.++++|.-|..+|++|.|+|.+...|+++|.|..|.|
T Consensus       297 ~~kAh~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             EeeccCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            55678999999999998 66999999999999999985   68899999999999999999977788999999988864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.2e-17  Score=165.48  Aligned_cols=145  Identities=17%  Similarity=0.228  Sum_probs=123.0

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .++++.+++|.+|+.|+||+..+   .-++.++.     .|++.|+.+.|+..|+.++++|.||+||.||+... +.+  
T Consensus       359 SpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNf--  427 (893)
T KOG0291|consen  359 SPDGQLIATGAEDGKVKVWNTQS---GFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNF--  427 (893)
T ss_pred             CCCCcEEEeccCCCcEEEEeccC---ceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-cee--
Confidence            35667889999999999999852   23466665     79999999999999999999999999999999886 111  


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                         ........-...+++..|. |.++..|+.|.. |.||++.+|+.+-.+.||+++|.+++|+| ++..|+|||+|.+|
T Consensus       428 ---RTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTV  502 (893)
T KOG0291|consen  428 ---RTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTV  502 (893)
T ss_pred             ---eeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceE
Confidence               1112223345789999999 899999999884 99999999999999999999999999999 99999999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      |+
T Consensus       503 Ri  504 (893)
T KOG0291|consen  503 RI  504 (893)
T ss_pred             EE
Confidence            86

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=5.7e-18  Score=167.43  Aligned_cols=151  Identities=16%  Similarity=0.212  Sum_probs=126.4

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ...+.+++++.|.++++|++.+.........+.. .....|...|.+++++|+..+++|||.|++.+||++...      
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------  495 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------  495 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------
Confidence            3457789999999999999865211111122211 111258999999999999999999999999999999965      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       .-.....+|..+||++.|+|. ...++|+|.|++|+||.+.+..|+++|.||+..|..+.|-. +|..|+|++.||-||
T Consensus       496 -~l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliK  572 (775)
T KOG0319|consen  496 -RLLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIK  572 (775)
T ss_pred             -eEEEEeeCCccceEEEEeccc-cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEE
Confidence             233445589999999999999 88999999999999999999999999999999999999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       573 l  573 (775)
T KOG0319|consen  573 L  573 (775)
T ss_pred             E
Confidence            5

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.73  E-value=3.3e-18  Score=153.85  Aligned_cols=151  Identities=18%  Similarity=0.323  Sum_probs=128.5

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeec---cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRH---GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~  409 (495)
                      .+.+++..+++|+-|+.+.+|++.. ++  ...++++   ..+.-|..+|.++.|+.|...+++|+.||.|+||.+.++ 
T Consensus       220 ~FSPDgqyLvsgSvDGFiEVWny~~-GK--lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG-  295 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVDGFIEVWNYTT-GK--LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG-  295 (508)
T ss_pred             eeCCCCceEeeccccceeeeehhcc-ch--hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-
Confidence            4456788899999999999999853 22  2223332   234457899999999999999999999999999999998 


Q ss_pred             cCCCCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          410 NEPADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       410 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                            .+.. ....|...|+++.|+.| +..+++++.|.+++|--+++|++++.|.||+..|+...|++ +|.+++|+|
T Consensus       296 ------~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaS  367 (508)
T KOG0275|consen  296 ------QCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISAS  367 (508)
T ss_pred             ------hHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEec
Confidence                  2221 22368889999999999 88999999999999999999999999999999999999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .||+||+
T Consensus       368 sDgtvkv  374 (508)
T KOG0275|consen  368 SDGTVKV  374 (508)
T ss_pred             CCccEEE
Confidence            9999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.72  E-value=4e-17  Score=142.12  Aligned_cols=144  Identities=17%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..+...++.|.. -.|+|+|+..+. ..++.++.     +|+..|.++.|+-+|+.++|||.||++||||++..      
T Consensus        49 Tpdk~~LAaa~~-qhvRlyD~~S~n-p~Pv~t~e-----~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------  115 (311)
T KOG0315|consen   49 TPDKKDLAAAGN-QHVRLYDLNSNN-PNPVATFE-----GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------  115 (311)
T ss_pred             cCCcchhhhccC-CeeEEEEccCCC-CCceeEEe-----ccCCceEEEEEeecCeEEEecCCCceEEEEeccCc------
Confidence            344444444433 368899986543 34777777     89999999999999999999999999999999985      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-----------------------------------
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-----------------------------------  459 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-----------------------------------  459 (495)
                        .....+.+.++|+++..||. ...|++|+.+|.|+|||+....                                   
T Consensus       116 --~~qR~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  116 --SCQRNYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             --ccchhccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence              33445567788888888888 7788888888888888875431                                   


Q ss_pred             --------------ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 --------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 --------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                                    ++..|..|++.+....++| ++++||++|.|.+|+|
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~i  241 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKI  241 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEE
Confidence                          3344567889999999999 9999999999999986

>PTZ00420 coronin; Provisional

Probab=99.72  E-value=9e-17  Score=163.84  Aligned_cols=142  Identities=15%  Similarity=0.283  Sum_probs=111.3

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCe-ee
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPV-VE  421 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~  421 (495)
                      |+.+..+.+|+..+   ...+..+.     +|.+.|.+++|+|+ +++|+|||.|++|+|||+............++ ..
T Consensus        50 GG~~gvI~L~~~~r---~~~v~~L~-----gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         50 GGLIGAIRLENQMR---KPPVIKLK-----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCceeEEEeeecCC---CceEEEEc-----CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            55566778887643   23455555     89999999999996 78999999999999999986411110001122 23


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          422 MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       422 ~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+|...|.+++|+|++..+|++|+.|++|+|||++++..+..+. |...|.+++|++ +|.+|++++.|+.|+|
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrI  193 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHI  193 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEE
Confidence            46888999999999944567899999999999999998877775 667899999999 9999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.2e-17  Score=144.19  Aligned_cols=143  Identities=20%  Similarity=0.240  Sum_probs=121.7

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+.+++.|++++|||..  ....++..++     .|...|.++.|++ .+..++++|.|++||+|+...+       ..
T Consensus        74 ~~~~~a~GDGSLrl~d~~--~~s~Pi~~~k-----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-------~S  139 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLT--MPSKPIHKFK-----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-------NS  139 (311)
T ss_pred             ceEEEEecCceEEEeccC--CCCcchhHHH-----hhhhheEEeccccccceeEEeeccCCceEeecCCCC-------cc
Confidence            445678889999999965  3344666666     7999999999998 5668889999999999999886       23


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .....+|.+-|+...|+|..+++|++++.||++++||++..-....+..|...|.+..|+..+.++|+||+-|+.||.
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence            334557888999999999999999999999999999999755555599999999999999989999999999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.71  E-value=3.6e-17  Score=150.32  Aligned_cols=156  Identities=21%  Similarity=0.232  Sum_probs=125.6

Q ss_pred             CCCccccccc-cccccCcccchhhHHhhhhhhhcc--cC--------------------ceEEEEeeccccccCCCcEEE
Q 048199          325 PHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRY--SR--------------------LRVIAELRHGDIFHSANIVSS  381 (495)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~--~~--------------------~~~~~~~~~~~~~~h~~~V~~  381 (495)
                      +|...+.... ..+++.+.+|+.|.+++||....-  +.                    -.++..+     .||+.+|.+
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-----~GHt~~Vs~  265 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-----EGHTEPVSS  265 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-----cccccceee
Confidence            4443333333 567888999999999999993211  00                    0122222     389999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---
Q 048199          382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---  458 (495)
Q Consensus       382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---  458 (495)
                      +.|++ ...++++|.|.+|+.||+.++        ...........+++++++|. ..+|++|+.|..+++||.+++   
T Consensus       266 V~w~d-~~v~yS~SwDHTIk~WDletg--------~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  266 VVWSD-ATVIYSVSWDHTIKVWDLETG--------GLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             EEEcC-CCceEeecccceEEEEEeecc--------cceeeeecCcceeEeecccc-cceeeecCCCCceeecCCCCCCCc
Confidence            99998 678889999999999999998        34444556677999999998 899999999999999999975   


Q ss_pred             cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          459 QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       459 ~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....+|.||.++|.++.|+|.+.++|+|||.|+++||
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence            3567899999999999999999999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.2e-17  Score=158.41  Aligned_cols=144  Identities=19%  Similarity=0.284  Sum_probs=125.5

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..-+..|++|+.|+++.+   .....+..+.     .|.+.|++|+.||...+++|+|.|-+||+||.+..      ..+
T Consensus        67 knWiv~GsDD~~IrVfny---nt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------wa~  132 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNY---NTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------WAC  132 (794)
T ss_pred             cceEEEecCCceEEEEec---ccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCc------eee
Confidence            345788999999999987   4455577776     89999999999999999999999999999999986      233


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC-CCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-~g~~l~s~s~D~~v~l  495 (495)
                      .....+|..-|.+++|+|.+.+.|+|++.|++|+||.+.+..+..++.||...|++|+|-+. |..+|+||++|.+|||
T Consensus       133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv  211 (794)
T KOG0276|consen  133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV  211 (794)
T ss_pred             eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence            44455788889999999998999999999999999999999999999999999999999761 2349999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.71  E-value=8.4e-18  Score=152.60  Aligned_cols=144  Identities=16%  Similarity=0.272  Sum_probs=104.7

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc--ccCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV--VNEPA  413 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~--~~~~~  413 (495)
                      .+....++|+.|++++|||...+.   .+..     +.||++.|.++.|  +.+++++||.|.+|+|||++++  .+.+.
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~~~---c~~~-----L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNSLE---CLKI-----LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ecchhhhcccccCceEEeccccHH---HHHh-----hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh
Confidence            356778899999999999975332   2222     3389999999998  5669999999999999999886  11111


Q ss_pred             CcCCC----------------------------------eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          414 DVHCP----------------------------------VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       414 ~~~~~----------------------------------~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                      .+-..                                  ....+|...|+.+.|+   ..+|+|++.|.+|++|++.+++
T Consensus       275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e  351 (499)
T KOG0281|consen  275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE  351 (499)
T ss_pred             hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecccee
Confidence            10000                                  0012566677777776   4588888888888888888888


Q ss_pred             ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 ~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++.++.||...|-++.+   +|.+++|||.|.+|+|
T Consensus       352 fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  352 FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRL  384 (499)
T ss_pred             eehhhhcccccceehhc---cCeEEEecCCCceEEE
Confidence            88888888887777776   5678888888888774

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.71  E-value=8.4e-17  Score=153.56  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=115.0

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      -+.++|++|+++.++.-.   .++...+++     .|...|.++.|+|||++|+|+|.||+|.+||=.++        ..
T Consensus       161 fRi~T~sdDn~v~ffeGP---PFKFk~s~r-----~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~  224 (603)
T KOG0318|consen  161 FRIATGSDDNTVAFFEGP---PFKFKSSFR-----EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EK  224 (603)
T ss_pred             eEEEeccCCCeEEEeeCC---Ceeeeeccc-----ccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cE
Confidence            446789999998888753   233334444     68999999999999999999999999999998887        22


Q ss_pred             ee----ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-------------------------------
Q 048199          419 VV----EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME-------------------------------  463 (495)
Q Consensus       419 ~~----~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~-------------------------------  463 (495)
                      +.    ...|.+.|.+++|+|| +..|+|.+.|.+++|||+.+..++.+                               
T Consensus       225 vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             EEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence            22    3368899999999999 99999999999999999876554333                               


Q ss_pred             ------------cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          464 ------------YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       464 ------------~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                                  +.||...|+++..++ ++.+|+|||+||.|.
T Consensus       304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~  345 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHIN  345 (603)
T ss_pred             EecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEE
Confidence                        368999999999999 999999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=7.8e-17  Score=152.65  Aligned_cols=141  Identities=23%  Similarity=0.250  Sum_probs=120.9

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +...+.+|+||..+++|++..  . ....++.     +|++.|++.+|+| ++.+++|||.||+||+||++..       
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~--a-~v~~~l~-----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-------  186 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLST--A-YVQAELS-----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-------  186 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCC--c-EEEEEec-----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-------
Confidence            456789999999999999852  2 2234454     9999999999999 5679999999999999999986       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...+..+.|..+|-.+.|-|. |.+|++++. ..|+|||+-+| +.+..+..|...|+|+++.. ++..|+|||-|+.||
T Consensus       187 ~~~v~elnhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  187 TSRVVELNHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVK  263 (487)
T ss_pred             CceeEEecCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceE
Confidence            367888899999999999999 889999874 58999999865 55566666999999999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      +
T Consensus       264 V  264 (487)
T KOG0310|consen  264 V  264 (487)
T ss_pred             E
Confidence            5

>PTZ00421 coronin; Provisional

Probab=99.70  E-value=1.6e-16  Score=161.22  Aligned_cols=156  Identities=12%  Similarity=0.140  Sum_probs=120.7

Q ss_pred             CCCccccccccc--cccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCC
Q 048199          325 PHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVS  397 (495)
Q Consensus       325 ~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d  397 (495)
                      +|...+....+.  ++..+++|+.|++|++|++.....    ..++..+.     +|...|.+++|+|++ ++|++++.|
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-----gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-----GHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-----CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            344444444443  356789999999999999853211    12334444     899999999999975 699999999


Q ss_pred             CcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEE
Q 048199          398 RRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVD  475 (495)
Q Consensus       398 ~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~  475 (495)
                      ++|+|||+.++        ..... ..|...|++++|+|+ +.+|++|+.||+|+|||++++..+..+.+|.+. +..+.
T Consensus       148 gtVrIWDl~tg--------~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~  218 (493)
T PTZ00421        148 MVVNVWDVERG--------KAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL  218 (493)
T ss_pred             CEEEEEECCCC--------eEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence            99999999986        22233 357888999999999 999999999999999999999999999999764 44678


Q ss_pred             eecCCCCeEEEee----CCCcEeC
Q 048199          476 FSRTEPSMLVSGS----DDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s----~D~~v~l  495 (495)
                      |.+ ++..|++++    .|+.|+|
T Consensus       219 w~~-~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        219 WAK-RKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             EcC-CCCeEEEEecCCCCCCeEEE
Confidence            888 666776654    4677764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.69  E-value=1.2e-16  Score=142.78  Aligned_cols=164  Identities=15%  Similarity=0.172  Sum_probs=134.4

Q ss_pred             cCCCCcccccc-ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 048199          323 NQPHTKQESDK-NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIK  401 (495)
Q Consensus       323 ~~~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~  401 (495)
                      +.++.+.+... +.++++.+++|+.|..|.+|...  ...+..+.++     +|.++|..+.|.+|++.++++|.|++|+
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~--gdceN~~~lk-----gHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY--GDCENFWVLK-----GHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecc--ccccceeeec-----cccceeEeeeeccCCCEEEEecCCceEE
Confidence            34555555443 44678899999999999999853  6667788888     9999999999999999999999999999


Q ss_pred             EEEccccccCCC--CcCCC---------------------------------eeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199          402 VFDFASVVNEPA--DVHCP---------------------------------VVEMPTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       402 vwd~~~~~~~~~--~~~~~---------------------------------~~~~~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      .||.+++....+  .+...                                 +..+.....++++.|... +..+.+|+-
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~-s~qv~sggI  194 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT-SDQVISGGI  194 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc-ccceeeccc
Confidence            999998733221  11100                                 001122345789999988 889999999


Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+.|++||++.+..+..+.||.++|+.+..++ +|.++.|-+.|.+|++
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrv  242 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRV  242 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEE
Confidence            99999999999999999999999999999999 9999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.69  E-value=1.7e-16  Score=138.16  Aligned_cols=150  Identities=14%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~  412 (495)
                      ..++.-+.+|++|++++|||+..-         .....+.|.++|.++..||+..-|++|..+|.|+|||+......  +
T Consensus        92 ~~dgrWMyTgseDgt~kIWdlR~~---------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   92 QCDGRWMYTGSEDGTVKIWDLRSL---------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             eecCeEEEecCCCceEEEEeccCc---------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            345666789999999999998531         11112257789999999998888889999999999998764110  0


Q ss_pred             ---------------------------------------CCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          413 ---------------------------------------ADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       413 ---------------------------------------~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                                                             .....|+..+ .|.+-+..+.++|| +.+|++++.|.+++|
T Consensus       163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd-~k~lat~ssdktv~i  241 (311)
T KOG0315|consen  163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD-VKYLATCSSDKTVKI  241 (311)
T ss_pred             CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC-CcEEEeecCCceEEE
Confidence                                                   0000111122 46677899999999 999999999999999


Q ss_pred             EeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++.+. ..-..+.+|..++|..+|+. ||.||+|||.|+.+|+
T Consensus       242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rl  284 (311)
T KOG0315|consen  242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARL  284 (311)
T ss_pred             EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceee
Confidence            999876 55577899999999999999 9999999999999875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.2e-16  Score=148.06  Aligned_cols=94  Identities=17%  Similarity=0.351  Sum_probs=75.5

Q ss_pred             cCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      +|...|++++|+|..+ ++..++.+.+|+|.|+++.        ..+..+.....+|+++|.-+..++|+.|..+|.|.|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence            6788999999999777 7889999999999999996        555555556889999999998999999999999999


Q ss_pred             EeCCCCc-ceeeccc--ccCcEEEEE
Q 048199          453 WDVTTQQ-SVMEYEE--HEKRAWSVD  475 (495)
Q Consensus       453 wd~~~~~-~~~~~~~--h~~~v~~v~  475 (495)
                      ||++..+ .+..+.+  ...+|..++
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~  288 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIA  288 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeec
Confidence            9998643 3444443  234555444

>PTZ00420 coronin; Provisional

Probab=99.69  E-value=3e-16  Score=160.03  Aligned_cols=157  Identities=14%  Similarity=0.172  Sum_probs=119.1

Q ss_pred             CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCc-----eEEEEeeccccccCCCcEEEEEEccCCCE-EEEEe
Q 048199          324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRL-----RVIAELRHGDIFHSANIVSSIEFDRDDQL-FATAG  395 (495)
Q Consensus       324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s  395 (495)
                      .+|...+.+..+..  +..+++|+.|++++||++......     .++..+.     +|...|.+++|+|++.. |++++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-----gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-----GHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-----cCCCcEEEEEECCCCCeEEEEEe
Confidence            34444444444432  467899999999999998532210     1222333     89999999999998875 57999


Q ss_pred             CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEE--
Q 048199          396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWS--  473 (495)
Q Consensus       396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~--  473 (495)
                      .|++|+|||+.++        .....+.+...|.+++|+|+ |.+|++++.|+.|+|||++++..+.++.+|.+.+.+  
T Consensus       146 ~DgtIrIWDl~tg--------~~~~~i~~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~  216 (568)
T PTZ00420        146 FDSFVNIWDIENE--------KRAFQINMPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN  216 (568)
T ss_pred             CCCeEEEEECCCC--------cEEEEEecCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence            9999999999986        23334456678999999999 999999999999999999999999999999875433  


Q ss_pred             ---EEeecCCCCeEEEeeCCC----cEeC
Q 048199          474 ---VDFSRTEPSMLVSGSDDC----KVLY  495 (495)
Q Consensus       474 ---v~~~~~~g~~l~s~s~D~----~v~l  495 (495)
                         ..|++ ++.+|+|++.|+    .|+|
T Consensus       217 v~~~~fs~-d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        217 IWIDGLGG-DDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             EEeeeEcC-CCCEEEEEEcCCCCccEEEE
Confidence               34557 888899888774    5654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=4e-17  Score=162.26  Aligned_cols=144  Identities=11%  Similarity=0.197  Sum_probs=121.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+++.+.-+.+.+|++.++.+...+..+.     .|.-.|..+.||+ ..++|++||.||+||+||++..       ..
T Consensus       101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-----EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------~S  168 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKSIRNKLLTVFN-----EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------KS  168 (839)
T ss_pred             hhheeecCCCcEEEEecCccccchhhhHhh-----hhccceeeeeeccCCccEEEecCCCceEEEEeeecc-------cc
Confidence            344555555688999997765544444444     7999999999998 5679999999999999999987       33


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....++....|..|.|+|..+++|+++...|.+++||++. .++...|.+|.++|.++.|+| ++.+|||||.|++|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vki  246 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKI  246 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEE
Confidence            3444556678999999999899999999999999999986 578889999999999999999 9999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.3e-16  Score=145.84  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=122.7

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC----------C-----CEEEEEeCCCcE
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD----------D-----QLFATAGVSRRI  400 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~----------~-----~~l~s~s~d~~i  400 (495)
                      .++..+++++.|.++.+|-+...   .....++     .|..+|.+++|-|.          +     +++++++.|++|
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~---~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATK---QCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccc---hhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            45677889999999999987421   1223333     78889999998763          2     489999999999


Q ss_pred             EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199          401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE  480 (495)
Q Consensus       401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  480 (495)
                      |+||+.++       .+.....+|...|..++|+|. |.||+|...|+++++||++++++..++..|+.-|++++|+. +
T Consensus       317 k~wdv~tg-------~cL~tL~ghdnwVr~~af~p~-Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~  387 (406)
T KOG0295|consen  317 KIWDVSTG-------MCLFTLVGHDNWVRGVAFSPG-GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-T  387 (406)
T ss_pred             EEEeccCC-------eEEEEEecccceeeeeEEcCC-CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-C
Confidence            99999998       556666789999999999999 99999999999999999999999999999999999999998 7


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      -.+++|||-|.++++
T Consensus       388 ~p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  388 APYVVTGSVDQTVKV  402 (406)
T ss_pred             CceEEeccccceeee
Confidence            779999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.67  E-value=4.2e-16  Score=135.79  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~  412 (495)
                      ..+...+.+|+.+..++|+++.+-.  .+..     ++.+|.+.|+.+.|....+.|++++.|++||+||.+++...  +
T Consensus       109 ~~ds~~lltgg~ekllrvfdln~p~--App~-----E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL  181 (334)
T KOG0278|consen  109 SQDSNYLLTGGQEKLLRVFDLNRPK--APPK-----EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL  181 (334)
T ss_pred             cccchhhhccchHHHhhhhhccCCC--CCch-----hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence            3456678999999999999986322  2233     33499999999999998899999999999999999987211  0


Q ss_pred             CC----------cCCCee--------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee
Q 048199          413 AD----------VHCPVV--------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM  462 (495)
Q Consensus       413 ~~----------~~~~~~--------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~  462 (495)
                      ..          ......                    .+.....|.+...+|+ ..++++|+.|+.++.||..+|..+.
T Consensus       182 ~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  182 EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceEEecCcceEEEEEeccCCceee
Confidence            00          000000                    1112234677889999 7899999999999999999999999


Q ss_pred             ec-ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          463 EY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       463 ~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+ .+|-++|.+|.|+| +|...++||.||+|+|
T Consensus       261 ~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirl  293 (334)
T KOG0278|consen  261 SYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRL  293 (334)
T ss_pred             ecccCCCCceEEEEECC-CCceeeccCCCceEEE
Confidence            87 89999999999999 9999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.67  E-value=1.1e-17  Score=151.94  Aligned_cols=108  Identities=21%  Similarity=0.390  Sum_probs=96.1

Q ss_pred             ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          373 FHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       373 ~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .||...|..+.|  +.++++++|.|.+|++|++.+.       ...-..-+|..+|-|+.+.   +.+++||+.|.+|++
T Consensus       317 vGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~-------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  317 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTC-------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRL  384 (499)
T ss_pred             hhhhhheeeecc--ccceEEEecCCceEEEEeccce-------eeehhhhcccccceehhcc---CeEEEecCCCceEEE
Confidence            489999999999  5669999999999999999997       3333344688889899887   789999999999999


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||+..|.++..++||+.-|.++.|.   ...++||++||+|||
T Consensus       385 wdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  385 WDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKV  424 (499)
T ss_pred             EeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEE
Confidence            9999999999999999999999994   489999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.67  E-value=3e-16  Score=148.50  Aligned_cols=182  Identities=16%  Similarity=0.208  Sum_probs=135.4

Q ss_pred             HHHHHhhhhccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcc------------------------------cCc
Q 048199          313 CYLQKRRQMANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRY------------------------------SRL  361 (495)
Q Consensus       313 ~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~------------------------------~~~  361 (495)
                      .|-+.++..++.+|...+.+..+ ..+..+.+++.|+.+++||...-                              ++.
T Consensus       244 vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  244 VYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             EecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCc
Confidence            34445555566666655555444 46788899999999999996311                              222


Q ss_pred             eEEEEeeccccc----cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-----CCCcCCCee------------
Q 048199          362 RVIAELRHGDIF----HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-----PADVHCPVV------------  420 (495)
Q Consensus       362 ~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-----~~~~~~~~~------------  420 (495)
                      ...|+++.+++.    .|.+.|.+|.|-++|..|++++.|++++||+.+.+...     ...+..|..            
T Consensus       324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ  403 (503)
T ss_pred             EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence            345666666554    48899999999999999999999999999998775110     000011100            


Q ss_pred             -------ec---------------CCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEe
Q 048199          421 -------EM---------------PTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF  476 (495)
Q Consensus       421 -------~~---------------~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  476 (495)
                             .+               +|.  +--..+.|+|| |.+|++|+.||.+.+||.++...+..+.+|.++|..+.|
T Consensus       404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence                   00               111  22457899999 999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEeeCCCcEeC
Q 048199          477 SRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       477 ~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|.....+||+++||.|++
T Consensus       483 HP~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  483 HPVEPSKVATCGWDGLIKI  501 (503)
T ss_pred             cCCCcceeEecccCceeEe
Confidence            9988899999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.2e-16  Score=160.84  Aligned_cols=138  Identities=16%  Similarity=0.256  Sum_probs=119.4

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      ..++...+.+.+||+. ...  .+.     .|..|.++|+++.|||++.+|+|||.|.+|+||++...       ++...
T Consensus        24 ILtslHsG~IQlWDYR-M~t--li~-----rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------rclft   88 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYR-MGT--LID-----RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFT   88 (1202)
T ss_pred             EEEeecCceeeeehhh-hhh--HHh-----hhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-------eehhh
Confidence            3444445589999984 111  111     23379999999999999999999999999999999987       45556


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       421 ~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+|-+-|..+.||+. ...|+|+|.|-+|+||+..++.++..+.||...|.|..|+| ....++|+|-|.+|||
T Consensus        89 L~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRV  161 (1202)
T ss_pred             hccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEE
Confidence            6789999999999999 88999999999999999999999999999999999999999 8889999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.66  E-value=1.6e-16  Score=139.35  Aligned_cols=155  Identities=20%  Similarity=0.236  Sum_probs=122.7

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .+..++..+++|+.|.++.+|.+.+. ++..-..     ..+|++.|-.+.|+| +..+|++++.|++|++||++.++..
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~-----~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERD-RFRKELV-----YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecch-hhhhhhc-----ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            44568899999999999999998542 2222222     238999999999998 6779999999999999998864210


Q ss_pred             CC---------------C-----------------------------------------------------------cCC
Q 048199          412 PA---------------D-----------------------------------------------------------VHC  417 (495)
Q Consensus       412 ~~---------------~-----------------------------------------------------------~~~  417 (495)
                      ..               +                                                           ...
T Consensus       101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence            00               0                                                           000


Q ss_pred             Ceeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+..+ .|.....||.|+|+ |.+||+|+.|..+.+||+...-|++.|..+.-+|..+.|+. ||.+|||||.|..|-|
T Consensus       181 pv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  181 PVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDI  257 (313)
T ss_pred             cccccccCCcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEe
Confidence            11111 45566789999999 99999999999999999999999999999999999999999 9999999999988754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3e-16  Score=158.03  Aligned_cols=146  Identities=18%  Similarity=0.307  Sum_probs=124.1

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .++.....+++|++|..+++|.+.   .-+.+.++.     ||.+.|+.+.||+.-..++|+|.|.|||||++.+.    
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk---~rrclftL~-----GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----  125 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYK---TRRCLFTLL-----GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----  125 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecc---cceehhhhc-----cccceeEEeeccCCCceEEEccCCCeEEEEeccCC----
Confidence            344566789999999999999873   445666666     99999999999999999999999999999999997    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-----------------------------ceee
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-----------------------------SVME  463 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-----------------------------~~~~  463 (495)
                         .+.....+|..-|.|..|||. ..+++|+|.|-+|+|||+.-.+                             .-..
T Consensus       126 ---~~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  126 ---KCIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             ---ceEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence               455566689999999999998 8899999999999999984210                             1134


Q ss_pred             cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          464 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       464 ~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.||...|+.++|+| .-.+|+||++|+.||+
T Consensus       202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccccccceEEecC-CcceEEecCCcceeeE
Confidence            578999999999999 7779999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.66  E-value=5e-16  Score=146.50  Aligned_cols=153  Identities=14%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             CCCccccc-cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC---------CEEEEE
Q 048199          325 PHTKQESD-KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD---------QLFATA  394 (495)
Q Consensus       325 ~~~~~~~~-~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~---------~~l~s~  394 (495)
                      +|...++. .+.+.+..+++.++|.+++||...+-   .....+.     .|+..|+.+.|+|+|         ..++++
T Consensus       357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sa  428 (524)
T KOG0273|consen  357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASA  428 (524)
T ss_pred             cccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEe
Confidence            34444443 33456788999999999999987432   2233333     899999999999964         379999


Q ss_pred             eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEE
Q 048199          395 GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV  474 (495)
Q Consensus       395 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v  474 (495)
                      +.|.+|++||+..+       ......+.|..+|++++|+|+ +.++++|+.||.|.||++++++.++.+.+ .+.|..|
T Consensus       429 s~dstV~lwdv~~g-------v~i~~f~kH~~pVysvafS~~-g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel  499 (524)
T KOG0273|consen  429 SFDSTVKLWDVESG-------VPIHTLMKHQEPVYSVAFSPN-GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFEL  499 (524)
T ss_pred             ecCCeEEEEEccCC-------ceeEeeccCCCceEEEEecCC-CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEE
Confidence            99999999999998       233334589999999999999 99999999999999999999999999986 4569999


Q ss_pred             EeecCCCCeEEEeeCCCcEeC
Q 048199          475 DFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       475 ~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|+. +|..|..+-.|+.|++
T Consensus       500 ~Wn~-~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  500 CWNA-AGDKLGACASDGSVCV  519 (524)
T ss_pred             EEcC-CCCEEEEEecCCCceE
Confidence            9999 8898888888887763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=3.4e-16  Score=157.70  Aligned_cols=119  Identities=22%  Similarity=0.325  Sum_probs=100.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc------c----------------------c--------CCC----
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV------V----------------------N--------EPA----  413 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~------~----------------------~--------~~~----  413 (495)
                      .|.+.|+++.|++||+|||+||.|+.|+||.+...      .                      .        ...    
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            69999999999999999999999999999998760      0                      0        000    


Q ss_pred             ------------CcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199          414 ------------DVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE  480 (495)
Q Consensus       414 ------------~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  480 (495)
                                  -...|+. ..+|.+.|..+.|+.+  ++|+|++.|.||++|++....|+..|. |.+-|+||+|+|.|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence                        0001111 2378888999999975  599999999999999999999999997 99999999999999


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      .+|++|||-||+|||
T Consensus       422 DryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRL  436 (712)
T ss_pred             CCcEeecccccceEE
Confidence            999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.66  E-value=1.8e-16  Score=142.10  Aligned_cols=155  Identities=15%  Similarity=0.230  Sum_probs=122.5

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeecc----------ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHG----------DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~----------~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      ...+++.+++|+.|-+++|.+..+.-.......+..|          .+..|...|.++.|||....|++|+.|++|++|
T Consensus       120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF  199 (430)
T KOG0640|consen  120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF  199 (430)
T ss_pred             eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence            3467788899999999999998644211111111111          344799999999999999999999999999999


Q ss_pred             EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---ccccCcEEEEEeecCC
Q 048199          404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTE  480 (495)
Q Consensus       404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~~  480 (495)
                      |+...     ..+.....+....+|.++.|||. |.+|+.|..-.++++||+++-++...-   .+|++.|++|.+++ +
T Consensus       200 DfsK~-----saKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t  272 (430)
T KOG0640|consen  200 DFSKT-----SAKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-T  272 (430)
T ss_pred             ecccH-----HHHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-C
Confidence            99875     11112222344557999999999 999999999999999999998876554   46899999999999 9


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      |.+.++||.||.|||
T Consensus       273 ~~lYvTaSkDG~Ikl  287 (430)
T KOG0640|consen  273 GSLYVTASKDGAIKL  287 (430)
T ss_pred             ccEEEEeccCCcEEe
Confidence            999999999999986

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.65  E-value=7.5e-16  Score=144.96  Aligned_cols=160  Identities=13%  Similarity=0.212  Sum_probs=124.9

Q ss_pred             CCCCccccccccc--cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcE
Q 048199          324 QPHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRI  400 (495)
Q Consensus       324 ~~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i  400 (495)
                      ..+...+++..+.  ....+.+.++|..+.|||... ....+.....     +|.+.|.+++|+| ++.+|||||.|++|
T Consensus       224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~-~~~~~~~~~~-----ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS-NTSKPSHSVK-----AHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             ecCCcceehhhccccchhhheeecCCCeEEEEEcCC-CCCCCccccc-----ccCCceeEEEeCCCCCceEEeccCCCcE
Confidence            3444444444432  456678888999999999864 2333333344     8999999999999 67789999999999


Q ss_pred             EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Cc-------------ceeeccc
Q 048199          401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQ-------------SVMEYEE  466 (495)
Q Consensus       401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~-------------~~~~~~~  466 (495)
                      ++||+++..      ..+....+|...|.+|.|+|....+|+|++.|+.+.|||+.. |.             .+..-.|
T Consensus       298 ~LwDlRnL~------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG  371 (422)
T KOG0264|consen  298 ALWDLRNLN------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG  371 (422)
T ss_pred             EEeechhcc------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence            999999872      133444578899999999999999999999999999999864 21             2345568


Q ss_pred             ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+..|..+.|+|..+-.|+|.+.|+.+.|
T Consensus       372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  372 HTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             cccccccccCCCCCCeEEEEecCCceEEE
Confidence            99999999999977778999999987754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.65  E-value=5.4e-15  Score=137.47  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             hhhhccCCCCccccccccccc-cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC
Q 048199          318 RRQMANQPHTKQESDKNIIHR-EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV  396 (495)
Q Consensus       318 r~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~  396 (495)
                      +.......+.+..+...+..+ ..+.+|+.|..|++|+... .+...+.++.     |..+.|+++.|++++.++++++.
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~-~k~~~~~tLa-----Gs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLG-EKSELISTLA-----GSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhccc-chhhhhhhhh-----ccCCCcceeeecCCCceEEeecC
Confidence            333344556666777777665 8899999999999999742 2223333333     67889999999999999999999


Q ss_pred             CCcEEEEEcccc
Q 048199          397 SRRIKVFDFASV  408 (495)
Q Consensus       397 d~~i~vwd~~~~  408 (495)
                      |+.+++|+++..
T Consensus       240 d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  240 DKNLRLWNVDSL  251 (459)
T ss_pred             CCceeeeeccch
Confidence            999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.8e-15  Score=130.78  Aligned_cols=154  Identities=16%  Similarity=0.239  Sum_probs=126.1

Q ss_pred             ccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199          322 ANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI  400 (495)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i  400 (495)
                      .|.++...+.+.. ..+++.+.+++.|..+.+||+.   ..+.+..++     +|.+.|..+.|+.+...+++||.|.++
T Consensus        54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~---TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~  125 (307)
T KOG0316|consen   54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN---TGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSV  125 (307)
T ss_pred             eecCCCceeeeccccccccccccCCCCceEEEEEcc---cCeeeeecc-----cccceeeEEEecCcceEEEecccccee
Confidence            3455555555544 3467889999999999999983   344555555     899999999999999999999999999


Q ss_pred             EEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC
Q 048199          401 KVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT  479 (495)
Q Consensus       401 ~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  479 (495)
                      ++||.++.-      ..|+..+ .....|.++..+   +..|++|+.||+++.||++.|+....+-+|  +|++++|++ 
T Consensus       126 r~wDCRS~s------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-  193 (307)
T KOG0316|consen  126 RLWDCRSRS------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-  193 (307)
T ss_pred             EEEEcccCC------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-
Confidence            999999861      2344433 355679999998   779999999999999999999988877766  799999999 


Q ss_pred             CCCeEEEeeCCCcEeC
Q 048199          480 EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 ~g~~l~s~s~D~~v~l  495 (495)
                      +++..+.++.|+++++
T Consensus       194 d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRL  209 (307)
T ss_pred             CCCEEEEeeccceeee
Confidence            9999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=3.8e-16  Score=144.24  Aligned_cols=122  Identities=18%  Similarity=0.318  Sum_probs=105.8

Q ss_pred             cccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          372 IFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      +.||++.|.+++|+| +.+.+||||.|.+|+||++..+.-........+...+|..+|.-+.|||.-.+.|+|++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            348999999999999 6779999999999999999776222111122344558889999999999988999999999999


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|||+.+|+.+-++. |.+-|++++|+. ||.+|+|++.|..|||
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv  199 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRV  199 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEE
Confidence            999999999999988 999999999999 9999999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.64  E-value=1.8e-15  Score=135.27  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=103.3

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ||.+.|+.+.|+|+|.+|+|||.|..|.+|++....      .......+|.+.|..+.|.+| ++.|+|++.|.+|+.|
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGW  117 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccC-CCEEEEecCCceEEEE
Confidence            899999999999999999999999999999976641      123334489999999999999 9999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+++|+.+..+.+|.+-|++++-+..+..++.||++|+++||
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl  159 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKL  159 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEE
Confidence            999999999999999999999876656788999999999985

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=5e-16  Score=151.78  Aligned_cols=151  Identities=16%  Similarity=0.243  Sum_probs=123.6

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEE-ccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEF-DRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .+..+.+.+.|++|++|+...-. .....+++     .|.+.|.++++ -++..++||||.|+.|.+||+.++...+...
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir-----~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s  157 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDN-TFCMSTIR-----THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS  157 (735)
T ss_pred             CCCceEEecCCceEEEeecccCc-chhHhhhh-----cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence            34578999999999999985432 12233333     79999999999 7889999999999999999999873211110


Q ss_pred             CC--Cee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          416 HC--PVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       416 ~~--~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ..  ++.  ..++...|++++-++. +..|++|+..+.+++||-+++..+..+.||++.|..+-.+. ||..++|+|.||
T Consensus       158 ~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDg  235 (735)
T KOG0308|consen  158 FNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDG  235 (735)
T ss_pred             ccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCc
Confidence            00  111  1157778999999999 89999999999999999999999999999999999999999 999999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      +|+|
T Consensus       236 tIrl  239 (735)
T KOG0308|consen  236 TIRL  239 (735)
T ss_pred             eEEe
Confidence            9986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.4e-15  Score=153.21  Aligned_cols=154  Identities=15%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             CCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEE
Q 048199          324 QPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKV  402 (495)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~v  402 (495)
                      .+|...+.+..+.....+.+.+-|.+|+||++.+   ...+..+      .|.+.|+||+|+| |.+||++|+.|++|||
T Consensus       366 ~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~---~~CL~~F------~HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  366 KGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGR---KECLKVF------SHNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             hccchhheecccccCCeeEeccccccEEeecCCC---cceeeEE------ecCCeeEEEEecccCCCcEeecccccceEE
Confidence            4566777778888888899999999999999953   2344444      5899999999999 8899999999999999


Q ss_pred             EEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--c------cCcEEEE
Q 048199          403 FDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--H------EKRAWSV  474 (495)
Q Consensus       403 wd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h------~~~v~~v  474 (495)
                      |++...        ..+.......-|++++|.|| |.+.+.|+.+|.+++|++...+....+.-  |      ...|+++
T Consensus       437 WsI~d~--------~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~  507 (712)
T KOG0283|consen  437 WSISDK--------KVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL  507 (712)
T ss_pred             eecCcC--------eeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence            999875        44444555678999999999 99999999999999999987665544421  1      2289999


Q ss_pred             EeecCCCCeEEEeeCCCcEeC
Q 048199          475 DFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       475 ~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|.|.+...++..|.|..|||
T Consensus       508 Q~~p~~~~~vLVTSnDSrIRI  528 (712)
T KOG0283|consen  508 QFFPGDPDEVLVTSNDSRIRI  528 (712)
T ss_pred             EecCCCCCeEEEecCCCceEE
Confidence            999877777888889999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.63  E-value=2.2e-16  Score=142.20  Aligned_cols=119  Identities=23%  Similarity=0.362  Sum_probs=102.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +..+.+.+..|+|||++|++|+.||-|.+||+.+++  ++++ .......+-+...|.|++|+.| ...+++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-YQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-YQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-hhhhcceeecccceEEEeeccc-HHHhhccCcCCcEE
Confidence            456778899999999999999999999999999871  1111 1122334457788999999999 88999999999999


Q ss_pred             EEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||.+.+|.|+..|. .|+..|+++.|+. |+..+.|+|.|.+|||
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI  332 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence            99999999999998 8999999999999 9999999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.7e-15  Score=150.38  Aligned_cols=151  Identities=16%  Similarity=0.265  Sum_probs=124.7

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCc--------------------------------eEEEEeeccccc----cCCCcE
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRL--------------------------------RVIAELRHGDIF----HSANIV  379 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~--------------------------------~~~~~~~~~~~~----~h~~~V  379 (495)
                      ..+..+.+.+-|++|+.||+.+|..+                                ..+|.+++|.++    ||.++|
T Consensus       402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV  481 (893)
T KOG0291|consen  402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV  481 (893)
T ss_pred             ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence            44556677888899999999888332                                245777887654    899999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                      .+++|+|+++.|+++|.|+|||+||+-..       ...+..+.+.+.+..++|+|+ |.-|+.+..||.|.+||+..+.
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s-------~~~vEtl~i~sdvl~vsfrPd-G~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSS-------SGTVETLEIRSDVLAVSFRPD-GKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeecc-------CceeeeEeeccceeEEEEcCC-CCeEEEEEecceEEEEEhhhce
Confidence            99999999999999999999999999765       345666677788999999999 9999999999999999998766


Q ss_pred             ceeeccc--------------------ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 SVMEYEE--------------------HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 ~~~~~~~--------------------h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+.++.|                    .....+.+++++ ||..|++|+....|+|
T Consensus       554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICI  608 (893)
T ss_pred             eeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEE
Confidence            5544432                    235789999999 9999999999888764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.63  E-value=4.2e-16  Score=148.41  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             cCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ||...+++.+|||. .+.|+|++.|+++||||+...+..+.... +...-+..-.+..++|++| +..||+|+.||+|++
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik-~k~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK-TKPAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQI  343 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe-eccCCCcccCceeeecCCC-cchhhhcccCCceee
Confidence            79999999999994 56899999999999999998733221111 1111123346899999999 889999999999999


Q ss_pred             EeCCCCc---ceeecccccC--cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTTQQ---SVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~---~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||..+..   ....-.+|..  .|++|.|++ +|++|+|-|.|+++||
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKV  390 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceee
Confidence            9976432   2233356866  899999999 9999999999999885

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.63  E-value=1.2e-15  Score=139.33  Aligned_cols=113  Identities=20%  Similarity=0.327  Sum_probs=104.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|.+.|+++++.|.+++|+||+.|++|+|||+.++       .......+|-..+..+++++. ..|+++++.|+.|+.|
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------eEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEE
Confidence            89999999999999999999999999999999998       334445578889999999998 7899999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+...+.+..+.||-..|++++.+| .-..|+||+.|.++||
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~Rv  261 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRV  261 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEE
Confidence            9999999999999999999999999 7789999999999885

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.62  E-value=1.8e-15  Score=141.85  Aligned_cols=143  Identities=17%  Similarity=0.244  Sum_probs=124.0

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ...+++|+.|.+|++||+   +...+...+.     +|.+.|.++.|+| ...+|++||.|++|+++|.+..       .
T Consensus       256 ~nVLaSgsaD~TV~lWD~---~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-------~  320 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDV---DTGKPKSSIT-----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-------S  320 (463)
T ss_pred             ceeEEecCCCceEEEEEc---CCCCcceehh-----hcCCceeEEEecCCCceEEEeccccceEEeeeccCc-------c
Confidence            456889999999999999   4455566666     7899999999999 6779999999999999999964       2


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..-..+...+.|-.++|+|.+...++++..||+|+-+|+|+ +.++.++..|.+.|.+++++...+++|+|+|.|+.|++
T Consensus       321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence            33344456678999999999889999999999999999997 58999999999999999999878899999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.62  E-value=4.3e-15  Score=162.02  Aligned_cols=140  Identities=18%  Similarity=0.265  Sum_probs=116.1

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ...+++|+.|+++++|++..   ...+..+.     +|.+.|++++|+| ++.+|++|+.|++|++||+.++        
T Consensus       545 ~~~las~~~Dg~v~lWd~~~---~~~~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--------  608 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVAR---SQLVTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--------  608 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCC---CeEEEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--------
Confidence            34577888899999999843   23344444     8999999999997 7899999999999999999876        


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+..+.+...+.++.|++.++.+|++|+.||.|++||++++. .+..+.+|...|+++.|.  ++.+|+|+|.|++|+|
T Consensus       609 ~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~iki  686 (793)
T PLN00181        609 VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKL  686 (793)
T ss_pred             cEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEE
Confidence            2333444556799999976558999999999999999998765 577888999999999996  5789999999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.4e-16  Score=154.66  Aligned_cols=140  Identities=19%  Similarity=0.293  Sum_probs=123.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+.+|+.|..+.||.+...   ..+..+.     +|.++|.+|.|++...+|++|+.+|+||+||+...       +..
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp---~~i~S~~-----~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-------k~v  105 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKP---NAITSLT-----GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-------KIV  105 (825)
T ss_pred             eeeccCCCceeeccccccCC---chhheee-----ccCCcceeeecCcchhhhcccccCCceeeeehhhh-------hhh
Confidence            45678999999999998543   3333333     89999999999999999999999999999999987       233


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ...++|...+.++.|||. +.++++|+.|+.+++||++...|...+.+|...|..+.|+| +|.++++|++|.+|+|
T Consensus       106 rtLtgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki  180 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPY-GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKI  180 (825)
T ss_pred             hhhhccccCcceeeeccc-eEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeee
Confidence            355688889999999999 89999999999999999999999999999999999999999 9999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.62  E-value=7.3e-16  Score=138.21  Aligned_cols=151  Identities=15%  Similarity=0.230  Sum_probs=121.8

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .+.+....+.+|+.|++++++|+.+..-.+...      .+.-..+|++|+|||.|.+|+.|....++++||+.+.....
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFK------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHH------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence            445566778999999999999996432222111      22346789999999999999999999999999999861111


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-ccc-CcEEEEEeecCCCCeEEEeeCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHE-KRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~-~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                          ...-..+|.+.|+++.+++. +.+.++|+.||.|+|||--+++|+.+|. .|. ..|.+..|.. ||.+++|.+.|
T Consensus       253 ----sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~D  326 (430)
T KOG0640|consen  253 ----SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKD  326 (430)
T ss_pred             ----ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCc
Confidence                11123468889999999999 9999999999999999998999999986 464 4789999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      ..||+
T Consensus       327 S~vkL  331 (430)
T KOG0640|consen  327 STVKL  331 (430)
T ss_pred             ceeee
Confidence            99985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=4.5e-15  Score=128.38  Aligned_cols=113  Identities=20%  Similarity=0.264  Sum_probs=102.4

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|.++|+.+.|+-+|+|.+++|.|++||+|+...+       .......+|...|..++.+.| ...|++|+.|..|.+|
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVW   86 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeecccccc-ccccccCCCCceEEEE
Confidence            68899999999999999999999999999999887       222233467778999999988 8899999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+.+|+.+..|.+|...|+.|.|+. +...++|||.|.+|++
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~  127 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRL  127 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEE
Confidence            9999999999999999999999999 8999999999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=3.9e-15  Score=147.78  Aligned_cols=155  Identities=15%  Similarity=0.208  Sum_probs=131.6

Q ss_pred             cccccccccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 048199          331 SDKNIIHREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA  406 (495)
Q Consensus       331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~  406 (495)
                      .....+++.++++|+.|.+|++|++.-...    ...+..+.+...+.-...|.+++++|||.+|+.+-.|.+|+||-++
T Consensus       459 si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD  538 (888)
T KOG0306|consen  459 SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD  538 (888)
T ss_pred             eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence            334557788999999999999999842211    1122333332333346789999999999999999999999999999


Q ss_pred             ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          407 SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      +.       +..+..++|.=+|.|++++|| +..++||+.|..|+||-+.-|.|-++|.+|.+.|.+|.|-| ....+.|
T Consensus       539 tl-------KFflsLYGHkLPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt  609 (888)
T KOG0306|consen  539 TL-------KFFLSLYGHKLPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFT  609 (888)
T ss_pred             ce-------eeeeeecccccceeEEeccCC-cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEE
Confidence            87       566777899999999999999 99999999999999999999999999999999999999999 8899999


Q ss_pred             eeCCCcEe
Q 048199          487 GSDDCKVL  494 (495)
Q Consensus       487 ~s~D~~v~  494 (495)
                      +|.|+.||
T Consensus       610 ~gKD~kvK  617 (888)
T KOG0306|consen  610 CGKDGKVK  617 (888)
T ss_pred             ecCcceEE
Confidence            99999987

>smart00504 Ubox Modified RING finger domain

Probab=99.61  E-value=3.5e-16  Score=112.76  Aligned_cols=62  Identities=26%  Similarity=0.565  Sum_probs=57.7

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHH
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKK  113 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~  113 (495)
                      ++.||||++.+++|++++|||+||+.||.+|+.....||.|+++++.+++.+|..+.+.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            47899999999999999999999999999999988899999999999999999998887763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.60  E-value=3e-15  Score=154.75  Aligned_cols=159  Identities=13%  Similarity=0.125  Sum_probs=125.9

Q ss_pred             cccccCcccch--hhHHhhhhhhhcccCceEEEEe--ec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-
Q 048199          335 IIHREGYNAGL--ADFQSVLTTFTRYSRLRVIAEL--RH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-  407 (495)
Q Consensus       335 ~~~~~~~~~g~--~d~~~~lw~~~~~~~~~~~~~~--~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-  407 (495)
                      ..++..+++|+  .|..+.||......+.......  ..  ..+..|.+.|.|+.|+|||.+||+||.|+.|.||.... 
T Consensus        22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~  101 (942)
T KOG0973|consen   22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI  101 (942)
T ss_pred             cCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc
Confidence            45677888888  7888889986543221111111  10  12227999999999999999999999999999999884 


Q ss_pred             c----------ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEee
Q 048199          408 V----------VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS  477 (495)
Q Consensus       408 ~----------~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~  477 (495)
                      +          .......+......+|.+.|..++|+|+ +.+|++++.|++|.|||.++...+..+.+|.+.|.++.|.
T Consensus       102 ~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D  180 (942)
T KOG0973|consen  102 GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD  180 (942)
T ss_pred             CCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccceeeeeeecccccccceEEC
Confidence            1          1111112223344579999999999998 9999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEeeCCCcEeC
Q 048199          478 RTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       478 ~~~g~~l~s~s~D~~v~l  495 (495)
                      | -|.||||-++|++|+|
T Consensus       181 P-~Gky~ASqsdDrtikv  197 (942)
T KOG0973|consen  181 P-IGKYFASQSDDRTLKV  197 (942)
T ss_pred             C-ccCeeeeecCCceEEE
Confidence            9 9999999999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.59  E-value=7.8e-15  Score=149.22  Aligned_cols=135  Identities=21%  Similarity=0.319  Sum_probs=117.5

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+.+|+.|.++++||.   ........+.     +|.+.|+++..  .+.++++||.|.+|++|++.++        .
T Consensus       261 ~~~lvsgS~D~t~rvWd~---~sg~C~~~l~-----gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~--------~  322 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDC---STGECTHSLQ-----GHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG--------A  322 (537)
T ss_pred             CCEEEEEecCCcEEeEec---CCCcEEEEec-----CCCceEEEEEc--cCceEeeccCCceEEEEeccCc--------c
Confidence            566889999999999996   4456677776     89999999988  4557888999999999999987        4


Q ss_pred             CeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+..+. |.+.|+++..+   +.++++|++||+|+|||+.+++++.++.+|..+|+++.+.. . .++++||.|++|++
T Consensus       323 ~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~Ikv  396 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKV  396 (537)
T ss_pred             eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEe
Confidence            444444 99999999998   67999999999999999999999999999999999998855 3 89999999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.59  E-value=1.2e-14  Score=133.16  Aligned_cols=142  Identities=18%  Similarity=0.250  Sum_probs=120.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +....++|+.|....||++..-   ..+..+.     +|...|+++.|+.+|.+||||+.+|.|+||...++       .
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~g---e~~~elt-----gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-------~  139 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTG---EFAGELT-----GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-------G  139 (399)
T ss_pred             CCceEEecCCCceEEEEEccCC---cceeEec-----CCCCceEEEEEccCceEEEecCCCccEEEEEcccC-------c
Confidence            4566789999999999998532   2344444     99999999999999999999999999999999997       1


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ........-..|-=+.|||. +.+|+.|+.||.|-+|.+.++...+.+.||..++++=.|.| +|+.++++..||+|++
T Consensus       140 ~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~  216 (399)
T KOG0296|consen  140 EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIV  216 (399)
T ss_pred             eEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEE
Confidence            11122234456788999998 99999999999999999999888999999999999999999 9999999999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.3e-14  Score=142.65  Aligned_cols=146  Identities=19%  Similarity=0.246  Sum_probs=122.4

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEe--CCCcEEEEEccccc
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAG--VSRRIKVFDFASVV  409 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s--~d~~i~vwd~~~~~  409 (495)
                      .+..++..+++|+.|+.+.|||..   ...++..+.     .|++.|.+++|+| ...+||+|+  .|++|++||+.++ 
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~---~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-  378 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGL---SPEPKFTFT-----EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-  378 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCC---CccccEEEe-----ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-
Confidence            445677889999999999999982   334455555     8999999999999 677999865  5999999999987 


Q ss_pred             cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE-ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS-SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s-g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                             ..+......+.|.++.|++....++.+ |-.+..|.||+..+...+..+.+|..+|..++++| ||..+++|+
T Consensus       379 -------~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a  450 (484)
T KOG0305|consen  379 -------ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGA  450 (484)
T ss_pred             -------cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEec
Confidence                   555666778899999999994444444 44566899999999999999999999999999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|.++++
T Consensus       451 ~DETlrf  457 (484)
T KOG0305|consen  451 ADETLRF  457 (484)
T ss_pred             ccCcEEe
Confidence            9999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=5.5e-15  Score=146.72  Aligned_cols=143  Identities=15%  Similarity=0.263  Sum_probs=124.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +++..++.|.-|++|++|-+   +.++....     ++||.-+|.++..+||+++++|||.|++|+||-++-|       
T Consensus       518 pdgk~LaVsLLdnTVkVyfl---DtlKFfls-----LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-------  582 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFL---DTLKFFLS-----LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------  582 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEe---cceeeeee-----ecccccceeEEeccCCcCeEEeccCCCceEEeccccc-------
Confidence            34555677777888888765   33332333     3499999999999999999999999999999999987       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+-...++|.+.|.++.|-|. ...|++++.|+.|+-||-.+-..++.+.+|...||+++.+| +|.+++|+|.|..|++
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRL  660 (888)
T ss_pred             hhhhhhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEe
Confidence            455566789999999999998 88999999999999999999999999999999999999999 9999999999999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=1.6e-14  Score=129.46  Aligned_cols=113  Identities=15%  Similarity=0.330  Sum_probs=95.9

Q ss_pred             CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      -.+.|.+|+|+| ...+++.+|.|++||+|++...     +...+.....|.++|.+++|+.| |..+++|+.|+.+++|
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-----g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-----GQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLW   99 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecC-----CcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEE
Confidence            467899999999 5667779999999999999874     11233445578899999999999 8999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCC--eEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~--~l~s~s~D~~v~l  495 (495)
                      |+.++ .+..+..|.++|.++.|-+ ...  .|+|||+|.+||.
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKF  141 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEec-CCCcceeEecccccceee
Confidence            99998 5677788999999999987 444  7899999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.57  E-value=8e-15  Score=129.15  Aligned_cols=112  Identities=17%  Similarity=0.163  Sum_probs=96.5

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +.+.++..-|.|-++.+++|..||.|.+||++++.       ..+.. ..|...|+.+.+++| ..+|++|+.|.+-++|
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------ELVDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLV  217 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------eeeechhhhccccccccccCC-cceEEecccCccceee
Confidence            56788888999999999999999999999999972       11221 247779999999999 9999999999999999


Q ss_pred             eCCCCcceeec-------------------------------------------------------ccccCcEEEEEeec
Q 048199          454 DVTTQQSVMEY-------------------------------------------------------EEHEKRAWSVDFSR  478 (495)
Q Consensus       454 d~~~~~~~~~~-------------------------------------------------------~~h~~~v~~v~~~~  478 (495)
                      |+++.+.++++                                                       +||-++|++|+|+|
T Consensus       218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence            98876554444                                                       57999999999999


Q ss_pred             CCCCeEEEeeCCCcEeC
Q 048199          479 TEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       479 ~~g~~l~s~s~D~~v~l  495 (495)
                       +|...+||+.||.|||
T Consensus       298 -dGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  298 -DGKSYSSGGEDGYVRL  313 (327)
T ss_pred             -CCcccccCCCCceEEE
Confidence             9999999999999985

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.57  E-value=2.1e-15  Score=111.10  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=57.1

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      .+.|.||||+++++|||+++|||+|++.||++|+.. ...||.|+++++..+|.+|..+...|+.+..
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~   69 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA   69 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence            467999999999999999999999999999999998 6899999999999999999999999998865

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.57  E-value=1.1e-14  Score=129.88  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=122.7

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCce---EEEEeec----cccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLR---VIAELRH----GDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFAS  407 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~---~~~~~~~----~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~  407 (495)
                      ..+..+.+|..|+.+.+||+.+....+   .+..-..    ..-.+|.-.|.++.|-| |.-.|.++|.|+++||||+.+
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            345567899999999999987654221   1111111    11126899999999999 556888999999999999998


Q ss_pred             cccCCCCcCCCeeecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199          408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~  485 (495)
                      .        .....+...+.|++-+|+|-.  -.+|++|..|-.|++.|+.+|.+..++.||.+.|.+|.|+|.....|+
T Consensus       134 l--------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLa  205 (397)
T KOG4283|consen  134 L--------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLA  205 (397)
T ss_pred             c--------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEE
Confidence            6        556667778889999999862  347888988999999999999999999999999999999997778899


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      |||.||.||+
T Consensus       206 tgsaDg~irl  215 (397)
T KOG4283|consen  206 TGSADGAIRL  215 (397)
T ss_pred             ecCCCceEEE
Confidence            9999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.56  E-value=2.7e-14  Score=125.81  Aligned_cols=153  Identities=17%  Similarity=0.242  Sum_probs=120.6

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .-.-++..+.+...|.+..+|-..   ..+.+.+..     ||++.|+++..+-+...++||+.|.++++||+.+++...
T Consensus        17 KyN~eGDLlFscaKD~~~~vw~s~---nGerlGty~-----GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la   88 (327)
T KOG0643|consen   17 KYNREGDLLFSCAKDSTPTVWYSL---NGERLGTYD-----GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA   88 (327)
T ss_pred             EecCCCcEEEEecCCCCceEEEec---CCceeeeec-----CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence            334567778888888888898652   234454444     999999999999999999999999999999999872210


Q ss_pred             C--------------C-------------------------------cCCCeeec-CCCCCeEEEEEcCCCCCEEEEecC
Q 048199          413 A--------------D-------------------------------VHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       413 ~--------------~-------------------------------~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      .              +                               ...|...+ .+.++++.+-|.|. +.+|++|..
T Consensus        89 ~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l-~~~ii~Ghe  167 (327)
T KOG0643|consen   89 TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL-GETIIAGHE  167 (327)
T ss_pred             EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc-CCEEEEecC
Confidence            0              0                               00111111 34467899999999 999999999


Q ss_pred             CCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          447 EGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       447 dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||.|.+||+++| +.+.+...|...|+.++|++ +..+++|+|.|.+-++
T Consensus       168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKL  216 (327)
T ss_pred             CCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCcccee
Confidence            999999999997 55677788999999999999 9999999999987654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.56  E-value=1.8e-14  Score=141.04  Aligned_cols=149  Identities=15%  Similarity=0.271  Sum_probs=124.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEE---Eeeccccc-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIA---ELRHGDIF-HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~---~~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .....+++|+-|..|+|||+..-.. ..+.   .+....+. ||...|++++-++.|..|++||..+-+++||.++.   
T Consensus       128 k~~~lvaSgGLD~~IflWDin~~~~-~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~---  203 (735)
T KOG0308|consen  128 KNNELVASGGLDRKIFLWDINTGTA-TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC---  203 (735)
T ss_pred             cCceeEEecCCCccEEEEEccCcch-hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc---
Confidence            3456678999999999999852211 0111   11112233 88999999999999999999999999999999997   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                          .......+|...|..+..+.| |..++|++.||+|++||+...+|+.++..|...||++..+| +-.++++|+.||
T Consensus       204 ----~kimkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~  277 (735)
T KOG0308|consen  204 ----KKIMKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDG  277 (735)
T ss_pred             ----cceeeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCC
Confidence                233344489999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cEe
Q 048199          492 KVL  494 (495)
Q Consensus       492 ~v~  494 (495)
                      .|.
T Consensus       278 ~i~  280 (735)
T KOG0308|consen  278 NIY  280 (735)
T ss_pred             cEE
Confidence            985

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.55  E-value=1.4e-15  Score=98.06  Aligned_cols=38  Identities=39%  Similarity=1.086  Sum_probs=31.5

Q ss_pred             cccccchhhhccccCCCCccchhhHHhhhcCC----CCCCCC
Q 048199           55 CPICMQIIKEAFLTACGHSFCYMCIITHLRNK----SDCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~----~~CP~C   92 (495)
                      ||||+++|++||+|+|||+||+.||.+|+...    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999999875    379988

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.3e-15  Score=148.85  Aligned_cols=143  Identities=19%  Similarity=0.307  Sum_probs=122.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .....+..|..++++++||+..-   ..+.+     +.+|...+.++.|||-+.++++|+.|..+++||++..       
T Consensus        80 ~~E~LlaagsasgtiK~wDleeA---k~vrt-----Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-------  144 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEEA---KIVRT-----LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-------  144 (825)
T ss_pred             cchhhhcccccCCceeeeehhhh---hhhhh-----hhccccCcceeeeccceEEeccccccccceehhhhcc-------
Confidence            34455678888999999998532   22333     4489999999999999999999999999999999964       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+....-+|...+..+.|+|+ |.++++|+.|.+++|||...|.....|.+|+..+.++.|+| ...++++||.|++|++
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRF  222 (825)
T ss_pred             CceeeecCCcceeEEEeecCC-CceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeee
Confidence            133333457777999999999 99999999999999999999999999999999999999999 8899999999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.1e-14  Score=125.00  Aligned_cols=148  Identities=14%  Similarity=0.131  Sum_probs=117.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEc-c-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFD-R-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +.++++.+.|.+|+|+..........+.++.     ||.++|+-++|- | .|.+|++++.||+|.||.-.++     ..
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-----Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-----~w   92 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELT-----GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-----RW   92 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEec-----CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-----ch
Confidence            4567888999999999987655556677777     999999999995 5 7999999999999999998886     11


Q ss_pred             CCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCC--c-ceeecccccCcEEEEEeecC--CC--------
Q 048199          416 HCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQ--Q-SVMEYEEHEKRAWSVDFSRT--EP--------  481 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~--~-~~~~~~~h~~~v~~v~~~~~--~g--------  481 (495)
                      ........|...|++++|-|. -|..|++++.||.|.|.+.+..  . .-.....|+-.|++++|.|.  .|        
T Consensus        93 ~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~  172 (299)
T KOG1332|consen   93 TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA  172 (299)
T ss_pred             hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence            112222358889999999775 2678999999999999998753  2 23445689999999999983  13        


Q ss_pred             ---CeEEEeeCCCcEeC
Q 048199          482 ---SMLVSGSDDCKVLY  495 (495)
Q Consensus       482 ---~~l~s~s~D~~v~l  495 (495)
                         +.|+||+.|..|+|
T Consensus       173 ~~~krlvSgGcDn~Vki  189 (299)
T KOG1332|consen  173 AKVKRLVSGGCDNLVKI  189 (299)
T ss_pred             cccceeeccCCccceee
Confidence               56999999999986

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.55  E-value=1.8e-12  Score=120.84  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=109.4

Q ss_pred             cCcccchhhHHhhhhhhhcc---------------------------cCceEEEEeeccccc---cCCCcEEEEEEccCC
Q 048199          339 EGYNAGLADFQSVLTTFTRY---------------------------SRLRVIAELRHGDIF---HSANIVSSIEFDRDD  388 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~---------------------------~~~~~~~~~~~~~~~---~h~~~V~~l~~~p~~  388 (495)
                      ...++|+.|.++++||+.+-                           ++....|+++.++..   .-.+.|+++..++++
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g  353 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG  353 (459)
T ss_pred             cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence            44788999999999997632                           111223333332211   124578888888888


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199          389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE  468 (495)
Q Consensus       389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~  468 (495)
                      ..+.+++.|.++++.|+++. .........  .+...+..+.+.|+|+ +.|+++|+.||.|+||++.++++...+....
T Consensus       354 ~~lLsssRDdtl~viDlRt~-eI~~~~sA~--g~k~asDwtrvvfSpd-~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~  429 (459)
T KOG0288|consen  354 LELLSSSRDDTLKVIDLRTK-EIRQTFSAE--GFKCASDWTRVVFSPD-GSYVAAGSADGSVYIWSVFTGKLEKVLSLST  429 (459)
T ss_pred             eEEeeecCCCceeeeecccc-cEEEEeecc--ccccccccceeEECCC-CceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence            88888888888888888875 000000011  1122334889999999 9999999999999999999999888877654


Q ss_pred             C--cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          469 K--RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       469 ~--~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .  .|++++|+| .|+.|++++.++.+.+
T Consensus       430 s~~aI~s~~W~~-sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  430 SNAAITSLSWNP-SGSGLLSADKQKAVTL  457 (459)
T ss_pred             CCcceEEEEEcC-CCchhhcccCCcceEe
Confidence            4  599999999 9999999999998864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.53  E-value=2.2e-14  Score=127.63  Aligned_cols=145  Identities=20%  Similarity=0.350  Sum_probs=114.1

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .....|..+.+|++....+  .+..+......+|....++-+|+|  +|+.+++.+ |+++..||+++..+      .-.
T Consensus       138 lasm~dn~i~l~~l~ess~--~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~------~~s  208 (370)
T KOG1007|consen  138 LASMDDNNIVLWSLDESSK--IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKK------NNS  208 (370)
T ss_pred             eEEeccCceEEEEcccCcc--hheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhh------hcc
Confidence            3345678899999864332  134443333335677888999998  788888876 99999999998611      122


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....|...+..++|+|....+|+|++.||.|+|||.+. ..++..+.+|..+||+|.|+|....+|+|||.|..|-+
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L  285 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL  285 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence            33367778999999999788999999999999999985 67899999999999999999988889999999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.53  E-value=7e-14  Score=126.01  Aligned_cols=146  Identities=13%  Similarity=0.208  Sum_probs=113.9

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC----Cc
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA----DV  415 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~  415 (495)
                      -+.+|++|+.+.+|+...   +..+..++     +|.+.|+.|+.||.+++-++.+.|+.+++||+-.+...+.    ..
T Consensus        99 hLlS~sdDG~i~iw~~~~---W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~  170 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGS---WELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK  170 (362)
T ss_pred             heeeecCCCcEEEEEcCC---eEEeeeec-----ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc
Confidence            688999999999999854   46677777     8999999999999999999999999999999987632211    00


Q ss_pred             CCCee----------------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          416 HCPVV----------------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       416 ~~~~~----------------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      ...+.                            .+....++.++.|-  ++..|++|..|+.|++||..++.++..|.+|
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH  248 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAH  248 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecc
Confidence            00000                            00111235555554  3779999999999999999999999999999


Q ss_pred             cCcEEEEEe-ecCCCCeEEEeeCCCcEeC
Q 048199          468 EKRAWSVDF-SRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       468 ~~~v~~v~~-~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+|.++.+ ...++.+|+|+|.||.|+|
T Consensus       249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  249 ENRVKDIASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             hhheeeeEEEecCCceEEEEeccCceEEE
Confidence            999999984 3227889999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.53  E-value=2.4e-14  Score=141.14  Aligned_cols=146  Identities=13%  Similarity=0.165  Sum_probs=118.5

Q ss_pred             CCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 048199          326 HTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDF  405 (495)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~  405 (495)
                      |...+-.........+.+|+.|.++++|......     ..     +.+|+..|+++.+-|.+ .++|||.|++||+|.-
T Consensus       100 H~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~-----~~-----l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~  168 (745)
T KOG0301|consen  100 HKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELV-----YS-----LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG  168 (745)
T ss_pred             cccceeeeecCCcCceEecccccceEEecchhhh-----cc-----cCCcchheeeeeecCCC-cEEeccCcceeeeccC
Confidence            3333333333444447999999999999985432     22     33999999999999977 7789999999999987


Q ss_pred             cccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199          406 ASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~  485 (495)
                      .+.         .....+|.+-|.++++-++  ..|+|++.||.|++||+ +|.++..+.||+.-|+++.... ++..++
T Consensus       169 ~~~---------l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv  235 (745)
T KOG0301|consen  169 GTL---------LKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV  235 (745)
T ss_pred             Cch---------hhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence            553         2234468889999999876  46899999999999998 7999999999999999999777 788999


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      |++.|++++|
T Consensus       236 s~gEDrtlri  245 (745)
T KOG0301|consen  236 STGEDRTLRI  245 (745)
T ss_pred             EecCCceEEE
Confidence            9999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.52  E-value=1.1e-13  Score=130.84  Aligned_cols=140  Identities=19%  Similarity=0.250  Sum_probs=116.6

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+..+..|+.+.+|++..   ...+..+.     .|...|.++.|+|+++.+++++.|+.|++||+..+        .
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------~  210 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRT---GKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------K  210 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccc---cccceeEe-----cCccccceEEECCCcCEEEEecCCCcEEEEECCCC--------c
Confidence            34455555588999999842   22333343     67789999999999999999999999999999875        3


Q ss_pred             Ceeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....+ .+...+.++.|+|+ +.++++++.||.|++||+.++..+..+.+|...|.+++|++ ++.+|++++.|+.|++
T Consensus       211 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i  287 (289)
T cd00200         211 CLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRI  287 (289)
T ss_pred             eecchhhcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEe
Confidence            33334 56778999999999 88999999899999999999999999999999999999999 8999999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=1.7e-14  Score=143.81  Aligned_cols=107  Identities=16%  Similarity=0.303  Sum_probs=87.5

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ....+.+|+.|++|++||+...+.   ..+..     +....|+++.|+| .+.+|+++...|.+++||++...      
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S---~~t~~-----~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------  210 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKS---KSTFR-----SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------  210 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccc---ccccc-----ccchhhhceeeccCCCceEEEecCCceEEEeeccCch------
Confidence            346678999999999999964322   22222     5678899999999 78899999999999999999861      


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ  458 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~  458 (495)
                      ........|.++|.++.|||+ +.+||||+.|+.|+|||+.++
T Consensus       211 r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  211 RCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             hHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCC
Confidence            233444579999999999997 999999999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.52  E-value=2.4e-12  Score=120.79  Aligned_cols=140  Identities=18%  Similarity=0.230  Sum_probs=119.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      +...+|+.|..+.++|..   ....+..++     ||+-.|+++.|||+...+++++.|..|+||.....       ..+
T Consensus       232 ~~ilTGG~d~~av~~d~~---s~q~l~~~~-----Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------s~~  296 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKP---SNQILATLK-----GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------SEP  296 (506)
T ss_pred             CcceecCCCCceEEEecc---hhhhhhhcc-----CcceEEEEEEeccchhheeecCCcceEEeeccccc-------cCc
Confidence            556789899888888763   233445555     99999999999999999999999999999998876       466


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .....|..+|+.+..||. +.||++++.||+.-+.|+++|..+......  .-.+++.+|+| ||-+|.+|..||.|+|
T Consensus       297 ~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEE
Confidence            667789999999999999 999999999999999999999887766532  23588999999 9999999999999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.51  E-value=6.3e-14  Score=125.60  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=106.9

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .+..|+.|++|++|++.....+.+  .    -...|.++|.+++|+.+|..+++|+.|+.+++||+.++        ...
T Consensus        42 ~~~A~SWD~tVR~wevq~~g~~~~--k----a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--------Q~~  107 (347)
T KOG0647|consen   42 LLAAGSWDGTVRIWEVQNSGQLVP--K----AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--------QVS  107 (347)
T ss_pred             eEEecccCCceEEEEEecCCcccc--h----hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--------Cee
Confidence            355899999999999975333222  1    12268999999999999999999999999999999997        333


Q ss_pred             eecCCCCCeEEEEEcCCCCC--EEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          420 VEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~--~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ..-.|.++|..+.|-+. ..  .|+|||+|.+|++||.+...++.++. -..+|++++.-.   .+++.+..++.|.
T Consensus       108 ~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~  179 (347)
T KOG0647|consen  108 QVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIA  179 (347)
T ss_pred             eeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEE
Confidence            34468899999999766 44  89999999999999999988888876 456788776543   4666666666654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2e-13  Score=117.45  Aligned_cols=111  Identities=15%  Similarity=0.275  Sum_probs=96.3

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--------CCCCeEEEEEcCCCCCEEEEec
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--------TRSKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~p~~~~~l~sg~  445 (495)
                      ||++.|.++ ++=++..|++|+.|++||+||++-.        ..+..+.        ..+.|.+++..|. |.+|++|-
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~--------~~v~~l~~~~~~~glessavaav~vdps-grll~sg~  250 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN--------SCVNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGH  250 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeecc--------ceeeeccCcccCCCcccceeEEEEECCC-cceeeecc
Confidence            899999887 3337889999999999999999876        1222111        1246899999999 99999999


Q ss_pred             CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|....+||++-++.++.|..|+..|.+|.|+| ...+|+++|+|..||+
T Consensus       251 ~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKL  299 (350)
T ss_pred             CCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEE
Confidence            999999999999999999999999999999999 8899999999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.51  E-value=1.5e-13  Score=139.99  Aligned_cols=138  Identities=20%  Similarity=0.271  Sum_probs=115.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ...+.+|++|.++.+|+..  ..+.....+.     ||.+.|++++|..-+.++++|+.|++++|||+.++       .+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~-----GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-------~C  283 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLN--NGYLILTRLV-----GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-------EC  283 (537)
T ss_pred             cCeEEecCCCceeEEeecc--cceEEEeecc-----CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------cE
Confidence            3456788888899999874  2222222244     99999999999877889999999999999999988       44


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .....+|.+.+.++...   +.++++|+.|.+|++||+.++.++..+.+|.++|+++.++   +.++++|+.|++|++
T Consensus       284 ~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKV  355 (537)
T ss_pred             EEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEE
Confidence            45555788899999887   4589999999999999999999999999999999999985   589999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.50  E-value=2.1e-13  Score=130.59  Aligned_cols=116  Identities=16%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             ccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          371 DIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       371 ~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      ++.||...|.++.|-|... .++|||.|.+|.+|+=...       +.......|..-|+++.|+|| |..|+|.+.||+
T Consensus       142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-------KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgk  213 (603)
T KOG0318|consen  142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-------KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGK  213 (603)
T ss_pred             eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-------eeeecccccccceeeEEECCC-CCeEEEecCCcc
Confidence            3345555555555555444 3555555665555543221       111122246667999999999 999999999999


Q ss_pred             EEEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          450 VTVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |.+||=.+|+.+..|.   +|.+.|++++|+| |+..++|+|.|.++||
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKI  261 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEE
Confidence            9999999999999998   8999999999999 9999999999999986

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.49  E-value=2.2e-14  Score=138.05  Aligned_cols=73  Identities=29%  Similarity=0.672  Sum_probs=67.4

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      +.++.++..+.|+||++.|.+|++++|||+||..||..|+.....||.|+..+....+..|+.+.++|+.+..
T Consensus        18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999988899999999988889999999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=4.5e-14  Score=137.70  Aligned_cols=118  Identities=15%  Similarity=0.349  Sum_probs=102.3

Q ss_pred             CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEcccc-ccCCCCcCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASV-VNEPADVHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      ....|+++.|+| |.+.|+.++.|+.|++|.+..+ ....  ...+ .....|..+|+++.|||--.+.|+++++|.+|+
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--cCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            357899999999 7889999999999999999876 1111  1122 223468889999999998788999999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +||+.++.....|.+|++.|.+++|+| +|..+||.+.||+|++
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV  746 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence            999999999999999999999999999 9999999999999985

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=123.75  Aligned_cols=144  Identities=17%  Similarity=0.213  Sum_probs=113.4

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +...+..++.|..++.+.|||+..+.   ....+.     +|.-+|++++|+++|++|+|+|.|.+|++||+..+     
T Consensus        31 Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~ls-----aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-----   97 (405)
T KOG1273|consen   31 FSRWGDYLAVGCANGRVVIYDFDTFR---IARMLS-----AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-----   97 (405)
T ss_pred             eccCcceeeeeccCCcEEEEEccccc---hhhhhh-----ccccceeEEEecCCCCEeeeecCCceeEEEeccCC-----
Confidence            34456778899999999999996443   122222     79999999999999999999999999999999887     


Q ss_pred             CcCCCeeecCCCCCeEE-----------------------------------------------EEEcCCCCCEEEEecC
Q 048199          414 DVHCPVVEMPTRSKLSC-----------------------------------------------LSWNKFSKNRIASSDY  446 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~-----------------------------------------------~~~~p~~~~~l~sg~~  446 (495)
                         .++..+...++|+.                                               ..|++. |.+|++|..
T Consensus        98 ---s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGts  173 (405)
T KOG1273|consen   98 ---SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGTS  173 (405)
T ss_pred             ---CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEecC
Confidence               12222212222222                                               235555 899999999


Q ss_pred             CCcEEEEeCCCCcceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|.+.++|..+.+++..++-.. ..|..+.|+. .|..|+.-+.|+.||.
T Consensus       174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~  222 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRT  222 (405)
T ss_pred             cceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEE
Confidence            9999999999999999988665 7889999999 9999999999999873

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.48  E-value=6e-13  Score=125.86  Aligned_cols=143  Identities=18%  Similarity=0.260  Sum_probs=118.0

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..++.|..|+.+.+|++...   .....+.     .|...+..+.|+|++++|++++.|+.|++||+..+       
T Consensus        19 ~~~~~l~~~~~~g~i~i~~~~~~---~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------   83 (289)
T cd00200          19 PDGKLLATGSGDGTIKVWDLETG---ELLRTLK-----GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------   83 (289)
T ss_pred             CCCCEEEEeecCcEEEEEEeeCC---CcEEEEe-----cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------
Confidence            34466778888899999998532   2233333     67888999999999999999999999999999875       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ........|...+.++.|+++ +.++++++.||.|.+||+.++.....+..|...|.+++|+| ++.++++++.|+.|++
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i  161 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKL  161 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEE
Confidence            122233356678999999999 88999998899999999999999999999999999999999 8889999888998864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.3e-13  Score=120.14  Aligned_cols=117  Identities=18%  Similarity=0.267  Sum_probs=97.5

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE-cCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW-NKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~~l~sg~~dg~v~i  452 (495)
                      .|.+.|-++..+--|..|+|++.|++||||.++....    ........+|.++++.++| ||.-|.+|+|+++||.|.|
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            6888888888887899999999999999999998711    0223345589999999999 6666999999999999999


Q ss_pred             EeCCCCc--ceeecccccCcEEEEEeecCC--CCeEEEeeCCCcEeC
Q 048199          453 WDVTTQQ--SVMEYEEHEKRAWSVDFSRTE--PSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~--~~~~~~~h~~~v~~v~~~~~~--g~~l~s~s~D~~v~l  495 (495)
                      |.-.+|+  ....+..|...|++|+|.| +  |-+|+++|.||.|.|
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSV  130 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEE
Confidence            9988774  4556678999999999998 5  447899999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=1.4e-13  Score=130.87  Aligned_cols=112  Identities=24%  Similarity=0.359  Sum_probs=99.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...|+++.|..||.+|+.|...|.|+|||+.+.        ..+. ...|..++..+.|+|+++..|++|+.|+.+++||
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            356999999999999999999999999996653        2222 3368889999999999889999999999999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.+......+.+|++.|.+.+|+|.++.+++|||+||+||+
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            99988767899999999999999988889999999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=4.2e-13  Score=121.07  Aligned_cols=112  Identities=13%  Similarity=0.232  Sum_probs=100.1

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~i  452 (495)
                      .|.+.|+++++  ++.++++||.|-+|+|||+...       ........|.+.|+++.|.+. ..+.|++|+.||.|.+
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccch-------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            79999999999  6889999999999999999986       233344578899999999877 2348999999999999


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||+..-.++.++.+|.+.|+.++.+| .+.+-+|.+.|+.+++
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~  153 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRT  153 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeee
Confidence            99999999999999999999999999 9999999999998874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.46  E-value=3.6e-13  Score=133.02  Aligned_cols=148  Identities=16%  Similarity=0.181  Sum_probs=115.9

Q ss_pred             CCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          324 QPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      .+|.-.+-.....+...+.+|+.|.++++|.-.     ..+.++.     ||++.|+++++-+++ .|++++.||.|++|
T Consensus       137 ~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~-----~~l~tf~-----gHtD~VRgL~vl~~~-~flScsNDg~Ir~w  205 (745)
T KOG0301|consen  137 QGHTASVWAVASLPENTYVTGSADKTIKLWKGG-----TLLKTFS-----GHTDCVRGLAVLDDS-HFLSCSNDGSIRLW  205 (745)
T ss_pred             CCcchheeeeeecCCCcEEeccCcceeeeccCC-----chhhhhc-----cchhheeeeEEecCC-CeEeecCCceEEEE
Confidence            344433333444555689999999999999863     2244444     999999999998865 45699999999999


Q ss_pred             EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199          404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      ++...        ......+|.+-+++++..++ +..|+|.+.|++++||+..  ++++.+.--+..||++.+-+ +|. 
T Consensus       206 ~~~ge--------~l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-  272 (745)
T KOG0301|consen  206 DLDGE--------VLLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-  272 (745)
T ss_pred             eccCc--------eeeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-
Confidence            99654        55566688899999996666 6799999999999999976  77787774455899999988 775 


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      |++|+.||.|||
T Consensus       273 Ivvg~SDG~VrV  284 (745)
T KOG0301|consen  273 IVVGGSDGRVRV  284 (745)
T ss_pred             EEEeccCceEEE
Confidence            678888999986

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.46  E-value=1.2e-14  Score=131.30  Aligned_cols=73  Identities=32%  Similarity=0.688  Sum_probs=68.0

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      +.+..++..|.|.||+++|.-|+++||||+||.-||.+++...+.||.|+.+++..+|+.|+.+..+++.+..
T Consensus        15 pslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   15 PSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             chhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            3457788899999999999999999999999999999999999999999999999999999999999988754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.46  E-value=1.1e-13  Score=126.94  Aligned_cols=136  Identities=18%  Similarity=0.277  Sum_probs=111.7

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      .+++++.  .+-|||..   +..++..+.     ...+.|.++.|+|.. .+|++|+.|++|.+||++..        .|
T Consensus       161 ~FaTcGe--~i~IWD~~---R~~Pv~sms-----wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~--------~P  222 (433)
T KOG0268|consen  161 VFATCGE--QIDIWDEQ---RDNPVSSMS-----WGADSISSVKFNPVETSILASCASDRSIVLYDLRQA--------SP  222 (433)
T ss_pred             cccccCc--eeeecccc---cCCccceee-----cCCCceeEEecCCCcchheeeeccCCceEEEecccC--------Cc
Confidence            3444443  35578764   334566665     346789999999954 47888889999999999997        56


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +....-..+.+.|+|+|. ...|++|+.|..+..||++. .+++..+.+|...|.+|+|+| .|.-++|||.|.+|+|
T Consensus       223 l~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRI  298 (433)
T KOG0268|consen  223 LKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRI  298 (433)
T ss_pred             cceeeeeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEE
Confidence            665556667789999996 99999999999999999987 578899999999999999999 9999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=3.8e-13  Score=125.27  Aligned_cols=115  Identities=15%  Similarity=0.247  Sum_probs=100.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|+..|+-+.|+++|++|||++.|.+.-+|++.....    ..-.....+|..+|..+.|+|| ..+|++++.|..+.+|
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLW  296 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCC-CCeEEecCchHheeec
Confidence            7999999999999999999999999999999876511    1123345589999999999999 8899999999999999


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |+.+|..+..+. +|...+.+.+|.| ||..+++||.|+.+.
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTII  337 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEE
Confidence            999999887775 3567899999999 999999999999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.45  E-value=2.8e-13  Score=120.70  Aligned_cols=136  Identities=18%  Similarity=0.296  Sum_probs=107.6

Q ss_pred             hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeec-C
Q 048199          346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-P  423 (495)
Q Consensus       346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~  423 (495)
                      .|.++..||....   ...+.+..    .|...|+++.|+|+.+ +|+|||.|+.|||||++..       ..|+... +
T Consensus       191 ~d~tl~~~D~RT~---~~~~sI~d----AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------k~pv~el~~  256 (370)
T KOG1007|consen  191 SDSTLQFWDLRTM---KKNNSIED----AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------KFPVQELPG  256 (370)
T ss_pred             CCCcEEEEEccch---hhhcchhh----hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-------CccccccCC
Confidence            3446666776422   22333332    5888999999999766 7889999999999999987       5666666 5


Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-----------------------------cceeecccccCcEEEE
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-----------------------------QSVMEYEEHEKRAWSV  474 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-----------------------------~~~~~~~~h~~~v~~v  474 (495)
                      |...||++.|+|....+|+||+.|..|.+|...+-                             ..+.+|..|++.|+++
T Consensus       257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~  336 (370)
T KOG1007|consen  257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL  336 (370)
T ss_pred             CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence            77799999999998899999999999999964210                             1355788899999999


Q ss_pred             EeecCCCCeEEEeeCCCcEeC
Q 048199          475 DFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       475 ~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|+..++=++||-|+||+|-|
T Consensus       337 aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  337 AWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             eeccCCCeeEEEeccCceEEe
Confidence            999888989999999999854

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.45  E-value=1.2e-13  Score=131.80  Aligned_cols=142  Identities=15%  Similarity=0.223  Sum_probs=108.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ...+++.+.|.+++||++.+..+  .+..+++.-..+..-.|+..+|+|+|.+||+|..||+|.+|+.....      ..
T Consensus       281 k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~  352 (641)
T KOG0772|consen  281 KEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VR  352 (641)
T ss_pred             ccceEEecCCCcEEEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cc
Confidence            45688899999999999975443  33344432222456688999999999999999999999999986641      12


Q ss_pred             Ceee--cCCCC--CeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeecccc--cCcEEEEEeecCCCCeEEEeeC
Q 048199          418 PVVE--MPTRS--KLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       418 ~~~~--~~~~~--~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ++..  -.|..  .|+||.|++| |++|+|-+.|+++++||++. .+++..+.+-  ..+-+.++|+| +..+|++|+.
T Consensus       353 p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS  429 (641)
T KOG0772|consen  353 PVMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTS  429 (641)
T ss_pred             cceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEeccc
Confidence            3332  25665  7999999999 99999999999999999986 4566666553  33567889999 8899999874

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.44  E-value=2.9e-14  Score=121.86  Aligned_cols=59  Identities=29%  Similarity=0.747  Sum_probs=51.0

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhhhcC----------------CCCCCCCCCcCccCCCcchHH
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN----------------KSDCPCCGHYLTNNQLYPNFL  106 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~----------------~~~CP~Cr~~~~~~~l~~n~~  106 (495)
                      +..+++.|+||++.+++|++++|||+||+.||.+|+..                ...||.||.+++..++.+++.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            44567999999999999999999999999999999742                258999999999888877753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.44  E-value=3.8e-13  Score=120.17  Aligned_cols=142  Identities=14%  Similarity=0.191  Sum_probs=112.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccCCC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +...+.+++.|.++++||..   ......+++      -.+.|++-+++|-   -.++|+|..|-.|++.|+.++     
T Consensus       113 DtGmFtssSFDhtlKVWDtn---TlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-----  178 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTN---TLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-----  178 (397)
T ss_pred             cCceeecccccceEEEeecc---cceeeEEee------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-----
Confidence            34557789999999999973   333333333      2467888888883   237778888999999999998     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceee--------------cccccCcEEEEEeec
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVME--------------YEEHEKRAWSVDFSR  478 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~--------------~~~h~~~v~~v~~~~  478 (495)
                        .+.....+|.+.|.++.|+|...-+|++|+.||.|++||++.. .++..              -..|.+.|++++|+.
T Consensus       179 --s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  179 --SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             --cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence              4555666899999999999997888999999999999999853 33332              235778999999999


Q ss_pred             CCCCeEEEeeCCCcEeC
Q 048199          479 TEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       479 ~~g~~l~s~s~D~~v~l  495 (495)
                       ++.++++++.|..+++
T Consensus       257 -d~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  257 -DARYLASCGTDDRIRV  272 (397)
T ss_pred             -cchhhhhccCccceEE
Confidence             9999999999988874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.44  E-value=4.8e-13  Score=123.30  Aligned_cols=143  Identities=18%  Similarity=0.317  Sum_probs=111.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+++++-|++++|||+..-.+...+.+ +     .|.+-|..|+|+..-.+|++|+.||+++|||++..     ....|
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-----Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~-----~~~~p  339 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAVST-K-----AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF-----KSGQP  339 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCccceeEe-e-----ccCCceeeEEccCCcceeeecCCCceEEEEEhhhc-----cCCCc
Confidence            4578899999999999964333333333 3     78899999999998789999999999999999986     22356


Q ss_pred             eeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc----------------ceeecccc--cCcEEEEEeecC
Q 048199          419 VVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----------------SVMEYEEH--EKRAWSVDFSRT  479 (495)
Q Consensus       419 ~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~----------------~~~~~~~h--~~~v~~v~~~~~  479 (495)
                      +..+ .|..+|+++.|+|.....|++++.|..|.|||+..-.                +-+-+.-|  ...|..|.|++-
T Consensus       340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence            6655 5888999999999878899999999999999985311                11122235  346888999987


Q ss_pred             CCCeEEEeeCCCc
Q 048199          480 EPSMLVSGSDDCK  492 (495)
Q Consensus       480 ~g~~l~s~s~D~~  492 (495)
                      .+.+|+|.+.||.
T Consensus       420 iPG~lvsTa~dGf  432 (440)
T KOG0302|consen  420 IPGLLVSTAIDGF  432 (440)
T ss_pred             CCCeEEEecccce
Confidence            7889999999985

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.42  E-value=4.7e-14  Score=96.11  Aligned_cols=62  Identities=31%  Similarity=0.675  Sum_probs=36.8

Q ss_pred             CCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHH
Q 048199           48 ELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLL  111 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v  111 (495)
                      .+++.|.|++|.+++++||.+ .|.|+||..||.+.+..  .||+|+.+....|++.|..+.+++
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence            456778999999999999965 89999999999987653  599999999999999999988774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.42  E-value=4.9e-13  Score=125.73  Aligned_cols=148  Identities=14%  Similarity=0.221  Sum_probs=113.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeecc-------------ccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-------------DIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-------------~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd  404 (495)
                      ...+-|.-|..|.|||+.-.+...+...+...             ...+|++.|.+++|+. ..++||+||.|++|++||
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            34566777889999997543444444444311             1126999999999987 567999999999999999


Q ss_pred             ccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199          405 FASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      +.++        .+...+. |.++|.++.|||..+.+|++|++|++|.+.|.+........-.-.+.|-.++|.|.....
T Consensus       273 ~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  273 VDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENS  344 (463)
T ss_pred             cCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCcee
Confidence            9998        5555554 777899999999989999999999999999998532222222235678899999977788


Q ss_pred             EEEeeCCCcEe
Q 048199          484 LVSGSDDCKVL  494 (495)
Q Consensus       484 l~s~s~D~~v~  494 (495)
                      ++++.+||+|+
T Consensus       345 f~~~tddG~v~  355 (463)
T KOG0270|consen  345 FFVSTDDGTVY  355 (463)
T ss_pred             EEEecCCceEE
Confidence            99999999987

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.41  E-value=3.1e-13  Score=125.78  Aligned_cols=151  Identities=17%  Similarity=0.216  Sum_probs=118.6

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc-c--cCC---
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV-V--NEP---  412 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~-~--~~~---  412 (495)
                      .+++|+.|..++||.+.+.........+.. +.+.+|...|+.+.|+|+|++|+||+.++.|.+|-.... .  ...   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            688999999999999865432221111111 234489999999999999999999999999999987621 0  000   


Q ss_pred             --C-CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          413 --A-DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       413 --~-~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                        . .........+|...|+.++|+|+ ++++++|+.|.++++||+..|..+..+.+|...|..++|.| -+.++++-|.
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~  185 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSS  185 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhcc
Confidence              0 01111223368888999999999 99999999999999999999999999999999999999999 8889999888


Q ss_pred             CCc
Q 048199          490 DCK  492 (495)
Q Consensus       490 D~~  492 (495)
                      |..
T Consensus       186 dr~  188 (434)
T KOG1009|consen  186 DRH  188 (434)
T ss_pred             Ccc
Confidence            873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.41  E-value=5.2e-13  Score=127.17  Aligned_cols=136  Identities=18%  Similarity=0.261  Sum_probs=110.6

Q ss_pred             hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---
Q 048199          346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---  422 (495)
Q Consensus       346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---  422 (495)
                      ..+-|+|||+..-....++..+.   +..-...|++..+.|||+.|++||.-.++.|||+...        ++....   
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLd---cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap--------Tprikaelt  506 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLD---CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP--------TPRIKAELT  506 (705)
T ss_pred             CCCeEEEeeccCCCCCCcccccc---ccCcccceeeeEecCCCceEEeccccceeeeeeccCC--------CcchhhhcC
Confidence            34568999987554444444443   2234678999999999999999999999999999986        221111   


Q ss_pred             CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          423 PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       423 ~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...-..++++.+|| .++.+++..||.|.|||+.+...+..|.||.+.+.||.+++ +|+.|-||+-|.+||
T Consensus       507 ssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvR  576 (705)
T KOG0639|consen  507 SSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVR  576 (705)
T ss_pred             CcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCcccee
Confidence            11224678899999 88999999999999999999999999999999999999999 999999999999997

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.9e-12  Score=122.60  Aligned_cols=146  Identities=14%  Similarity=0.162  Sum_probs=120.0

Q ss_pred             cccccCcccchhhHHhhhhhhhcc----c--CceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEcc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRY----S--RLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFA  406 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~----~--~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~  406 (495)
                      ..+++.+.+|+.|+.|.+|.+...    .  ...++..+.     +|+-+|+++...+.  ..+++|+|.|.++|+||+.
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-----~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-----DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-----cCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            346778899999999999987532    1  123344444     89999999998874  4589999999999999999


Q ss_pred             ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----------------CcceeecccccC-
Q 048199          407 SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----------------QQSVMEYEEHEK-  469 (495)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----------------~~~~~~~~~h~~-  469 (495)
                      .+        .....+.....+.+++.+|. +..++.|+.+|.|.+.++..                +..+..+.||.+ 
T Consensus       207 ~g--------~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~  277 (476)
T KOG0646|consen  207 LG--------VLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE  277 (476)
T ss_pred             cc--------eeeEEEecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence            97        45566667788999999999 99999999999999988753                234567789988 


Q ss_pred             -cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          470 -RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       470 -~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .|++++++- ||.+|+||+.||.|+|
T Consensus       278 ~~ITcLais~-DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  278 SAITCLAIST-DGTLLLSGDEDGKVCV  303 (476)
T ss_pred             cceeEEEEec-CccEEEeeCCCCCEEE
Confidence             999999999 9999999999999975

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.4e-13  Score=131.31  Aligned_cols=147  Identities=17%  Similarity=0.245  Sum_probs=122.3

Q ss_pred             ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      ..+..++..++.|..++.+.|||.....   .+..+..    +|.+.|-+++|.  +..+.+|+.|+.|..+|++...  
T Consensus       223 v~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~~----~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~--  291 (484)
T KOG0305|consen  223 VKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLRG----SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ--  291 (484)
T ss_pred             EEECCCCCEEEEeecCCeEEEEehhhcc---ccccccC----CcCceeEEEecc--CceEEEecCCCcEEEEEEecch--
Confidence            3444567778889999999999985432   2444441    399999999996  7789999999999999999871  


Q ss_pred             CCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC-
Q 048199          412 PADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD-  489 (495)
Q Consensus       412 ~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~-  489 (495)
                           ..+. ..+|...|..+.|++| +.++|+|+.|+.+.|||.....+...+.+|...|..++|+|-...+||+|+. 
T Consensus       292 -----~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  292 -----HVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             -----hhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence                 1122 4468888999999999 9999999999999999998889999999999999999999977889999885 


Q ss_pred             -CCcEeC
Q 048199          490 -DCKVLY  495 (495)
Q Consensus       490 -D~~v~l  495 (495)
                       |++|++
T Consensus       366 ~D~~i~f  372 (484)
T KOG0305|consen  366 ADRCIKF  372 (484)
T ss_pred             cccEEEE
Confidence             888874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.40  E-value=8.8e-13  Score=136.72  Aligned_cols=150  Identities=14%  Similarity=0.174  Sum_probs=120.2

Q ss_pred             CCCcccccc-ccccccCcccchhhHHhhhhhhhc------cc---------CceEEEEeeccccccCCCcEEEEEEccCC
Q 048199          325 PHTKQESDK-NIIHREGYNAGLADFQSVLTTFTR------YS---------RLRVIAELRHGDIFHSANIVSSIEFDRDD  388 (495)
Q Consensus       325 ~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~------~~---------~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  388 (495)
                      .|.+.+++. +..++..+++|++|..+.||....      +.         +.+.+..+.     +|.+.|.++.|+|++
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-----~H~~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-----GHDSDVLDVNWSPDD  141 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-----cCCCccceeccCCCc
Confidence            344555566 567889999999999999998752      11         112333334     899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-
Q 048199          389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-  467 (495)
Q Consensus       389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-  467 (495)
                      .+|+++|.|.+|.|||..+.       .......+|.+.|-.+.|.|- |.||+|-+.|++|+||++.+-...+.+.++ 
T Consensus       142 ~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             cEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            99999999999999999986       344455689999999999999 999999999999999997765555555544 


Q ss_pred             -----cCcEEEEEeecCCCCeEEEee
Q 048199          468 -----EKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       468 -----~~~v~~v~~~~~~g~~l~s~s  488 (495)
                           .....-+.|+| ||.+|++.-
T Consensus       214 ~~~~~~T~f~RlSWSP-DG~~las~n  238 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSP-DGHHLASPN  238 (942)
T ss_pred             hhCCCcceeeecccCC-CcCeecchh
Confidence                 23567899999 999999875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=1.3e-12  Score=117.85  Aligned_cols=167  Identities=19%  Similarity=0.134  Sum_probs=127.9

Q ss_pred             hhhhccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcc---------------------cCceEE---------EE
Q 048199          318 RRQMANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRY---------------------SRLRVI---------AE  366 (495)
Q Consensus       318 r~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~---------------------~~~~~~---------~~  366 (495)
                      ++...|.+|.+.++...+ .++..+.+|++|.+..||...-.                     ++...-         .+
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            344456677766666555 45566789999999999983200                     000000         00


Q ss_pred             eec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEE
Q 048199          367 LRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIAS  443 (495)
Q Consensus       367 ~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~s  443 (495)
                      ++.  -.+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++        .++. ..+|...++-++-||. ..++++
T Consensus       261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg--------e~v~~LtGHd~ELtHcstHpt-QrLVvT  331 (481)
T KOG0300|consen  261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG--------EVVNILTGHDSELTHCSTHPT-QRLVVT  331 (481)
T ss_pred             eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC--------ceeccccCcchhccccccCCc-ceEEEE
Confidence            110  123389999999999999999999999999999999998        3333 3478888999999999 889999


Q ss_pred             ecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          444 SDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       444 g~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++.|.++++||++. -..+..|.||.+.|+++.|+.  ++.++|||+|.+|||
T Consensus       332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKv  382 (481)
T KOG0300|consen  332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKV  382 (481)
T ss_pred             eccCceeEeccchhhcceeeeecccccceeEEEEec--CCceeecCCCceEEE
Confidence            99999999999985 456889999999999999995  567999999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.39  E-value=4.9e-12  Score=116.31  Aligned_cols=112  Identities=18%  Similarity=0.272  Sum_probs=101.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|++.|.+++.+|+.++++|||.|-...+|++.++       ..+....+|...|+++.|+-+ +.+|+||+.+|.|+||
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVF  133 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEE
Confidence            89999999999999999999999999999999998       345566689999999999999 9999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ++.++.....+...-..|--+.|+| .+.+|+.|+.||.|-
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvW  173 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVW  173 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEE
Confidence            9999988888875556677799999 999999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.39  E-value=1.2e-12  Score=121.29  Aligned_cols=137  Identities=12%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      +...+++|++|.+++||.+-...-    ..++..+.     ||+..|--+.|||. .+.|+|+|.|.+|.+||+.++   
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-----gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg---  164 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-----GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG---  164 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEe-----ecceeEEEEeecccchhhHhhccCCceEEEEeccCC---
Confidence            345678999999999999753221    23444554     99999999999995 668999999999999999998   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEeecCCCCeEEEeeC
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~g~~l~s~s~  489 (495)
                           ..+..+.|.+.|+++.|+-+ |.+|++.+.|..|+|||.++++.+..-.+|.+. -.-+.|-. +|. ++|.+.
T Consensus       165 -----eali~l~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~-i~tTGf  235 (472)
T KOG0303|consen  165 -----EALITLDHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGK-IFTTGF  235 (472)
T ss_pred             -----ceeeecCCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCc-eeeecc
Confidence                 44555679999999999999 999999999999999999999999888888652 23345665 777 555543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.39  E-value=4.2e-13  Score=117.30  Aligned_cols=138  Identities=20%  Similarity=0.307  Sum_probs=109.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +....+++..||+.++|+...-+.   +..+      .|...|.+++|+.|.++|+||+.++.+||||++..       .
T Consensus        70 na~~aasaaadftakvw~a~tgde---lhsf------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p-------~  133 (334)
T KOG0278|consen   70 NATRAASAAADFTAKVWDAVTGDE---LHSF------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP-------K  133 (334)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhh---hhhh------hhhheeeeEEecccchhhhccchHHHhhhhhccCC-------C
Confidence            345567899999999999742211   2222      57889999999999999999999999999999987       3


Q ss_pred             CCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          417 CPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       417 ~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+... -+|.+.|..+-|-.. ...|+|+++|++|++||.+++..++++. ...+|+++.+++ +|.+|..+ +.+.|+
T Consensus       134 App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gssV~  208 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGSSVK  208 (334)
T ss_pred             CCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEEe-cCceeE
Confidence            33333 368889999999776 6788888999999999999999999987 466899999999 88777554 444443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=4.9e-12  Score=114.13  Aligned_cols=147  Identities=16%  Similarity=0.236  Sum_probs=116.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-------
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-------  411 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-------  411 (495)
                      ..+.+++.|.+.+||.+.   ....+....     ||.+.|.+|.||+.+.++++++.|++..||...-....       
T Consensus       161 pi~gtASADhTA~iWs~E---sg~CL~~Y~-----GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~  232 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLE---SGACLATYT-----GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS  232 (481)
T ss_pred             cceeecccccceeEEeec---cccceeeec-----ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence            345677778888888773   233444444     89999999999999999999999999999983211000       


Q ss_pred             ----------------CC---------CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199          412 ----------------PA---------DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       412 ----------------~~---------~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~  465 (495)
                                      ..         ....|+.. .+|.+.|.++.|-.. +..++++++|.+-.+||+.+|..+..+.
T Consensus       233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~Lt  311 (481)
T KOG0300|consen  233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILT  311 (481)
T ss_pred             CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceecccc
Confidence                            00         11122322 367888999999887 8999999999999999999999999999


Q ss_pred             cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          466 EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||....+.++-+| +..++++.|.|.+.++
T Consensus       312 GHd~ELtHcstHp-tQrLVvTsSrDtTFRL  340 (481)
T KOG0300|consen  312 GHDSELTHCSTHP-TQRLVVTSSRDTTFRL  340 (481)
T ss_pred             CcchhccccccCC-cceEEEEeccCceeEe
Confidence            9999999999899 8899999999998875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.6e-12  Score=130.80  Aligned_cols=150  Identities=13%  Similarity=0.159  Sum_probs=113.9

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~  412 (495)
                      ..+++..+.|++|..|++-+....   .....++     +|.++|.+|.|+|.+++||+.+-||+|+|||+..+.  ..+
T Consensus       105 ~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lr-----gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  105 SGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLR-----GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             ecCCcEEEeecCceeEEEEecccc---chheeec-----ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence            345567788999999998876432   2234444     899999999999999999999999999999999871  111


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .+ ..+...+.....+..++|+|+ +..|+....|+.|++|+.........+..  |...+..+.|+| +|.|||+++.|
T Consensus       177 ~~-v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~  253 (933)
T KOG1274|consen  177 TG-VDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLD  253 (933)
T ss_pred             cc-CCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccC
Confidence            11 112222223455788999999 55666777799999999988777766654  445589999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      |.|.|
T Consensus       254 g~I~v  258 (933)
T KOG1274|consen  254 GQILV  258 (933)
T ss_pred             CcEEE
Confidence            98864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=4.3e-12  Score=122.91  Aligned_cols=114  Identities=12%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcc-----cCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRY-----SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~-----~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      .....+.+++.|+++++|.+.+.     ..++++++++     +|.++|.++.+.+++..+++||.|++|+.|++.....
T Consensus       304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-----aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-----AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-----cccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence            34556789999999999998321     3356788888     9999999999999999999999999999998774311


Q ss_pred             CCCCc---CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          411 EPADV---HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       411 ~~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .....   .-.....+|.+.+|.+++|+. ...|++++.||+|++|+.
T Consensus       379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  379 PDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             cccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeecc
Confidence            11111   111234578899999999988 778999999999999964

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.38  E-value=1.5e-12  Score=116.32  Aligned_cols=148  Identities=20%  Similarity=0.351  Sum_probs=116.9

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +...+.+.+-|.+..||++..-    ....++ ..++.|...|.+|+|...+ +.|++.|.||+||+||++..     .+
T Consensus       162 dp~~igtSSiDTTCTiWdie~~----~~~~vk-TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-----eH  231 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETG----VSGTVK-TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-----EH  231 (364)
T ss_pred             CcceeEeecccCeEEEEEEeec----ccccee-eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-----cc
Confidence            4455667788889999998532    011122 3566899999999999854 48999999999999999986     33


Q ss_pred             CCCeeecCC-CCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          416 HCPVVEMPT-RSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       416 ~~~~~~~~~-~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .+.+..-.. ..++..++|++.+.+++|+-..|+ .|.|.|++. +.++..+.+|.+.|++++|.|..+.+|+|+++|..
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            333333333 567899999999889999877666 599999997 67899999999999999999988899999999987


Q ss_pred             Ee
Q 048199          493 VL  494 (495)
Q Consensus       493 v~  494 (495)
                      +.
T Consensus       312 al  313 (364)
T KOG0290|consen  312 AL  313 (364)
T ss_pred             EE
Confidence            64

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.37  E-value=1.6e-13  Score=87.68  Aligned_cols=38  Identities=45%  Similarity=1.206  Sum_probs=34.2

Q ss_pred             cccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCC
Q 048199           55 CPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~C   92 (495)
                      |+||++.+.+| +.++|||+||+.||.+|++...+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 588999999999999999998899998

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.36  E-value=4.8e-12  Score=111.47  Aligned_cols=120  Identities=21%  Similarity=0.333  Sum_probs=103.3

Q ss_pred             hcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcC
Q 048199          356 TRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK  435 (495)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p  435 (495)
                      ..|..++++.+++     .|.....+|.|+|+|++||+|+.|-.+.+||++..       .+......+.-+|..+.|+-
T Consensus       174 LsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------iC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  174 LSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------ICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             Eeccccccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHh-------hhheeeccccCceEEEEecc
Confidence            3456677777777     79999999999999999999999999999999986       23333334666899999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       436 ~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      | |.+||+|+.|..|-|=++.+|..+..+. ++++.+.|+|+| ...+||-+++|
T Consensus       242 d-g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  242 D-GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD  293 (313)
T ss_pred             C-cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence            9 9999999999999999999999998887 788999999999 88888877765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.36  E-value=1.4e-12  Score=123.21  Aligned_cols=150  Identities=15%  Similarity=0.184  Sum_probs=108.0

Q ss_pred             CcccchhhHHhhhhhhh-cccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-CCCc-
Q 048199          340 GYNAGLADFQSVLTTFT-RYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-PADV-  415 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~-  415 (495)
                      .++.|..-++|.+|++. .-.....+.-+.     .|.++|.+|.|+| +-..+++.|.||+|++-|+...... +... 
T Consensus       202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-----~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~  276 (498)
T KOG4328|consen  202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-----PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD  276 (498)
T ss_pred             EEEEccCCCcEEEEecCCCCCccCceEEec-----cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence            35566666789999994 111112222222     7999999999999 5568899999999999999865110 0000 


Q ss_pred             --------------CCCe----------------------eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          416 --------------HCPV----------------------VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       416 --------------~~~~----------------------~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                                    ...+                      ...-|..+|++++++|....+|+|++.|++.+|||++...
T Consensus       277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~  356 (498)
T KOG4328|consen  277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR  356 (498)
T ss_pred             ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence                          0000                      0112456899999999989999999999999999998643


Q ss_pred             c----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 S----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 ~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .    +-....|...|.++.|+| .+..|+|.+.|..|+|
T Consensus       357 ~K~sp~lst~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  357 GKASPFLSTLPHRRSVNSAYFSP-SGGTLLTTCQDNEIRV  395 (498)
T ss_pred             CCCCcceecccccceeeeeEEcC-CCCceEeeccCCceEE
Confidence            2    333456999999999999 5555999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=6.7e-12  Score=113.46  Aligned_cols=121  Identities=20%  Similarity=0.271  Sum_probs=83.7

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC---------CCCcCCCe----------ee-----------
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE---------PADVHCPV----------VE-----------  421 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~---------~~~~~~~~----------~~-----------  421 (495)
                      +.+|.+.|++++|+.||++|+|++.|++|+||+++...+.         ..++.+.+          ..           
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk  161 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK  161 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence            3499999999999999999999999999999998753110         00000000          00           


Q ss_pred             ----------------------cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce------------------
Q 048199          422 ----------------------MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV------------------  461 (495)
Q Consensus       422 ----------------------~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~------------------  461 (495)
                                            ..|.-.+..+..... +.+|+|++.|..|.+||.+ |+.+                  
T Consensus       162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             eeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence                                  001112222333222 6678888888888888765 4322                  


Q ss_pred             --------------------------------eecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          462 --------------------------------MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       462 --------------------------------~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                                                      ..+.||...|..++|++ +...++|.|.||++||
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRI  304 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEE
Confidence                                            23468999999999999 9999999999999885

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.3e-13  Score=112.62  Aligned_cols=55  Identities=36%  Similarity=0.863  Sum_probs=48.7

Q ss_pred             Cccccccccchhhh--ccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199           51 KDMLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        51 ~~l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      .-..||||++-+.+  |+.++|||+||+.||...+....+||+|++.++.+++.+.|
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            34789999999986  67899999999999999999999999999999888776654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.35  E-value=7.1e-13  Score=126.24  Aligned_cols=145  Identities=16%  Similarity=0.231  Sum_probs=116.1

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..+.++..+..|+...++.|||+..- .......+.     ......++++.+||.++.+++..||.|.|||+.+.    
T Consensus       472 kL~pdgrtLivGGeastlsiWDLAap-Tprikaelt-----ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----  541 (705)
T KOG0639|consen  472 KLLPDGRTLIVGGEASTLSIWDLAAP-TPRIKAELT-----SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----  541 (705)
T ss_pred             EecCCCceEEeccccceeeeeeccCC-CcchhhhcC-----CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----
Confidence            44556677888888889999998521 111111121     33467889999999999999999999999999986    


Q ss_pred             CCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          413 ADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       413 ~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                          ..+..+ +|.+.+.||.+++| |..|.||+.|.+|+-||++.++.+.... ....|.++.++| ++.+|+.|-.++
T Consensus       542 ----~~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens  614 (705)
T KOG0639|consen  542 ----TLVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENS  614 (705)
T ss_pred             ----eeeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccC
Confidence                455554 78899999999999 9999999999999999999988765543 367899999999 999999998887


Q ss_pred             cEe
Q 048199          492 KVL  494 (495)
Q Consensus       492 ~v~  494 (495)
                      .|-
T Consensus       615 ~ve  617 (705)
T KOG0639|consen  615 NVE  617 (705)
T ss_pred             cEE
Confidence            764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.3e-11  Score=106.40  Aligned_cols=147  Identities=14%  Similarity=0.247  Sum_probs=115.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeecccccc---CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFH---SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .-++-.+++|+.|.+++.||+.-..   .+.++.+ ++.+   ..+.|.+++++|.|++|++|-.|.+..+||++.+   
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~---~v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~---  263 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNS---CVNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG---  263 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccc---eeeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC---
Confidence            3456678899999999999985322   2333321 1111   2478999999999999999999999999999987   


Q ss_pred             CCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          412 PADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       412 ~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                           .++.. ..|...|.++.|+|. ..+++++++|..|++-|+.-    .-++.....|.+.+-.+.|+| ..--++|
T Consensus       264 -----r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~-~d~sfis  336 (350)
T KOG0641|consen  264 -----RMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP-QDFSFIS  336 (350)
T ss_pred             -----ceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC-ccceeee
Confidence                 34443 468889999999999 89999999999999999863    124455567999999999999 7677889


Q ss_pred             eeCCCcEeC
Q 048199          487 GSDDCKVLY  495 (495)
Q Consensus       487 ~s~D~~v~l  495 (495)
                      .|.|.++.+
T Consensus       337 ssadkt~tl  345 (350)
T KOG0641|consen  337 SSADKTATL  345 (350)
T ss_pred             ccCcceEEE
Confidence            999998754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.32  E-value=2.5e-12  Score=118.13  Aligned_cols=139  Identities=19%  Similarity=0.303  Sum_probs=110.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      .+.++++..|.++.|+|...-.... .+.+++          -..|+|+|.+-.|++|+.|..+..||++..       .
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR----------TN~IswnPeafnF~~a~ED~nlY~~DmR~l-------~  262 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVILTMR----------TNTICWNPEAFNFVAANEDHNLYTYDMRNL-------S  262 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceeeeecc----------ccceecCccccceeeccccccceehhhhhh-------c
Confidence            3556777788999999985433222 333344          458899998889999999999999999986       3


Q ss_pred             CCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .|+. ..+|.+.|..++|+|. |.-|+|||+|.+|+||.++.+.....+..- -..|.+|.|+- |..+++|||+|+.|+
T Consensus       263 ~p~~v~~dhvsAV~dVdfspt-G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvR  340 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPT-GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVR  340 (433)
T ss_pred             ccchhhcccceeEEEeccCCC-cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCccee
Confidence            3333 3468889999999999 999999999999999999977765555322 24689999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       341 l  341 (433)
T KOG0268|consen  341 L  341 (433)
T ss_pred             e
Confidence            6

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.2e-11  Score=110.38  Aligned_cols=160  Identities=16%  Similarity=0.163  Sum_probs=118.3

Q ss_pred             hccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199          321 MANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR  399 (495)
Q Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~  399 (495)
                      ..+.+|...++.... +-+..+.+++.|.++++||+.. .+...+..+         ..-...+|+|.|-+||.+.....
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~~---------~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLNL---------SGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEec---------CCCcceeECCCCcEEEEecCCCe
Confidence            345666665555443 4558899999999999999852 222222222         22335689999999999998889


Q ss_pred             EEEEEccccc-cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcE---EEEE
Q 048199          400 IKVFDFASVV-NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA---WSVD  475 (495)
Q Consensus       400 i~vwd~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~  475 (495)
                      |++||++... ..+.   ............+.+.|+|| |.+|+-+...+.+.+.|.-+|....+|.++...-   -+.+
T Consensus       164 IkLyD~Rs~dkgPF~---tf~i~~~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFT---TFSITDNDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             EEEEEecccCCCCce---eEccCCCCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            9999999751 1111   11111134567899999999 8888888899999999999999999998875432   5678


Q ss_pred             eecCCCCeEEEeeCCCcEeC
Q 048199          476 FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+| ++.++++|++||+|.+
T Consensus       240 ftP-ds~Fvl~gs~dg~i~v  258 (311)
T KOG1446|consen  240 FTP-DSKFVLSGSDDGTIHV  258 (311)
T ss_pred             ECC-CCcEEEEecCCCcEEE
Confidence            999 9999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.30  E-value=4.8e-12  Score=119.66  Aligned_cols=141  Identities=16%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|..|..+.||+..   ....+..+.     +|.+.|.+++|-..-+.+++++.|++|++|+++..       
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~---t~ehv~~~~-----ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-------  276 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCD---TLEHVKVFK-----GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-------  276 (479)
T ss_pred             CCCcEEEecCCCceEEEecCc---ccchhhccc-----ccccceeeeeeecCccceeeeecCCceEEEehhHh-------
Confidence            466778899999999999984   334444444     99999999999987888999999999999999986       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......++|.+.|.++.-... +..+-.|+.|+++++|++. -...-.|.+|.+.+-+++|-  |..+++|||+||.|.|
T Consensus       277 s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             HHHHHHhCCccceeeechhcc-cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence            344456789999999987766 6677777799999999994 44556788999999999997  5689999999999864

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.2e-12  Score=113.89  Aligned_cols=57  Identities=28%  Similarity=0.786  Sum_probs=51.2

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHH
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFL  106 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~  106 (495)
                      ...+.|.||++.-+|||++.|||.||+.||.+|+...   ..||+|+..++.+.++|.+.
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            4567899999999999999999999999999999865   47999999999988888764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=8.4e-12  Score=120.91  Aligned_cols=130  Identities=13%  Similarity=0.240  Sum_probs=103.4

Q ss_pred             EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEE
Q 048199          363 VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRI  441 (495)
Q Consensus       363 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l  441 (495)
                      ..|.++. ++..|.+.|+.+.|+|....|++++.|+++++|++......-.....++. ..+|.++|.|+++.+. +.++
T Consensus       282 k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~  359 (577)
T KOG0642|consen  282 KKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHC  359 (577)
T ss_pred             eecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEE
Confidence            3455554 45579999999999999999999999999999999442111111123333 4479999999999998 9999


Q ss_pred             EEecCCCcEEEEeCCC----------CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          442 ASSDYEGIVTVWDVTT----------QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       442 ~sg~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++|+-||+|+.|++..          ......|.||++.||.+++++ ..+.|+++|.||+|++
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~  422 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRL  422 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEe
Confidence            9999999999995531          134567889999999999999 8889999999999984

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.28  E-value=2.2e-11  Score=115.27  Aligned_cols=120  Identities=21%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC---CCC------cCCCeee--cCCCCCeEEEEEcCCCCCEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE---PAD------VHCPVVE--MPTRSKLSCLSWNKFSKNRIA  442 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~---~~~------~~~~~~~--~~~~~~i~~~~~~p~~~~~l~  442 (495)
                      .|.-.|.+++++|++.+.++++.|++|.-|++.+++..   ...      +..+...  ..|...+.+++.++| +.+|+
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-gkyla  218 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLA  218 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-CcEEE
Confidence            68889999999999999999999999999999988432   111      1112211  267778999999999 99999


Q ss_pred             EecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       443 sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|+.|..|.|||..+++.++.|.+|.+.|.+++|-. ...-|+++|.|++|+|
T Consensus       219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkv  270 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKV  270 (479)
T ss_pred             ecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEE
Confidence            999999999999999999999999999999999998 8889999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.28  E-value=1.2e-11  Score=122.50  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=100.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...+++++++|...++++++.|+.|+|||+.+++..    +.......|.+.+..+...|. +.||++.+.|.++.++|.
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~----k~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV----KSFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEecccccee----eeecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEe
Confidence            357899999999999999999999999999998221    111222356677889999999 999999999999999999


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+|+++.+..||...|+.+.|.+ |.++|+|.+.||+|.|
T Consensus       671 ~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  671 VSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFV  709 (1080)
T ss_pred             ccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEE
Confidence            99999999999999999999999 9999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.6e-11  Score=107.28  Aligned_cols=110  Identities=11%  Similarity=0.244  Sum_probs=87.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ||...|.+|+.+|-+..|++++.|++||+||++..       .+....  +...-..++|.|. |.++|.|.....|++|
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------~cqg~l--~~~~~pi~AfDp~-GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------KCQGLL--NLSGRPIAAFDPE-GLIFALANGSELIKLY  167 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-------CCceEE--ecCCCcceeECCC-CcEEEEecCCCeEEEE
Confidence            99999999999999999999999999999999975       232222  1222346899999 9999999988899999


Q ss_pred             eCCC--Ccceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTT--QQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~--~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |+++  ..+..+|.   +-....+.+.|+| ||++|+-+...+.++
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~  212 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIY  212 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEE
Confidence            9986  34555554   2356788999999 999888877777665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.27  E-value=2.6e-11  Score=110.19  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=98.0

Q ss_pred             CCCcEEEEEEcc---C-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          375 SANIVSSIEFDR---D-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       375 h~~~V~~l~~~p---~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      |....+.++|.-   + ..++|.||.-|.|+|.|+..+       .......+|...|+.+.|+|+..++++++|.|.+|
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence            556666777754   2 348888999999999999987       34455668999999999999988999999999999


Q ss_pred             EEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          451 TVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++||+++..++..|.   ||.+.|.+++|+. +|.+|+|++.|..+++
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKL  207 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEE
Confidence            999999999998875   6999999999999 9999999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=6e-11  Score=106.97  Aligned_cols=119  Identities=15%  Similarity=0.242  Sum_probs=95.3

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE-cCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW-NKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~~l~sg~~dg~v~i  452 (495)
                      +|.+-|.++.|++.|+.++||+.|++|+|||.......   .........|.+.|+.+.| ||.-|..+|++++|+++.|
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            78999999999999999999999999999998654111   1222333468899999999 6666899999999999999


Q ss_pred             EeCC--C----C---cceeecccccCcEEEEEeecC-CCCeEEEeeCCCcEeC
Q 048199          453 WDVT--T----Q---QSVMEYEEHEKRAWSVDFSRT-EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~--~----~---~~~~~~~~h~~~v~~v~~~~~-~g~~l~s~s~D~~v~l  495 (495)
                      |.=.  +    +   ....++......|+.|.|.|. -|-.||+++.||.|||
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI  140 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI  140 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence            9741  1    1   235567777889999999983 3568999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=2.3e-11  Score=111.17  Aligned_cols=140  Identities=20%  Similarity=0.318  Sum_probs=101.4

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ++.+..-+++++++...   ...+..++     +|...+..+.|..  ..+.+.+|+.||+||+||++....      .+
T Consensus        43 vav~lSngsv~lyd~~t---g~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e------~a  108 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGT---GQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE------SA  108 (376)
T ss_pred             EEEEecCCeEEEEeccc---hhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh------hh
Confidence            33444444778887642   22233333     7778888888876  567899999999999999998621      22


Q ss_pred             eeecC-CC-CCeEEEEEcCCCCCEEEEec----CCCcEEEEeCCCCcc-eeec-ccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          419 VVEMP-TR-SKLSCLSWNKFSKNRIASSD----YEGIVTVWDVTTQQS-VMEY-EEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       419 ~~~~~-~~-~~i~~~~~~p~~~~~l~sg~----~dg~v~iwd~~~~~~-~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      +..+. +. .+..+++.+-. +++|++|.    .|..|.+||+|.... +..+ ..|.+.|++|.|+|.++.+|+|||-|
T Consensus       109 ~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  109 RISWTQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             heeccCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence            33332 22 35677777655 77888886    466799999997654 5544 57999999999999999999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      |.|.|
T Consensus       188 GLvnl  192 (376)
T KOG1188|consen  188 GLVNL  192 (376)
T ss_pred             ceEEe
Confidence            98864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.25  E-value=1.6e-11  Score=118.20  Aligned_cols=95  Identities=21%  Similarity=0.363  Sum_probs=83.9

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .+.|..++|+|||.+||+.|.|+.+||||+.+.       .-.-......+.+.|++|+|| +.+|++|+.|-.|.||.+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-------eLlg~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-------ELLGVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHH-------HHHHHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEe
Confidence            468999999999999999999999999999986       111122245678999999999 999999999999999999


Q ss_pred             CCCcceeecccccCcEEEEEeec
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      ..++.++.-+||..||..|+|.|
T Consensus       362 ~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  362 EERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEeccccccceeeEeecc
Confidence            99999999999999999999975

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.25  E-value=2.2e-12  Score=87.51  Aligned_cols=47  Identities=36%  Similarity=0.879  Sum_probs=41.5

Q ss_pred             CccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      |+..|+||++.+.+++.+||||. ||..|+.+|+.....||+||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35689999999999999999999 999999999998899999999874

...

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=6.8e-11  Score=106.74  Aligned_cols=108  Identities=16%  Similarity=0.280  Sum_probs=93.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...|+++.|+|.++.|+.+++||++++||+...        .....+.|..++.+++|.++  ..+++|+.||.|+.+|+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccCC--ceEEEeccCceEEEEEe
Confidence            577999999999998889999999999999886        44456678899999999975  58899999999999999


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .++.. ..+..|...|.+|.+++ ....+++||+|++|++
T Consensus        83 n~~~~-~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~  120 (323)
T KOG1036|consen   83 NTGNE-DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKF  120 (323)
T ss_pred             cCCcc-eeeccCCCceEEEEeec-cCCeEEEcccCccEEE
Confidence            87654 44556999999999998 6678999999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.24  E-value=1e-11  Score=121.57  Aligned_cols=145  Identities=15%  Similarity=0.156  Sum_probs=107.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +...++.+.+|..|+||.+...+-.+.. .-..+.+..|...|++|.||| -.++|++++.|.+|++||+.++       
T Consensus       639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-------  710 (1012)
T KOG1445|consen  639 DDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-------  710 (1012)
T ss_pred             ChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-------
Confidence            3466788999999999998643222211 112234448999999999999 5779999999999999999997       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccc-cCcEEEEEeecCCCCeEEEeeCCC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEH-EKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h-~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      .......+|.+.|..++|+|+ |..+++-+.||+|+||.-+++. .++.-.+- ..+--.|-|.- +|.+++..+.|.
T Consensus       711 ~~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk  786 (1012)
T KOG1445|consen  711 KLYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK  786 (1012)
T ss_pred             hhhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence            333455689999999999999 9999999999999999988753 33333222 12223455666 888888887775

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.23  E-value=1.3e-11  Score=108.86  Aligned_cols=147  Identities=12%  Similarity=0.147  Sum_probs=113.8

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeecc-----ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHG-----DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +..|-.++.+.+||+..-++   +..++..     ....|...|.++.|.+....=++|+.+..+..|+++.....+.  
T Consensus       168 llaGyEsghvv~wd~S~~~~---~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq--  242 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDK---IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ--  242 (323)
T ss_pred             EEEeccCCeEEEEEccCCce---eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc--
Confidence            45677778999999864321   2222211     1125899999999998766678999999999999987522211  


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       -.......+..+..+.+-|| +.++||+++|+.|+||..+++.+++.+.-|...|++++|+| +..++|++|.|++|-+
T Consensus       243 -~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  243 -IRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISL  319 (323)
T ss_pred             -ccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEe
Confidence             01111123446889999999 99999999999999999999999999999999999999999 8899999999999854

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.23  E-value=1.9e-12  Score=85.37  Aligned_cols=40  Identities=35%  Similarity=0.937  Sum_probs=35.5

Q ss_pred             ccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCC
Q 048199           54 LCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCG   93 (495)
Q Consensus        54 ~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr   93 (495)
                      .|+||++.|.+   ++.++|||.||..||.+|+....+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            59999999963   46889999999999999999999999997

...

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.22  E-value=5.2e-11  Score=117.98  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=97.7

Q ss_pred             ccccCCCcEEEEEEccCCCEEEEEeCCCc-----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec
Q 048199          371 DIFHSANIVSSIEFDRDDQLFATAGVSRR-----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~  445 (495)
                      +++||...|++++.+|+++++||++....     |++|+..+.       ........|.-.|+.++|+|| +.+|++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-------~~~~~L~~HsLTVT~l~FSpd-g~~LLsvs  591 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-------LQVQELEGHSLTVTRLAFSPD-GRYLLSVS  591 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-------hhhheecccceEEEEEEECCC-CcEEEEee
Confidence            56699999999999999999999986443     999999886       122234467778999999999 99999999


Q ss_pred             CCCcEEEEeCCCC----cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          446 YEGIVTVWDVTTQ----QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       446 ~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|.++.+|.....    ......+.|+..||+.+|+| ++.+++|+|.|.+|++
T Consensus       592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKV  644 (764)
T ss_pred             cCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEE
Confidence            9999999987532    22444778999999999999 9999999999999985

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.21  E-value=4.3e-12  Score=112.56  Aligned_cols=70  Identities=29%  Similarity=0.546  Sum_probs=62.5

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHh
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTS  115 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~  115 (495)
                      +..++..+.|-||-+.|.-|+.++|||+||.-||.+++..++.||+||.+....-++.++.+..+++.+.
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            4566777899999999999999999999999999999999999999999988777888888887777664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.4e-11  Score=115.47  Aligned_cols=167  Identities=13%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             ccCCCCcccccc-ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCC
Q 048199          322 ANQPHTKQESDK-NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSR  398 (495)
Q Consensus       322 ~~~~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~  398 (495)
                      .+.+|.+.++.. +..+++.+++|++|..+.||+..   ..+.+..+.+    ||+..|.++.|-|  +..+++||+.|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~---~~KllhsI~T----gHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF---EYKLLHSIST----GHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecch---hcceeeeeec----ccccceeEEeeeccCCCeEEEeccCcc
Confidence            345677766664 45688999999999999999985   4466888887    8999999999999  566899999999


Q ss_pred             cEEEEEccccccCCCC--cCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-c---------eeecc
Q 048199          399 RIKVFDFASVVNEPAD--VHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-S---------VMEYE  465 (495)
Q Consensus       399 ~i~vwd~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~---------~~~~~  465 (495)
                      .|++||+......-.+  ...+...+ .|...|-.++--|++.+.|.+++.||+|+-+|++... +         +..+.
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            9999999863111100  11122222 4667788888889867999999999999999998521 1         11122


Q ss_pred             cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          466 EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..--...++.++|.++++|+.|+.|-.++|
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarL  227 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARL  227 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhh
Confidence            223346788999989999999998876553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=5.2e-11  Score=114.93  Aligned_cols=118  Identities=14%  Similarity=0.266  Sum_probs=99.1

Q ss_pred             ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCc
Q 048199          371 DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGI  449 (495)
Q Consensus       371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~  449 (495)
                      ++.||++.|.++.|+.+|.+|++||.|-.+.|||.-..+      ..-....+|...|.++.|-|. +..+++||..|..
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            455999999999999999999999999999999988541      112344578899999999987 4568899999999


Q ss_pred             EEEEeCCC----------CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          450 VTVWDVTT----------QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       450 v~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |++||+..          ......+..|..+|..++-.|.++..+.++|.||+|+
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir  173 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR  173 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence            99999974          2345667789999999999995558999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.19  E-value=5.9e-11  Score=113.25  Aligned_cols=139  Identities=16%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      ..+|+....|+|||+.+.   .....++     +|++.|+++.++-.+.+||+++..|-|.|..+.++        ....
T Consensus        94 ~~sgG~~~~Vkiwdl~~k---l~hr~lk-----dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~--------~~tt  157 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAK---LIHRFLK-----DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK--------QKTT  157 (673)
T ss_pred             eeccCcCceeeehhhHHH---HHhhhcc-----CCcceeEEEEecCCcceeEEeccCCcEEEEecccC--------cccc
Confidence            356777779999999631   2233334     89999999999999999999999999999999987        2223


Q ss_pred             ecCCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          421 EMPTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       421 ~~~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+.+.  ..+.-+.|+|....+|.+++++|.|.+||+....+...+ ..|..+...|+|+|.+..+|+|.+.|..|.+
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            33333  346789999997788999999999999999877776554 5699999999999999999999999998864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=7.4e-12  Score=112.15  Aligned_cols=51  Identities=27%  Similarity=0.785  Sum_probs=46.8

Q ss_pred             CccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCC
Q 048199           51 KDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQL  101 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l  101 (495)
                      ....|.||++...+|-.+||||.||..||..|......||.||+++.+.++
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            347899999999999999999999999999999999999999999987554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=1.9e-11  Score=127.52  Aligned_cols=142  Identities=20%  Similarity=0.334  Sum_probs=109.6

Q ss_pred             cccchhhHHhhhhhhhcccC---ceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          341 YNAGLADFQSVLTTFTRYSR---LRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++.|.+|+.|.+|+......   ...+.+..     .|++.|..+.|++ .+++|++|+.||.|.|||+......+.   
T Consensus        83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~-----~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~---  154 (1049)
T KOG0307|consen   83 IAGGLEDGNIVLYDPASIIANASEEVLATKS-----KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT---  154 (1049)
T ss_pred             eeccccCCceEEecchhhccCcchHHHhhhc-----ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC---
Confidence            56788999999999865311   12222222     6999999999999 456999999999999999998522211   


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC--cEEEEEeecCCCCeEEEeeCCCc
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                       + ......+.|.+++|+....++|++|+.+|.+.|||++..+.+-.+..|..  .+..|+|+|.+-+.|+++++|..
T Consensus       155 -~-~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~  230 (1049)
T KOG0307|consen  155 -P-GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS  230 (1049)
T ss_pred             -C-CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence             1 12334567999999988788999999999999999998888888877654  47889999966778888887653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=1.2e-10  Score=105.38  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=98.3

Q ss_pred             Hhhhhhhh--cccC---ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC----CCe
Q 048199          349 QSVLTTFT--RYSR---LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH----CPV  419 (495)
Q Consensus       349 ~~~lw~~~--~~~~---~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~----~~~  419 (495)
                      -|++|.+.  +-..   ...+..++     ||.+.|.+++|+|+...++|.|.||+|||||++-.+..-.+..    .+.
T Consensus       251 DVkVwE~~f~kdG~fqev~rvf~Lk-----GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~  325 (420)
T KOG2096|consen  251 DVKVWEPIFTKDGTFQEVKRVFSLK-----GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA  325 (420)
T ss_pred             CceEEEEEeccCcchhhhhhhheec-----cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence            47788752  2122   22334444     9999999999999999999999999999999986522111100    011


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..-...+....+..+|. +..|+.+. ..++++|..++|.....+. .|...|.+++|++ +|.+++|++ |+.|++
T Consensus       326 pl~aag~~p~RL~lsP~-g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv  398 (420)
T KOG2096|consen  326 PLHAAGSEPVRLELSPS-GDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRV  398 (420)
T ss_pred             chhhcCCCceEEEeCCC-CcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeee
Confidence            11122334458999999 87777654 5689999999998877775 4899999999999 999999987 555543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=1.5e-10  Score=104.65  Aligned_cols=97  Identities=12%  Similarity=0.341  Sum_probs=82.9

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ  458 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~  458 (495)
                      -.++.|++.|.+||.|+.||.|-|||+.+.       .-.....+|-.+|.+++|++| |..|+|+|.|..|++||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCC
Confidence            678999999999999999999999999986       112233367889999999999 999999999999999999999


Q ss_pred             cceeecccccCcEEEEEeecCCCCeE
Q 048199          459 QSVMEYEEHEKRAWSVDFSRTEPSML  484 (495)
Q Consensus       459 ~~~~~~~~h~~~v~~v~~~~~~g~~l  484 (495)
                      .+++.+. ...+||.+.|+|.+-+..
T Consensus        98 s~l~rir-f~spv~~~q~hp~k~n~~  122 (405)
T KOG1273|consen   98 SPLKRIR-FDSPVWGAQWHPRKRNKC  122 (405)
T ss_pred             CceeEEE-ccCccceeeeccccCCeE
Confidence            9998886 577999999998544433

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.17  E-value=6.9e-12  Score=80.51  Aligned_cols=35  Identities=34%  Similarity=0.990  Sum_probs=22.9

Q ss_pred             cccccchhhh----ccccCCCCccchhhHHhhhcCC----CCCC
Q 048199           55 CPICMQIIKE----AFLTACGHSFCYMCIITHLRNK----SDCP   90 (495)
Q Consensus        55 C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~----~~CP   90 (495)
                      ||||.+ |.+    |+.|+|||+||+.||++++...    .+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 988    9999999999999999998843    4787

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=1.3e-10  Score=110.30  Aligned_cols=120  Identities=12%  Similarity=0.227  Sum_probs=97.8

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC-cCCCeeec-CCCCCeEEEEEcCC-CCCEEEEecCCCcE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD-VHCPVVEM-PTRSKLSCLSWNKF-SKNRIASSDYEGIV  450 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~~p~-~~~~l~sg~~dg~v  450 (495)
                      .|-..|+++.|+.||.+|+|||.||.|.+|++..-.....+ ...|...+ .|.-.|+.+...+. ....++|++.|.++
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~  200 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI  200 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence            69999999999999999999999999999998765333322 22344444 46667888876544 25689999999999


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++||+..|..+.++. ....+.+++..| .+..++.|+.+|.|.+
T Consensus       201 k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  201 KLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQ  243 (476)
T ss_pred             EEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEe
Confidence            999999999888876 466899999999 8899999999999863

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=4.3e-10  Score=101.58  Aligned_cols=154  Identities=12%  Similarity=0.151  Sum_probs=101.3

Q ss_pred             ccccCcccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEc-c-CCCEEEEEeCCCcEEEEEccccccCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFD-R-DDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p-~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..+.++++++.|.+++||++.. .+.......-+     .|.+.|+.+.|- | -|+.+|+++.|++++||.-.......
T Consensus        23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~   97 (361)
T KOG2445|consen   23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA   97 (361)
T ss_pred             ccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-----ecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc
Confidence            4567788999999999999632 22233333333     689999999995 5 69999999999999999874220000


Q ss_pred             CC--cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCC--------------------------------
Q 048199          413 AD--VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTT--------------------------------  457 (495)
Q Consensus       413 ~~--~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~--------------------------------  457 (495)
                      .+  ...........+.|+.+.|.|. -|..+++++.||+|+||+...                                
T Consensus        98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen   98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence            00  0011122234456777777765 255667777777777774211                                


Q ss_pred             -------------------------------C----cceeecccccCcEEEEEeecCCC---CeEEEeeCCCcEeC
Q 048199          458 -------------------------------Q----QSVMEYEEHEKRAWSVDFSRTEP---SMLVSGSDDCKVLY  495 (495)
Q Consensus       458 -------------------------------~----~~~~~~~~h~~~v~~v~~~~~~g---~~l~s~s~D~~v~l  495 (495)
                                                     +    ..+.++.+|+++|++++|.|.-|   .+||+++.|| |+|
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I  252 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI  252 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence                                           0    12344457889999999998433   3689999998 764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.17  E-value=1.6e-11  Score=123.66  Aligned_cols=111  Identities=20%  Similarity=0.302  Sum_probs=99.9

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +.||...|+|+.|+..|.++++|+.|..+|||...+.       .+.....+|.+.|+.++.+.. ...+++++.|..|+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR  257 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence            4489999999999999999999999999999998887       344455688899999998877 78999999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|-+..+.++..+.||++.|++++|+|     ..+.+.||++++
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~  296 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRI  296 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEe
Confidence            999999999999999999999999999     448889999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=2.8e-10  Score=102.86  Aligned_cols=142  Identities=15%  Similarity=0.131  Sum_probs=108.9

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      -.+.+.....+|.-|+.|+++|+.. +.   ...     +..|..+|++|.+.+....+++||.|++|++||.+..    
T Consensus        60 c~F~d~~~~~~G~~dg~vr~~Dln~-~~---~~~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----  126 (323)
T KOG1036|consen   60 CAFADESTIVTGGLDGQVRRYDLNT-GN---EDQ-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----  126 (323)
T ss_pred             eeccCCceEEEeccCceEEEEEecC-Cc---cee-----eccCCCceEEEEeeccCCeEEEcccCccEEEEecccc----
Confidence            3344556677888888888888742 11   111     1258999999999998889999999999999999974    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                          ..+..+....+|.++..+   ++.|+.|+.|..|.+||+++.....+...  -.-.+.+|++.| ++.-++.+|-|
T Consensus       127 ----~~~~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSie  198 (323)
T KOG1036|consen  127 ----VVVGTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIE  198 (323)
T ss_pred             ----ccccccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeec
Confidence                444555555689999988   77999999999999999998654433222  245789999999 88888999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      |.|.+
T Consensus       199 GRVav  203 (323)
T KOG1036|consen  199 GRVAV  203 (323)
T ss_pred             ceEEE
Confidence            99864

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.16  E-value=1.1e-11  Score=80.40  Aligned_cols=38  Identities=42%  Similarity=1.135  Sum_probs=35.4

Q ss_pred             cccccchhhhcc-ccCCCCccchhhHHhhhc--CCCCCCCC
Q 048199           55 CPICMQIIKEAF-LTACGHSFCYMCIITHLR--NKSDCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~--~~~~CP~C   92 (495)
                      |+||++.+.+|+ +++|||.||..||.+|+.  ....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999998  45689988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.15  E-value=1.9e-11  Score=109.83  Aligned_cols=48  Identities=35%  Similarity=0.841  Sum_probs=42.0

Q ss_pred             CCccccccccchhhhc--------cccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           50 DKDMLCPICMQIIKEA--------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~P--------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .++..|+||++.+.++        +.++|||.||..||.+|+....+||+||.++.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            4567899999988764        45689999999999999999899999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.15  E-value=9.5e-10  Score=98.35  Aligned_cols=101  Identities=15%  Similarity=0.394  Sum_probs=80.2

Q ss_pred             CCcEEEEEEccCCCEEEE--EeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcE
Q 048199          376 ANIVSSIEFDRDDQLFAT--AGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v  450 (495)
                      .+.|.+++|+|+|+.|+.  |..++.|.+||++.         .++..+. ...++.+.|+|+ |.+|+.|+.   .|.|
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~-~~~~n~i~wsP~-G~~l~~~g~~n~~G~l  127 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG-TQPRNTISWSPD-GRFLVLAGFGNLNGDL  127 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec-CCCceEEEECCC-CCEEEEEEccCCCcEE
Confidence            457999999999998654  44678999999973         2334443 456789999999 888888764   4679


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .+||+++...+..+. |. .+..++|+| +|.+|++++..
T Consensus       128 ~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~~~ta~t~  164 (194)
T PF08662_consen  128 EFWDVRKKKKISTFE-HS-DATDVEWSP-DGRYLATATTS  164 (194)
T ss_pred             EEEECCCCEEeeccc-cC-cEEEEEEcC-CCCEEEEEEec
Confidence            999999888888775 33 478999999 99999998753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=2.9e-10  Score=112.56  Aligned_cols=117  Identities=16%  Similarity=0.220  Sum_probs=94.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      ..++.|.+++|+|++..+++|+.||.|++||...+.... -+...+....  ...-||++.|-.+  ..|++|+.-|+|+
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~  228 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVT  228 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEeec--CcEEEecCCceEE
Confidence            347899999999999999999999999999999871100 0000000111  1224899998855  5899999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +||...|..++++..|...|.+++.++ ++.++++++.|+.|-
T Consensus       229 FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  229 FWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKII  270 (691)
T ss_pred             EEcccCcchhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceE
Confidence            999999999999999999999999998 889999999999863

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.1e-10  Score=111.89  Aligned_cols=72  Identities=31%  Similarity=0.760  Sum_probs=62.1

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHh
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR  117 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~  117 (495)
                      ..+..+.+++.|+||++.|++|++++|||+||+.||..++.....||.||. ... .+.+|+.+.++++.+...
T Consensus         5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~   76 (386)
T KOG2177|consen    5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL   76 (386)
T ss_pred             hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence            344667889999999999999999999999999999999985568999996 332 788999999999988754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.13  E-value=1.1e-10  Score=114.72  Aligned_cols=147  Identities=12%  Similarity=0.180  Sum_probs=105.2

Q ss_pred             CcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      .++.+.+|+.|.+++..++. ++ .-..+  ...+.|...|.++.|-|....|++++.|.++++||+...     .+...
T Consensus        66 iLavadE~G~i~l~dt~~~~-fr~ee~~l--k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-----~l~G~  137 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIV-FRLEERQL--KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-----RLVGG  137 (720)
T ss_pred             eEEEecCCCceeeecchhhh-cchhhhhh--cccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-----eeecc
Confidence            35667777888888865432 11 01111  123469999999999997679999999999999999986     12222


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--------------------cee-------ecccccCcE
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--------------------SVM-------EYEEHEKRA  471 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--------------------~~~-------~~~~h~~~v  471 (495)
                      ...++|.+.+-+++|.|.+...|++|+.||.|.|||++-..                    +..       .-..|...|
T Consensus       138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence            24678999999999999999999999999999999986321                    000       111233334


Q ss_pred             EE---EEeecCCCCeEEEeeC-CCcEeC
Q 048199          472 WS---VDFSRTEPSMLVSGSD-DCKVLY  495 (495)
Q Consensus       472 ~~---v~~~~~~g~~l~s~s~-D~~v~l  495 (495)
                      .+   +-+.. |..+|||+|. |+.|||
T Consensus       218 ~ssvTvv~fk-De~tlaSaga~D~~iKV  244 (720)
T KOG0321|consen  218 FSSVTVVLFK-DESTLASAGAADSTIKV  244 (720)
T ss_pred             eeeeEEEEEe-ccceeeeccCCCcceEE
Confidence            43   44444 7789999998 999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.12  E-value=1.8e-10  Score=116.44  Aligned_cols=114  Identities=21%  Similarity=0.273  Sum_probs=101.9

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      -..|.++|++++.+..++.+++++.+|.+++||+...        .......-...+.++.+|.. ...++.+..|-.|.
T Consensus       489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k--------~l~~~l~l~~~~~~iv~hr~-s~l~a~~~ddf~I~  559 (910)
T KOG1539|consen  489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK--------VLKKSLRLGSSITGIVYHRV-SDLLAIALDDFSIR  559 (910)
T ss_pred             CccccCceeEEEecCCCceEEEccCcceEEEEecCCc--------ceeeeeccCCCcceeeeeeh-hhhhhhhcCceeEE
Confidence            3469999999999999999999999999999999986        34444445566788888888 77899999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++|+-+.+.++.|.||.+.|++++||| ||++|++++.|++||+
T Consensus       560 vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  560 VVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT  602 (910)
T ss_pred             EEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence            999999999999999999999999999 9999999999999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.7e-10  Score=108.45  Aligned_cols=149  Identities=17%  Similarity=0.153  Sum_probs=112.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~  412 (495)
                      ..+++.+.+|..|+++++|++.+.   ..+..     ...|.+.|.++.|+|||++|++-+.| ..+||+++++...  .
T Consensus       153 ~~~gs~latgg~dg~lRv~~~Ps~---~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  153 NGDGSKLATGGTDGTLRVWEWPSM---LTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             cCCCCEeeeccccceEEEEecCcc---hhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            345678899999999999996432   11222     22688999999999999999999999 9999999887110  0


Q ss_pred             C---------------CcCCCe-------------ee-----c------------CCCCCeEEEEEcCCCCCEEEEecCC
Q 048199          413 A---------------DVHCPV-------------VE-----M------------PTRSKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       413 ~---------------~~~~~~-------------~~-----~------------~~~~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      .               ....+.             ..     .            .....|++++.+++ |.+++-|+.|
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~d  302 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMD  302 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC-CcEEEEeccC
Confidence            0               000000             00     0            01236889999999 9999999999


Q ss_pred             CcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          448 GIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |.|-|++..+.+.++-+ +.|...|+.|.|+| +.+++++.|.|....
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAA  349 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCcee
Confidence            99999999988877665 46999999999999 989999888887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.1e-10  Score=122.03  Aligned_cols=143  Identities=17%  Similarity=0.253  Sum_probs=115.4

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCC---cEEEEEccccccCCCCc
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSR---RIKVFDFASVVNEPADV  415 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~---~i~vwd~~~~~~~~~~~  415 (495)
                      .+++|+.++.+.|||+.+.   +++..+...   +....+..|+|||+.. .+++++.|.   .|.+||++..       
T Consensus       176 ILAS~s~sg~~~iWDlr~~---~pii~ls~~---~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-------  242 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLRKK---KPIIKLSDT---PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-------  242 (1049)
T ss_pred             HhhccCCCCCceeccccCC---CcccccccC---CCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-------
Confidence            3567777779999999543   344444431   2235688999999644 666776654   5999999876       


Q ss_pred             CCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          416 HCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       416 ~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ..++..+ +|..+|.++.|.+.+..+++|++.|+.|.+|+.++|+.+..+....+|+..+.|+|.++..++.++.||.|-
T Consensus       243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            4555555 788899999999987799999999999999999999999999998999999999998888999999999985


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       323 I  323 (1049)
T KOG0307|consen  323 I  323 (1049)
T ss_pred             e
Confidence            4

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.11  E-value=1.4e-10  Score=117.15  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=110.2

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+++++.++-++.|++..   ...+..++-      ...+..+..|....+|+.+..|-.|+++|+.+.        ..
T Consensus       506 ~~~vsa~~~Gilkfw~f~~---k~l~~~l~l------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~--------kv  568 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKK---KVLKKSLRL------GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR--------KV  568 (910)
T ss_pred             ceEEEccCcceEEEEecCC---cceeeeecc------CCCcceeeeeehhhhhhhhcCceeEEEEEchhh--------hh
Confidence            3367888888999999842   234444443      356778888998999999999999999999986        33


Q ss_pred             ee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          419 VV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       419 ~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      +. ..+|.++|+.++|+|| |..|++++.|++|++||+.++..+-.+. -..++.++.|+| +|.+|||+..|.
T Consensus       569 vR~f~gh~nritd~~FS~D-grWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~  639 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPD-GRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQ  639 (910)
T ss_pred             hHHhhccccceeeeEeCCC-CcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecC
Confidence            33 3479999999999999 9999999999999999999999887775 467889999999 999999999873

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.11  E-value=5.8e-10  Score=106.85  Aligned_cols=108  Identities=15%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|....+.++.||+.++|+|++.|+.+++|+ ..         .+.-...-..+..+++|||. + .++.|...|...+.
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~---------k~~wt~~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH---------KLEWTKIIEDPAECADFHPS-G-VVAVGTATGRWFVL  433 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc-CC---------ceeEEEEecCceeEeeccCc-c-eEEEeeccceEEEE
Confidence            6889999999999999999999999999999 22         34444445667899999999 7 99999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |..+...+..-.. ..+++.+.|+| +|.+||.||.|+.|+|
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYI  473 (626)
T ss_pred             ecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence            9998544444333 78999999999 9999999999999875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.11  E-value=1.7e-10  Score=110.17  Aligned_cols=126  Identities=15%  Similarity=0.234  Sum_probs=103.2

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+.++++++.|.+||....+   ++.....    .|..+..+|+|+| +..+|++.|.|+.|.+||+...        .
T Consensus       178 ~lL~~asd~G~VtlwDv~g~s---p~~~~~~----~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------~  242 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMS---PIFHASE----AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------A  242 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCC---cccchhh----hccCCcCcceecCCccceEEEecccceEEEeecccc--------c
Confidence            346678889999999986332   2222221    6999999999999 4558899999999999999975        3


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                      ....+....++..++|.++ |.+|+.|...|.|..||++. ..++..+..|...|++|+|-+ .+
T Consensus       243 s~~~l~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~  305 (673)
T KOG4378|consen  243 STDRLTYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP  305 (673)
T ss_pred             ccceeeecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence            3444556678999999999 99999999999999999985 578999999999999999988 54

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=7.8e-10  Score=113.11  Aligned_cols=142  Identities=13%  Similarity=0.145  Sum_probs=115.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ....+.+|+.+.+|.++.+........+..+        +-++++++|+-+|++++.||.|-.|++-+....       .
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf--------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-------s  129 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARF--------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-------S  129 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeee--------eccceEEEEecCCcEEEeecCceeEEEEecccc-------c
Confidence            3456889999999999988654433233333        456999999999999999999999999999886       3


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--------cCcEEEEEeecCCCCeEEEee
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--------EKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--------~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ......+|.++|.++.|+|. +++||+.+.||.|+|||+.++.+..++.+-        ...+..++|+| +|..|+..+
T Consensus       130 ~~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~  207 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPP  207 (933)
T ss_pred             hheeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeec
Confidence            44566689999999999999 999999999999999999988877666541        45677889999 877777778


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|++|++
T Consensus       208 ~d~~Vkv  214 (933)
T KOG1274|consen  208 VDNTVKV  214 (933)
T ss_pred             cCCeEEE
Confidence            8888874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.08  E-value=2.3e-10  Score=113.71  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=109.2

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-C----------CCEEEEEeCCCcEEEEEccccc
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-D----------DQLFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~----------~~~l~s~s~d~~i~vwd~~~~~  409 (495)
                      +.---+|.++.|||+....+......+     +.|...||++.--| +          ...|+|++.|++||+||+....
T Consensus       339 lscVYndhSlYvWDvrD~~kvgk~~s~-----lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct  413 (1080)
T KOG1408|consen  339 LSCVYNDHSLYVWDVRDVNKVGKCSSM-----LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT  413 (1080)
T ss_pred             EEEEEcCceEEEEeccccccccceeee-----eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence            333456778999998755544333333     36889999988666 1          2368999999999999998731


Q ss_pred             cC-------CC---------CcC--------------CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          410 NE-------PA---------DVH--------------CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       410 ~~-------~~---------~~~--------------~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                      +.       +.         +..              ..+.......++.+++.+|+ +.+|++|+.-|.++|||+...+
T Consensus       414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~  492 (1080)
T KOG1408|consen  414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELE  492 (1080)
T ss_pred             ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccCccCceEEEEehhhh
Confidence            10       00         000              00111123346899999999 9999999999999999999999


Q ss_pred             ceeecccccCcEEEEEeecC--CCCeEEEeeCCCcEeC
Q 048199          460 SVMEYEEHEKRAWSVDFSRT--EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 ~~~~~~~h~~~v~~v~~~~~--~g~~l~s~s~D~~v~l  495 (495)
                      ....+..|+..|.++.|+..  ...+|||+|.|+.|.|
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV  530 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV  530 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence            99999999999999999842  2468999999998864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.06  E-value=5.6e-10  Score=104.35  Aligned_cols=118  Identities=20%  Similarity=0.273  Sum_probs=93.4

Q ss_pred             CCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC--CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          376 ANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA--DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       376 ~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ..+|.++.|+++.. .|+|||.|..|++|-+......-.  .+........|...|+.+.|+|+ |.+|+||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence            46899999998655 999999999999999987622211  11111222367888999999999 999999999999999


Q ss_pred             EeCC--------C-----C---cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVT--------T-----Q---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~--------~-----~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |-..        +     .   .....+.+|...|+.++|+| ++.++++++.|..+++
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l  149 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRL  149 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEE
Confidence            9654        2     1   12456678999999999999 9999999999998764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.06  E-value=1.5e-09  Score=100.43  Aligned_cols=131  Identities=16%  Similarity=0.293  Sum_probs=101.0

Q ss_pred             hhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEccccccCCCCcCCCeeec-CCCC
Q 048199          350 SVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG--VSRRIKVFDFASVVNEPADVHCPVVEM-PTRS  426 (495)
Q Consensus       350 ~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~  426 (495)
                      +.|+|+.   ..+.+.++.+.  ..|...+.++++++.+.+++.-+  ..|.|.|||+.+-        .++..+ .|.+
T Consensus       108 IyIydI~---~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--------~~v~~I~aH~~  174 (391)
T KOG2110|consen  108 IYIYDIK---DMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--------QPVNTINAHKG  174 (391)
T ss_pred             EEEEecc---cceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--------eeeeEEEecCC
Confidence            5566663   22334444321  03455688888888888888643  3588999999986        444444 6899


Q ss_pred             CeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          427 KLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       427 ~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+-+++|+++ |.+|||++..|+ |+||++.+|+.+..|..-  .-.|++++|+| ++.+|++.|..++|+|
T Consensus       175 ~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  175 PLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHI  244 (391)
T ss_pred             ceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEE
Confidence            9999999999 999999999997 789999999999999743  34688999999 9999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.05  E-value=7.8e-10  Score=109.80  Aligned_cols=120  Identities=10%  Similarity=0.198  Sum_probs=92.8

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +.+|.-.|+.|+|+|||++|+++|.|+++.+|..........   .......|..-||.++|+|+ +.+|+|+|.|.+|+
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~---~fa~~k~HtRIIWdcsW~pd-e~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF---RFACLKAHTRIIWDCSWSPD-EKYFATASRDKKVK  643 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh---hhccccccceEEEEcccCcc-cceeEEecCCceEE
Confidence            448999999999999999999999999999999866522111   11123357778999999999 88999999999999


Q ss_pred             EEeCCCC--cceee--cccccCcEEEEEeecCCCC----eEEEeeCCCcEeC
Q 048199          452 VWDVTTQ--QSVME--YEEHEKRAWSVDFSRTEPS----MLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~--~~~~~--~~~h~~~v~~v~~~~~~g~----~l~s~s~D~~v~l  495 (495)
                      ||.....  ..+..  ...+...|+.++|.|.+..    .++.|-..|.|.|
T Consensus       644 VW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  644 VWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL  695 (764)
T ss_pred             EEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence            9998766  33332  3347889999999875443    6777777777653

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=99.05  E-value=1.2e-08  Score=94.35  Aligned_cols=51  Identities=27%  Similarity=0.684  Sum_probs=40.2

Q ss_pred             ccccccccch-hhhcc----ccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCc
Q 048199           52 DMLCPICMQI-IKEAF----LTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLY  102 (495)
Q Consensus        52 ~l~C~IC~~~-~~~Pv----~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~  102 (495)
                      +-.||||... +.+|-    +.+|||.||..|+.++|... ..||.|+.++....+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            4579999984 55663    22799999999999987554 5899999999876643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.03  E-value=1.3e-09  Score=103.43  Aligned_cols=119  Identities=19%  Similarity=0.284  Sum_probs=94.0

Q ss_pred             cCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          374 HSANIVSSIEFDRDD--QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      -|.+.|++++|||..  +++++|..-|.|-+||+.+.....   ........|..+|.++.|+|.+...|++.|+||+|+
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---CceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            468899999999954  488899999999999997432211   233445578889999999999889999999999999


Q ss_pred             EEeCCCCcc---------------------------------------------eeecccccCcEEEEEeecCCCCeEEE
Q 048199          452 VWDVTTQQS---------------------------------------------VMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       452 iwd~~~~~~---------------------------------------------~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      .-|++.+..                                             ...+.-|...|.+|+++|..+.+|||
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT  340 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence            998764310                                             11112377789999999999999999


Q ss_pred             eeCCCcEeC
Q 048199          487 GSDDCKVLY  495 (495)
Q Consensus       487 ~s~D~~v~l  495 (495)
                      +|.|++++|
T Consensus       341 ~s~D~T~kI  349 (498)
T KOG4328|consen  341 ASLDQTAKI  349 (498)
T ss_pred             cccCcceee
Confidence            999999875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=1.5e-09  Score=112.72  Aligned_cols=135  Identities=16%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE  421 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  421 (495)
                      .+|+--+.+.+|++. +++ .++ .     +.||.+.|.++.|+-+|.++++.|.|+++|+|++++...      -....
T Consensus       149 ~~gsv~~~iivW~~~-~dn-~p~-~-----l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------~~~~~  214 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPH-EDN-KPI-R-----LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------LGCTG  214 (967)
T ss_pred             EeccccccEEEEecc-ccC-Ccc-e-----ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc------cCccc
Confidence            345444588899885 222 112 2     239999999999999999999999999999999998711      12467


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          422 MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       422 ~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++|..++|.+.|+|.   .|+|++.|-+.++|+.. +..+..+.+|. +.||.++..+ +...++|++.|+.+++
T Consensus       215 fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  215 FGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKL  284 (967)
T ss_pred             ccccceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhh
Confidence            899999999999976   99999999999999865 67777999994 5799999998 8889999999999875

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.02  E-value=1.3e-10  Score=76.24  Aligned_cols=41  Identities=34%  Similarity=0.861  Sum_probs=35.7

Q ss_pred             ccccccchh---hhccccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199           54 LCPICMQII---KEAFLTACGHSFCYMCIITHLRNKSDCPCCGH   94 (495)
Q Consensus        54 ~C~IC~~~~---~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~   94 (495)
                      .|+||++.|   ..|++++|||+||..|+.++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            499999999   24678999999999999999855679999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=3.6e-09  Score=104.94  Aligned_cols=148  Identities=18%  Similarity=0.275  Sum_probs=108.7

Q ss_pred             ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      ...+..+.++.+.+.++++.-||+..   .+++..+.     ...+.||+++.+|.+..++.|+.||.+.+++...+.  
T Consensus        74 ~L~W~e~~RLFS~g~sg~i~EwDl~~---lk~~~~~d-----~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~--  143 (691)
T KOG2048|consen   74 SLAWAEGGRLFSSGLSGSITEWDLHT---LKQKYNID-----SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK--  143 (691)
T ss_pred             eEEEccCCeEEeecCCceEEEEeccc---CceeEEec-----CCCcceeEEEeCCccceEEeecCCceEEEEecCCce--
Confidence            34455566677777777888999843   33344444     346899999999999999999999977777766651  


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-------c-ccCcEEEEEeecCCCCe
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-------E-HEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-------~-h~~~v~~v~~~~~~g~~  483 (495)
                         .........-.+++.+++|+|+ +..|++|+.||.|++||+.++..+....       . ..--||+|.|-. + ..
T Consensus       144 ---I~~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~t  217 (691)
T KOG2048|consen  144 ---ITYKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-ST  217 (691)
T ss_pred             ---EEEEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-Cc
Confidence               1111122234578999999999 8889999999999999999987766221       1 234689999885 4 58


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      |++|..-|+|++
T Consensus       218 I~sgDS~G~V~F  229 (691)
T KOG2048|consen  218 IASGDSAGTVTF  229 (691)
T ss_pred             EEEecCCceEEE
Confidence            999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.00  E-value=3.8e-09  Score=101.55  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=94.1

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      +.++..|+.+.+|+...   ...+..+.     +| ..+.++.|+|++..+ ++++.++.|++||+.++        ...
T Consensus         4 ~~s~~~d~~v~~~d~~t---~~~~~~~~-----~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--------~~~   66 (300)
T TIGR03866         4 YVSNEKDNTISVIDTAT---LEVTRTFP-----VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--------EVI   66 (300)
T ss_pred             EEEecCCCEEEEEECCC---CceEEEEE-----CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC--------cEE
Confidence            45667788999999742   23344444     22 236789999999866 57778999999999876        222


Q ss_pred             eecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ..+.....+..+.|+|+ +..+ +++..|+.|++||+.++..+..+.. ...+.+++|+| +|.++++++.++
T Consensus        67 ~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~  136 (300)
T TIGR03866        67 GTLPSGPDPELFALHPN-GKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETT  136 (300)
T ss_pred             EeccCCCCccEEEECCC-CCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCC
Confidence            22222334567899999 6655 4556789999999998887777753 23468899999 999999888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.99  E-value=2.1e-09  Score=97.74  Aligned_cols=135  Identities=16%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCC
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      .++-|+...++.|+.-   ....++..+.     +|.+.|+-+.|+++|+.|++|+. |-.|-.||++..       ..+
T Consensus       222 ~~a~gsY~q~~giy~~---~~~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------~~p  286 (406)
T KOG2919|consen  222 TLAVGSYGQRVGIYND---DGRRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------RDP  286 (406)
T ss_pred             ceeeecccceeeeEec---CCCCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------cch
Confidence            4455555444444432   3445666666     89999999999999999999875 788999999986       334


Q ss_pred             eeecC-CC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          419 VVEMP-TR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       419 ~~~~~-~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      +..+. |.   ..-.-.+..|+ +.+|++|+.||.|++||.+. |..+..+..|...|+.|+++| -=.+++++|...
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssGqr  362 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSGQR  362 (406)
T ss_pred             hhhhhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccCce
Confidence            33331 21   22234556788 89999999999999999998 777888989999999999999 556788877654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.99  E-value=6e-10  Score=101.50  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             ccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeee----cCCCCCeEEEEEcCCCCCEEEEec
Q 048199          371 DIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE----MPTRSKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       371 ~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~l~sg~  445 (495)
                      .+.+|...|..|.|+|+ .++++++|.|.+||+|++++.        ..+..    .+|.+.|.+++|+++ +.+|+|++
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--------~Cv~VfGG~egHrdeVLSvD~~~~-gd~i~ScG  200 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--------VCVAVFGGVEGHRDEVLSVDFSLD-GDRIASCG  200 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--------eEEEEecccccccCcEEEEEEcCC-CCeeeccC
Confidence            44589999999999995 568999999999999999997        22222    368889999999999 88999999


Q ss_pred             CCCcEEEEeCCCCc------ce-------------------e---ecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          446 YEGIVTVWDVTTQQ------SV-------------------M---EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       446 ~dg~v~iwd~~~~~------~~-------------------~---~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .|.++++|++...+      +.                   .   +-.-|+..|-|+.|-   |.+++|-|-++.|
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI  273 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAI  273 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceE
Confidence            99999999987321      11                   1   112366777777773   4677777766655

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=4.7e-09  Score=91.91  Aligned_cols=117  Identities=14%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC--C---CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP--A---DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~--~---~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      +|.++|+.++|+  ..+|++|+ ||.|+-|..+......  +   ....|... ...-..|+++-..|..+.+|..| .|
T Consensus        60 ahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD  135 (325)
T KOG0649|consen   60 AHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GD  135 (325)
T ss_pred             ccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CC
Confidence            799999999997  45777776 6999999987652211  1   11122111 11123589999999955555555 79


Q ss_pred             CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          448 GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.+.-||+++|+....|.||++.|.+|.-.. ....++||+.||+|||
T Consensus       136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRv  182 (325)
T KOG0649|consen  136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRV  182 (325)
T ss_pred             eEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEE
Confidence            9999999999999999999999999999855 4457889999999986

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=98.98  E-value=2.6e-09  Score=100.37  Aligned_cols=34  Identities=24%  Similarity=0.850  Sum_probs=31.1

Q ss_pred             CCCccccccccchhhhccccCCCCccchhhHHhh
Q 048199           49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITH   82 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~   82 (495)
                      ++|+|.||||...|++|.+|+|||+.|+.|....
T Consensus         1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~   34 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNI   34 (699)
T ss_pred             CcccccCceehhhccCceEeecccHHHHHHHHhh
Confidence            3789999999999999999999999999998743

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.98  E-value=1.9e-09  Score=97.99  Aligned_cols=147  Identities=14%  Similarity=0.186  Sum_probs=108.4

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      .+.++.+-....+.|+.....+-.....+++     .|...|+.|.|.|..+.|++|+.|+.-.||....+ .   ....
T Consensus        22 rt~iAv~~~~~evhiy~~~~~~~w~~~htls-----~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-~---~Wkp   92 (361)
T KOG1523|consen   22 RTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-----EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-G---TWKP   92 (361)
T ss_pred             CceEEeccCCceEEEEEecCCCCceeceehh-----hhCcceeEEeecCCCCceeEccCCCCccccccCCC-C---eecc
Confidence            3334444444455566554333345566666     78999999999999999999999999999999543 0   1122


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ......++...+++.|+|. ++.|++|+.-..|.||=......    -..-..+...|.+++|+| ++-+|+.||.|+..
T Consensus        93 tlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~  170 (361)
T KOG1523|consen   93 TLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKC  170 (361)
T ss_pred             ceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcce
Confidence            3344467788999999999 99999999999999997653221    112234678899999999 99999999999988


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ||
T Consensus       171 rV  172 (361)
T KOG1523|consen  171 RV  172 (361)
T ss_pred             eE
Confidence            75

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.98  E-value=2.6e-10  Score=75.87  Aligned_cols=43  Identities=40%  Similarity=1.012  Sum_probs=37.7

Q ss_pred             ccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCCcC
Q 048199           54 LCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGHYL   96 (495)
Q Consensus        54 ~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~   96 (495)
                      .|+||++.+.+|+.+ +|||.||..|+.+|+.. ...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999999888765 59999999999999987 67899999753

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.5e-10  Score=111.96  Aligned_cols=58  Identities=38%  Similarity=0.812  Sum_probs=51.9

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcCC-----CCCCCCCCcCccCCCcchHHHHH
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-----SDCPCCGHYLTNNQLYPNFLLDK  109 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-----~~CP~Cr~~~~~~~l~~n~~l~~  109 (495)
                      ++.||||++.+.-|+.+.|||.||..||.+||...     ..||.|+..+.+++|.+.+....
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~  248 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD  248 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence            78999999999999999999999999999999865     48999999999999888776543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=96.94  Aligned_cols=149  Identities=19%  Similarity=0.238  Sum_probs=110.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .+++.+..| ....+++++..|-.+...+.......-.+..+.|.+++|+| +...++.++...++-||.-...      
T Consensus       168 ~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------  240 (406)
T KOG2919|consen  168 PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------  240 (406)
T ss_pred             CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC------
Confidence            445555554 44578888887666655454443322225688999999999 4558999999999999988775      


Q ss_pred             cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEEeCCC-CcceeecccccC-cEEE--EEeecCCCCeEEEee
Q 048199          415 VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVWDVTT-QQSVMEYEEHEK-RAWS--VDFSRTEPSMLVSGS  488 (495)
Q Consensus       415 ~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd~~~-~~~~~~~~~h~~-~v~~--v~~~~~~g~~l~s~s  488 (495)
                        .|.. ..+|.+.|+-+.|.++ |+.|++|.. |-.|..||++. +.++..+..|.+ .--.  ....| .+.+|++|+
T Consensus       241 --~pl~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~  316 (406)
T KOG2919|consen  241 --RPLQLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGD  316 (406)
T ss_pred             --CceeeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccC
Confidence              3433 3478899999999999 889999885 56899999985 678888888865 2222  34457 899999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .||.|++
T Consensus       317 tdG~V~v  323 (406)
T KOG2919|consen  317 TDGSVRV  323 (406)
T ss_pred             CCccEEE
Confidence            9999975

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=3.1e-09  Score=98.82  Aligned_cols=122  Identities=18%  Similarity=0.283  Sum_probs=99.3

Q ss_pred             cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCC
Q 048199          370 GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       370 ~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      .++.+|.+.|.+|.|+.++++|++||.|..+++|.+......  ....|+..++  |.+.|.|++|+.. ..++++|..+
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--KTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERW  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--cCCCCceeccCccccceEEEEEccC-CeeEecCCCc
Confidence            345589999999999999999999999999999999764110  1113444443  4578999999988 8899999999


Q ss_pred             CcEEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          448 GIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++|.+-|+.+.+.+..+...  .+.|+.+..+| ..++|++.+.|+.|.+
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~  175 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSF  175 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEE
Confidence            99999999999888887632  45899999999 5678999999998753

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.95  E-value=1.5e-09  Score=104.78  Aligned_cols=135  Identities=15%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +..++.++.+.+.|+.++||.-+..-+         ..+.....+|+|++|.|+.+.++.+. .+.+.|=-+...     
T Consensus       112 W~~dGtgLlt~GEDG~iKiWSrsGMLR---------Stl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n-----  176 (737)
T KOG1524|consen  112 WSPDGAGLLTAGEDGVIKIWSRSGMLR---------STVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN-----  176 (737)
T ss_pred             cCCCCceeeeecCCceEEEEeccchHH---------HHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccc-----
Confidence            346788999999999999997532211         11224567899999999877555443 234555444443     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                        ..++....|.+-|.+++|++. .++|+||+.|-..+|||.. |..+..-..|+.+|++|+|+| + ..++.+|.
T Consensus       177 --~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~  246 (737)
T KOG1524|consen  177 --SKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLWSY  246 (737)
T ss_pred             --cceeEEeccCcEEEEeecCcc-ccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeeeee
Confidence              345666789999999999999 8999999999999999965 777777778888888888888 6 55566654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=7.8e-09  Score=96.46  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             cCcccchhh--HHhhhhhhhcccCceEEEEeec--cccccCC--CcEEEEEEccC--CCEEEEEeCCCcEEEEEcccccc
Q 048199          339 EGYNAGLAD--FQSVLTTFTRYSRLRVIAELRH--GDIFHSA--NIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       339 ~~~~~g~~d--~~~~lw~~~~~~~~~~~~~~~~--~~~~~h~--~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      ..++.|+..  ..+.||++..   ...+|..++  .+.++-.  -+++++.|-+.  ...|+++..-+.+|+||.+.+  
T Consensus       162 ~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--  236 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--  236 (412)
T ss_pred             ceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--
Confidence            335567776  6788999843   256666654  1222222  35677889886  789999999999999999987  


Q ss_pred             CCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEee
Q 048199          411 EPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       411 ~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                           +.|+..+. ...+++++...|+ +++|++|..-|.+..||.+.+..... |.+-.+.|.+|..+| .+.+|+++|
T Consensus       237 -----RRPV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~G  309 (412)
T KOG3881|consen  237 -----RRPVAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCG  309 (412)
T ss_pred             -----CcceeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeec
Confidence                 56777664 4568999999999 99999999999999999999988776 888999999999999 889999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      -|+.|||
T Consensus       310 LDRyvRI  316 (412)
T KOG3881|consen  310 LDRYVRI  316 (412)
T ss_pred             cceeEEE
Confidence            9999986

>PHA02926 zinc finger-like protein; Provisional

Probab=98.94  E-value=3.5e-10  Score=97.56  Aligned_cols=50  Identities=30%  Similarity=0.831  Sum_probs=40.4

Q ss_pred             CCCCccccccccchhhh---------ccccCCCCccchhhHHhhhcCC------CCCCCCCCcCc
Q 048199           48 ELDKDMLCPICMQIIKE---------AFLTACGHSFCYMCIITHLRNK------SDCPCCGHYLT   97 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~---------Pv~l~CGH~FC~~Ci~~~~~~~------~~CP~Cr~~~~   97 (495)
                      ...++..|+||++...+         ++..+|+|+||..||.+|....      ..||.||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34567899999998744         2456899999999999998753      36999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.92  E-value=6.6e-09  Score=94.53  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=116.0

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +......+.+++.|....+|....-.+.++...+.     .|+..++++.|+|.++.|++||.-+.|.||-++..-.-..
T Consensus        63 Wap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-----RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   63 WAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-----RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             ecCCCCceeEccCCCCccccccCCCCeeccceeEE-----EeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence            34445678899999999999985445555555555     6789999999999999999999999999999876411100


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVD  475 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~  475 (495)
                         .......+.+.|.+++|||. +-+|+.|+.|+..+||...                  -|.....+....++|..+.
T Consensus       138 ---sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~  213 (361)
T KOG1523|consen  138 ---SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL  213 (361)
T ss_pred             ---hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence               11123345677999999999 8899999999999999642                  1233444445678999999


Q ss_pred             eecCCCCeEEEeeCCCcEeC
Q 048199          476 FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+| .|..|+=.+.|++|.+
T Consensus       214 fs~-sG~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  214 FSP-SGNRLAWVGHDSTVSF  232 (361)
T ss_pred             eCC-CCCEeeEecCCCceEE
Confidence            999 9999999999998753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.92  E-value=1.4e-08  Score=97.49  Aligned_cols=137  Identities=14%  Similarity=0.112  Sum_probs=108.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .++...+.+.+.|+.+.||+     ..+.+|+...      ..++.++.|||.| .++.|...|.+.+.|..+.      
T Consensus       377 hps~~q~~T~gqdk~v~lW~-----~~k~~wt~~~------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~------  438 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWN-----DHKLEWTKII------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ------  438 (626)
T ss_pred             CCChhheeeccCcceEEEcc-----CCceeEEEEe------cCceeEeeccCcc-eEEEeeccceEEEEecccc------
Confidence            45566788889999999998     2345666553      4678899999999 9999999999999999985      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeeccc-ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                        ..+..-....++++++|+|+ |.+||.|+.|+.|.||-+.. |..+....- |..+|+.++|++ |+++|.+-|.|-.
T Consensus       439 --~lv~~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  439 --DLVTIHTDNEQLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYE  514 (626)
T ss_pred             --eeEEEEecCCceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceE
Confidence              22333234778999999999 99999999999999999864 444333322 347999999999 9999999998865


Q ss_pred             E
Q 048199          493 V  493 (495)
Q Consensus       493 v  493 (495)
                      |
T Consensus       515 i  515 (626)
T KOG2106|consen  515 I  515 (626)
T ss_pred             E
Confidence            4

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.92  E-value=1.5e-08  Score=92.27  Aligned_cols=102  Identities=19%  Similarity=0.318  Sum_probs=84.4

Q ss_pred             CCCEEEE-EeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeec
Q 048199          387 DDQLFAT-AGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEY  464 (495)
Q Consensus       387 ~~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~  464 (495)
                      ...+||. |-.-|.|+|-|+....     ...+.....|.+.|.|++.+.+ |..+||+|..|+ |+|||..+|..+..+
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~-----~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTK-----PNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcC-----cCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence            3345553 4456899999998751     1135667789999999999999 999999999998 899999999999998


Q ss_pred             ccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          465 EEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       465 ~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..-  ...|++++|+| +..+|+.+|+-|+|+|
T Consensus       221 RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHI  252 (346)
T ss_pred             ecCCchheEEEEEeCC-CccEEEEEcCCCeEEE
Confidence            642  45799999999 9999999999999875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.90  E-value=6.8e-09  Score=102.35  Aligned_cols=157  Identities=11%  Similarity=0.064  Sum_probs=109.3

Q ss_pred             ccccccccCcccchh-hHHhhhhhhhcccCceEEEEeeccccccC---CCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199          332 DKNIIHREGYNAGLA-DFQSVLTTFTRYSRLRVIAELRHGDIFHS---ANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS  407 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~-d~~~~lw~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~  407 (495)
                      ...+.+...+++++. |..+++||+.+.-..-.........+..|   .-.+.++..+..|.+|+..+.|++|.+|++.+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            345566677776665 99999999854321110111111111123   44678888888899888878899999999987


Q ss_pred             cccCCCCcCCCeeecCCC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCe
Q 048199          408 VVNEPADVHCPVVEMPTR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      ..      ..++..+.+.   .-...-..+|| +.++++|+.|....+|.+.+. .....+.||.-.|++|+|.|..-.-
T Consensus       303 ~s------~sP~~~~sg~~~~sf~vks~lSpd-~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~  375 (720)
T KOG0321|consen  303 LS------ISPVAEFSGKLNSSFYVKSELSPD-DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP  375 (720)
T ss_pred             cC------cCchhhccCcccceeeeeeecCCC-CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence            51      2333333221   11223345788 899999999999999999875 4677889999999999999866667


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      ++++++|.+++|
T Consensus       376 v~TcSdD~~~ki  387 (720)
T KOG0321|consen  376 VATCSDDFRVKI  387 (720)
T ss_pred             ceeeccCcceEE
Confidence            888899998875

>smart00184 RING Ring finger

Probab=98.87  E-value=8.1e-10  Score=70.85  Aligned_cols=38  Identities=42%  Similarity=1.208  Sum_probs=35.0

Q ss_pred             cccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCC
Q 048199           55 CPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~C   92 (495)
                      |+||++...+++.++|||.||..|+.+|+. ....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998 55689987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.87  E-value=1.2e-08  Score=98.71  Aligned_cols=118  Identities=19%  Similarity=0.252  Sum_probs=93.0

Q ss_pred             CCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-------CC-------------CcCCCeeecC-CCCCeEEEEE
Q 048199          376 ANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-------PA-------------DVHCPVVEMP-TRSKLSCLSW  433 (495)
Q Consensus       376 ~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-------~~-------------~~~~~~~~~~-~~~~i~~~~~  433 (495)
                      ...|+++.|-| +..+|+.+-.++.+.+||.......       ++             ....|+..+. ..+.|+..+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            57899999999 5567888889999999987532110       00             0112332221 2357899999


Q ss_pred             cCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          434 NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       434 ~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|| +.+||+-+.||.++|||..+.+.+..++..-+...||+|+| ||++|++|+.|.-|.|
T Consensus       299 S~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtV  358 (636)
T KOG2394|consen  299 SPD-GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTV  358 (636)
T ss_pred             cCC-CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEE
Confidence            998 99999999999999999999888888887788899999999 9999999999987754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=5.4e-10  Score=113.72  Aligned_cols=59  Identities=29%  Similarity=0.669  Sum_probs=52.0

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~  105 (495)
                      ..+..-|.||+|..-|+|.+++.|||.||..|+...+... .+||.|+..|...|+.+.|
T Consensus       638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            4567789999999999999999999999999999877654 6999999999998887654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=1.8e-08  Score=95.04  Aligned_cols=106  Identities=21%  Similarity=0.287  Sum_probs=86.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                      ..++|+++|..+++++.||++|||++...       ........|++.|.++.|+|| +.+|++-+.| ..+|||+++|.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCc
Confidence            68899999999999999999999998776       344455578899999999999 8999999988 99999998873


Q ss_pred             ceeecc-----------------------------------------cc-------------cCcEEEEEeecCCCCeEE
Q 048199          460 SVMEYE-----------------------------------------EH-------------EKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       460 ~~~~~~-----------------------------------------~h-------------~~~v~~v~~~~~~g~~l~  485 (495)
                      +++...                                         .|             ...|.+++.+. +|++++
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~A  297 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLA  297 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEE
Confidence            322211                                         01             13688999999 999999


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      .|+.||.|-|
T Consensus       298 lGT~dGsVai  307 (398)
T KOG0771|consen  298 LGTMDGSVAI  307 (398)
T ss_pred             EeccCCcEEE
Confidence            9999998854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=1.6e-08  Score=92.78  Aligned_cols=142  Identities=10%  Similarity=0.113  Sum_probs=99.1

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCC-CcEEEEEEccCCCEEEEEeC----CCcEEEEEccccccCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSA-NIVSSIEFDRDDQLFATAGV----SRRIKVFDFASVVNEP  412 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~s~s~----d~~i~vwd~~~~~~~~  412 (495)
                      .-.+.+++.|++|++||+....+...+..-      +|. .+..+++..-.++++++|..    |-.|.+||++..    
T Consensus        84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~----  153 (376)
T KOG1188|consen   84 PHGVISCSSDGTVRLWDIRSQAESARISWT------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE----  153 (376)
T ss_pred             CCeeEEeccCCeEEEEEeecchhhhheecc------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc----
Confidence            345678889999999999654432222111      233 35556665556777877643    677999999987    


Q ss_pred             CCcCCCee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc----ceeecccccCcEEEEEeecCCC-CeEE
Q 048199          413 ADVHCPVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEP-SMLV  485 (495)
Q Consensus       413 ~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g-~~l~  485 (495)
                         ..++.  .-.|.+.|+++.|||.+.++|+|||.||.|.|||++.-.    .+.++ .|...|..+.|.. ++ ..|.
T Consensus       154 ---qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~-~~ykrI~  228 (376)
T KOG1188|consen  154 ---QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLS-KKYKRIM  228 (376)
T ss_pred             ---cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeec-CCcceEE
Confidence               22222  336889999999999999999999999999999997532    23334 3777899999987 65 2466


Q ss_pred             EeeCCCcEe
Q 048199          486 SGSDDCKVL  494 (495)
Q Consensus       486 s~s~D~~v~  494 (495)
                      +-+.+++..
T Consensus       229 clTH~Etf~  237 (376)
T KOG1188|consen  229 CLTHMETFA  237 (376)
T ss_pred             EEEccCcee
Confidence            656555543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.82  E-value=7e-08  Score=96.35  Aligned_cols=135  Identities=23%  Similarity=0.319  Sum_probs=105.0

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeec
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEM  422 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~  422 (495)
                      +..|..+.+|++..  .......+.     .|...|.++.|+|++..+++++. |+.+++|++...       .......
T Consensus       130 ~~~d~~~~~~~~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  195 (466)
T COG2319         130 SSLDGTVKLWDLST--PGKLIRTLE-----GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------KPLSTLA  195 (466)
T ss_pred             CCCCccEEEEEecC--CCeEEEEEe-----cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-------ceEEeec
Confidence            34467888888752  123333344     78999999999999998888886 999999999974       1122222


Q ss_pred             CCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCCCccee-ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          423 PTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVM-EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       423 ~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|...+.+++|+|+ +. ++++++.|+.|++||...+..+. .+.+|...+ ...|++ ++.++++++.|+.+++
T Consensus       196 ~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~  267 (466)
T COG2319         196 GHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRL  267 (466)
T ss_pred             cCCCceEEEEEcCC-cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEE
Confidence            47889999999998 65 66666999999999999888887 688998775 448999 8788899999999874

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.81  E-value=2.4e-09  Score=78.51  Aligned_cols=40  Identities=33%  Similarity=0.909  Sum_probs=34.0

Q ss_pred             ccccccchhhhc-------------cccCCCCccchhhHHhhhcCCCCCCCCC
Q 048199           54 LCPICMQIIKEA-------------FLTACGHSFCYMCIITHLRNKSDCPCCG   93 (495)
Q Consensus        54 ~C~IC~~~~~~P-------------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr   93 (495)
                      .|+||++.|.+|             +..+|||.|+..||.+|+..+.+||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            399999999543             2348999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=3.1e-08  Score=92.27  Aligned_cols=143  Identities=12%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             cccCcccchhhHHhhhhhhhcc--cCc-eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          337 HREGYNAGLADFQSVLTTFTRY--SRL-RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~--~~~-~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      .+..+++|++|..+++|.+...  .+. +++.....    .|.+.|.+++|+-...++++|+.+++|.+.|+.+.     
T Consensus        67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~----~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-----  137 (609)
T KOG4227|consen   67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH----PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-----  137 (609)
T ss_pred             CCeEEeecCCcceeeeechHHHHhhcCCCCceeccC----ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----
Confidence            4566899999999999997432  122 34444432    57899999999998899999999999999999986     


Q ss_pred             CcCCCeeecCCC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-cee--ecccccCcEEEEEeecCCCCeEEEe
Q 048199          414 DVHCPVVEMPTR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVM--EYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       414 ~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~--~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                         ..+....|.   +.|+.+..+|- .++|++.+.+|.|.+||++... ...  .........+++-|+|..+.+|++.
T Consensus       138 ---qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  138 ---QSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             ---eeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence               334444444   47999999999 8999999999999999998644 211  1222345678899999889999998


Q ss_pred             eCCCc
Q 048199          488 SDDCK  492 (495)
Q Consensus       488 s~D~~  492 (495)
                      +..+-
T Consensus       214 ~~~~G  218 (609)
T KOG4227|consen  214 SETGG  218 (609)
T ss_pred             cccCC
Confidence            86553

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=4.9e-08  Score=92.96  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=110.9

Q ss_pred             cccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccc
Q 048199          331 SDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~  409 (495)
                      ...+++....+.+++-|++++|+.+..... ..++.+.     --..+|.+..|.|+|. .++++|.-+.+..||+.+.+
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~-----l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIH-----LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCccC-hhheeee-----eccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            334455667778888999999998853221 2344443     1257899999999999 89999999999999998751


Q ss_pred             cC----CCCcC------------CC-ee--------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          410 NE----PADVH------------CP-VV--------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       410 ~~----~~~~~------------~~-~~--------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ..    +.+..            .. +.                    .+.-.+.|..+.|+.| +..|+..+.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSD-SKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecC-CcEEEEEcCCceEEE
Confidence            11    00000            00 00                    1112355788999988 677777777899999


Q ss_pred             EeCCCCcceeecccccC-cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTTQQSVMEYEEHEK-RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~-~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||++...++..|....+ .-++++.++ +|.+||+||..|.|-|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNI  413 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEE
Confidence            99999999888875432 235677778 9999999999998754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.80  E-value=1.4e-08  Score=91.16  Aligned_cols=146  Identities=14%  Similarity=0.185  Sum_probs=105.9

Q ss_pred             cccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          341 YNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      +++.++  .++||.+.. -.+......+....-..+.++++++.|+. +-+++.++|.|-|-.|||+.++.    .+.-.
T Consensus       116 LATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vk  189 (364)
T KOG0290|consen  116 LATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVK  189 (364)
T ss_pred             hhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc----cccee
Confidence            444444  678998753 12233333343333235678999999986 77899999999999999999861    11223


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE---HEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      ...+.|...|..++|...+-..|+|.+.||+|++||++...--..+.+   ...+...++|++.|++++||-..|..
T Consensus       190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            455689999999999987778999999999999999997554333322   14577889999888899888776653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.79  E-value=3e-08  Score=100.86  Aligned_cols=154  Identities=14%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             cccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEccccccC-
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDD--QLFATAGVSRRIKVFDFASVVNE-  411 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~--~~l~s~s~d~~i~vwd~~~~~~~-  411 (495)
                      +...++.|..+++|.+||......  ...+....    ..|..+|+.+.|..+.  .-|+++|.||+|..|+++..... 
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~----~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~  329 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE----VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV  329 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCccccccc----ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence            345677888899999999864332  11222222    1689999999997644  45999999999999998642100 


Q ss_pred             ------CC-----------------------------------------CcC-CC------e-eecCCCCCeEEEEEcCC
Q 048199          412 ------PA-----------------------------------------DVH-CP------V-VEMPTRSKLSCLSWNKF  436 (495)
Q Consensus       412 ------~~-----------------------------------------~~~-~~------~-~~~~~~~~i~~~~~~p~  436 (495)
                            ..                                         +.. .+      . ....|.++|+++.++|.
T Consensus       330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF  409 (555)
T KOG1587|consen  330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF  409 (555)
T ss_pred             hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence                  00                                         000 00      0 12246678999999999


Q ss_pred             CCCEEEEecCCCcEEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          437 SKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       437 ~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ...+|.+++ |.+|+||.-. ...++..+..+.+.|++++|||+.+..++++..||.|.|
T Consensus       410 ~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  410 YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence            555555655 9999999988 678888898899999999999988999999999998864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.78  E-value=1.2e-09  Score=110.42  Aligned_cols=97  Identities=18%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      -...+|++|..++||..   .....+.+++     ||.+.|++++.+....+++++|.|..|++|-+..+        .+
T Consensus       203 ~~Iitgsdd~lvKiwS~---et~~~lAs~r-----Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--------~p  266 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSM---ETARCLASCR-----GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--------AP  266 (1113)
T ss_pred             ceEeecCccceeeeeec---cchhhhccCC-----CCccccchhccchhhhhhhhcccCceEEEEecCCC--------ch
Confidence            34678999999999985   3344566666     99999999999988889999999999999999987        34


Q ss_pred             e-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          419 V-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       419 ~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      + ...+|.+.|++++|+|. .    +.+.||++++||.+
T Consensus       267 vsvLrghtgavtaiafsP~-~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHHhccccceeeeccCcc-c----cCCCCCceEecccc
Confidence            3 34589999999999997 3    77789999999976

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.2e-07  Score=93.04  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ||++.|++|+.+|.|.+|++|+.||+||||.+.++        ..+..+...+.|.+++|+|.....++....++.+.|-
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            99999999999999999999999999999999998        4555566677899999999854444444444556565


Q ss_pred             eCCCCc-------------------------------------ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          454 DVTTQQ-------------------------------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       454 d~~~~~-------------------------------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      +..-|.                                     -+.....|...|..|.|+. .|.||++...|+
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~  543 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDS  543 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCC
Confidence            532220                                     0112224778899999999 999999988654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.78  E-value=9.4e-08  Score=94.85  Aligned_cols=150  Identities=15%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             cccccCcccchhhHHhhhhhhh-----cccCceEEEEeeccc----------------------cccC--CCcEEEEEEc
Q 048199          335 IIHREGYNAGLADFQSVLTTFT-----RYSRLRVIAELRHGD----------------------IFHS--ANIVSSIEFD  385 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~-----~~~~~~~~~~~~~~~----------------------~~~h--~~~V~~l~~~  385 (495)
                      .-++..+++|+.|..|.+|...     +|+....++-+.-.-                      ...|  ...|.+.+|.
T Consensus        62 s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt  141 (1081)
T KOG1538|consen   62 AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT  141 (1081)
T ss_pred             ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec
Confidence            3577889999999999999842     444333333332110                      0112  3466777888


Q ss_pred             cCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcC----------------------------
Q 048199          386 RDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNK----------------------------  435 (495)
Q Consensus       386 p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p----------------------------  435 (495)
                      .||++|+-|-.||+|.+-+-....+       .....  +.+++||+++|+|                            
T Consensus       142 nDGqylalG~~nGTIsiRNk~gEek-------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  142 NDGQYLALGMFNGTISIRNKNGEEK-------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             CCCcEEEEeccCceEEeecCCCCcc-------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence            9999999999999999886543200       00000  1233444444444                            


Q ss_pred             ------------------CCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          436 ------------------FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       436 ------------------~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                                        + |.++..|+.|+.+++|- +.|..+.++.....|||+|+..| |+.+++.|+.||+|-
T Consensus       215 Igk~r~L~FdP~CisYf~N-GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTN-GEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCCCCchhheeccC-CcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeee
Confidence                              4 67777777788888876 45777777777788999999999 999999999999973

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=7.1e-08  Score=84.66  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=81.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      -..|.++.++|..+-+++++.|+.+.-||++++       .......+|.+.|.++.--.. ...|+||+.||+++|||.
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-------~i~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-------RIQREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDT  185 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCC-------EEEEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEec
Confidence            357899999998887778888999999999998       334455588899999988555 568999999999999999


Q ss_pred             CCCcceeeccc---------c-cCcEEEEEeecCCCCeEEEeeC
Q 048199          456 TTQQSVMEYEE---------H-EKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       456 ~~~~~~~~~~~---------h-~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ++++++..+..         | ..+|-+++-+   ..+|+.|+.
T Consensus       186 kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCGgG  226 (325)
T KOG0649|consen  186 KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCGGG  226 (325)
T ss_pred             cccceeEEeccccChhhcCcccCceeEEEecc---CceEEecCC
Confidence            99998887753         2 3456666654   478887764

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.3e-09  Score=95.09  Aligned_cols=50  Identities=28%  Similarity=0.677  Sum_probs=43.3

Q ss_pred             CccccccccchhhhccccCCCCccchhhHHh-hhcCCC-CCCCCCCcCccCC
Q 048199           51 KDMLCPICMQIIKEAFLTACGHSFCYMCIIT-HLRNKS-DCPCCGHYLTNNQ  100 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~-~~~~~~-~CP~Cr~~~~~~~  100 (495)
                      .+..|+||++....|..++|||+||..||.. |-.... .||.||+.+.+.+
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            4678999999999999999999999999999 655554 5999999887644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=1e-07  Score=90.88  Aligned_cols=110  Identities=15%  Similarity=0.246  Sum_probs=82.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .+.|.++.|+.+++.|+.++.+|.|.+||++..        ..+..+.-.+.  -++++.+++ +.+||+|+..|.|.||
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--------~~~~rf~D~G~v~gts~~~S~n-g~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--------SCLHRFVDDGSVHGTSLCISLN-GSYLATGSDSGIVNIY  414 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--------ceEEEEeecCccceeeeeecCC-CceEEeccCcceEEEe
Confidence            678999999999999999999999999999986        22333323333  356677787 8899999999999999


Q ss_pred             eCCCC------cceeec-----------------------------------------------ccccCcEEEEEeecCC
Q 048199          454 DVTTQ------QSVMEY-----------------------------------------------EEHEKRAWSVDFSRTE  480 (495)
Q Consensus       454 d~~~~------~~~~~~-----------------------------------------------~~h~~~v~~v~~~~~~  480 (495)
                      |..+.      +++..+                                               .+.-+.|+|++|+| +
T Consensus       415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~  493 (514)
T KOG2055|consen  415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-N  493 (514)
T ss_pred             ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-C
Confidence            95431      122211                                               11124689999999 9


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      +.+||.|..+|.|.|
T Consensus       494 sG~lAvGNe~grv~l  508 (514)
T KOG2055|consen  494 SGYLAVGNEAGRVHL  508 (514)
T ss_pred             CceEEeecCCCceee
Confidence            999999999998864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.70  E-value=1.1e-07  Score=88.46  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=74.8

Q ss_pred             HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeecC---
Q 048199          348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEMP---  423 (495)
Q Consensus       348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~---  423 (495)
                      +.|.||+.   ....++..+.     .|.+.+.+++|+++|.+|||+|..|+ ||||.+..+        ..+..+.   
T Consensus       153 GdV~l~d~---~nl~~v~~I~-----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--------~kl~eFRRG~  216 (391)
T KOG2110|consen  153 GDVVLFDT---INLQPVNTIN-----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--------QKLYEFRRGT  216 (391)
T ss_pred             ceEEEEEc---ccceeeeEEE-----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--------cEeeeeeCCc
Confidence            37888887   4456666666     79999999999999999999999887 799999887        2222221   


Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ....|.+++|+|+ +.+|.+.+..++|+||.+.
T Consensus       217 ~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  217 YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eeeEEEEEEECCC-CCeEEEecCCCeEEEEEec
Confidence            1235899999999 8899999999999999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.69  E-value=2.8e-07  Score=92.04  Aligned_cols=137  Identities=23%  Similarity=0.303  Sum_probs=102.2

Q ss_pred             Ccccchh-hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          340 GYNAGLA-DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       340 ~~~~g~~-d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      .+..+.. |..+.+|+...   ...+..+.     +|...|.+++|+|++. .+++++.|++|++||...+       ..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-------~~  233 (466)
T COG2319         169 LLASGSSLDGTIKLWDLRT---GKPLSTLA-----GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-------KL  233 (466)
T ss_pred             EEEecCCCCCceEEEEcCC---CceEEeec-----cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-------cE
Confidence            3445553 78899998753   23344444     6899999999999988 6666699999999987744       11


Q ss_pred             Ce-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc-eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          418 PV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS-VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       418 ~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .. ....|.... -..|+|+ +.++++++.|+.+++||++.... +..+.+|...|.++.|+| ++..+++++.|+.++
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~  309 (466)
T COG2319         234 LRSTLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVR  309 (466)
T ss_pred             EeeecCCCCcce-eEeECCC-CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEE
Confidence            11 233444443 2389999 68888999999999999987664 555578899999999999 888898888887654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.69  E-value=1.6e-08  Score=100.23  Aligned_cols=125  Identities=13%  Similarity=0.292  Sum_probs=97.8

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL  428 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i  428 (495)
                      .+.++|..   ....+.+++     +|.+.|++++|+.+|+.|++|+.|+.|.+|+-.-.         -...+.|.+.|
T Consensus        34 rlliyD~n---dG~llqtLK-----gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---------G~LkYSH~D~I   96 (1081)
T KOG1538|consen   34 RLLVYDTS---DGTLLQPLK-----GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---------GILKYSHNDAI   96 (1081)
T ss_pred             EEEEEeCC---Ccccccccc-----cccceEEEEEEccCCceeccCCCceeEEEeccccc---------ceeeeccCCee
Confidence            56677763   334466666     99999999999999999999999999999986643         34566899999


Q ss_pred             EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       429 ~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      -|+.|+|- ..+|+|++.+ ..-+|..... .+.... -..+|.+.+|+. ||.+|+-|-.||+|.|
T Consensus        97 QCMsFNP~-~h~LasCsLs-dFglWS~~qK-~V~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen   97 QCMSFNPI-THQLASCSLS-DFGLWSPEQK-SVSKHK-SSSRIICCSWTN-DGQYLALGMFNGTISI  158 (1081)
T ss_pred             eEeecCch-HHHhhhcchh-hccccChhhh-hHHhhh-hheeEEEeeecC-CCcEEEEeccCceEEe
Confidence            99999999 8889988764 5668876532 222221 245788999999 9999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.68  E-value=2.3e-07  Score=89.09  Aligned_cols=134  Identities=11%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCee
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      ..+..+..+.+|+...   ...+..+.     .+ ..+..+.|+|+++.++ +++.|+.|++||+.+.        ..+.
T Consensus        47 ~~~~~~~~v~~~d~~~---~~~~~~~~-----~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--------~~~~  109 (300)
T TIGR03866        47 VCASDSDTIQVIDLAT---GEVIGTLP-----SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETR--------KVLA  109 (300)
T ss_pred             EEECCCCeEEEEECCC---CcEEEecc-----CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC--------eEEe
Confidence            4566677888998742   22233333     22 2246789999998665 4566899999999875        2233


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCcEeC
Q 048199          421 EMPTRSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCKVLY  495 (495)
Q Consensus       421 ~~~~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~v~l  495 (495)
                      .+.....+.+++|+|+ +.++++++.++ .+.+||..++..+..+.. ...+..++|++ ++.+|+ ++..|+.|++
T Consensus       110 ~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~i  183 (300)
T TIGR03866       110 EIPVGVEPEGMAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTA-DGKELWVSSEIGGTVSV  183 (300)
T ss_pred             EeeCCCCcceEEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECC-CCCEEEEEcCCCCEEEE
Confidence            3333445688999999 88888888765 577889988776655432 23457799999 888775 4445887763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=6.4e-08  Score=100.75  Aligned_cols=147  Identities=15%  Similarity=0.177  Sum_probs=106.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCc--EEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANI--VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ++.++.|..|+++++||..--.....+..-+     .|+..  |..+.+.+.|- .|++|+.||.|++||++.....  .
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-----~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e--~ 1293 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-----EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE--T 1293 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeec-----ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc--c
Confidence            4567789999999999974222222333333     57776  99999998665 4999999999999999984111  1


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~  487 (495)
                      ....+......+.++++..|+. ..+||+|+. +.|+|||+. |+.+..+..+       .+.+.+++|+| .--+||.|
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG 1369 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAG 1369 (1387)
T ss_pred             cceeeeccccCccceeeeeccC-CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhc
Confidence            1111222223345899999999 889999998 999999986 6665555433       34679999999 77789999


Q ss_pred             eCCCcEeC
Q 048199          488 SDDCKVLY  495 (495)
Q Consensus       488 s~D~~v~l  495 (495)
                      +.|.+|.|
T Consensus      1370 ~~Ds~V~i 1377 (1387)
T KOG1517|consen 1370 SADSTVSI 1377 (1387)
T ss_pred             cCCceEEE
Confidence            99998864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=7.1e-08  Score=94.66  Aligned_cols=112  Identities=15%  Similarity=0.191  Sum_probs=94.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ....|.+++.||.|..|+.++.|+.+..||++-.       ..+... ..|...+++++||+. -.+|++|+.||++.||
T Consensus       606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldls-------skPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-------SKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVF  677 (733)
T ss_pred             CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-------cchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEE
Confidence            4668999999999999999999999999999876       223332 357778999999999 8999999999999999


Q ss_pred             eCCC---------CcceeecccccCc----EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTT---------QQSVMEYEEHEKR----AWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~---------~~~~~~~~~h~~~----v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .-.-         -.++..+.+|...    |..+.|+| .-.+|+|++.||+|+|
T Consensus       678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirl  731 (733)
T KOG0650|consen  678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRL  731 (733)
T ss_pred             eeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEe
Confidence            5321         2467888999765    88999999 7789999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.65  E-value=6.9e-08  Score=93.56  Aligned_cols=111  Identities=18%  Similarity=0.376  Sum_probs=90.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|.+.|.+-.|+|+|.-|+|+|.||.|++|.-....+      ..+  ......|+|++|.|++.+++++.+  +.+.|=
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR------Stl--~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK  171 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR------STV--VQNEESIRCARWAPNSNSIVFCQG--GHISIK  171 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH------HHH--hhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence            6999999999999999999999999999999766521      111  234557999999999778888765  456665


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      -+.....+-....|.+-|.+++|++ ..++++||+.|-..||
T Consensus       172 pL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKv  212 (737)
T KOG1524|consen  172 PLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKI  212 (737)
T ss_pred             ecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEe
Confidence            6665666777889999999999999 8899999999987764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.64  E-value=1.4e-08  Score=93.23  Aligned_cols=71  Identities=25%  Similarity=0.596  Sum_probs=57.3

Q ss_pred             ccccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC----CCcchHHHHHHHHHH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN----QLYPNFLLDKLLKKT  114 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~~v~~~  114 (495)
                      ....++...++|.+|..+|.|+-++ -|-|+||+.||.+++.....||.|...+...    .+.....++.++.++
T Consensus         7 vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen    7 VKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            4456777889999999999999855 6999999999999999999999999877543    355556666665554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=4.4e-07  Score=84.15  Aligned_cols=145  Identities=13%  Similarity=0.195  Sum_probs=100.7

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCC------
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEP------  412 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~------  412 (495)
                      .++.+..|-.|++++-..    .....++.    .....|++++|-|. +..|+.|+ -+-|.||..+...+.-      
T Consensus       112 ~fava~nddvVriy~kss----t~pt~Lks----~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~  182 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS----TCPTKLKS----VSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMM  182 (445)
T ss_pred             hhhhhccCcEEEEeccCC----CCCceecc----hhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccc
Confidence            456677777888887532    11222222    12456999999995 44666666 4569999987652221      


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ..++..+.....+..|+++.|++| +..+++++.+ ..|.|||..++..+.-..---+.+.-+.|+| ||.+|+.++-|+
T Consensus       183 s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~da  260 (445)
T KOG2139|consen  183 STHHLQVLQDPGHNPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDA  260 (445)
T ss_pred             cccchhheeCCCCceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccc
Confidence            122233344445578999999999 8889988864 5799999999877655533356788899999 999999999998


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      ..++
T Consensus       261 vfrl  264 (445)
T KOG2139|consen  261 VFRL  264 (445)
T ss_pred             eeee
Confidence            7764

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.1e-09  Score=96.44  Aligned_cols=71  Identities=34%  Similarity=0.787  Sum_probs=55.8

Q ss_pred             ccccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCC-CCCCCCCCcCcc-CCCcchHHHHHHHHHH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-NQLYPNFLLDKLLKKT  114 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~l~~n~~l~~~v~~~  114 (495)
                      ..+..|..++.||||+++++...++ .|+|-||..||.+.+... ..||.||+.+.. +.|++.-.+..++..+
T Consensus        35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            4456778899999999999999877 599999999999987765 689999998854 5666554444555544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=2.1e-07  Score=97.05  Aligned_cols=139  Identities=13%  Similarity=0.141  Sum_probs=101.2

Q ss_pred             cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199          343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE  421 (495)
Q Consensus       343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  421 (495)
                      .+++-..|+|||..   +...+.++..    +....|++++-+. .|+.++.|-.||.|++||.+....     ...+..
T Consensus      1182 ~tGd~r~IRIWDa~---~E~~~~diP~----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-----ds~v~~ 1249 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAH---KEQVVADIPY----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-----DSLVCV 1249 (1387)
T ss_pred             ecCCeeEEEEEecc---cceeEeeccc----CCCccceeecccccCCceEEEeecCCceEEeecccCCc-----ccccee
Confidence            34445678899883   4455666665    4467788888764 679999999999999999987622     123322


Q ss_pred             -cCCCCC--eEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeeccccc--C-cEEEEEeecCCCCeEEEeeCCCcE
Q 048199          422 -MPTRSK--LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHE--K-RAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       422 -~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~--~-~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ..|...  |..+.+.+.+-..|++|+.||.|++||++...  ..-++..|.  + .++++..++ +..++|+|+. +.|
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceE
Confidence             246655  99999998734469999999999999999642  223333443  3 489999999 8899999997 666


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus      1328 kI 1329 (1387)
T KOG1517|consen 1328 KI 1329 (1387)
T ss_pred             EE
Confidence            64

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.62  E-value=6.1e-08  Score=86.07  Aligned_cols=71  Identities=18%  Similarity=0.401  Sum_probs=62.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...|..+.+-||++.|||+|.|+.||||..++.        .|... ..|.+.|++++|+|+ -.++|+++.|+.|.+|+
T Consensus       251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--------~pLAVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--------NPLAVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWK  321 (323)
T ss_pred             CCCccceEEccCCcEEeecccCCcEEEEEeccC--------CchhhhhhhhcceeEEEeCCC-CchhhhccCCceEEeee
Confidence            456889999999999999999999999999997        44333 357789999999999 88999999999999998


Q ss_pred             C
Q 048199          455 V  455 (495)
Q Consensus       455 ~  455 (495)
                      +
T Consensus       322 L  322 (323)
T KOG0322|consen  322 L  322 (323)
T ss_pred             c
Confidence            6

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.61  E-value=1.5e-07  Score=95.83  Aligned_cols=114  Identities=11%  Similarity=0.195  Sum_probs=91.1

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .|.+.|+++.++|-+..++..+.|.+|+||.....       ..|...+. +...+++++|+|....+|+++..||.|.|
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             ccCcceEeeecCCCccceeeeeccceeEeccccCC-------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence            47899999999997665554444999999998843       24555543 44559999999998899999999999999


Q ss_pred             EeCCC--CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          453 WDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~--~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ||+..  ..++.+..-+....+.+.|++ +|.+|+.|...|++++
T Consensus       469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~  512 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHI  512 (555)
T ss_pred             hhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEE
Confidence            99964  456666665666777888888 9999999999998764

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.60  E-value=1.4e-08  Score=69.86  Aligned_cols=42  Identities=26%  Similarity=0.654  Sum_probs=30.5

Q ss_pred             CCccccccccchhhhccc-cCCCCccchhhHHhhhcCC--CCCCC
Q 048199           50 DKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK--SDCPC   91 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~--~~CP~   91 (495)
                      .-.+.|||.+..|++||. ..|||+|.+..|..|+...  ..||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            446899999999999985 5899999999999999443  48998

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.57  E-value=1.3e-06  Score=79.91  Aligned_cols=75  Identities=17%  Similarity=0.356  Sum_probs=64.8

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      .|.+.|.+++++.+|.++||+|..|| |||||..++        ..+..+   .....|++++|+|+ ..+|+.+|..|+
T Consensus       179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--------~~l~E~RRG~d~A~iy~iaFSp~-~s~LavsSdKgT  249 (346)
T KOG2111|consen  179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--------TLLQELRRGVDRADIYCIAFSPN-SSWLAVSSDKGT  249 (346)
T ss_pred             cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--------cEeeeeecCCchheEEEEEeCCC-ccEEEEEcCCCe
Confidence            79999999999999999999999988 899999998        333333   23456999999999 999999999999


Q ss_pred             EEEEeCCC
Q 048199          450 VTVWDVTT  457 (495)
Q Consensus       450 v~iwd~~~  457 (495)
                      |+||.++.
T Consensus       250 lHiF~l~~  257 (346)
T KOG2111|consen  250 LHIFSLRD  257 (346)
T ss_pred             EEEEEeec
Confidence            99998764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.55  E-value=1.4e-07  Score=85.20  Aligned_cols=140  Identities=15%  Similarity=0.108  Sum_probs=102.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEE-eeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAE-LRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +.+.+|++|..+.-||+. ..+ ..++. .+     -|+..|.+|.-+| .+.+++||+.|-.|++||+++.       .
T Consensus       179 nlvytGgDD~~l~~~D~R-~p~-~~i~~n~k-----vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-------~  244 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIR-IPK-TFIWHNSK-----VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-------G  244 (339)
T ss_pred             ceEEecCCCceEEEEEec-CCc-ceeeecce-----eeecceEEEecCCCCCceEEEeccccceeeeehhcc-------c
Confidence            567899999999999985 222 33333 22     5889999999986 6889999999999999999987       3


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC--c---ceeecccccCcEEEEEeecCCCCeEEEee-CC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--Q---SVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DD  490 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D  490 (495)
                      .|+..-.-.++||.+.++|.....++.++.-.-.+|-++..+  +   ....+..|.+-++.-.|.. ...+|+|+| +|
T Consensus       245 kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYD  323 (339)
T KOG0280|consen  245 KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYD  323 (339)
T ss_pred             CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccc
Confidence            455554555899999999985444555555555677777543  3   4556677888888888866 456789887 46


Q ss_pred             CcE
Q 048199          491 CKV  493 (495)
Q Consensus       491 ~~v  493 (495)
                      +.+
T Consensus       324 k~~  326 (339)
T KOG0280|consen  324 KKI  326 (339)
T ss_pred             cce
Confidence            654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.54  E-value=9.9e-08  Score=87.80  Aligned_cols=154  Identities=19%  Similarity=0.304  Sum_probs=111.5

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .+.+.+.++ +|..+.||.+.-.+..-.+.+++..++..-+..|++..||| ..+.|+..+..|+||+.|++..  .+..
T Consensus       174 sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~--aLCd  250 (433)
T KOG1354|consen  174 SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS--ALCD  250 (433)
T ss_pred             CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh--hhhc
Confidence            445555554 88899999987666666788888655544567899999999 6789999999999999999853  1111


Q ss_pred             cCCCeee-----------cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcceeecccccC------------c
Q 048199          415 VHCPVVE-----------MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEK------------R  470 (495)
Q Consensus       415 ~~~~~~~-----------~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~------------~  470 (495)
                      .+.....           ..--+.|..+.|+++ |.++++-++ -+|++||+. ..+++.++.-|..            .
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence            1111111           011245788999999 999999987 499999994 5677777776632            2


Q ss_pred             E---EEEEeecCCCCeEEEeeCCCcEeC
Q 048199          471 A---WSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       471 v---~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |   ..++|+. ++.+++|||....+++
T Consensus       329 IfdKFec~~sg-~~~~v~TGsy~n~frv  355 (433)
T KOG1354|consen  329 IFDKFECSWSG-NDSYVMTGSYNNVFRV  355 (433)
T ss_pred             hhheeEEEEcC-CcceEecccccceEEE
Confidence            2   4568888 8889999999887664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.54  E-value=5.6e-07  Score=80.51  Aligned_cols=101  Identities=11%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCC
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..|..+..+.+|+..    ...+..+.       ...+..|.|+|+|++|++++.+   |.|.+||++..        ..
T Consensus        77 i~g~~~~~v~lyd~~----~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--------~~  137 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVK----GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--------KK  137 (194)
T ss_pred             EEccCCcccEEEcCc----ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--------EE
Confidence            345555688899883    33444443       4567889999999999998754   56999999975        33


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecC------CCcEEEEeCCCCcceeec
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDY------EGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~------dg~v~iwd~~~~~~~~~~  464 (495)
                      +....|. .+..++|+|+ |.+|+++..      |..++||+.. |..+...
T Consensus       138 i~~~~~~-~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  138 ISTFEHS-DATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             eeccccC-cEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            4444443 4789999999 889888774      7789999975 6655443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=1.4e-06  Score=80.86  Aligned_cols=104  Identities=18%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             CcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          377 NIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ..|+++.|.+||..+++++. |..|.|||.+++..      .++. ....+.++-+.|+|| +.+|+.+.-|+..++|.-
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~------~pL~-~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK------IPLI-PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc------cccc-ccCCCceeeEEEcCC-CCEEEEecccceeeeehh
Confidence            78999999999999999885 68899999999721      2222 234466889999999 999999999999999965


Q ss_pred             CCC-cceeecccccCcEEEEEeecCCCCeE-EEeeCC
Q 048199          456 TTQ-QSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDD  490 (495)
Q Consensus       456 ~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D  490 (495)
                      ... ....-.- -.+.|...+|+| .|.+| ++.+..
T Consensus       268 ~q~wt~erw~l-gsgrvqtacWsp-cGsfLLf~~sgs  302 (445)
T KOG2139|consen  268 NQSWTKERWIL-GSGRVQTACWSP-CGSFLLFACSGS  302 (445)
T ss_pred             cccceecceec-cCCceeeeeecC-CCCEEEEEEcCC
Confidence            432 2222222 244899999999 77755 444433

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.2e-08  Score=90.67  Aligned_cols=49  Identities=27%  Similarity=0.614  Sum_probs=42.1

Q ss_pred             CCccccccccchhh-h------------ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIK-E------------AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~-~------------Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ..+-.|.||+|.+- .            |+-|||||.|...|+..|++.+++||+||.++.-
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            35678999999843 2            4789999999999999999999999999999643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=5.5e-07  Score=91.36  Aligned_cols=127  Identities=11%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMP  423 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~  423 (495)
                      +..+.+||.....    ...+.     .|...|.+..|+|+|+.|+..+.+   ..|.+||+.++..      ..+..  
T Consensus       183 ~~~i~i~d~dg~~----~~~lt-----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------~~l~~--  245 (429)
T PRK01742        183 PYEVRVADYDGFN----QFIVN-----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------KVVAS--  245 (429)
T ss_pred             eEEEEEECCCCCC----ceEec-----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------EEEec--
Confidence            4567777764221    12222     567789999999999999887654   3699999987611      11111  


Q ss_pred             CCCCeEEEEEcCCCCCEEEEe-cCCCcEEEE--eCCCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCcE
Q 048199          424 TRSKLSCLSWNKFSKNRIASS-DYEGIVTVW--DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKV  493 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v  493 (495)
                      ..+....++|+|| +..|+.+ +.+|.+.||  |+.++. +..+..|...+....|+| ||..|+.++ .++.+
T Consensus       246 ~~g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~  316 (429)
T PRK01742        246 FRGHNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSP  316 (429)
T ss_pred             CCCccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCc
Confidence            1223346899999 7766654 568876665  655544 455666777788999999 998777665 45543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.50  E-value=8.9e-07  Score=87.22  Aligned_cols=127  Identities=13%  Similarity=0.105  Sum_probs=96.3

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP  423 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  423 (495)
                      |..-+.+.+++.   ......+.+.++   +|-+.|.++.++.+-..|.|++.|+.+-+|+....       ........
T Consensus        76 gt~~g~v~~ys~---~~g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-------~~~~~~~~  142 (541)
T KOG4547|consen   76 GTPQGSVLLYSV---AGGEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-------VIIRIWKE  142 (541)
T ss_pred             ecCCccEEEEEe---cCCeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccc-------eeeeeecc
Confidence            333334444444   223334444433   68999999999999999999999999999999886       11112223


Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC-----CCeEEEe
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE-----PSMLVSG  487 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~-----g~~l~s~  487 (495)
                      ....+.+++++|| +.++++++  +.|++||+++++.+.+|.||.++|+++.|.. +     |.++.++
T Consensus       143 ~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLss  207 (541)
T KOG4547|consen  143 QKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSS  207 (541)
T ss_pred             CCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeec
Confidence            4456889999999 88999987  7999999999999999999999999999987 5     5555554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.49  E-value=1.3e-06  Score=78.99  Aligned_cols=112  Identities=12%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-C
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-T  457 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~  457 (495)
                      ..++.|++.+..++++-.+|.+.+-+....     ..........|.-.+|.+.|+-.+.+++++|+.||.+..||++ .
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence            457788898888999999999985554443     0111112335777899999987778899999999999999999 3


Q ss_pred             Ccceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          458 QQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       458 ~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +..+.. ..-|...|.++.-+|..+.+|+||++|.+|++
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            444433 55688899999988878999999999999874

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=4.6e-08  Score=92.12  Aligned_cols=46  Identities=26%  Similarity=0.625  Sum_probs=40.4

Q ss_pred             cccccccchhhhc---cccCCCCccchhhHHhhhcCCC-CCCCCCCcCcc
Q 048199           53 MLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~   98 (495)
                      .+|.||+|.|+.-   ++|||+|.|+..||..|+.... .||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            4899999999964   5899999999999999999885 49999987653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.48  E-value=6.8e-07  Score=57.04  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=30.4

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd  404 (495)
                      +|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            8999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.46  E-value=2.1e-07  Score=88.91  Aligned_cols=110  Identities=17%  Similarity=0.203  Sum_probs=96.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...|..+.|-|.--+|++++..|.++.-|+.++        ..+..+ ...+.+..++-+|. +.++-.|..+|+|.+|.
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G--------klVa~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG--------KLVASIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechh--------hhhHHHHccCCccchhhcCCc-cceEEEcCCCceEEecC
Confidence            467889999998889999999999999999998        333333 34456777888999 78999999999999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+.+++..+..|.++|.+|++.+ +|+++||++.|..|+|
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKI  319 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeE
Confidence            999999999999999999999999 9999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.6e-06  Score=89.09  Aligned_cols=116  Identities=12%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|+-.+++.++||.++++++|..||.|.+|.--.....   ..+....-=|...|++++|+++ |.+|+||+..|.+-+|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~---~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD---SETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccc---cccceEEEecccccceeEEecC-CceEeecccceEEEEE
Confidence            57878999999999999999999999999965431000   0111122237789999999999 9999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      -+.++. .+-+..-.++|..+.++| |+.+.+....|..|.+
T Consensus       279 q~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  279 QLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL  318 (792)
T ss_pred             eecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence            999887 333444578999999999 9988888888887753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=8.9e-07  Score=85.18  Aligned_cols=166  Identities=14%  Similarity=0.102  Sum_probs=124.2

Q ss_pred             hhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEe
Q 048199          319 RQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAG  395 (495)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s  395 (495)
                      ....+..+.+.++... ...+..+.+|++|..+.+|+..+.   .+...+..    ||...|..-.|-|  +..-+++++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l~f~S----GH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKLSFES----GHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhcc---Cccccccc----ccccchhhhhccCCCCCcCceecc
Confidence            3344556666555544 456788999999999999998532   23334433    7888898889998  456899999


Q ss_pred             CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc---cccC---
Q 048199          396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE---EHEK---  469 (495)
Q Consensus       396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~---~h~~---  469 (495)
                      .||.|++=.+.....    .........|.++|.-++.-|+....|+|++.|+.|.-+|++++.+...+.   .+..   
T Consensus       207 ~dgqvr~s~i~~t~~----~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  207 RDGQVRVSEILETGY----VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             ccCceeeeeeccccc----eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence            999999988765411    112334446889999999999988999999999999999999876544432   2333   


Q ss_pred             cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          470 RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       470 ~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..++++..|.+.+.+++|+.|..+++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~Rv  308 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARV  308 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhh
Confidence            56889999988889999999987764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.40  E-value=5.6e-07  Score=86.02  Aligned_cols=94  Identities=14%  Similarity=0.236  Sum_probs=79.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ..+.+..+.-+|-+..+-+|...|+|.+|.-...        .|+. ...|.++|.++++++. |.|++|.+.|..|+||
T Consensus       250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--------ePLvKiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIW  320 (545)
T KOG1272|consen  250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--------EPLVKILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIW  320 (545)
T ss_pred             cCCccchhhcCCccceEEEcCCCceEEecCCCCc--------chHHHHHhcCCCcceEEECCC-CcEEeecccccceeEe
Confidence            4678888889999999999999999999998875        4443 4478999999999999 9999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeec
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      |++.-..+.++.. ..+...++||.
T Consensus       321 DlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  321 DLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             eeccccccceeec-CCCcccccccc
Confidence            9998776666654 45677788886

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.35  E-value=1.8e-05  Score=75.74  Aligned_cols=48  Identities=27%  Similarity=0.695  Sum_probs=39.7

Q ss_pred             CCCCccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           48 ELDKDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .+.|.-+||||++.+.+-+    ++.|-|+|...|+.+|+.  .+||+||....
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence            3455668999999998764    568999999999999975  58999997665

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2e-07  Score=83.06  Aligned_cols=48  Identities=33%  Similarity=0.803  Sum_probs=40.7

Q ss_pred             CCccccccccchhhhcccc-CCCCccchhhHHhhhcC--CCCCCCCCCcCc
Q 048199           50 DKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN--KSDCPCCGHYLT   97 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~~~   97 (495)
                      ....+||+|++.++.|.+. +|||.||+.||......  ..+||.|+..+.
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4567899999999999855 79999999999976554  479999999875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.35  E-value=3.4e-06  Score=88.28  Aligned_cols=102  Identities=15%  Similarity=0.211  Sum_probs=88.6

Q ss_pred             EEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee
Q 048199          383 EFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM  462 (495)
Q Consensus       383 ~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~  462 (495)
                      -++++.-++++|+.-+.|.+|+....       ..++...+|.+.|.++.|+-| |.+++|.|.|.++++|++.+++.+.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~d-------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHED-------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             eccCcEEEEEeccccccEEEEecccc-------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC
Confidence            34556668999999999999999843       345567799999999999999 9999999999999999999987766


Q ss_pred             -ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          463 -EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       463 -~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       +.-+|+.+||.++|.| +  .++|++.|.+.++
T Consensus       212 ~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  212 CTGFGHSARVWACCFLP-N--RIITVGEDCTCRV  242 (967)
T ss_pred             cccccccceeEEEEecc-c--eeEEeccceEEEE
Confidence             7779999999999998 5  9999999988763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.32  E-value=9.1e-07  Score=89.05  Aligned_cols=134  Identities=25%  Similarity=0.369  Sum_probs=103.1

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCC
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRS  426 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~  426 (495)
                      ...+|.+...+....-..+.     ||+..|+++.|+| +...+++++.|..+..||+++.       +.++..+. -..
T Consensus        92 kaiiwnlA~ss~~aIef~lh-----ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------~~p~ys~~~w~s  159 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLH-----GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------HRPFYSTSSWRS  159 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEe-----cCccceeccccCCCCCcceeeccccccceeeeccCC-------Ccceeeeecccc
Confidence            34588876543333233333     8999999999998 4568999999999999999997       56666553 345


Q ss_pred             CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....++|+-.+++.+++. ....|.+||.+.| .++..+++|...|++++|+..-...+.+.+.|++|+.
T Consensus       160 ~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  160 AASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             cCceeeecccCcchhhhc-cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            567899987757666655 4568999999875 6889999999999999998644567889999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.31  E-value=1.4e-06  Score=82.13  Aligned_cols=85  Identities=16%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +.||-+.+++++|+||+++++|+..|..|||-.+...      ..-....++|..-|..++.-++  ..|+||+.|++|+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc------cchhhhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            4489999999999999999999999999999888764      0112244578888999998865  4689999999999


Q ss_pred             EEeCCCCcceeec
Q 048199          452 VWDVTTQQSVMEY  464 (495)
Q Consensus       452 iwd~~~~~~~~~~  464 (495)
                      +||+.+|+++.++
T Consensus       219 ~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  219 LWDITSGKLLDTC  231 (390)
T ss_pred             EEecccCCccccc
Confidence            9999999887665

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.31  E-value=5.6e-07  Score=80.79  Aligned_cols=62  Identities=31%  Similarity=0.707  Sum_probs=47.6

Q ss_pred             cccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCC-cCccCCCcchHHHHHHHHHH
Q 048199           53 MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGH-YLTNNQLYPNFLLDKLLKKT  114 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~-~~~~~~l~~n~~l~~~v~~~  114 (495)
                      |.||.|..++++|+-+ .|||+||..||...+-. .+.||.|.+ .+-++.|.+.+....-|+.+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~  339 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKA  339 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHH
Confidence            8999999999999977 58999999999976554 479999975 34456677766554444444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.31  E-value=2.8e-06  Score=83.40  Aligned_cols=142  Identities=18%  Similarity=0.277  Sum_probs=104.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccc-cccC-----CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGD-IFHS-----ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~-~~~h-----~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      ...++.|..++.|..||...-+...   .+..+. +..|     ...|+++.|+.+|-.++.|..+|.|.|||+++.   
T Consensus       187 hgLla~Gt~~g~VEfwDpR~ksrv~---~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~---  260 (703)
T KOG2321|consen  187 HGLLACGTEDGVVEFWDPRDKSRVG---TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS---  260 (703)
T ss_pred             cceEEecccCceEEEecchhhhhhe---eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC---
Confidence            3446778889999999985333322   222211 1122     446999999999999999999999999999986   


Q ss_pred             CCCcCCCeeecCC--CCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          412 PADVHCPVVEMPT--RSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       412 ~~~~~~~~~~~~~--~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                           .|...-.|  .-+|..+.|.+.+ ++.++|.+ ...++|||-.+|.....+.. +..++.+|+-| ++.++++|-
T Consensus       261 -----~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p-~sGm~f~An  332 (703)
T KOG2321|consen  261 -----KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVP-GSGMFFTAN  332 (703)
T ss_pred             -----CceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeec-CCceEEEec
Confidence                 55554444  3478999997652 34566654 57899999999999888875 44599999999 888999987


Q ss_pred             CCCcE
Q 048199          489 DDCKV  493 (495)
Q Consensus       489 ~D~~v  493 (495)
                      .+..+
T Consensus       333 e~~~m  337 (703)
T KOG2321|consen  333 ESSKM  337 (703)
T ss_pred             CCCcc
Confidence            76654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.30  E-value=2.5e-07  Score=77.92  Aligned_cols=46  Identities=35%  Similarity=0.872  Sum_probs=41.8

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .+.|.||...|..||.+.|||.||..|..+-.+....|-+|++...
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence            4789999999999999999999999999888777889999998753

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.8e-07  Score=89.42  Aligned_cols=52  Identities=31%  Similarity=0.825  Sum_probs=47.1

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+..++.|-||...+.+|+++||||+||..||.+.+.....||.||.++..
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            3457789999999999999999999999999999988888899999998764

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.28  E-value=4.1e-07  Score=66.93  Aligned_cols=48  Identities=27%  Similarity=0.667  Sum_probs=38.0

Q ss_pred             Cccccccccchhhh------------cc-ccCCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199           51 KDMLCPICMQIIKE------------AF-LTACGHSFCYMCIITHLRNK---SDCPCCGHYLTN   98 (495)
Q Consensus        51 ~~l~C~IC~~~~~~------------Pv-~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~   98 (495)
                      ++-.|+||...|.-            |+ .-.|+|.|...||.+|++.+   +.||.||++...
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            35668888888862            33 34799999999999999864   699999998653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.28  E-value=1.1e-05  Score=79.11  Aligned_cols=136  Identities=10%  Similarity=0.075  Sum_probs=84.3

Q ss_pred             hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCC
Q 048199          346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPT  424 (495)
Q Consensus       346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~  424 (495)
                      .+..+.+|++........+....      ..+....+.|+|++++|++++. ++.|.+|+++.....    ...+....+
T Consensus        55 ~~~~i~~~~~~~~g~l~~~~~~~------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~~~~  124 (330)
T PRK11028         55 PEFRVLSYRIADDGALTFAAESP------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP----VAPIQIIEG  124 (330)
T ss_pred             CCCcEEEEEECCCCceEEeeeec------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC----CCceeeccC
Confidence            34566677774212222222222      1234678999999998887764 889999999743100    112222223


Q ss_pred             CCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCccee-------ecccccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199          425 RSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVM-------EYEEHEKRAWSVDFSRTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       425 ~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~-------~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~  494 (495)
                      .....+++|+|+ +.++ ++...++.|.+||+.+...+.       .+.. ......++|+| +|.+++++.. +++|.
T Consensus       125 ~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~  200 (330)
T PRK11028        125 LEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVD  200 (330)
T ss_pred             CCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEE
Confidence            345678899999 6666 556667999999997632221       1111 23456799999 9999887775 77664

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.8e-07  Score=83.40  Aligned_cols=46  Identities=28%  Similarity=0.658  Sum_probs=41.1

Q ss_pred             cccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc
Q 048199           53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~   98 (495)
                      -.|+||+....-|+.++|+|.||+-||+...... ..||+||.++..
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            4599999999999999999999999999877665 469999999864

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.8e-07  Score=82.27  Aligned_cols=47  Identities=28%  Similarity=0.632  Sum_probs=40.1

Q ss_pred             Cccccccccchhhhc---cccCCCCccchhhHHhhhc-CCCCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLR-NKSDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~   97 (495)
                      ....|.||++-|..-   +.+||-|.|+..|+++|+. ...+||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            347899999999732   4889999999999999998 4579999998874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.25  E-value=1.2e-05  Score=78.81  Aligned_cols=138  Identities=11%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEE-eCCCcEEEEEccccccCCCCcCCCeeec
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVNEPADVHCPVVEM  422 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~  422 (495)
                      ...|+++.+|++....+...+..+..      .+....+.|+|++++|+.+ ..++.|.+|+++.. ..+    ......
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~~------~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l----~~~~~~   76 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVDV------PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GAL----TFAAES   76 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEec------CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-Cce----EEeeee
Confidence            34567888999843233334444432      3446678999999987665 45889999999732 000    111222


Q ss_pred             CCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCC-Cc---ceeecccccCcEEEEEeecCCCCeEEEee-CCCcEeC
Q 048199          423 PTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTT-QQ---SVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKVLY  495 (495)
Q Consensus       423 ~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~-~~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~l  495 (495)
                      ...+....+.|+|+ +.+|++++ .++.|.+||+.+ +.   .+..+.+ ......++|+| ++.++++++ .++.|.+
T Consensus        77 ~~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p-~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         77 PLPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP-DNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             cCCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC-CCCEEEEeeCCCCEEEE
Confidence            23345678999999 77777665 488999999964 32   2333332 23467788999 888875554 5677653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=1.7e-06  Score=79.86  Aligned_cols=118  Identities=22%  Similarity=0.306  Sum_probs=91.3

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +..+-|.++.|+..+++++.|...|.|..+|++..   .++...+...+.|.+.|+++..-..++.+|++.+.+|+|++|
T Consensus       250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r---nqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR---NQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             ccchhHHHHHhcccCCeeEecccCCcEEEEEeeec---ccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            34678889999999999999999999999999876   122345667778999999988766338899999999999999


Q ss_pred             eCCCCcc---eeecccccCcEEE--EEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQS---VMEYEEHEKRAWS--VDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~---~~~~~~h~~~v~~--v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |.+.-++   +.++.||-..-.-  +...+ ....++++++|...||
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRI  372 (425)
T ss_pred             eehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEE
Confidence            9987555   9999999543222  23445 4567788888887664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.23  E-value=1.7e-06  Score=55.17  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          458 QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       458 ~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++++.++.+|.+.|++++|+| ++.+|+||+.|++|+|
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~v   37 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRV   37 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEE
Confidence            357889999999999999999 9999999999999985

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=4.9e-06  Score=84.50  Aligned_cols=107  Identities=12%  Similarity=0.003  Sum_probs=73.4

Q ss_pred             cCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .|...+.+..|+|+|+.|+.++ .++.+.||+++...       .......+..  ....|+|+ +..|+.++.++ +.+
T Consensus       289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~-------~~~~~l~~~~--~~~~~SpD-G~~ia~~~~~~-i~~  357 (429)
T PRK01742        289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG-------GGASLVGGRG--YSAQISAD-GKTLVMINGDN-VVK  357 (429)
T ss_pred             cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC-------CCeEEecCCC--CCccCCCC-CCEEEEEcCCC-EEE
Confidence            4556788999999999766544 67889999886531       1111222322  45789999 77887777665 555


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ||+.++........+  ...++.|+| ||.+|+.++.++.++
T Consensus       358 ~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~  396 (429)
T PRK01742        358 QDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGK  396 (429)
T ss_pred             EECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCce
Confidence            999887654322222  235678999 999999999887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.20  E-value=1.6e-05  Score=80.98  Aligned_cols=105  Identities=13%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEEecCCCc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGV---SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~sg~~dg~  449 (495)
                      .|...+.+..|+|||+.|+..+.   +..|.+||+.++        .......+.+.+....|+|| +.. +++.+.+|.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~  269 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------QRELVGNFPGMTFAPRFSPD-GRKVVMSLSQGGN  269 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--------cEEEeecCCCcccCcEECCC-CCEEEEEEecCCC
Confidence            56778999999999998887653   468999999876        11122234456678899999 654 456666665


Q ss_pred             --EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          450 --VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       450 --v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                        |.+||+.++.. ..+..+........|+| ||..|+..+.
T Consensus       270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~  309 (435)
T PRK05137        270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESD  309 (435)
T ss_pred             ceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEEC
Confidence              77778886654 45666666677899999 9998887764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.16  E-value=2.9e-06  Score=75.49  Aligned_cols=68  Identities=22%  Similarity=0.452  Sum_probs=61.1

Q ss_pred             CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       426 ~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ..|.+++-||...+++++|+.||.+-+||.+... ++..+..|+..||.|-|+|.++..|++++.||.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence            4489999999978899999999999999999864 5567789999999999999999999999999976

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.15  E-value=1e-05  Score=86.08  Aligned_cols=152  Identities=11%  Similarity=0.127  Sum_probs=101.2

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccc-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIF-HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +.+++|++|++|++|+..+.....  .+.+..... --.+.+..+.+.+.++.||.++.||.|++.+++...... ....
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~~~~ 1138 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-RVAT 1138 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-ceee
Confidence            568899999999999975432221  111110000 135788999999999999999999999999998730000 0000


Q ss_pred             Cee--ecCCCCC-eEEEEEcCCCCC-EEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          418 PVV--EMPTRSK-LSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       418 ~~~--~~~~~~~-i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ...  .....+. +..-+|....+. .++.+...+.|..||+++...+.+++.  ..+.|++++.+| .+.+++.|+.-|
T Consensus      1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRG 1217 (1431)
T ss_pred             eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCc
Confidence            000  1112222 333344433344 788888899999999998766655543  357899999999 999999999888


Q ss_pred             cEe
Q 048199          492 KVL  494 (495)
Q Consensus       492 ~v~  494 (495)
                      .+-
T Consensus      1218 ~l~ 1220 (1431)
T KOG1240|consen 1218 QLV 1220 (1431)
T ss_pred             eEE
Confidence            753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.14  E-value=4.7e-06  Score=80.31  Aligned_cols=115  Identities=17%  Similarity=0.296  Sum_probs=93.7

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee--cCCCCCeEEEEEcCCC-CCEEEEecCCC
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE--MPTRSKLSCLSWNKFS-KNRIASSDYEG  448 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~-~~~l~sg~~dg  448 (495)
                      +.+|.+.|..|.|+..|..|++||.|..|.+||+...        .+...  -+|...|....|-|.. ...|++.+.||
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            3389999999999999999999999999999999987        22222  2566777778887763 45789999999


Q ss_pred             cEEEEeCCC-C--cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          449 IVTVWDVTT-Q--QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       449 ~v~iwd~~~-~--~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .|++=-+.. +  +....+..|.++|..++.-|..++.|.|++.|+.|+
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~  258 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF  258 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCccccccccccee
Confidence            999887653 3  234566779999999999997888999999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=1.8e-05  Score=80.30  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=74.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~  449 (495)
                      .+...+.+.+|+|+|+.|+..+.+   ..|.+||+.++        .........+.+....|+|| +..| ++.+.+|.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g--------~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~  263 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG--------RRRVVANFKGSNSAPAWSPD-GRTLAVALSRDGN  263 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC--------CEEEeecCCCCccceEECCC-CCEEEEEEccCCC
Confidence            456778999999999988877643   35999999876        11112223345668899999 6555 56788888


Q ss_pred             EEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          450 VTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       450 v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..||.+. .+.....+..|........|+| ||..|+..+.
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~  303 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSD  303 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEec
Confidence            7777653 2333555665666667789999 9998877664

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.13  E-value=5.5e-05  Score=67.28  Aligned_cols=50  Identities=32%  Similarity=0.702  Sum_probs=36.9

Q ss_pred             cccccccchhh-hcc-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199           53 MLCPICMQIIK-EAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        53 l~C~IC~~~~~-~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n  104 (495)
                      ..|-.|+-... +|. ++.|+|+||..|..-...  ..||.|++++....+..+
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeeeecccc
Confidence            46887776665 343 679999999999876432  389999999876555544

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=6.6e-07  Score=92.76  Aligned_cols=46  Identities=30%  Similarity=0.731  Sum_probs=42.5

Q ss_pred             ccccccccchhhh-----ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           52 DMLCPICMQIIKE-----AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~~-----Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ...|+||.+.+..     |..++|||.||..|+..|++...+||.||..+.
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            5789999999998     789999999999999999999999999999543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=2.4e-05  Score=79.56  Aligned_cols=105  Identities=18%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCC-
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEG-  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg-  448 (495)
                      .|...+.+..|+|+|+.|+..+.+   ..|.+||+.++        .........+...+..|+|| +..| ++.+.+| 
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--------~~~~l~~~~g~~~~~~~SpD-G~~l~~~~s~~g~  271 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--------QRELVASFRGINGAPSFSPD-GRRLALTLSRDGN  271 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC--------CEEEeccCCCCccCceECCC-CCEEEEEEeCCCC
Confidence            456678999999999998887643   46999999876        11111122334557899999 6544 5656565 


Q ss_pred             -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       .|.+||+.++.. ..+..|.......+|+| ||..|+.++.
T Consensus       272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd  311 (433)
T PRK04922        272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSD  311 (433)
T ss_pred             ceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEEC
Confidence             599999987764 44555655567889999 9998887764

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=6e-05  Score=72.45  Aligned_cols=62  Identities=27%  Similarity=0.516  Sum_probs=52.4

Q ss_pred             cccccccchhhh------ccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc-----CCCcchHHHHHHHHHH
Q 048199           53 MLCPICMQIIKE------AFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-----NQLYPNFLLDKLLKKT  114 (495)
Q Consensus        53 l~C~IC~~~~~~------Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-----~~l~~n~~l~~~v~~~  114 (495)
                      +.|-||.+.|..      |..|.|||+||..|+.+.+... ..||.||.+...     ..|.+||.+...+...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            579999999973      8899999999999999998876 478999999543     3588999988888775

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1e-06  Score=79.65  Aligned_cols=45  Identities=27%  Similarity=0.723  Sum_probs=41.9

Q ss_pred             cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      +.|-||...|.+||.+.|||.||..|..+.++....|++|.+.+.
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence            459999999999999999999999999999988899999998764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=98.08  E-value=2.2e-06  Score=84.62  Aligned_cols=69  Identities=38%  Similarity=0.854  Sum_probs=54.6

Q ss_pred             cCCCCccccccccchhhhccc-cCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc-hHHHHHHHHHHh
Q 048199           47 SELDKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP-NFLLDKLLKKTS  115 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~-n~~l~~~v~~~~  115 (495)
                      ..+++.+.|+||..++.+|+. +.|||.||..|+..|....+.||.|+.........+ .......+.++.
T Consensus        16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (391)
T KOG0297|consen   16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLP   86 (391)
T ss_pred             CCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence            346888999999999999998 599999999999999999899999998887654443 333344444433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.06  E-value=8e-06  Score=72.77  Aligned_cols=74  Identities=14%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ..|.+++-|| ..+++++|+.||.+-+||.+..       ..|+..+ .|...++.+-|||.++..|++++.||.+..||
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc-------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            4499999999 5567888999999999999986       3444333 68889999999999999999999999999999


Q ss_pred             CCC
Q 048199          455 VTT  457 (495)
Q Consensus       455 ~~~  457 (495)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=5.8e-05  Score=76.58  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=72.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE-EecCCC-
Q 048199          374 HSANIVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA-SSDYEG-  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-sg~~dg-  448 (495)
                      .+...+.+..|+|||+.|+..+   .+..|.+||+.++        .........+.+....|+|| +..|+ +.+.+| 
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--------~~~~l~~~~~~~~~~~~SPD-G~~La~~~~~~g~  266 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASFPRHNGAPAFSPD-GSKLAFALSKTGS  266 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------CeEEccCCCCCcCCeEECCC-CCEEEEEEcCCCC
Confidence            3456789999999999888654   2457999999876        11111112233456899999 66555 445455 


Q ss_pred             -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                       .|.+||+.++.... +..+...+....|+| ||..|+..+.+
T Consensus       267 ~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~  307 (429)
T PRK03629        267 LNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQ  307 (429)
T ss_pred             cEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCC
Confidence             48899998776543 444445678899999 99988777754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=4.2e-05  Score=71.75  Aligned_cols=49  Identities=24%  Similarity=0.651  Sum_probs=36.2

Q ss_pred             cccccccchhhhcc----ccCCCCccchhhHHhhhcCCC---CCCCCCCcCccCCC
Q 048199           53 MLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKS---DCPCCGHYLTNNQL  101 (495)
Q Consensus        53 l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~---~CP~Cr~~~~~~~l  101 (495)
                      -.|.||-+.+-+-.    +-.|||+|.-.|+..|+...+   .||+|+-.+..+.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~   60 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV   60 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence            35999976664432    335999999999999999764   69999955544433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.02  E-value=5.1e-05  Score=75.67  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ...+.|.+.+++|+...|+.|+.||+|.+||...+.       .  ......-.++.++|||+ |.+|+.|+.-|.+.+|
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t--~~~ka~~~P~~iaWHp~-gai~~V~s~qGelQ~F  326 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------T--LLAKAEFIPTLIAWHPD-GAIFVVGSEQGELQCF  326 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------e--eeeeecccceEEEEcCC-CcEEEEEcCCceEEEE
Confidence            467889999999999999999999999999998761       1  11123345789999999 9999999999999999


Q ss_pred             eCC
Q 048199          454 DVT  456 (495)
Q Consensus       454 d~~  456 (495)
                      |+.
T Consensus       327 D~A  329 (545)
T PF11768_consen  327 DMA  329 (545)
T ss_pred             Eee
Confidence            975

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=6.3e-06  Score=80.49  Aligned_cols=120  Identities=14%  Similarity=0.266  Sum_probs=82.9

Q ss_pred             ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          371 DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      .+.||+..|+.+.--.+.+-|++++.|++|++|.++..........+......|..+|..+.|-.+ ..++++.  ||.|
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIASC--DGGI  806 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceeeec--cCcc
Confidence            344899999999887788899999999999999998763333333344455578889999999877 5566654  7999


Q ss_pred             EEEeCCCCcceeeccc---c--cCcEEEEEeecCCCCeEEEe-eCCCcEeC
Q 048199          451 TVWDVTTQQSVMEYEE---H--EKRAWSVDFSRTEPSMLVSG-SDDCKVLY  495 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~---h--~~~v~~v~~~~~~g~~l~s~-s~D~~v~l  495 (495)
                      ++||.--|+.+.....   |  .+.|.++-  .++..+++.| +...+||+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhhee
Confidence            9999888887765432   2  22333332  1133444444 55666664

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.2e-06  Score=57.25  Aligned_cols=45  Identities=29%  Similarity=0.714  Sum_probs=39.0

Q ss_pred             cccccccchhhhccccCCCCc-cchhhHHhhhc-CCCCCCCCCCcCc
Q 048199           53 MLCPICMQIIKEAFLTACGHS-FCYMCIITHLR-NKSDCPCCGHYLT   97 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~-~~~~CP~Cr~~~~   97 (495)
                      -.|.||.+-+.|.|.-.|||. .|+.|-.+.+. ....||.||+++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            469999999999999999997 49999888877 4579999999863

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=5.1e-05  Score=78.38  Aligned_cols=144  Identities=10%  Similarity=0.007  Sum_probs=99.2

Q ss_pred             cccccCcccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      .+.+..+++|..|+.+.+|.-.. .+.......++     .|...|.+++|+++|.+|+|||..+-+-+|.+.++.    
T Consensus       214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~----  284 (792)
T KOG1963|consen  214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK----  284 (792)
T ss_pred             ccccceEEEeccCCcEEEEeccccccccccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC----
Confidence            34556677888889999997422 11112233333     699999999999999999999999999999999982    


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-----------cCcEEEEEeecCCCC
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-----------EKRAWSVDFSRTEPS  482 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-----------~~~v~~v~~~~~~g~  482 (495)
                          +...-.-.++|..+.|+|| +.+.+....|..|.+-...+.....++.|-           .+-.+.++++| ...
T Consensus       285 ----kqfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~  358 (792)
T KOG1963|consen  285 ----KQFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTN  358 (792)
T ss_pred             ----cccccccCCeeEEEEEcCC-CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCC
Confidence                2222235678999999999 888888888999999887554433333321           23345566666 444


Q ss_pred             eEEEeeCCCcE
Q 048199          483 MLVSGSDDCKV  493 (495)
Q Consensus       483 ~l~s~s~D~~v  493 (495)
                      .++-.+..|+|
T Consensus       359 ~~vln~~~g~v  369 (792)
T KOG1963|consen  359 SLVLNGHPGHV  369 (792)
T ss_pred             ceeecCCCceE
Confidence            44444444443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.92  E-value=0.00015  Score=71.61  Aligned_cols=124  Identities=16%  Similarity=0.157  Sum_probs=78.8

Q ss_pred             hhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC
Q 048199          345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT  424 (495)
Q Consensus       345 ~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  424 (495)
                      .+++++.+.|..   ..+.+..+..+     ...-..+.|+|||++++.++.|+.|.++|+.+.        ..+..+..
T Consensus        13 ~~~~~v~viD~~---t~~~~~~i~~~-----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--------~~v~~i~~   76 (369)
T PF02239_consen   13 RGSGSVAVIDGA---TNKVVARIPTG-----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--------KVVATIKV   76 (369)
T ss_dssp             GGGTEEEEEETT---T-SEEEEEE-S-----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--------SEEEEEE-
T ss_pred             cCCCEEEEEECC---CCeEEEEEcCC-----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--------cEEEEEec
Confidence            344566666653   34456666542     222345779999999999999999999999997        34455555


Q ss_pred             CCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCC-eEEE
Q 048199          425 RSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPS-MLVS  486 (495)
Q Consensus       425 ~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~-~l~s  486 (495)
                      .....++++++| |.+++++. ..+.|.|+|..+.+.++.+...       ..++.++..++ ... ++++
T Consensus        77 G~~~~~i~~s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~  145 (369)
T PF02239_consen   77 GGNPRGIAVSPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVN  145 (369)
T ss_dssp             SSEEEEEEE--T-TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEE
T ss_pred             CCCcceEEEcCC-CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEE
Confidence            556789999999 77777665 6889999999999988887543       34677777777 444 4444

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.90  E-value=0.00012  Score=67.42  Aligned_cols=129  Identities=17%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc---CCCeee
Q 048199          346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV---HCPVVE  421 (495)
Q Consensus       346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~---~~~~~~  421 (495)
                      .|..|.+|++..   ..--..+.     .....+.++.|+|+|+ +|.+...|-.|.||.+.+....+..+   ......
T Consensus        69 k~~~vqvwsl~Q---pew~ckId-----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~  140 (447)
T KOG4497|consen   69 KDPKVQVWSLVQ---PEWYCKID-----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA  140 (447)
T ss_pred             ccceEEEEEeec---ceeEEEec-----cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE
Confidence            344677787642   12222233     2357788999999995 67788889999999998751110000   000000


Q ss_pred             cC----------------------------------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          422 MP----------------------------------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       422 ~~----------------------------------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      +.                                  ..-..+.+.|+|| |+.         +-|||.--.-.+.  .-|
T Consensus       141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~---------laVwd~~Leykv~--aYe  208 (447)
T KOG4497|consen  141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNW---------LAVWDNVLEYKVY--AYE  208 (447)
T ss_pred             ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-CcE---------EEEecchhhheee--eee
Confidence            00                                  0012345566666 433         4456532111111  223


Q ss_pred             -cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          468 -EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       468 -~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .-.+..++|+| .+.+|+.|+.|+.+||
T Consensus       209 ~~lG~k~v~wsP-~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  209 RGLGLKFVEWSP-CNQFLAVGSYDQMLRV  236 (447)
T ss_pred             eccceeEEEecc-ccceEEeeccchhhhh
Confidence             24688999999 9999999999999875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.90  E-value=0.00011  Score=74.38  Aligned_cols=105  Identities=16%  Similarity=0.061  Sum_probs=72.4

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCC-
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEG-  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg-  448 (495)
                      .+...+.+..|+|+|++|+.++.+   ..|.+||+.++        .......+.+.+.++.|+|| +. ++++.+.++ 
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--------~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~  257 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--------QREKVASFPGMNGAPAFSPD-GSKLAVSLSKDGN  257 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--------CEEEeecCCCCccceEECCC-CCEEEEEECCCCC
Confidence            455678899999999998877654   47999999876        11122223445667899999 55 445665555 


Q ss_pred             -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       .|.+||+.++.. ..+..+........|+| +|..|+..+.
T Consensus       258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~  297 (417)
T TIGR02800       258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSD  297 (417)
T ss_pred             ccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEEC
Confidence             588899887643 34444555556778999 9988876664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.89  E-value=1.1e-05  Score=73.64  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEcccc-c----cC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASV-V----NE  411 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~-~----~~  411 (495)
                      .+.+. ..+|..+.+|.+.-.+..-.+.+++...+..-+..|++..||| ..+.|...+..|.|++-|++.. .    ..
T Consensus       184 ~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         184 KETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             hheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            34444 4478899999987666666778887544333456789999999 5667888888999999999853 0    00


Q ss_pred             -CCCcCCCe---eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeeccccc------------CcE---
Q 048199          412 -PADVHCPV---VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHE------------KRA---  471 (495)
Q Consensus       412 -~~~~~~~~---~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~------------~~v---  471 (495)
                       +.....++   ....-.+.|..+.|++. |.+|++-++ -+|+|||++. ..++.++.-|.            +.|   
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~n-gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDN-GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCC-CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence             00000000   01112346888999998 899999987 4999999985 45677765442            223   


Q ss_pred             EEEEeecCCCCeEEEeeCCCc
Q 048199          472 WSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       472 ~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      ..+.|+. +...++|||+...
T Consensus       341 FeisfSg-d~~~v~sgsy~NN  360 (460)
T COG5170         341 FEISFSG-DDKHVLSGSYSNN  360 (460)
T ss_pred             EEEEecC-Ccccccccccccc
Confidence            3467787 7788888887543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.85  E-value=5.7e-05  Score=71.48  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-cccc
Q 048199          390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHE  468 (495)
Q Consensus       390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~  468 (495)
                      ....++....+.+|....+        .....++|-+.++.++|+|| +.+|++++.|..|+|-.......+.+| -||+
T Consensus       124 v~dkagD~~~~di~s~~~~--------~~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH~  194 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSG--------RCEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGHK  194 (390)
T ss_pred             EEeecCCceeeeeeccccc--------CcchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecCcccchhhhccccH
Confidence            3334555566666666544        45566789999999999999 899999999999999887655555554 5899


Q ss_pred             CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          469 KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .-|..++.-+  ++.|+|||.|++|++
T Consensus       195 eFVS~isl~~--~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  195 EFVSTISLTD--NYLLLSGSGDKTLRL  219 (390)
T ss_pred             hheeeeeecc--CceeeecCCCCcEEE
Confidence            9999999875  577999999999985

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.00024  Score=70.07  Aligned_cols=101  Identities=15%  Similarity=0.352  Sum_probs=80.2

Q ss_pred             CCcEEEEEEccCCCEEE--EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcE
Q 048199          376 ANIVSSIEFDRDDQLFA--TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~--s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v  450 (495)
                      .++|.++.|+|++.-|+  .|-+--++.|||++..         ++..+ ..++-+++-|+|. |++|+-++.   -|.|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df-~egpRN~~~fnp~-g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDF-PEGPRNTAFFNPH-GNIILLAGFGNLPGDM  338 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeC-CCCCccceEECCC-CCEEEEeecCCCCCce
Confidence            78999999999998655  4567789999999874         44444 3456788999999 888877664   4689


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      -|||+.+.+++..+..-.  .+-+.|+| ||.+|+|+...
T Consensus       339 EvwDv~n~K~i~~~~a~~--tt~~eW~P-dGe~flTATTa  375 (566)
T KOG2315|consen  339 EVWDVPNRKLIAKFKAAN--TTVFEWSP-DGEYFLTATTA  375 (566)
T ss_pred             EEEeccchhhccccccCC--ceEEEEcC-CCcEEEEEecc
Confidence            999999988888887543  44578999 99999998754

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=9.5e-06  Score=71.14  Aligned_cols=53  Identities=19%  Similarity=0.400  Sum_probs=46.5

Q ss_pred             Cccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199           51 KDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP  103 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~  103 (495)
                      ....||||.+.+++.+    .-+|||+||+.|.++++..-..||+|.+++..++++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence            3568999999999864    3389999999999999999999999999999888654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=9.8e-05  Score=72.87  Aligned_cols=110  Identities=12%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCCCc
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      ..+.++++..++-..+|++|+.||.|-+||.+..... ...........+.+     .|+++.|+.+ |..++.|..+|.
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv-~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~  251 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV-GTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGS  251 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhhhh-eeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCc
Confidence            3588999999998889999999999999999875110 00001111111222     4999999988 999999999999


Q ss_pred             EEEEeCCCCcceeecc-cccCcEEEEEeecCC-CCeEEE
Q 048199          450 VTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTE-PSMLVS  486 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~-g~~l~s  486 (495)
                      |.|||+++.+++..-. +..-+|..+.|.+.+ ...++|
T Consensus       252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S  290 (703)
T KOG2321|consen  252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS  290 (703)
T ss_pred             EEEEEcccCCceeecccCCccceeeecccccCCCceEEe
Confidence            9999999887765432 335688899997732 234444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=7.4e-05  Score=70.41  Aligned_cols=124  Identities=13%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..++++..-+.+++||..  ..-+++..+..     -..+|+++...|.++++++|..-+.+..||++.+       ...
T Consensus       217 ~~fat~T~~hqvR~YDt~--~qRRPV~~fd~-----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-------kl~  282 (412)
T KOG3881|consen  217 YKFATITRYHQVRLYDTR--HQRRPVAQFDF-----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-------KLL  282 (412)
T ss_pred             ceEEEEecceeEEEecCc--ccCcceeEecc-----ccCcceeeeecCCCcEEEEecccchhheecccCc-------eee
Confidence            334455555577777764  22345555542     2578999999999999999999999999999987       222


Q ss_pred             ee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199          419 VV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       419 ~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      .. .-+..+.|+++.-||. ..++++++.|..|+|+|+.+...+.... -...+++|-+.+
T Consensus       283 g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~  341 (412)
T KOG3881|consen  283 GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD  341 (412)
T ss_pred             ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence            22 2245678999999998 8899999999999999999865554332 133456666644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.77  E-value=3.8e-05  Score=84.86  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ..-.+.+|+.|+.+++|...   ....+...++    ...+.|+.+.|+.+|+.+..+..||.+.+|.+...        
T Consensus      2219 ~~~~Yltgs~dgsv~~~~w~---~~~~v~~~rt----~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-------- 2283 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWG---HGQQVVCFRT----AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-------- 2283 (2439)
T ss_pred             CCceEEecCCCceEEEEecc---CCCeEEEeec----cCcchhhhhhhcccCCceeeeccCCceeecccCCc--------
Confidence            34557899999999999874   3344555554    22488999999999999999999999999999843        


Q ss_pred             CCeeec-CCCCCeEEEEEcCCCCCEEEEec---CCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          417 CPVVEM-PTRSKLSCLSWNKFSKNRIASSD---YEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       417 ~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~---~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       +.... .|....+.+.|-   +..+++++   .++.+.+||...   ...+.  ..|.+.++++++.| ...+|+|||.
T Consensus      2284 -~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2284 -PYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred             -ceeccccCCccccceeee---ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCC
Confidence             33333 456667777776   45666654   577899999753   22333  77999999999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      +|.|+|
T Consensus      2357 ~G~v~l 2362 (2439)
T KOG1064|consen 2357 KGEVCL 2362 (2439)
T ss_pred             cCcEEE
Confidence            999975

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.00025  Score=72.28  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeC-CC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc-
Q 048199          375 SANIVSSIEFDRDDQLFATAGV-SR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI-  449 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~-  449 (495)
                      +...+.+..|+|||+.|+..+. ++  .|.+||+.++        .........+......|+|| +..| ++.+.+|. 
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--------~~~~lt~~~g~~~~~~wSPD-G~~La~~~~~~g~~  286 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--------VREKVTSFPGINGAPRFSPD-GKKLALVLSKDGQP  286 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC--------CeEEecCCCCCcCCeeECCC-CCEEEEEEeCCCCe
Confidence            4567889999999998886654 33  4788888775        11111111223346899999 6654 55666775 


Q ss_pred             -EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          450 -VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       450 -v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       |.+||+.++.. ..+..+.......+|+| ||..|+..+.
T Consensus       287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~  325 (448)
T PRK04792        287 EIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSE  325 (448)
T ss_pred             EEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEEC
Confidence             77778876653 44555555667889999 8888766554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.00031  Score=71.52  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=71.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE-EecCCC-
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA-SSDYEG-  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-sg~~dg-  448 (495)
                      .+...+....|+|+|+.|+..+.+   ..|.+||+.++        .........+......|+|| +..|+ +.+.+| 
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--------~~~~l~~~~g~~~~~~~SpD-G~~la~~~~~~g~  266 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--------RREQITNFEGLNGAPAWSPD-GSKLAFVLSKDGN  266 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--------CEEEccCCCCCcCCeEECCC-CCEEEEEEccCCC
Confidence            456778999999999988776543   35888899876        11111112233456899999 66554 565555 


Q ss_pred             -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       .|.+||+.++.. ..+..+........|+| ||..|+..+.
T Consensus       267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp-Dg~~i~f~s~  306 (430)
T PRK00178        267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGK-DGRTLYFTSD  306 (430)
T ss_pred             ceEEEEECCCCCe-EEcccCCCCcCCeEECC-CCCEEEEEEC
Confidence             588889987654 34555555667789999 8887766553

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=6.3e-06  Score=73.26  Aligned_cols=54  Identities=28%  Similarity=0.654  Sum_probs=43.5

Q ss_pred             Cccccccccchhhhc----------cccCCCCccchhhHHhhhcC--CCCCCCCCCcCccCCCcch
Q 048199           51 KDMLCPICMQIIKEA----------FLTACGHSFCYMCIITHLRN--KSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P----------v~l~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~n  104 (495)
                      ++-.|.||+..+..-          ..|.|+|+|..-||..|.--  .++||.|++.+....++.|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            455799999988643          36799999999999999653  4699999999987666655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.71  E-value=0.00056  Score=68.41  Aligned_cols=108  Identities=14%  Similarity=0.251  Sum_probs=76.0

Q ss_pred             EEEEEEcc-CCCEEEEE----eCCCc----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          379 VSSIEFDR-DDQLFATA----GVSRR----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       379 V~~l~~~p-~~~~l~s~----s~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      ..++.|+- ++..+.|.    +.+|.    ..+|++...  .+  ....+..+...+.+.+++++|+ ...++.|+.||+
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~--kl--qrvsvtsipL~s~v~~ca~sp~-E~kLvlGC~DgS  282 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN--KL--QRVSVTSIPLPSQVICCARSPS-EDKLVLGCEDGS  282 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC--ce--eEEEEEEEecCCcceEEecCcc-cceEEEEecCCe
Confidence            35677775 44444443    22333    445655443  11  1234566678889999999999 899999999999


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |.+||...+...  +..+.-.++.++|+| +|.++++|+.-|.+.
T Consensus       283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ  324 (545)
T PF11768_consen  283 IILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQ  324 (545)
T ss_pred             EEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEE
Confidence            999998766332  333445678899999 999999999988764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=6.5e-05  Score=73.61  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=95.2

Q ss_pred             cccCcccchhhHHhhhhhhhcccCce----EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLR----VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~----~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      +...+.+++.|++|++|.+..-....    ..++..     .|+.+|.++.|-.+-++++++  |+-|.+||.-.+    
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-----aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig----  814 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-----AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG----  814 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhh-----hccCcccceeeeeccceeeec--cCcceeeccccc----
Confidence            34668899999999999985332211    223333     799999999999888888766  889999997665    


Q ss_pred             CCcCCCeeec---CCC---CCeEEEEEcCCCCCEEEEe-cCCCcEEEEeCCCCcceeecc-----cccCcEEEEEeecCC
Q 048199          413 ADVHCPVVEM---PTR---SKLSCLSWNKFSKNRIASS-DYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTE  480 (495)
Q Consensus       413 ~~~~~~~~~~---~~~---~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~  480 (495)
                          .+...+   ...   +.|.++. +-+ ..++..| +...+|+++|.+.+.-+..++     +....+.+++..+ .
T Consensus       815 ----r~Laq~~dapk~~a~~~ikcl~-nv~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~  887 (1034)
T KOG4190|consen  815 ----RLLAQMEDAPKEGAGGNIKCLE-NVD-RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-K  887 (1034)
T ss_pred             ----chhHhhhcCcccCCCceeEecc-cCc-chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-C
Confidence                111111   111   2233332 212 4444444 788899999999887555443     3456788999998 8


Q ss_pred             CCeEEEeeCCCcEe
Q 048199          481 PSMLVSGSDDCKVL  494 (495)
Q Consensus       481 g~~l~s~s~D~~v~  494 (495)
                      |++++.|=.+|+|-
T Consensus       888 GN~lAa~LSnGci~  901 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIA  901 (1034)
T ss_pred             cchhhHHhcCCcEE
Confidence            99998887777764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.66  E-value=1.8e-05  Score=76.82  Aligned_cols=51  Identities=24%  Similarity=0.653  Sum_probs=44.3

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcC-----CCCCCCCCCcCccCC
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-----KSDCPCCGHYLTNNQ  100 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~  100 (495)
                      ..+..|.+|.+.-.|++...|.|+||+.||..|+..     +.+||.|-..++.+.
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            456789999999999999999999999999988764     248999999988753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.00056  Score=69.42  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             CcEEEEEEccCCCEEEEE-eCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEE
Q 048199          377 NIVSSIEFDRDDQLFATA-GVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~-s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~i  452 (495)
                      +.+.+..|+|||+.|+.. +.++  .|.+||+.++        .......+...+....|+|| +..|+..+ .+|...|
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg--------~~~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~I  313 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--------QIRQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQV  313 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC--------CEEEccCCCCCcCceEECCC-CCEEEEEeCCCCCceE
Confidence            335568999999977754 4454  4888898775        12222233445778999999 76665444 4455555


Q ss_pred             E--eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          453 W--DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       453 w--d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      |  |+.++.. ..+..+........|+| ||.+|+..+.+
T Consensus       314 y~~d~~~g~~-~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~  351 (429)
T PRK03629        314 YKVNINGGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSN  351 (429)
T ss_pred             EEEECCCCCe-EEeecCCCCccCEEECC-CCCEEEEEEcc
Confidence            5  6655543 34444444566789999 99988776643

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.5e-05  Score=73.17  Aligned_cols=52  Identities=27%  Similarity=0.663  Sum_probs=44.9

Q ss_pred             ccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199           52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP  103 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~  103 (495)
                      .-.||||+..-.+|..+ ..|.+||+.||-.|..+.+.||+.+.+....++++
T Consensus       300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r  352 (357)
T KOG0826|consen  300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR  352 (357)
T ss_pred             cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHH
Confidence            34699999999999866 56999999999999999999999999987665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.64  E-value=0.00059  Score=73.31  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .|.+.|..++.++ ++.+|+|||.||+||+||.+.........++........+.+.++.+-+. ++.+|.|+.||.|++
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEEcCCCeEEE
Confidence            5888888999886 56999999999999999998753221112222222235667888888777 889999999999999


Q ss_pred             EeCCC
Q 048199          453 WDVTT  457 (495)
Q Consensus       453 wd~~~  457 (495)
                      .++.-
T Consensus      1125 ~~id~ 1129 (1431)
T KOG1240|consen 1125 LRIDH 1129 (1431)
T ss_pred             EEccc
Confidence            99864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.64  E-value=0.00024  Score=66.00  Aligned_cols=77  Identities=14%  Similarity=0.312  Sum_probs=63.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|.+.|++++|.|...+|.+|..|..|.+||+-...      .......+|..+|..+..-+- -..+.+++.||.|-+|
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~------g~~~el~gh~~kV~~l~~~~~-t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK------GTAYELQGHNDKVQALSYAQH-TRQLISCGEDGGIVVW  267 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc------ceeeeeccchhhhhhhhhhhh-heeeeeccCCCeEEEE
Confidence            899999999999999999999999999999997651      122334467788888877666 6789999999999999


Q ss_pred             eCCC
Q 048199          454 DVTT  457 (495)
Q Consensus       454 d~~~  457 (495)
                      |++.
T Consensus       268 ~mn~  271 (404)
T KOG1409|consen  268 NMNV  271 (404)
T ss_pred             eccc
Confidence            8754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.59  E-value=0.00044  Score=70.19  Aligned_cols=108  Identities=15%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC---c
Q 048199          374 HSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG---I  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg---~  449 (495)
                      .|.+.+....|+|||+.|+..+ .++...||.++....     ....... .........|+|+ +.+|+..+.++   .
T Consensus       281 ~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----~~~~lt~-~g~~~~~~~~SpD-G~~Ia~~s~~~g~~~  353 (427)
T PRK02889        281 QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----AAQRVTF-TGSYNTSPRISPD-GKLLAYISRVGGAFK  353 (427)
T ss_pred             CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----ceEEEec-CCCCcCceEECCC-CCEEEEEEccCCcEE
Confidence            3445567788999999877655 356777887653200     1111111 1222346789999 77777665544   5


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      |.+||+.++.... +..+ .......|+| ||.+|+.++.++
T Consensus       354 I~v~d~~~g~~~~-lt~~-~~~~~p~~sp-dg~~l~~~~~~~  392 (427)
T PRK02889        354 LYVQDLATGQVTA-LTDT-TRDESPSFAP-NGRYILYATQQG  392 (427)
T ss_pred             EEEEECCCCCeEE-ccCC-CCccCceECC-CCCEEEEEEecC
Confidence            9999998776443 3322 2346789999 999887777544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.56  E-value=0.00077  Score=68.67  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=68.3

Q ss_pred             CCCcEEEEEEccCCCEEE-EEeCCCc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCC--
Q 048199          375 SANIVSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEG--  448 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg--  448 (495)
                      +.+.+.+..|+|+|+.|+ +.+.++.  |.+||+.++        .......+........|+|| +..|+..+ .+|  
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--------~~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~  314 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--------TTTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSP  314 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC--------ceEEccCCCCccCceeEcCC-CCEEEEEECCCCCC
Confidence            455677889999998765 5566666  566677665        11122223344567899999 76666544 344  


Q ss_pred             cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .|.+||+..+. ...+..+...+....|+| +|.+|+..+.+
T Consensus       315 ~Iy~~d~~g~~-~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~  354 (435)
T PRK05137        315 QLYVMNADGSN-PRRISFGGGRYSTPVWSP-RGDLIAFTKQG  354 (435)
T ss_pred             eEEEEECCCCC-eEEeecCCCcccCeEECC-CCCEEEEEEcC
Confidence            57788876554 344443455567788999 99988876643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.53  E-value=0.00017  Score=67.00  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=78.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-C-----CCCeEEEEEcCCCCCEEEEecCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-T-----RSKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~-----~~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      .|+-.|.+|+++.|++.++++. |-.|.+|++...-.     ..-+..+. +     ..-|++..|||..-+.|+-++..
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-----sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-----SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCC-----ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            4889999999999999998885 88999999976411     11122221 1     12478899999977888888889


Q ss_pred             CcEEEEeCCCCcc----eee------------cccccCcEEEEEeecCCCCeEEEeeC
Q 048199          448 GIVTVWDVTTQQS----VME------------YEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       448 g~v~iwd~~~~~~----~~~------------~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      |+|++.|++....    ...            |.+--..|..+.|++ +|.+++|-+.
T Consensus       236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy  292 (433)
T KOG1354|consen  236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY  292 (433)
T ss_pred             CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc
Confidence            9999999984211    111            122234688899999 9999988653

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.51  E-value=1.9e-05  Score=57.31  Aligned_cols=47  Identities=21%  Similarity=0.659  Sum_probs=24.1

Q ss_pred             ccccccccchhh-h---cc-c---cCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIK-E---AF-L---TACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~-~---Pv-~---l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   98 (495)
                      ++.|+||...+. +   |. +   ..|++.|...||.+|+...           +.||.|+++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            568999998865 2   43 2   2799999999999998631           369999998764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.48  E-value=0.0012  Score=67.32  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=64.9

Q ss_pred             CCcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCc--
Q 048199          376 ANIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGI--  449 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~--  449 (495)
                      .+...+..|+|+|+.++ +.+.++  .|.+||+.++        .......+.......+|+|| +..|+..+ .+|.  
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g--------~~~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~  317 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR--------QLTRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQ  317 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC--------CeEECccCCCCccceEECCC-CCEEEEEECCCCCce
Confidence            34455789999998665 555555  4888898775        11111223334567899999 76665544 4555  


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      |.++|+.++.. ..+..+......++|+| +|.+|+..+.+
T Consensus       318 iy~~dl~~g~~-~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~  356 (433)
T PRK04922        318 IYRVAASGGSA-ERLTFQGNYNARASVSP-DGKKIAMVHGS  356 (433)
T ss_pred             EEEEECCCCCe-EEeecCCCCccCEEECC-CCCEEEEEECC
Confidence            55667666543 22322333455789999 99988776543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.0016  Score=59.31  Aligned_cols=48  Identities=27%  Similarity=0.663  Sum_probs=37.8

Q ss_pred             cccccc-chhhhcc----ccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCC
Q 048199           54 LCPICM-QIIKEAF----LTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQL  101 (495)
Q Consensus        54 ~C~IC~-~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l  101 (495)
                      .||+|. +.|.+|-    +-+|||..|..|..+.+... ..||.|...+....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            499997 4567773    23899999999999988765 599999998866443

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=6e-05  Score=71.88  Aligned_cols=48  Identities=33%  Similarity=0.769  Sum_probs=39.7

Q ss_pred             CCccccccccchhhhcc-------c-cCCCCccchhhHHhhhc--C-----CCCCCCCCCcCc
Q 048199           50 DKDMLCPICMQIIKEAF-------L-TACGHSFCYMCIITHLR--N-----KSDCPCCGHYLT   97 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv-------~-l~CGH~FC~~Ci~~~~~--~-----~~~CP~Cr~~~~   97 (495)
                      ..+-.|.||++...++.       + .+|-|.||..||.+|-.  .     ...||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            45778999999999876       3 46999999999999973  2     368999998764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.44  E-value=5e-05  Score=54.16  Aligned_cols=45  Identities=29%  Similarity=0.556  Sum_probs=36.8

Q ss_pred             ccccccchhhhc---------------c-ccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           54 LCPICMQIIKEA---------------F-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~P---------------v-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      .|.||...+-++               + .-.|-|.|...||.+|+.....||.||++...
T Consensus        22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            577887777653               2 22699999999999999999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.41  E-value=0.0027  Score=57.27  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ  458 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~  458 (495)
                      +.++.+++++.++++.+....|..|.++..-.-    ......-...+.-.+..|+.. ...+|++.+||++.|||++..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEeccc
Confidence            789999999999999999999999999875100    001112223344578899988 889999999999999999874


Q ss_pred             cce-----eecccccCcEEEEEeec
Q 048199          459 QSV-----MEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       459 ~~~-----~~~~~h~~~v~~v~~~~  478 (495)
                      ...     .+-..|.+.+..+.|++
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecC
Confidence            322     22335889999999997

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.40  E-value=0.00047  Score=71.81  Aligned_cols=136  Identities=16%  Similarity=0.179  Sum_probs=95.1

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC---------CCcEEEEEccccccC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV---------SRRIKVFDFASVVNE  411 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~  411 (495)
                      +..|..-++|.+-|..   .++.+.++.     .|++.|.++..  .|++|+|+|.         |.-|+|||++..   
T Consensus       190 lf~G~t~G~V~LrD~~---s~~~iht~~-----aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---  256 (1118)
T KOG1275|consen  190 LFCGDTRGTVFLRDPN---SFETIHTFD-----AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM---  256 (1118)
T ss_pred             EEeecccceEEeecCC---cCceeeeee-----ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh---
Confidence            4445555577777663   345566666     79999998766  7999999987         455899999986   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccc---eeecccccCcEEEEEeecCCCCeEEEe
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQS---VMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~---~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                           ..+.-++......-+.|+|.-...++..+..|.+.+-|..+ +.+   +..+......+.++++++ +|..|+-|
T Consensus       257 -----ral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafg  330 (1118)
T KOG1275|consen  257 -----RALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFG  330 (1118)
T ss_pred             -----hccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEe
Confidence                 11111222223356788888667888888999999999432 222   233333355699999999 99999999


Q ss_pred             eCCCcEeC
Q 048199          488 SDDCKVLY  495 (495)
Q Consensus       488 s~D~~v~l  495 (495)
                      ..+|.|.+
T Consensus       331 d~~g~v~~  338 (1118)
T KOG1275|consen  331 DHEGHVNL  338 (1118)
T ss_pred             cccCcEee
Confidence            99998864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.39  E-value=0.002  Score=65.32  Aligned_cols=106  Identities=14%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             CCCcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCCC--
Q 048199          375 SANIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYEG--  448 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg--  448 (495)
                      +.+.+.++.|+|+|+.|+ +.+.++  .|.+||+.++        .......+........|+|+ +..|+.. ..++  
T Consensus       232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~  302 (417)
T TIGR02800       232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--------QLTRLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSP  302 (417)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC--------CEEECCCCCCCCCCEEECCC-CCEEEEEECCCCCc
Confidence            345567789999998665 444444  5888888765        11111122333456789999 6666544 3344  


Q ss_pred             cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      .|.+||+.++.. ..+..+...+..+.|+| +|.+|+.++.++
T Consensus       303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~  343 (417)
T TIGR02800       303 QIYMMDADGGEV-RRLTFRGGYNASPSWSP-DGDLIAFVHREG  343 (417)
T ss_pred             eEEEEECCCCCE-EEeecCCCCccCeEECC-CCCEEEEEEccC
Confidence            477778776543 34444556677889999 999888877664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.39  E-value=0.00023  Score=65.72  Aligned_cols=103  Identities=14%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce
Q 048199          382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV  461 (495)
Q Consensus       382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~  461 (495)
                      .+|+|+|+++|+++.- .+-|-|..+-        ..+..+..-.+|.-+.|..|.-.+|-....|+.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETL--------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchh--------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            4699999999999854 7777787764        222333345677889999884444555566779999999888777


Q ss_pred             eecccccCcEEEEEeecCCCCeEEE-eeCCCcEe
Q 048199          462 MEYEEHEKRAWSVDFSRTEPSMLVS-GSDDCKVL  494 (495)
Q Consensus       462 ~~~~~h~~~v~~v~~~~~~g~~l~s-~s~D~~v~  494 (495)
                      ..+..-...+.+++|+| +|++|.. ...|-+|.
T Consensus        85 ckIdeg~agls~~~WSP-dgrhiL~tseF~lriT  117 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSP-DGRHILLTSEFDLRIT  117 (447)
T ss_pred             EEeccCCCcceeeeECC-CcceEeeeecceeEEE
Confidence            88887788999999999 9866554 44565554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.35  E-value=0.00027  Score=65.75  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecCCCcE
Q 048199          374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      -|.+.|+++..-. ++++|.+.+++|+|++||++.-+..    .......+|-..  ..-+..++. ...+++++.|...
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~----~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcyt  370 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK----KSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYT  370 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc----cceeeeecccccccccccccccc-cceEEEccCeeEE
Confidence            4788999988776 7889999999999999999875211    011122233221  222334555 5678889999999


Q ss_pred             EEEeCCCCcceeeccc----ccCcEEEEEeec
Q 048199          451 TVWDVTTQQSVMEYEE----HEKRAWSVDFSR  478 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~----h~~~v~~v~~~~  478 (495)
                      +||.++.|..+.++.-    -+..+++++|..
T Consensus       371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEEecccCceeeccCCCCccccccccceehhc
Confidence            9999999998877753    234677888764

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=7.6e-05  Score=69.04  Aligned_cols=48  Identities=38%  Similarity=0.767  Sum_probs=44.0

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .|+-.||||.--..+.|..||||--|+.||.+++.+.+.|=.|+..+.
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            356679999999999999999999999999999999999999988765

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.34  E-value=8.8e-05  Score=49.47  Aligned_cols=40  Identities=18%  Similarity=0.575  Sum_probs=32.5

Q ss_pred             ccccccc--hhhhccccCCC-----CccchhhHHhhhcCC--CCCCCCC
Q 048199           54 LCPICMQ--IIKEAFLTACG-----HSFCYMCIITHLRNK--SDCPCCG   93 (495)
Q Consensus        54 ~C~IC~~--~~~~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr   93 (495)
                      .|.||++  ...+|.+.||.     |.|...|+.+|+...  .+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899997  44567788984     889999999999765  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.34  E-value=0.0021  Score=72.12  Aligned_cols=116  Identities=12%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCC-CCcC----CCeeecC---------CCCCeEEEEEcCCCCCEEE
Q 048199          378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEP-ADVH----CPVVEMP---------TRSKLSCLSWNKFSKNRIA  442 (495)
Q Consensus       378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~-~~~~----~~~~~~~---------~~~~i~~~~~~p~~~~~l~  442 (495)
                      ....|+|+|++. ++++.+.++.|++||+.++.... ....    .....++         ......+++|+++ +.+++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-G~LYV  819 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-GQIYV  819 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-CcEEE
Confidence            456799999987 56677778999999998651100 0000    0000111         1113468999999 88999


Q ss_pred             EecCCCcEEEEeCCCCcceeec-------------ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          443 SSDYEGIVTVWDVTTQQSVMEY-------------EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       443 sg~~dg~v~iwd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +-..++.|++||..++......             .++-.....|++++ +|.++++.+.+++|++
T Consensus       820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRY  884 (1057)
T ss_pred             EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEE
Confidence            9999999999999876543221             11223577899999 9999999989998874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.0013  Score=65.51  Aligned_cols=93  Identities=10%  Similarity=0.036  Sum_probs=80.6

Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC
Q 048199          390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK  469 (495)
Q Consensus       390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~  469 (495)
                      .++-|-..|.|-+|++..+     ........-.|.+.|+++.|+.+ -..|+|++.|+.|-.|+...+..++.+.+...
T Consensus        72 ~lvlgt~~g~v~~ys~~~g-----~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~  145 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGG-----EITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKP  145 (541)
T ss_pred             EEEeecCCccEEEEEecCC-----eEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCC
Confidence            6777888999999999887     22333344568899999999988 77999999999999999999999999999999


Q ss_pred             cEEEEEeecCCCCeEEEeeC
Q 048199          470 RAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       470 ~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .+.+++.+| ||.+|++||.
T Consensus       146 ~~~sl~is~-D~~~l~~as~  164 (541)
T KOG4547|consen  146 LVSSLCISP-DGKILLTASR  164 (541)
T ss_pred             ccceEEEcC-CCCEEEeccc
Confidence            999999999 8999998875

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.30  E-value=5.8e-05  Score=76.80  Aligned_cols=47  Identities=21%  Similarity=0.510  Sum_probs=40.4

Q ss_pred             ccccccccchhhhccc---cCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~---l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      .-.||+|+..|.|-..   .+|+|.||..||.-|-....+||+||..+..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            3469999999998643   3799999999999999999999999988753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.29  E-value=0.0024  Score=63.18  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             CCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe-EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199          388 DQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL-SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       388 ~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~  465 (495)
                      ++++ ++-..+++|.|.|..+.        ..+..+.....+ ..+.|+|| +.+++..+.||.|.++|+.+++.+.++.
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~   75 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIK   75 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence            3444 46667899999999886        444455433344 45789999 8899999999999999999999999887


Q ss_pred             cccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199          466 EHEKRAWSVDFSRTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       466 ~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~  494 (495)
                      .- ....++++++ ||.+++++.. ++.|.
T Consensus        76 ~G-~~~~~i~~s~-DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   76 VG-GNPRGIAVSP-DGKYVYVANYEPGTVS  103 (369)
T ss_dssp             -S-SEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred             cC-CCcceEEEcC-CCCEEEEEecCCCcee
Confidence            53 4567899999 9999988874 55443

...

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.27  E-value=0.00015  Score=67.85  Aligned_cols=53  Identities=23%  Similarity=0.607  Sum_probs=43.3

Q ss_pred             CCccccccccchhhh--c-c-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199           50 DKDMLCPICMQIIKE--A-F-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP  103 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~--P-v-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~  103 (495)
                      ...+.|||++..|..  + | +-+|||+|+..+|...- ....||+|.+++...|+++
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence            456899999999954  2 3 34999999999999984 3567999999999888765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.26  E-value=0.0035  Score=56.61  Aligned_cols=110  Identities=12%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCC-CEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK-NRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~~l~sg~~dg~v~iwd  454 (495)
                      ++.=.+.+|+.....||++..||++.|||++........  .....-.|.+.+..+.|++.+. .+|+-.-.-+.+++.|
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D  280 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE--ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD  280 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh--hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence            344567889999999999999999999999986111100  0001124778899999997622 2333333457899999


Q ss_pred             CCCCcceeecc-------ccc-CcEEEEEeecCCCCeEEEee
Q 048199          455 VTTQQSVMEYE-------EHE-KRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       455 ~~~~~~~~~~~-------~h~-~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ++++...+.+.       .|. ..|..-.|+. ++.-+.+.+
T Consensus       281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~  321 (344)
T KOG4532|consen  281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN  321 (344)
T ss_pred             cccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence            99986554432       232 3477777877 554444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.24  E-value=0.00045  Score=71.31  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=79.6

Q ss_pred             EEEEccCCCEEEEEeC----CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          381 SIEFDRDDQLFATAGV----SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       381 ~l~~~p~~~~l~s~s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      -++|||...+|+.++.    .|+|.||-- ++        .|.......-.+.+++|||. ...|+.|-.-|.+.+|...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tG--------EPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TG--------EPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEec-CC--------CCCcccccceehhhhccChH-HHHHhhccccceeEEEecC
Confidence            3569999999888764    577888743 33        12222223334678999999 8899999999999999988


Q ss_pred             CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       457 ~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +.+.-..-..|..+|..+.|++ +|..|+|+..-|.|.
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~  126 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVH  126 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeE
Confidence            7666666677999999999999 999999998777664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0025  Score=65.88  Aligned_cols=96  Identities=8%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC----CCCEEEEecCCCcEEEEeCCC-Cc
Q 048199          385 DRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF----SKNRIASSDYEGIVTVWDVTT-QQ  459 (495)
Q Consensus       385 ~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~----~~~~l~sg~~dg~v~iwd~~~-~~  459 (495)
                      +-+|.+++|||.||+|.|..+.+.        ..........++.+++++|+    ....+++|+.-| +.++.-+= |.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn  150 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN  150 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCC--------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence            447999999999999999999886        23344445667899999998    356789999888 66665321 11


Q ss_pred             ce-eecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          460 SV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       460 ~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .. ..+..-.++|.++.|   .|+++|=++++|.
T Consensus       151 k~~v~l~~~eG~I~~i~W---~g~lIAWand~Gv  181 (846)
T KOG2066|consen  151 KDSVVLSEGEGPIHSIKW---RGNLIAWANDDGV  181 (846)
T ss_pred             ccceeeecCccceEEEEe---cCcEEEEecCCCc
Confidence            11 134445789999999   5689999988883

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.21  E-value=0.00021  Score=47.64  Aligned_cols=49  Identities=22%  Similarity=0.596  Sum_probs=38.8

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  100 (495)
                      .....|-.|...-+..+.++|||..|..|....  .-.-||.|..++...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ccceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence            345678888888888999999999999997642  2356999999987543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.18  E-value=0.0098  Score=54.46  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=27.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFAS  407 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~  407 (495)
                      ..=+-++|+||+.+||.+...|+|++||+-.
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            3456789999999999999999999999863

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.16  E-value=0.00036  Score=77.56  Aligned_cols=129  Identities=16%  Similarity=0.200  Sum_probs=89.0

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~  414 (495)
                      +..+.-+..|+.+.+|....    .+...-+     -|.....++.|-.  ..+++++   .++.+.+||..-.     .
T Consensus      2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~q-----chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-----~ 2326 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQ-----CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-----P 2326 (2439)
T ss_pred             CCceeeeccCCceeecccCC----cceeccc-----cCCccccceeeee--hhhhccccCCCCCcccchhcccC-----c
Confidence            33444444566677777641    1122222     4777788888854  6777765   4788999998654     1


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ....+. ..|.+.++++++-|. ..+|+||+.+|.|++||++..+.+..|..         +.  ...++++|+..|.++
T Consensus      2327 ~~s~v~-~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2327 MNSLVH-TCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             ccceee-eecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceE
Confidence            122233 678899999999999 89999999999999999998777666653         22  235777888877776


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus      2394 I 2394 (2439)
T KOG1064|consen 2394 I 2394 (2439)
T ss_pred             E
Confidence            4

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.16  E-value=0.0045  Score=62.70  Aligned_cols=105  Identities=14%  Similarity=0.189  Sum_probs=64.6

Q ss_pred             CcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCC--CcEEE
Q 048199          377 NIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYE--GIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~d--g~v~i  452 (495)
                      +......|+|||+.|+..+ .++...+|.+.....   + ..+.........+....|+|| +..|+.. ..+  ..|.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~---g-~~~~~lt~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v  355 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE---G-QSPRLLTKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICV  355 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECccc---c-cceEEeccCCCCccceeECCC-CCEEEEEEcCCCCcEEEE
Confidence            3446789999999777655 567667775532100   0 011111223345678899999 6666544 333  36899


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ||+.++.... +......+....|+| ||.+|+..+
T Consensus       356 ~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~  389 (428)
T PRK01029        356 YDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSA  389 (428)
T ss_pred             EECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEE
Confidence            9998776543 332334567789999 888776443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.16  E-value=0.00033  Score=71.24  Aligned_cols=118  Identities=18%  Similarity=0.280  Sum_probs=77.2

Q ss_pred             CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcE
Q 048199          324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRI  400 (495)
Q Consensus       324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i  400 (495)
                      .+|...+.+..+..  ...+++.+.|+.+-.|++..-.  .++.....    .| ..-..++|+- +++.+ ..+..+.|
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~----w~-s~asqVkwnyk~p~vl-asshg~~i  182 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSS----WR-SAASQVKWNYKDPNVL-ASSHGNDI  182 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeec----cc-ccCceeeecccCcchh-hhccCCce
Confidence            34444444444432  3456778889999999986333  23333221    22 3345678886 45555 45567889


Q ss_pred             EEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          401 KVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       401 ~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ++||++.+       ..+.... +|-..++.++|+......+.+.+.||+|++||..
T Consensus       183 ~vwd~r~g-------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  183 FVWDLRKG-------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             EEEeccCC-------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            99999987       3444444 4667788888887656678899999999999753

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00016  Score=67.96  Aligned_cols=48  Identities=21%  Similarity=0.588  Sum_probs=41.3

Q ss_pred             CccccccccchhhhccccCCCCcc-chhhHHhhhcCCCCCCCCCCcCcc
Q 048199           51 KDMLCPICMQIIKEAFLTACGHSF-CYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~CGH~F-C~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ..-.|-||+...+|-++|||-|.- |..|.+...-....||+||+++..
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            356799999999999999999985 999998776556789999998753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.0039  Score=63.50  Aligned_cols=118  Identities=14%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC--CcCCC------eeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA--DVHCP------VVEMPTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~~~------~~~~~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      ......+++|+....+++.||.||.++|.-+.+......  +...+      ...-+|...|.-+.|+.. ...|-|++.
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCC
Confidence            345678999999999999999999999998876522221  10011      122378889999999988 889999999


Q ss_pred             CCcEEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 EGIVTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +|.|.||-+..|.=...+.  ...+.|.+++|+- +|..++-.=.||.|-
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI  140 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence            9999999998775433332  2356788999998 888877766676653

>smart00320 WD40 WD40 repeats

Probab=97.14  E-value=0.0016  Score=39.84  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=29.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd  404 (495)
                      .|...|.++.|++.+.++++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            6788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=9.6e-05  Score=52.25  Aligned_cols=45  Identities=27%  Similarity=0.605  Sum_probs=35.7

Q ss_pred             ccccccchhhh------------cccc-CCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199           54 LCPICMQIIKE------------AFLT-ACGHSFCYMCIITHLRNK---SDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~------------Pv~l-~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~   98 (495)
                      +|.||.-.|.-            |.++ .|-|.|...||.+|+...   ..||.||+....
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            78888887752            3333 699999999999999764   589999998653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.03  E-value=0.006  Score=61.83  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             CcEEEEEEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEE-EecCCCc
Q 048199          377 NIVSSIEFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIA-SSDYEGI  449 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~-sg~~dg~  449 (495)
                      +......|+|||+.|+..+.     |..+.+|++..+.     ...+..... ..+......|+|| |..|+ +...+|.
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~-----~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~  304 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA-----IGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGR  304 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC-----CCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCC
Confidence            34556789999998776542     3344556766430     001111111 1233457799999 66554 4555776


Q ss_pred             EEEEeC--CC-CcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          450 VTVWDV--TT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       450 v~iwd~--~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..||.+  .. +.....+..+...+....|+| ||..|+..+.
T Consensus       305 ~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~  346 (428)
T PRK01029        305 PRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSV  346 (428)
T ss_pred             ceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEc
Confidence            666644  32 233444554555677889999 9998877654

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00021  Score=67.21  Aligned_cols=46  Identities=30%  Similarity=0.816  Sum_probs=36.0

Q ss_pred             CCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ......|.||++.+.+.+.+||||+-|  |..-.. .-++||+||+...
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence            344567999999999999999999988  765432 2345999998764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.01  E-value=0.0076  Score=61.35  Aligned_cols=102  Identities=16%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             CcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCC--cE
Q 048199          377 NIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEG--IV  450 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg--~v  450 (495)
                      +.+....|+|+|+.|+ +.+.++  .|.+||+.++        .......+........|+|| +..| +++..+|  .|
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~--------~~~~lt~~~~~~~~~~~spD-g~~i~f~s~~~g~~~i  313 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR--------QLSRVTNHPAIDTEPFWGKD-GRTLYFTSDRGGKPQI  313 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC--------CeEEcccCCCCcCCeEECCC-CCEEEEEECCCCCceE
Confidence            4455789999999776 455555  5777788775        11111223334566789999 5554 4544444  47


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .+||+.++.... +...........|+| +|.+|+..+.
T Consensus       314 y~~d~~~g~~~~-lt~~~~~~~~~~~Sp-dg~~i~~~~~  350 (430)
T PRK00178        314 YKVNVNGGRAER-VTFVGNYNARPRLSA-DGKTLVMVHR  350 (430)
T ss_pred             EEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEEc
Confidence            777877665332 221122334578999 8888877664

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.98  E-value=0.00023  Score=67.07  Aligned_cols=45  Identities=29%  Similarity=0.769  Sum_probs=39.6

Q ss_pred             ccccccchhhhccccCCCCccchhhHHhhhcCC--CCCCCCCCcCcc
Q 048199           54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNK--SDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~   98 (495)
                      .|-||-+-=+|-.+=||||..|-.|+..|....  ..||.||..+.-
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            599999999999999999999999999997543  689999987754

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00031  Score=68.08  Aligned_cols=48  Identities=31%  Similarity=0.651  Sum_probs=37.3

Q ss_pred             CCccccccccchhh-----hc------------cccCCCCccchhhHHhhhcCC-CCCCCCCCcCc
Q 048199           50 DKDMLCPICMQIIK-----EA------------FLTACGHSFCYMCIITHLRNK-SDCPCCGHYLT   97 (495)
Q Consensus        50 ~~~l~C~IC~~~~~-----~P------------v~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~   97 (495)
                      +....|+||+....     .|            ..+||-|.|...|+++|...- -.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            34456999998763     11            245999999999999999854 48999999864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.94  E-value=0.0086  Score=61.15  Aligned_cols=100  Identities=12%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             EEEEEEccCCCEEE-EEeCCCc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc--EEE
Q 048199          379 VSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI--VTV  452 (495)
Q Consensus       379 V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~--v~i  452 (495)
                      .....|+|+|+.|+ +.+.++.  |.+||+.++        .......+........|+|| +..| +++..+|.  |.+
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg--------~~~~lt~~~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~  334 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK--------ALTRITRHRAIDTEPSWHPD-GKSLIFTSERGGKPQIYR  334 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC--------CeEECccCCCCccceEECCC-CCEEEEEECCCCCceEEE
Confidence            45689999999776 4566676  666677664        11111223334567899999 5555 45544554  556


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      +|+.++.... +..+.......+|+| ||.+|+..+.
T Consensus       335 ~dl~~g~~~~-Lt~~g~~~~~~~~Sp-DG~~l~~~~~  369 (448)
T PRK04792        335 VNLASGKVSR-LTFEGEQNLGGSITP-DGRSMIMVNR  369 (448)
T ss_pred             EECCCCCEEE-EecCCCCCcCeeECC-CCCEEEEEEe
Confidence            6777665432 221222334578999 8888877654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0037  Score=59.56  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          423 PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       423 ~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+...|..++|+|.+..++..++.+.+|+|.|+++...+.++..| ..+|+.+|.-.+..+|+.|-.+|.|.|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            455679999999996558999999999999999999999999988 789999999856677888888888864

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.92  E-value=0.00069  Score=44.22  Aligned_cols=42  Identities=29%  Similarity=0.759  Sum_probs=22.5

Q ss_pred             cccccchhhhc--c--ccCCCCccchhhHHhhhc-CCCCCCCCCCcC
Q 048199           55 CPICMQIIKEA--F--LTACGHSFCYMCIITHLR-NKSDCPCCGHYL   96 (495)
Q Consensus        55 C~IC~~~~~~P--v--~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~   96 (495)
                      ||+|.+.+..-  .  -.+||+-+|+.|..+... ..+.||-||+++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888888321  2  236999999999999886 468999999875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0049  Score=62.16  Aligned_cols=92  Identities=15%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeE-EEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLS-CLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      -.|.-+.|+|.-.++|++..+|.|-++.+...         .+-.+. +...++ +++|.|| |..|+.|-.||+|++-|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q---------Rlwtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ---------RLWTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccc---------eeEeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEE
Confidence            45788999999999999999999888887742         222233 444455 9999999 99999999999999999


Q ss_pred             CCCCcceeecc-cccCcEEEEEeec
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSR  478 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~  478 (495)
                      +.++..+..+. .-...|.++.|.+
T Consensus        91 ve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   91 VEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccCCCceeccccccccchheeeccc
Confidence            99998877732 1245677777754

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00042  Score=69.30  Aligned_cols=64  Identities=22%  Similarity=0.455  Sum_probs=47.5

Q ss_pred             CCCCccccccccchhh----hccccCCCCccchhhHHhhhcCCCCCCCCCCcC-----ccCCCcchHHHHHHHHHH
Q 048199           48 ELDKDMLCPICMQIIK----EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYL-----TNNQLYPNFLLDKLLKKT  114 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~----~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~-----~~~~l~~n~~l~~~v~~~  114 (495)
                      .+.+.|.|+||+..|-    .||.+.|||+.|+.|++....  .+|| |...-     .+++++.|+.+-..+...
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~De~~~~~~~~e~p~n~alL~~~~d~   79 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKRDEDSSLMQLKEEPRNYALLRREHDA   79 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCccccchhcChhhcchhHHHHHhhcch
Confidence            4566789999988885    599999999999999998654  4677 44321     235677888876665544

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.00015  Score=65.55  Aligned_cols=42  Identities=33%  Similarity=0.890  Sum_probs=35.7

Q ss_pred             ccccccccchhhhccccCCCCcc-chhhHHhhhcCCCCCCCCCCcCc
Q 048199           52 DMLCPICMQIIKEAFLTACGHSF-CYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~F-C~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .-.|.||++.+.|-+.|+|||.- |..|-.+.-    .||+||+.+.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHH
Confidence            56799999999999999999975 888877653    6999998753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.82  E-value=0.034  Score=54.32  Aligned_cols=109  Identities=6%  Similarity=-0.068  Sum_probs=86.8

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCC-cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSR-RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      +|.+.|+=..+.-+++-++.|..|+ .+-|||.+++        ........-+.|.++..+++ |.+++.+.....+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------e~kr~e~~lg~I~av~vs~d-GK~~vvaNdr~el~v  427 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------EVKRIEKDLGNIEAVKVSPD-GKKVVVANDRFELWV  427 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------eEEEeeCCccceEEEEEcCC-CcEEEEEcCceEEEE
Confidence            5677788888877777888899998 8999999987        22233345577999999999 889999988888999


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .|+.+|.....=+...+-|+.++|+| ++.++|-+=-+|.
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy  466 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGY  466 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcce
Confidence            99999876555555567899999999 9999987654443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=96.76  E-value=0.00026  Score=74.33  Aligned_cols=47  Identities=32%  Similarity=0.921  Sum_probs=41.0

Q ss_pred             cccccccchhhhccccCCCCccchhhHHhhhcCC--CCCCCCCCcCccCC
Q 048199           53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK--SDCPCCGHYLTNNQ  100 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~~  100 (495)
                      ..|+||.+ ...+++++|||.||..|+...+...  ..||.||..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999 8888999999999999999998865  37999998876543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=96.76  E-value=0.006  Score=57.03  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=91.7

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ||.+.|++...-|...-+++.+.|.++|||--+..     +...|-.......+++++.+++. ...|+.|-.+|++.=+
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-----~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-----GQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEF   95 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEeccc-----cccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEEE
Confidence            88888999888898888999999999999966554     11233333345678999999998 8899999999999988


Q ss_pred             eC----CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 DV----TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 d~----~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .+    +....++.+..|..+|..+.|+. ...++++.+.|..+
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~  138 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQF  138 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccce
Confidence            54    45667788888999999999998 78899999988764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.74  E-value=0.0077  Score=61.51  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...|.=-+++..+++++-|+.-|.+.+|+-..+..      .....-+..+.+..+..|++ ..++|.|+..|.|.|+-+
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------RKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhh------hcccccCccceEEEEEecch-hHhhhhhcCCceEEeehh
Confidence            34454555677899999999999999999877611      01111123445667778888 889999999999999988


Q ss_pred             CCCcce-----eec-ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          456 TTQQSV-----MEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       456 ~~~~~~-----~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ..+.+-     ..+ ..|...|++++|++ |+..+++|..-|+|.
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~  149 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVV  149 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEE
Confidence            764321     111 13778999999999 999999999998874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.71  E-value=0.017  Score=65.02  Aligned_cols=115  Identities=12%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             EEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-CCCcCCCe------eecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          380 SSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-PADVHCPV------VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       380 ~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      ++++|+| ++.++++.+.++.|++||..++... +.+.....      .........+.++|+|+++.++++...++.|+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            5789999 6677888888999999998765110 00000000      00011234678999999333667777789999


Q ss_pred             EEeCCCCccee-------------ecccc--------cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          452 VWDVTTQQSVM-------------EYEEH--------EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       452 iwd~~~~~~~~-------------~~~~h--------~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +||+.++....             .+..+        -....+++|++ +|.++++.+.+++|++
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrv  829 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKK  829 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEE
Confidence            99998754211             11101        11246889999 8999999888888863

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.00054  Score=51.64  Aligned_cols=44  Identities=27%  Similarity=0.631  Sum_probs=36.3

Q ss_pred             cccccccchhhhcc---------------c--cCCCCccchhhHHhhhcCCCCCCCCCCcC
Q 048199           53 MLCPICMQIIKEAF---------------L--TACGHSFCYMCIITHLRNKSDCPCCGHYL   96 (495)
Q Consensus        53 l~C~IC~~~~~~Pv---------------~--l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~   96 (495)
                      -.|.||..-+-|+.               .  -.|-|.|...||.+|++....||.|.++-
T Consensus        47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            36999998876541               1  15999999999999999999999998764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.61  E-value=0.091  Score=41.47  Aligned_cols=101  Identities=21%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          379 VSSIEFDR---DD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       379 V~~l~~~p---~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      |++|++..   +| +.|+.||.|..||+|+-...          +..+...+.|.++.-...  ..|+.|..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEITETDKVTSLCSLGG--GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEecccceEEEEEcCC--CEEEEEecCCEEEEEe
Confidence            56676654   33 47899999999999987653          455566677888876654  5799999999999998


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCC---CeEEEeeCCCcEe
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEP---SMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g---~~l~s~s~D~~v~  494 (495)
                      -..  .+-..+. ...+.++++...++   .-|++|=.+|.|-
T Consensus        70 ~~~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   70 RSQ--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             Ccc--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            532  2222221 22366666553232   2588888888874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.54  E-value=0.0044  Score=57.08  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=77.5

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CC-----CCeEEEEEcCCCCCEEEEecCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TR-----SKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      .|.-.|.+|+|+.|.+.++++. |-.|.+|++...     ++..-+..+. |.     .-|++..|||..-+.|.-++..
T Consensus       170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~-----D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEII-----DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             cceeEeeeeeecCchheeeecc-ceeeeecccccc-----CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            4778899999999988887775 889999998865     1112222221 21     2478899999877788888889


Q ss_pred             CcEEEEeCCCCc-c---------------eeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          448 GIVTVWDVTTQQ-S---------------VMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       448 g~v~iwd~~~~~-~---------------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      |.|++-|++... |               +.-|.+-...|..+.|++ +|.++++-+.
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy  300 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY  300 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc
Confidence            999999998421 1               111223345788899999 9999988654

>smart00320 WD40 WD40 repeats

Probab=96.54  E-value=0.0047  Score=37.61  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          459 QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       459 ~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+...+..|...|+++.|++ ++.++++++.|+.|++
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~   38 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKL   38 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEE
Confidence            45566778899999999999 8889999999999875

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.51  E-value=0.035  Score=54.28  Aligned_cols=105  Identities=13%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC----c
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG----I  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg----~  449 (495)
                      ..-+.|.++..+|+|++++.+.....+-+.|++++       ...+......+-|..+.|||+ +.+||-+--+|    .
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-------nv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~  470 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-------NVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQS  470 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-------CeeEecccccceeEEEEEcCC-ceeEEEecCcceeeee
Confidence            35678999999999999999988888999999987       223334455677999999999 88888776665    5


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      |+++|+..++....-. ....=.+-+|.| ++.+|.--|
T Consensus       471 Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs  507 (668)
T COG4946         471 IKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS  507 (668)
T ss_pred             EEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence            9999998765433322 222224456777 777665433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.017  Score=59.91  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=82.2

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-----CCEEEEEeCCCcEEEEEccccccC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-----DQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .++.++++++|++|.|..+-. ++.....++        .-++.+|+++|+     ...|++||.-| +-++.-...   
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~-~~~~~~~df--------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl---  148 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFT-DDEITQYDF--------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL---  148 (846)
T ss_pred             CCceEEEecCCCcEEEeeccC-CccceeEec--------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh---
Confidence            467788999999888866532 222222333        357899999997     55889999888 777765433   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc------EEEEEeec
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR------AWSVDFSR  478 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~------v~~v~~~~  478 (495)
                        +....+......++|.++.|.   |++||=++.+ -|+|||+.+++.+..+..-...      ...+.|.+
T Consensus       149 --gnk~~v~l~~~eG~I~~i~W~---g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~  215 (846)
T KOG2066|consen  149 --GNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD  215 (846)
T ss_pred             --cCccceeeecCccceEEEEec---CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecC
Confidence              112333344567889999999   7799888755 5799999988766665432222      24566765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.49  E-value=0.012  Score=58.35  Aligned_cols=100  Identities=9%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----------C-C
Q 048199          380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY----------E-G  448 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~----------d-g  448 (495)
                      +-+.|+|.|.||+|-..-| |.+|-=.+.        .....+.|. .|.-+.|+|. ..||+|=+.          + .
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--------~r~~RF~Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESF--------DRIQRFYHP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccH--------HHHHhccCC-CceeeecCCc-cceEEEecCCccccCcccCCCc
Confidence            4578999999999987554 888965443        222333443 5788999999 899998542          2 3


Q ss_pred             cEEEEeCCCCcceeeccc--ccCcEEE-EEeecCCCCeEEEeeCCC
Q 048199          449 IVTVWDVTTQQSVMEYEE--HEKRAWS-VDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~--h~~~v~~-v~~~~~~g~~l~s~s~D~  491 (495)
                      .+.|||+++|...++|..  ....+|- +.||. |+.++|--..|+
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~s  327 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGNS  327 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEeccce
Confidence            689999999999888876  3334443 47898 888888766554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.006  Score=58.97  Aligned_cols=141  Identities=14%  Similarity=0.029  Sum_probs=91.4

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ....+++-|+.++.|.-.+..-...+.-     +..|.+.|.+++.+-++.++.|.+. |+.+|+||+.+-        .
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKh-----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~--------D   87 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKH-----FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF--------D   87 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhh-----hHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc--------c
Confidence            3345778888999998754322222222     2268899999999999999999887 999999999875        1


Q ss_pred             CeeecCCCCCeEEEEEcCCCC----CEEEEecCCCcEEEEeCCCCc-ce-eecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSK----NRIASSDYEGIVTVWDVTTQQ-SV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~----~~l~sg~~dg~v~iwd~~~~~-~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ....+........+.|.-..|    .+-++.-.+|.+.|+|-.... .. ..-.-|..+|..+.+++ -+..++|....|
T Consensus        88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~g  166 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISG  166 (558)
T ss_pred             hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccc
Confidence            111111112223344433313    233444467889999987543 22 33334899999999999 777787776556


Q ss_pred             cE
Q 048199          492 KV  493 (495)
Q Consensus       492 ~v  493 (495)
                      .|
T Consensus       167 mV  168 (558)
T KOG0882|consen  167 MV  168 (558)
T ss_pred             ee
Confidence            55

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.42  E-value=0.057  Score=54.52  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=64.0

Q ss_pred             cEEEEEEccCCCE-EEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEE
Q 048199          378 IVSSIEFDRDDQL-FATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVT  451 (495)
Q Consensus       378 ~V~~l~~~p~~~~-l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~  451 (495)
                      .+..-.|+|+|+. ++..+.+   ..|.++|+.++        .........+......|+||+..++++.+.++  .|.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--------~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--------KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--------cEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence            6778999999984 5544433   45888888776        11121223444567889999444555555454  577


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ++|+.++. ...+..+........|+| ||..|+-.+.
T Consensus       261 ~~dl~~g~-~~~LT~~~~~d~~p~~SP-DG~~I~F~Sd  296 (419)
T PRK04043        261 LYDTNTKT-LTQITNYPGIDVNGNFVE-DDKRIVFVSD  296 (419)
T ss_pred             EEECCCCc-EEEcccCCCccCccEECC-CCCEEEEEEC
Confidence            77887665 344444443334567999 9987766664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.33  E-value=0.049  Score=53.60  Aligned_cols=115  Identities=14%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             CCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCeee----cCCCCCeEEEEEcCCCCCEEEEec-CCCc
Q 048199          376 ANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVVE----MPTRSKLSCLSWNKFSKNRIASSD-YEGI  449 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~l~sg~-~dg~  449 (495)
                      ...-+.+.|+|+++++. ..-.+.+|.+|++......+... ..+..    .........+.++|| +.+|+.+. ...+
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~s  268 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI-QTISTLPEGFTGENAPAEIAISPD-GRFLYVSNRGSNS  268 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEESCETTSCSSSSEEEEEE-TT-SSEEEEEECTTTE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE-EEeeeccccccccCCceeEEEecC-CCEEEEEeccCCE
Confidence            45678999999998765 45568889999998321111000 00011    112236889999999 77666554 5668


Q ss_pred             EEEEeCC--CCc--ceeecccccCcEEEEEeecCCCCeEEEeeC-CCcE
Q 048199          450 VTVWDVT--TQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSD-DCKV  493 (495)
Q Consensus       450 v~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~~v  493 (495)
                      |.+|++.  +|.  .+..+.......+.++|+| +|.+|+++.. ++.|
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTV  316 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeE
Confidence            9999994  232  3333433345578999999 9999888774 4444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.03  Score=57.96  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             cCCCcEEEEEEccC------C------CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCC---C
Q 048199          374 HSANIVSSIEFDRD------D------QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKF---S  437 (495)
Q Consensus       374 ~h~~~V~~l~~~p~------~------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~---~  437 (495)
                      .|...|+.+.|.|-      +      -+++++...|.|.+||+...        ..+..+. +.+++-.++|-+.   +
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcc
Confidence            68999999999872      1      15778888999999999886        3333343 4456777777542   2


Q ss_pred             CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ..+|+.-..-.+|-+|+..+|+.+-.+..-.....++.+.|.|..++..-+..|.|
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v  180 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV  180 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence            35677766678999999999998877765556677788888887777666666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.29  E-value=0.001  Score=62.67  Aligned_cols=43  Identities=28%  Similarity=0.690  Sum_probs=36.6

Q ss_pred             ccccccccchhhh-c---cccCCCCccchhhHHhhhcCC--CCCCCCCC
Q 048199           52 DMLCPICMQIIKE-A---FLTACGHSFCYMCIITHLRNK--SDCPCCGH   94 (495)
Q Consensus        52 ~l~C~IC~~~~~~-P---v~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~   94 (495)
                      +|.|..|++.+-. |   -.|||.|+|..+|+..++.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            6899999999853 2   378999999999999998765  58999994

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0024  Score=56.47  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhh
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL   83 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~   83 (495)
                      .+.+.+.--|++|+..+.+||+++=||.||+.||.+++
T Consensus        37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i   74 (303)
T KOG3039|consen   37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI   74 (303)
T ss_pred             ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence            34555666799999999999999999999999999875

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=96.14  E-value=0.034  Score=49.12  Aligned_cols=47  Identities=28%  Similarity=0.709  Sum_probs=36.2

Q ss_pred             cccccccc-chhhhcc--cc--C-CCCccchhhHHhhhcCCC-CCC--CCCCcCcc
Q 048199           52 DMLCPICM-QIIKEAF--LT--A-CGHSFCYMCIITHLRNKS-DCP--CCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~-~~~~~Pv--~l--~-CGH~FC~~Ci~~~~~~~~-~CP--~Cr~~~~~   98 (495)
                      +-.||||. +.|-+|-  ++  | |-|-.|.+|+.+.+...+ .||  -|++-+..
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            45799997 4566773  22  5 999999999999988765 899  78776543

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.0021  Score=61.34  Aligned_cols=45  Identities=22%  Similarity=0.436  Sum_probs=34.9

Q ss_pred             Cccccccccchhhhc---cccCCCCccchhhHHhhhcCC--------CCCCCCCCc
Q 048199           51 KDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNK--------SDCPCCGHY   95 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~--------~~CP~Cr~~   95 (495)
                      ..+.|.||++...--   +.+||+|.||+.|+..|....        .+||.|+-.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            346799999999753   467999999999999987632        379876643

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=96.09  E-value=0.004  Score=58.71  Aligned_cols=63  Identities=19%  Similarity=0.381  Sum_probs=49.3

Q ss_pred             CCCCccccccccchhhhcc-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           48 ELDKDMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ...+.|.||||++.+.-|. ...=||.-|-.|-.+.   ..+||.||.++..   +.++.+..+++....
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~---~R~~amEkV~e~~~v  107 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SNKCPTCRLPIGN---IRCRAMEKVAEAVLV  107 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhh---cccCCcccccccc---HHHHHHHHHHHhcee
Confidence            3455688999999999995 4566999999998654   3589999999873   467888888776654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.07  E-value=0.0022  Score=64.65  Aligned_cols=133  Identities=17%  Similarity=0.256  Sum_probs=84.0

Q ss_pred             hhHHhhhhhhhcc-cCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC
Q 048199          346 ADFQSVLTTFTRY-SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT  424 (495)
Q Consensus       346 ~d~~~~lw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  424 (495)
                      .|+.+.|||+.+. .....-+.+..+    -...+.+++|..+.+++++|...+.++++|++..        ......-.
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--------~~~~~svn  194 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--------LDSVSSVN  194 (783)
T ss_pred             ccCCccceecccccCCCccccccccc----cccCccccccccCcchhhcccccchhhhhhhhhh--------hhhhhhhh
Confidence            4567889997532 111112222222    2234558888888889999999999999999954        11111112


Q ss_pred             CCCeEEEEEcCCCCCEEEEecCCCcEEEEe-CCC-CcceeecccccC----cEEEEEeecCCCCeEEEeeCCC
Q 048199          425 RSKLSCLSWNKFSKNRIASSDYEGIVTVWD-VTT-QQSVMEYEEHEK----RAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       425 ~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd-~~~-~~~~~~~~~h~~----~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ...+..+...|..++++++-. ||.|-+|| .++ ..++.++...+.    .+..++|+|.....+++.+.|.
T Consensus       195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence            223556777785577877766 99999999 333 234444443333    4899999997667788877654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.032  Score=59.94  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=73.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      .+..++.|+..|.+-.+|+....+.+      .......++|.+++|+.+ |.++..|-.+|.|.+||+..+..++.+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~------~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPL------HQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchh------hcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeee
Confidence            45567888888889999888752211      111234568999999999 99999999999999999999999999888


Q ss_pred             ccCcEEEEEe---ecCCCCeEEEeeCCCcE
Q 048199          467 HEKRAWSVDF---SRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       467 h~~~v~~v~~---~~~~g~~l~s~s~D~~v  493 (495)
                      |..+..++-+   .. ++..++++..-|.+
T Consensus       171 ~~ap~t~vi~v~~t~-~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTS-QNSKLLTSDTGGSF  199 (1206)
T ss_pred             cCCccceEEEEEEeC-CCcEEEEccCCCce
Confidence            8776666543   33 44567777666643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.99  E-value=0.13  Score=50.23  Aligned_cols=99  Identities=16%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEccccccCCCCcCCC
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV----------SRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ++.+.|.   ...+.+..+..|.    ...  .+ ++||++.|+.+..          +..|.+||+.+.        ..
T Consensus        28 ~v~ViD~---~~~~v~g~i~~G~----~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------~~   89 (352)
T TIGR02658        28 QVYTIDG---EAGRVLGMTDGGF----LPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------LP   89 (352)
T ss_pred             eEEEEEC---CCCEEEEEEEccC----CCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------cE
Confidence            5556665   3345555666533    122  24 8999997776655          789999999997        33


Q ss_pred             eeecCC--------CCCeEEEEEcCCCCCEEEEec-C-CCcEEEEeCCCCcceeeccc
Q 048199          419 VVEMPT--------RSKLSCLSWNKFSKNRIASSD-Y-EGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       419 ~~~~~~--------~~~i~~~~~~p~~~~~l~sg~-~-dg~v~iwd~~~~~~~~~~~~  466 (495)
                      +..+..        ......++++|| +.+|+... . +..|.++|+.+++.+..+.-
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            322221        223458899999 77777655 3 68999999999988887753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.99  E-value=0.0037  Score=49.93  Aligned_cols=48  Identities=27%  Similarity=0.566  Sum_probs=41.5

Q ss_pred             CccccccccchhhhccccC----CCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199           51 KDMLCPICMQIIKEAFLTA----CGHSFCYMCIITHLRNK---SDCPCCGHYLTN   98 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~----CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~   98 (495)
                      ....|-||.|...|...|+    ||...|..|-...|+..   +.||+|+..+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            3457999999999999873    99999999999988865   699999998865

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.95  E-value=0.0028  Score=66.39  Aligned_cols=50  Identities=22%  Similarity=0.608  Sum_probs=39.2

Q ss_pred             CCCCccccccccchhhh-----cc--ccCCCCccchhhHHhhhcCC--CCCCCCCCcCc
Q 048199           48 ELDKDMLCPICMQIIKE-----AF--LTACGHSFCYMCIITHLRNK--SDCPCCGHYLT   97 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~-----Pv--~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~   97 (495)
                      .++..-.|+||..++..     |-  .-.|.|-|+-+|+-+|+..+  .+||.||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            34445579999999972     32  33699999999999999876  58999997654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.91  E-value=0.26  Score=48.48  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=69.3

Q ss_pred             CcEEEEEEccCCCEEEEEe-CCCcEEEEEcccc--ccCCCCc-----CCCeeecCCCCCeEEEEEcCCCCCEEEEec-CC
Q 048199          377 NIVSSIEFDRDDQLFATAG-VSRRIKVFDFASV--VNEPADV-----HCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YE  447 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~--~~~~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~d  447 (495)
                      ..-..++++|++++|+++. .+++|.+|++...  .......     ..+...........++.|+|+ +.+++..+ ..
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGA  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCC
Confidence            3455799999999888876 4899999999873  0000000     000000122345889999999 66666544 44


Q ss_pred             CcEEEEeCCCCc--c--eeecc-cccCcEEEEEeecCCCCeEEEee-CCCcE
Q 048199          448 GIVTVWDVTTQQ--S--VMEYE-EHEKRAWSVDFSRTEPSMLVSGS-DDCKV  493 (495)
Q Consensus       448 g~v~iwd~~~~~--~--~~~~~-~h~~~v~~v~~~~~~g~~l~s~s-~D~~v  493 (495)
                      ..|.+|++....  .  ...+. ........+.|+| ++.+++... .++.|
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v  216 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTV  216 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcE
Confidence            579999997644  2  12222 2344578899999 888776655 35544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.84  E-value=0.17  Score=47.02  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             CcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCC-CCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          377 NIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR-SKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      .....|+|+|+++.| ++-+..+.|..|++......+.. .......... +..-.+++..+ ++++++....+.|.++|
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN-RRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE-EEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEE
T ss_pred             ccccceEECCcchheeecccccceeEEEeccccccceee-eeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEEC
Confidence            456799999999865 46778888999998754111100 0111122222 34788999998 88888877889999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      .. |+.+..+.--...+++++|...+...|+.
T Consensus       212 p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  212 PD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             TT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             CC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            87 88888777555689999995225454443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.74  E-value=0.15  Score=48.44  Aligned_cols=114  Identities=8%  Similarity=0.102  Sum_probs=75.9

Q ss_pred             CCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccC---CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcE
Q 048199          376 ANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNE---PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v  450 (495)
                      ...-+-|.|||++++..... .+++|-+|.++.....   ++.+...-..+....+...|..++| |.+|+.+... ..|
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d-GrFLYasNRg~dsI  268 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD-GRFLYASNRGHDSI  268 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC-CCEEEEecCCCCeE
Confidence            34567899999999776544 6999999999885222   2222222223445567788999999 8888887632 267


Q ss_pred             EEEeCCC--Cc--ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          451 TVWDVTT--QQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       451 ~iwd~~~--~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      -+|.+..  +.  .+.....+....+...|++ +|++|+.+..|+
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~s  312 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKS  312 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCC
Confidence            7777653  22  2222333445578889999 899998888654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.74  E-value=0.07  Score=59.14  Aligned_cols=111  Identities=11%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc-----------------------ccCCC--Cc--C-------CCe--
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV-----------------------VNEPA--DV--H-------CPV--  419 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~-----------------------~~~~~--~~--~-------~~~--  419 (495)
                      ...|.+++|+||+++|+....++++-+.+-+-.                       +++.+  +.  +       .+.  
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            356999999999999999888988888763311                       11100  00  0       000  


Q ss_pred             ----eecCCCCCeEEEEEcCCCCCEEEEecC---C---CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          420 ----VEMPTRSKLSCLSWNKFSKNRIASSDY---E---GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       420 ----~~~~~~~~i~~~~~~p~~~~~l~sg~~---d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                          ......+.-..++|-.| |.+||..+.   +   ..|+||+-. |....+-..-.+--.+++|.| .|.+||+...
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGD-G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~  276 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGD-GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQR  276 (928)
T ss_pred             ccccCccccCCCceEEEECCC-CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEE
Confidence                00112335568999999 999998875   3   479999954 664444433333345689999 9999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.66  E-value=0.15  Score=50.95  Aligned_cols=98  Identities=10%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             EEEEccCCC---EEEEEeCCC---------cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE--EecC
Q 048199          381 SIEFDRDDQ---LFATAGVSR---------RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA--SSDY  446 (495)
Q Consensus       381 ~l~~~p~~~---~l~s~s~d~---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~--sg~~  446 (495)
                      .+.|++-|.   +|++...|+         ++.+.++..        ..........++|.++.|+|+ +.-|+  -|-.
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g--------~s~~V~L~k~GPVhdv~W~~s-~~EF~VvyGfM  292 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG--------ESVSVPLLKEGPVHDVTWSPS-GREFAVVYGFM  292 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC--------ceEEEecCCCCCceEEEECCC-CCEEEEEEecc
Confidence            466877665   233444565         366666663        244555667899999999999 64443  3556


Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      =..+.|||.+ +.++..|.  +++-+++-|+| .|++|+-++.+.
T Consensus       293 PAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGN  333 (566)
T KOG2315|consen  293 PAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGN  333 (566)
T ss_pred             cceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCC
Confidence            6689999987 77777775  66778899999 999999888754

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.58  E-value=0.0054  Score=56.76  Aligned_cols=50  Identities=24%  Similarity=0.731  Sum_probs=37.8

Q ss_pred             Cccccccccchhhh----ccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCC
Q 048199           51 KDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQ  100 (495)
Q Consensus        51 ~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~  100 (495)
                      |+-.||+|.+.+.-    =.-.+||.-.|+-|....-+. +++||.||+.+..+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            34449999998752    245689999999998765443 479999999887654

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=95.46  E-value=0.0054  Score=63.28  Aligned_cols=66  Identities=27%  Similarity=0.586  Sum_probs=49.6

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHHHHHHHH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFLLDKLLK  112 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~~v~  112 (495)
                      ..+...+.|+||+..+.+|+.+.|-|.||..|+...+...   ..||+|+.......++--.....+++
T Consensus        16 ~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq   84 (684)
T KOG4362|consen   16 NAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK   84 (684)
T ss_pred             HHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence            3445678999999999999999999999999998766544   48999997776554443333334444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.42  E-value=0.027  Score=57.73  Aligned_cols=79  Identities=19%  Similarity=0.202  Sum_probs=61.1

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +.||++.|.-+.|+.+.+.|-|+..+|-|.||-+-.+     ..-.........+-|.+++|+.| |..|...-.||.|.
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg-----sW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG-----SWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVI  140 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecc-----cHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEE
Confidence            4489999999999999999999999999999998776     11111122234556899999999 88888888888887


Q ss_pred             EEeCC
Q 048199          452 VWDVT  456 (495)
Q Consensus       452 iwd~~  456 (495)
                      |=.+.
T Consensus       141 VGsvd  145 (1189)
T KOG2041|consen  141 VGSVD  145 (1189)
T ss_pred             EEeec
Confidence            76654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.40  E-value=0.34  Score=46.06  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=71.0

Q ss_pred             EEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCCCcEEEEeCC
Q 048199          379 VSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYEGIVTVWDVT  456 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~~  456 (495)
                      +-...|.|++++|++... --.|.+|++..+.-..    .....+.......-+.|||+ +.+.+.- =.+++|-+|..+
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----~~~~~v~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----ADPAEVKPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----ccccccCCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEc
Confidence            778889999999888754 3469999998662111    11122245567889999999 7766554 468999999987


Q ss_pred             CC-cceeeccc---------ccCcEEEEEeecCCCCeEEEee
Q 048199          457 TQ-QSVMEYEE---------HEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       457 ~~-~~~~~~~~---------h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      .. ..+..++.         -..+.-.|..++ ||++|..+.
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasN  262 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASN  262 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEec
Confidence            63 22222221         134667788889 999987764

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.0076  Score=57.65  Aligned_cols=50  Identities=18%  Similarity=0.448  Sum_probs=41.1

Q ss_pred             CCCccccccccchhhh---ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199           49 LDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTN   98 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~   98 (495)
                      +..-+.|||-.+.-++   |+.|.|||+.|+.-|.+...+.   .+||.|-.....
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~  386 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA  386 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence            4556789999988875   7899999999999999987764   589999765543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.046  Score=55.43  Aligned_cols=69  Identities=14%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEE-EEEeecCCCCeEEEeeCCCcEeC
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW-SVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      -...+..+.|+|. -.+||.+..+|.|.+..+. -+.+.++.-|...++ +++|.| ||+.||.|=.||+|+|
T Consensus        19 l~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   19 LPINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRL   88 (665)
T ss_pred             cccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEE
Confidence            3446888999999 8999999999999888877 677777876766666 999999 9999999999999985

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.26  E-value=0.15  Score=50.44  Aligned_cols=100  Identities=13%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CCCcEEEEEEccCCCEEEEE--eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC---Cc
Q 048199          375 SANIVSSIEFDRDDQLFATA--GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE---GI  449 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d---g~  449 (495)
                      -.++|-+.+|.|+++.|++.  -++-++.++|++..          +.......+=+.+-|+|. +.+++.++.|   |.
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~~Pe~~rNT~~fsp~-~r~il~agF~nl~gn  341 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFYFPEQKRNTIFFSPH-ERYILFAGFDNLQGN  341 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc----------eEEecCCcccccccccCc-ccEEEEecCCccccc
Confidence            36899999999988877654  47899999999885          233334445567889998 8888886655   46


Q ss_pred             EEEEeCCCCcce-eecccccCcEEEEEeecCCCCeEEEee
Q 048199          450 VTVWDVTTQQSV-MEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       450 v~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      |-+||......+ ..+.+-.  ..-+.|+| |+.++.+.-
T Consensus       342 i~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF~~~~~  378 (561)
T COG5354         342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQFYDTDT  378 (561)
T ss_pred             eEEeccCCceEEEEEeecCC--ceEeeccC-CceEEEecC
Confidence            999998754433 3565543  34467999 988876654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.23  E-value=0.041  Score=56.41  Aligned_cols=110  Identities=19%  Similarity=0.321  Sum_probs=74.8

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      -.+.+..+.+|++..++|.|+..+.|.+|-+......-.....+ ....|...|++++|+++ +..+++|+.-|+|..--
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~-~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP-CDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc-ccccCCceEEEEEeccc-ccEEeecCCCceEEEEE
Confidence            35667778889999999999999999999988752211111111 11136778999999999 99999999999998887


Q ss_pred             CCCC----cceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          455 VTTQ----QSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       455 ~~~~----~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      +.+.    ...+.+-.-.+.|-.+++.  .+.+|++..
T Consensus       153 L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  153 LDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             echhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence            7662    1223333345667677665  345555543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.02  E-value=0.23  Score=48.41  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             cEEEEEEccCCCEEEEEeC----------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEec-
Q 048199          378 IVSSIEFDRDDQLFATAGV----------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSD-  445 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~-  445 (495)
                      .+.-++++|+++.++....          ...|.++|..+.        ..+..+.-...++.++++|| +. +|++.. 
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--------kvi~~i~vG~~~~~iavS~D-gkp~lyvtn~  319 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--------KRLRKIELGHEIDSINVSQD-AKPLLYALST  319 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--------eEEEEEeCCCceeeEEECCC-CCeEEEEeCC
Confidence            3444999999887776431          246889998886        44444445568999999999 66 777665 


Q ss_pred             CCCcEEEEeCCCCcceeecc
Q 048199          446 YEGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~  465 (495)
                      .++.|.+.|..+++.+.++.
T Consensus       320 ~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       320 GDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCCcEEEEECcCCeEEeeec
Confidence            67889999999998888873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.99  E-value=0.1  Score=34.37  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=29.9

Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS  460 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~  460 (495)
                      ....|..++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence            3456899999999 899999999999999998 4543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.91  E-value=0.4  Score=44.51  Aligned_cols=108  Identities=9%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC--------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEEecC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVS--------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IASSDY  446 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~sg~~  446 (495)
                      .....+++++|+|++.++....        +.|..++.. +        ........-...+.++|+|+ +.. +++-+.
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--------~~~~~~~~~~~pNGi~~s~d-g~~lyv~ds~  154 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--------KVTVVADGLGFPNGIAFSPD-GKTLYVADSF  154 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--------EEEEEEEEESSEEEEEEETT-SSEEEEEETT
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--------eEEEEecCcccccceEECCc-chheeecccc
Confidence            4568899999999988877654        345555555 2        11111222345789999999 654 457778


Q ss_pred             CCcEEEEeCCCCcc-------eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 EGIVTVWDVTTQQS-------VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 dg~v~iwd~~~~~~-------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+.|..||+.....       +..+..-.+..-.+++.. +|++.++.-..+.|.
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIV  208 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEE
Confidence            88999999863221       222222223477888988 888777655555553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.90  E-value=0.016  Score=48.14  Aligned_cols=34  Identities=32%  Similarity=0.694  Sum_probs=24.3

Q ss_pred             CccccccccchhhhccccCC------------CCccc-hhhHHhhhc
Q 048199           51 KDMLCPICMQIIKEAFLTAC------------GHSFC-YMCIITHLR   84 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~C------------GH~FC-~~Ci~~~~~   84 (495)
                      |+.+||||+|.+-+.|.|-|            +-+|= ..|+.++.+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            46789999999999998754            43442 347876643

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.90  E-value=0.017  Score=53.75  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=40.3

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhh--hcCCCCCCCCCCcC
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITH--LRNKSDCPCCGHYL   96 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~--~~~~~~CP~Cr~~~   96 (495)
                      .-++...|-||-+-.+=-..+||||-.|.-|-.+.  +-....||.||...
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            34567889999999998889999999999998764  33457899999764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.89  E-value=0.052  Score=53.56  Aligned_cols=97  Identities=14%  Similarity=0.253  Sum_probs=73.4

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc------
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI------  449 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~------  449 (495)
                      .-++..+.|+|.|.+|++... .-|.+|+-...        ..+..+.| ..|..+.|+|. +.+|.+=+..+.      
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--------~~l~~~~~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--------AKLVRFRH-PDVKYLDFSPN-EKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             CcchhheeecCcchheehhhc-cceEEccccch--------hheeeeec-CCceecccCcc-cceeeeeccCCccChhhc
Confidence            456888999999999988764 45899988776        23344433 45888999999 889988655444      


Q ss_pred             ---------EEEEeCCCCcceeecccccCc--EE-EEEeecCCCCeE
Q 048199          450 ---------VTVWDVTTQQSVMEYEEHEKR--AW-SVDFSRTEPSML  484 (495)
Q Consensus       450 ---------v~iwd~~~~~~~~~~~~h~~~--v~-~v~~~~~~g~~l  484 (495)
                               +.+||+.+|..+..|.+-..+  .| -+.|+- +..++
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~  146 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYV  146 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhh
Confidence                     999999999999999887666  66 678887 54443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.84  E-value=0.0095  Score=47.64  Aligned_cols=34  Identities=24%  Similarity=0.657  Sum_probs=27.9

Q ss_pred             CCCCccccccccchhhhcc--ccCCCCccchhhHHh
Q 048199           48 ELDKDMLCPICMQIIKEAF--LTACGHSFCYMCIIT   81 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv--~l~CGH~FC~~Ci~~   81 (495)
                      .+.+.-.|++|...+.+++  ..||||.|+..|+.+
T Consensus        74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence            3456677999999999875  559999999999864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.79  E-value=0.18  Score=39.83  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+..|++|+.+++|+-.     ..+..+..      ++.|.++.-... ..|+.+-.+|+|-+|+-...         .
T Consensus        16 ~eLlvGs~D~~IRvf~~~-----e~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---------l   74 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD-----EIVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---------L   74 (111)
T ss_pred             ceEEEecCCcEEEEEeCC-----cEEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---------e
Confidence            447789999999998642     34566653      567888776654 67899999999999976543         0


Q ss_pred             eeecCCCCCeEEEEE---cCCCCCEEEEecCCCcEE
Q 048199          419 VVEMPTRSKLSCLSW---NKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~---~p~~~~~l~sg~~dg~v~  451 (495)
                      .. ......+.++.+   +.|+..-|++|-.+|.|-
T Consensus        75 WR-iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WR-IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ee-eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            00 112223445544   444345788898888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.78  E-value=0.46  Score=47.98  Aligned_cols=102  Identities=13%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             CCcEEEEEEccCCCEEE-EEeCC--CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cE
Q 048199          376 ANIVSSIEFDRDDQLFA-TAGVS--RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~-s~s~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v  450 (495)
                      .+.+....|+|||+.++ +.+.+  ..|.++|+.++        .......+........|+||+..++++....|  .|
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g--------~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK--------TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC--------cEEEcccCCCccCccEECCCCCEEEEEECCCCCceE
Confidence            34456678999998655 44444  44666676665        11111112222334579999434555554444  47


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .++|+.++....... ...  +...|+| +|.+|+-.+.
T Consensus       304 y~~dl~~g~~~rlt~-~g~--~~~~~SP-DG~~Ia~~~~  338 (419)
T PRK04043        304 FMKKLNSGSVEQVVF-HGK--NNSSVST-YKNYIVYSSR  338 (419)
T ss_pred             EEEECCCCCeEeCcc-CCC--cCceECC-CCCEEEEEEc
Confidence            777887766533222 111  1248999 9988876654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.70  E-value=0.012  Score=61.40  Aligned_cols=39  Identities=28%  Similarity=0.698  Sum_probs=33.9

Q ss_pred             cccccccchhhhcc-ccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199           53 MLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGH   94 (495)
Q Consensus        53 l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~   94 (495)
                      -.|+.|.-.+.-|+ -..|||+|++.|++   .....||.|+-
T Consensus       841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence            47999999999996 56999999999999   34568999976

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.61  E-value=0.24  Score=49.60  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeC---CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---CCCc
Q 048199          376 ANIVSSIEFDRDDQLFATAGV---SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---YEGI  449 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~dg~  449 (495)
                      ...|...+|.|.|+.|++-+.   -.++.+|-+.+.....    ..+..+ .....+.+-|+|. |.+++.+.   ..|.
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~----~lVk~~-dk~~~N~vfwsPk-G~fvvva~l~s~~g~  518 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP----SLVKEL-DKKFANTVFWSPK-GRFVVVAALVSRRGD  518 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch----hhhhhh-cccccceEEEcCC-CcEEEEEEecccccc
Confidence            567888999999998776443   3578888888531111    111111 1234678999999 77776654   4678


Q ss_pred             EEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          450 VTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       450 v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +.++|.....+..+ ...|. ..+.+-|.| .|.|++|+|.-...+
T Consensus       519 l~F~D~~~a~~k~~~~~eh~-~at~veWDP-tGRYvvT~ss~wrhk  562 (698)
T KOG2314|consen  519 LEFYDTDYADLKDTASPEHF-AATEVEWDP-TGRYVVTSSSSWRHK  562 (698)
T ss_pred             eEEEecchhhhhhccCcccc-ccccceECC-CCCEEEEeeehhhhc
Confidence            99999874222111 12243 356788999 999999998755443

>smart00502 BBC B-Box C-terminal domain

Probab=94.59  E-value=1.2  Score=36.22  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 048199          161 EEAERNMQILLDFLHCLRKQKVDELKEIQTD-LHYIKEDINAVERHRIDLYRARDRYSVKL  220 (495)
Q Consensus       161 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~-~~~l~~~i~~l~~~~~~l~~~~~~~~~~~  220 (495)
                      ..+...|+.|+.+|++.+..+...++..... ...|..++..++..+..+...+......+
T Consensus        42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l  102 (127)
T smart00502       42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL  102 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567889999999999999999999988777 58899999999999988888877655544

Coiled coil region C-terminal to (some) B-Box domains

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.026  Score=50.50  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=61.6

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ...+.|-|.|-++++++||+.|-|=+|-+.=|+.+++.-+ .-|+.|.+++..++.||+.+...|..+..
T Consensus       207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~  276 (284)
T KOG4642|consen  207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLK  276 (284)
T ss_pred             cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHH
Confidence            3456788999999999999999999999999999988754 78999999999999999999999888754

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.49  E-value=0.02  Score=38.31  Aligned_cols=43  Identities=28%  Similarity=0.624  Sum_probs=22.9

Q ss_pred             ccccccccchhhhcc-ccCCCCccchhhHHhhhcC-----CCCCCCCCCc
Q 048199           52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRN-----KSDCPCCGHY   95 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~-----~~~CP~Cr~~   95 (495)
                      .|.|||....++-|+ ...|-|.-|..-. .|+..     .-.||+|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~-~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLE-SFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHH-HHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHH-HHHHHhhccCCeECcCCcCc
Confidence            478999999999998 6689999887642 22221     1379999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.37  E-value=0.0089  Score=60.41  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=76.2

Q ss_pred             cCCCcEEEEEEcc-CCCEEEEEe----CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199          374 HSANIVSSIEFDR-DDQLFATAG----VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p-~~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      +|....++++|++ |.+.||.|-    .|..++|||+.+......  ..+....+......+++|-.+ ..++.+|....
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk--e~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr  176 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK--ESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSR  176 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--cccccccccccCccccccccC-cchhhcccccc
Confidence            6788999999998 555666552    256799999998733221  111121124445679999977 88899999999


Q ss_pred             cEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          449 IVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       449 ~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .|+++|++. ......+  .+..+..+...|..+.++++-+ ||.|.
T Consensus       177 ~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iA  220 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIA  220 (783)
T ss_pred             hhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCcee
Confidence            999999983 2222223  2445556666776677887766 55543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.36  E-value=0.32  Score=52.27  Aligned_cols=97  Identities=9%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc-eeecccc
Q 048199          389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS-VMEYEEH  467 (495)
Q Consensus       389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~-~~~~~~h  467 (495)
                      ..-+.|-.+..+..||.+-..+.+.  ......+.......|++-..+ | +||.|+.+|.|++||- .|.. -..|.+-
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v--~~~~k~Y~~~~~Fs~~aTt~~-G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l  617 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLV--DSQSKQYSSKNNFSCFATTED-G-YIAVGSNKGDIRLYDR-LGKRAKTALPGL  617 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCcee--eccccccccCCCceEEEecCC-c-eEEEEeCCCcEEeecc-cchhhhhcCCCC
Confidence            3455677788999999986411111  111122234445777777765 4 8999999999999994 4433 3445577


Q ss_pred             cCcEEEEEeecCCCCeEEEeeCCC
Q 048199          468 EKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       468 ~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ..+|.+|+.+. ||.+|+..+...
T Consensus       618 G~pI~~iDvt~-DGkwilaTc~ty  640 (794)
T PF08553_consen  618 GDPIIGIDVTA-DGKWILATCKTY  640 (794)
T ss_pred             CCCeeEEEecC-CCcEEEEeecce
Confidence            88999999999 999988776543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.34  E-value=0.24  Score=49.37  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      .+..++.++.|+.+..+|..++.....   .  .... .....+....   +..|+.++.+|.|.+||..+|+.+..+..
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~---~--~~~~-~~~~ssp~i~---g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWK---N--DELK-YRQLTAPAVV---GGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEc---c--cccc-CCccccCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            466777778899999999987611100   0  0000 0111122222   56889999999999999999999988876


Q ss_pred             ccCcEEE-EEeecCCCCeEEEeeCCCcEe
Q 048199          467 HEKRAWS-VDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       467 h~~~v~~-v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +...++. ..+.  + ..|+.++.||.|.
T Consensus       349 ~~~~~~~sp~~~--~-~~l~v~~~dG~l~  374 (377)
T TIGR03300       349 DGSGIASPPVVV--G-DGLLVQTRDGDLY  374 (377)
T ss_pred             CCCccccCCEEE--C-CEEEEEeCCceEE
Confidence            6644433 2333  3 4588888999875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.31  E-value=0.14  Score=33.70  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=28.9

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS  407 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~  407 (495)
                      ...|..++|+|...++|.+..||.|.+|.++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45699999999999999999999999999943

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=94.26  E-value=0.011  Score=64.52  Aligned_cols=47  Identities=32%  Similarity=0.794  Sum_probs=41.1

Q ss_pred             CCCCccccccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199           48 ELDKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGH   94 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~   94 (495)
                      .+.+...|+||++.+.+- -+..|||.||.+|++-|+..+..||.|+.
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            445566999999999965 47799999999999999999999999983

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.19  E-value=0.06  Score=56.70  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=41.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF  436 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~  436 (495)
                      .|+...++++|+-+.+.|+.|+..|.|++|++.++.       .......|.+.|+-+.=+.|
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVD 1154 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCC
Confidence            678899999999999999999999999999999982       11122235555555554444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.12  E-value=0.22  Score=44.47  Aligned_cols=101  Identities=10%  Similarity=0.037  Sum_probs=62.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      .+..++.|+.++.|.+|...-.     +.+.-....... .|-+.--.-+.+.+..+|..||.|+.|++.-++.+.....
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~e-~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGEE-SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             cCceEEeecccceEEEecCCcc-----chHHHhhhcccc-cceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence            3557888999999999998732     001111111111 2222222223367899999999999999998887777777


Q ss_pred             cc-CcEEEEEeecCCCCeEEEe--eCCCcEe
Q 048199          467 HE-KRAWSVDFSRTEPSMLVSG--SDDCKVL  494 (495)
Q Consensus       467 h~-~~v~~v~~~~~~g~~l~s~--s~D~~v~  494 (495)
                      |+ .++.....+. .+.+|+.+  |.|..++
T Consensus       143 h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k  172 (238)
T KOG2444|consen  143 HNFESGEELIVVG-SDEFLKIADTSHDRVLK  172 (238)
T ss_pred             ccCCCcceeEEec-CCceEEeeccccchhhh
Confidence            76 4554444444 45566666  5555443

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=0.037  Score=48.36  Aligned_cols=47  Identities=23%  Similarity=0.601  Sum_probs=37.8

Q ss_pred             Cccccccccchhhh--ccccCCCCccchhhHHhhhcCC--------CCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNK--------SDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~--------~~CP~Cr~~~~   97 (495)
                      ..-.|.+|.-.+..  -+-|.|-|.|...|+..|..+-        ..||.|..++-
T Consensus        49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            34569999999874  4677899999999999987642        38999988764

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.93  E-value=2.4  Score=40.63  Aligned_cols=20  Identities=30%  Similarity=0.873  Sum_probs=15.6

Q ss_pred             ccccccchhhhccccCCCCccchhhHHh
Q 048199           54 LCPICMQIIKEAFLTACGHSFCYMCIIT   81 (495)
Q Consensus        54 ~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~   81 (495)
                      .|+||.        .+..+.||..|+..
T Consensus         1 ~C~iC~--------~~~~~~~C~~C~~~   20 (302)
T PF10186_consen    1 QCPICH--------NSRRRFYCANCVNN   20 (302)
T ss_pred             CCCCCC--------CCCCCeECHHHHHH
Confidence            499998        45667788888886

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=93.78  E-value=1.2  Score=41.12  Aligned_cols=94  Identities=11%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCC-C----------cEEEEEcccc---ccC-------CC------CcC--CCeee---
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVS-R----------RIKVFDFASV---VNE-------PA------DVH--CPVVE---  421 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d-~----------~i~vwd~~~~---~~~-------~~------~~~--~~~~~---  421 (495)
                      ++...|.++.|+|.-++|+.||.. .          -+..|.+-++   .+.       ..      ...  .....   
T Consensus       145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence            346789999999988877766542 1          1455555433   000       00      000  00001   


Q ss_pred             -cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199          422 -MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE  468 (495)
Q Consensus       422 -~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~  468 (495)
                       ....+.|..+..+|| +..|++...+|.|.+|++.+......+.-++
T Consensus       225 ~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             cccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence             123567999999999 9999999999999999999877666655443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=93.75  E-value=0.4  Score=50.99  Aligned_cols=92  Identities=12%  Similarity=0.252  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~  465 (495)
                      ++..++-|+....+-.+|+++.        ....... ..+++.-+..+   +.++.+|+..|+|.+-|.++.+.+.+|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~--------~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTE--------KETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFD  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccc--------eeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeee
Confidence            4557778888888889999886        1111111 22236666665   7799999999999999999999999999


Q ss_pred             cccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          466 EHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .|++.|..++.   .|+.|+|+|..+.
T Consensus       215 aHs~siSDfDv---~GNlLitCG~S~R  238 (1118)
T KOG1275|consen  215 AHSGSISDFDV---QGNLLITCGYSMR  238 (1118)
T ss_pred             ccccceeeeec---cCCeEEEeecccc
Confidence            99999987665   6789999987543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.57  E-value=1.1  Score=47.42  Aligned_cols=135  Identities=7%  Similarity=0.037  Sum_probs=84.1

Q ss_pred             HhhhhhhhcccCce---EEE--EeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC
Q 048199          349 QSVLTTFTRYSRLR---VIA--ELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP  423 (495)
Q Consensus       349 ~~~lw~~~~~~~~~---~~~--~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  423 (495)
                      .+++|++.+-++..   .+.  .+.+........++.++++|.+-..+|.|-.+|.|..+.=+-. ++  .+........
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-RD--rgsr~~~~~~  169 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-RD--RGSRQDYSHR  169 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch-hc--cccceeeecc
Confidence            68899987654433   121  1111111124678999999999889999999999988853321 00  0011122234


Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ...+|+++.+..+....++.+. ...|.+|.+. |+.  +..+..|...++|..|++..+.++++++
T Consensus       170 ~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  170 GKEPITGLALRSDGKSVLFVAT-TEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             CCCCceeeEEecCCceeEEEEe-cceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence            5568999999888444233333 3579999987 443  5557778889999999973333444443

>PHA03096 p28-like protein; Provisional

Probab=93.54  E-value=0.033  Score=52.26  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             cccccccchhhhc-----c--cc-CCCCccchhhHHhhhcCC---CCCCCCCCc
Q 048199           53 MLCPICMQIIKEA-----F--LT-ACGHSFCYMCIITHLRNK---SDCPCCGHY   95 (495)
Q Consensus        53 l~C~IC~~~~~~P-----v--~l-~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~   95 (495)
                      -.|.||++...+-     .  +| .|-|.||..||..|....   ..||.|+..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~  232 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL  232 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence            5799999988742     1  33 699999999999998764   356666553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.48  E-value=0.058  Score=56.47  Aligned_cols=70  Identities=14%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      +++++|||..-+|+.|=.-|-+.+|...+.       ........|..+|..+.|+++ |..++|++.-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~-------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCc-------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence            567999999889999988899999998775       223334468889999999999 9999999999999999754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.44  E-value=1.1  Score=43.11  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             CcEEEEEEccCCCEEEEE-eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC-cEEEEe
Q 048199          377 NIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG-IVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd  454 (495)
                      ..-.+|+|+||++.|..+ +..+.|.-|++.............+......+..-.++...+ +++.+++-.+| .|.+|+
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC-CCEEEecccCCceEEEEC
Confidence            344689999999766655 445778888876310001010111111123345556677777 77776666665 899999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      .. |+.+..+.-....+.+++|--.+.+.|+..+
T Consensus       242 pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         242 PD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            88 9999888877678889999643445554444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.32  E-value=0.27  Score=53.15  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE  421 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  421 (495)
                      +-|.+.+.+.+.|...  ...+   +..++  ...++|++++|+.+|..++.|-.+|.|.+||+..+.     .......
T Consensus       103 vi~Ts~ghvl~~d~~~--nL~~---~~~ne--~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-----~l~~i~e  170 (1206)
T KOG2079|consen  103 VIGTSHGHVLLSDMTG--NLGP---LHQNE--RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-----ILKVITE  170 (1206)
T ss_pred             EEEcCchhhhhhhhhc--ccch---hhcCC--ccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-----ceeeeee
Confidence            3455555666766642  1111   12222  347899999999999999999999999999999860     0111111


Q ss_pred             cCC-CCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          422 MPT-RSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       422 ~~~-~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      .++ ...+..+.|..+ +..+++++..|.
T Consensus       171 ~~ap~t~vi~v~~t~~-nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQ-NSKLLTSDTGGS  198 (1206)
T ss_pred             cCCccceEEEEEEeCC-CcEEEEccCCCc
Confidence            122 223555666666 557888887776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=93.27  E-value=0.57  Score=52.14  Aligned_cols=105  Identities=22%  Similarity=0.306  Sum_probs=70.4

Q ss_pred             CCcEEEEEEccCCCEEEEEeC---C---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---
Q 048199          376 ANIVSSIEFDRDDQLFATAGV---S---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---  446 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~---d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---  446 (495)
                      .+.-..|+|-.||.+||+.+.   +   +.+|||+-+...   .....++.     +--.+++|.|. |++||+...   
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L---~stSE~v~-----gLe~~l~WrPs-G~lIA~~q~~~~  279 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL---QSTSEPVD-----GLEGALSWRPS-GNLIASSQRLPD  279 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE---EeccccCC-----CccCCccCCCC-CCEEEEEEEcCC
Confidence            345568999999999998876   2   579999877421   11111211     22347899999 999988764   


Q ss_pred             CCcEEEEeCCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          447 EGIVTVWDVTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ...|.+|. ++|..-..|    ......|..+.|++ |+.+||..-.|.
T Consensus       280 ~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~  326 (928)
T PF04762_consen  280 RHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR  326 (928)
T ss_pred             CcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC
Confidence            33566776 445433333    23456899999999 999998876554

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.08  E-value=0.054  Score=53.58  Aligned_cols=48  Identities=38%  Similarity=0.737  Sum_probs=34.6

Q ss_pred             ccccccccchhhhc----cccCCCCccchhhHHhhhcCC------CCCCC--CCCcCccC
Q 048199           52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNK------SDCPC--CGHYLTNN   99 (495)
Q Consensus        52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~------~~CP~--Cr~~~~~~   99 (495)
                      ..+|.||..-...+    .+..|||-||..|..++++..      .+||.  |...++..
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~  205 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE  205 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence            56799999444333    256899999999999998843      47875  65655543

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.04  E-value=0.05  Score=50.16  Aligned_cols=50  Identities=18%  Similarity=0.513  Sum_probs=40.2

Q ss_pred             CCCCccccccccchhhh---ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCc
Q 048199           48 ELDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLT   97 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~   97 (495)
                      .+..-++||+-.+.-++   |+++.|||+.-+.-+.+.-++.   ++||.|-....
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~  387 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSK  387 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence            45667899999988875   7899999999999998876654   58999965443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.85  E-value=0.48  Score=30.31  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCC--CEEEEecCCCcEEEEeCCC
Q 048199          426 SKLSCLSWNKFSK--NRIASSDYEGIVTVWDVTT  457 (495)
Q Consensus       426 ~~i~~~~~~p~~~--~~l~sg~~dg~v~iwd~~~  457 (495)
                      +.+.++.|+|..+  .+|+-.-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3578999998755  6888888889999999995

It contains a characteristic DLL sequence motif.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.80  E-value=0.23  Score=52.51  Aligned_cols=63  Identities=16%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      +....+|++|+.+ .++|+.|+..|.|++|++.+|.......+|...|+-|.=+. +|.++.+.+
T Consensus      1100 ~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSS 1162 (1516)
T ss_pred             cccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccC-Ccceeeeec
Confidence            5567899999998 88999999999999999999999999999999999998887 777766654

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=92.79  E-value=0.083  Score=38.02  Aligned_cols=46  Identities=24%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             cccccccchhh-----hcccc--CCCCccchhhHHhhhc-CCCCCCCCCCcCcc
Q 048199           53 MLCPICMQIIK-----EAFLT--ACGHSFCYMCIITHLR-NKSDCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~-----~Pv~l--~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~   98 (495)
                      -.|.||++..-     +|.+.  -|+-..|+.|.+--.+ ..+.||.|+.++..
T Consensus        10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr   63 (80)
T PF14569_consen   10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR   63 (80)
T ss_dssp             -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred             cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence            46999999885     45433  6999999999985443 45789999987754

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.72  E-value=0.063  Score=49.68  Aligned_cols=43  Identities=28%  Similarity=0.708  Sum_probs=37.4

Q ss_pred             ccccccccchhh----hccccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199           52 DMLCPICMQIIK----EAFLTACGHSFCYMCIITHLRNKSDCPCCGH   94 (495)
Q Consensus        52 ~l~C~IC~~~~~----~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~   94 (495)
                      ...||||.+.+.    +|..++|||.-..+|.+...-....||.|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            455999999875    4668899999999999999887899999988

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=92.70  E-value=0.097  Score=43.66  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CCccccccccchhhhccccC--CCCcc---chhhHHhhhcCC--CCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKEAFLTA--CGHSF---CYMCIITHLRNK--SDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~--CGH~F---C~~Ci~~~~~~~--~~CP~Cr~~~~~   98 (495)
                      ..+-.|-||.+.-. +..-|  |-.+.   ++.|+++|+..+  ..||+|+.++..
T Consensus         6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            34567999998864 33334  54433   789999999876  489999998865

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.69  E-value=1.3  Score=44.68  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             EEEEEEccCCCEEEEE-eCCCc----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC------
Q 048199          379 VSSIEFDRDDQLFATA-GVSRR----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE------  447 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~-s~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d------  447 (495)
                      +..+.++|++++++.+ +..|.    |+++|+.++        ..+...-......++.|.+++..++++...+      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------cCcCCcccccccceEEEeCCCCEEEEEEeCccccccc
Confidence            4467899999987744 44444    999999987        1111110111123499999944445554333      


Q ss_pred             ----CcEEEEeCCCCcce--eecccccCc--EEEEEeecCCCCeEEEeeC
Q 048199          448 ----GIVTVWDVTTQQSV--MEYEEHEKR--AWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       448 ----g~v~iwd~~~~~~~--~~~~~h~~~--v~~v~~~~~~g~~l~s~s~  489 (495)
                          ..|..|.+.+...-  ..|.+....  ...+..++ ++.+|+..+.
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~  246 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSS  246 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEE
T ss_pred             CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEE
Confidence                23788888765432  344443332  56788888 8888765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.65  E-value=1.8  Score=39.60  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      ..+++.||..+.+.--|..++        ...-..-...++-+-+.- - +++++.|+++|.+.+.++++|.....|..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG--------~~~We~ilg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSG--------NLIWEAILGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCC--------cEEeehhhCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            456777788888888887776        111111112223222221 1 778999999999999999999877777643


Q ss_pred             cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          468 EKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       468 ~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...-......+ ++..+..|+.|+..+
T Consensus        93 ~~vk~~a~~d~-~~glIycgshd~~~y  118 (354)
T KOG4649|consen   93 ETVKVRAQCDF-DGGLIYCGSHDGNFY  118 (354)
T ss_pred             hhhccceEEcC-CCceEEEecCCCcEE
Confidence            22111223344 788999999998764

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.64  E-value=0.099  Score=47.54  Aligned_cols=36  Identities=19%  Similarity=0.805  Sum_probs=31.3

Q ss_pred             CccccccccchhhhccccCC----CCccchhhHHhhhcCC
Q 048199           51 KDMLCPICMQIIKEAFLTAC----GHSFCYMCIITHLRNK   86 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~C----GH~FC~~Ci~~~~~~~   86 (495)
                      ..|.|.+|.|.+.|-....|    .|-||..|-...++.+
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q  306 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ  306 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence            45899999999999876666    8999999999988764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.59  E-value=0.61  Score=51.22  Aligned_cols=96  Identities=22%  Similarity=0.350  Sum_probs=63.9

Q ss_pred             EEEEEccCCCEEEEEe----CC-CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---CCCcEE
Q 048199          380 SSIEFDRDDQLFATAG----VS-RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---YEGIVT  451 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~dg~v~  451 (495)
                      .+|.|--||++|++..    .+ ++|+|||-+...+.   ...+...     .-.+++|-|. |..+++-.   .|+.|.
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns---~se~~~~-----l~~~LsWkPs-gs~iA~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNS---TSEPVEG-----LQHSLSWKPS-GSLIAAIQCKTSDSDIV  269 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhc---ccCcccc-----cccceeecCC-CCeEeeeeecCCCCcEE
Confidence            3588999999999832    24 89999998832111   1122222     2348999998 88888743   455788


Q ss_pred             EEeCCCCc----ceeecccccCcEEEEEeecCCCCeEEE
Q 048199          452 VWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       452 iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      +|.-+ |.    .+-.+......|..++|+. ++..|+.
T Consensus       270 ffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv  306 (1265)
T KOG1920|consen  270 FFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDILAV  306 (1265)
T ss_pred             EEecC-CccccccccCCcccccchheeeecC-CCCceee
Confidence            88743 43    3333333455599999999 9998887

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.57  E-value=0.047  Score=44.30  Aligned_cols=43  Identities=23%  Similarity=0.478  Sum_probs=33.8

Q ss_pred             ccccccccchhhh--cc-ccCCC------CccchhhHHhhhcCCCCCCCCCC
Q 048199           52 DMLCPICMQIIKE--AF-LTACG------HSFCYMCIITHLRNKSDCPCCGH   94 (495)
Q Consensus        52 ~l~C~IC~~~~~~--Pv-~l~CG------H~FC~~Ci~~~~~~~~~CP~Cr~   94 (495)
                      .+.|.||++...+  -| .++||      |.||..|+.+|-....+-|.=|.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~   77 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRN   77 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence            6789999999998  44 56777      67999999999665566776554

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.55  E-value=1  Score=47.56  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=60.9

Q ss_pred             CcEEEEEEccCCCEEEEEe------CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----
Q 048199          377 NIVSSIEFDRDDQLFATAG------VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY----  446 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~----  446 (495)
                      ..+.+.+++|+|+.++..-      .|..-.||-...+     +...++  . .....+.-.|+|| +..|++...    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-----g~~~~l--t-~g~~~t~PsWspD-G~~lw~v~dg~~~  420 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-----GVAVQV--L-EGHSLTRPSWSLD-ADAVWVVVDGNTV  420 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-----Ccceee--e-cCCCCCCceECCC-CCceEEEecCcce
Confidence            4678899999999877654      2444455543322     001121  1 1223677889999 555555432    


Q ss_pred             --------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 --------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 --------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                              .+.+.+.++..++...   ...+.|..+.|+| ||..|+-.. ++.|.
T Consensus       421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~  471 (591)
T PRK13616        421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVY  471 (591)
T ss_pred             EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEE
Confidence                    2234334555444433   2355799999999 999877655 35554

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.42  E-value=0.091  Score=33.86  Aligned_cols=38  Identities=26%  Similarity=0.721  Sum_probs=24.3

Q ss_pred             cccccchhhhccccC---CCCccchhhHHhhhcCCC--CCCCC
Q 048199           55 CPICMQIIKEAFLTA---CGHSFCYMCIITHLRNKS--DCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~Pv~l~---CGH~FC~~Ci~~~~~~~~--~CP~C   92 (495)
                      |.+|.++...-+.-+   |+=.+...|+.+|+....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678888888776554   888899999999998765  79988

; PDB: 3NW0_A 2CT0_A.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=92.29  E-value=0.39  Score=50.11  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCC-----------CCEEEEe
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFS-----------KNRIASS  444 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~-----------~~~l~sg  444 (495)
                      ..-.++.|+|.| +|+.|+ ...|.+-|..+.        ..+..+ .|...|+.+.|.|-.           ..+|+++
T Consensus        16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~--------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa   85 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSL--------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA   85 (1062)
T ss_pred             ccccccccCccc-eEEEec-CceEEEEehhhh--------hhhhccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence            335678888865 666665 457888888775        222222 466789999998741           3478999


Q ss_pred             cCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199          445 DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      +..|.|.+||+..+..+..+..|.+++-.++|-+
T Consensus        86 D~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen   86 DISGRIILVDFVLASVINWLSHSNDSVQDLCWVP  119 (1062)
T ss_pred             cccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence            9999999999999999999999999999998865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.24  E-value=1.8  Score=41.06  Aligned_cols=99  Identities=12%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             EEEEcc-CCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEe-----cCCCcEE
Q 048199          381 SIEFDR-DDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASS-----DYEGIVT  451 (495)
Q Consensus       381 ~l~~~p-~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg-----~~dg~v~  451 (495)
                      +++.+| ....++.+-.-|+ ..+||..++.       .........+.  .---.|++| |.+|++.     ...|.|-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~-------~~~~~~a~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQ-------LLQRLWAPPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-------eeeEEcCCCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEE
Confidence            567788 4555666666555 6678888761       11111111111  123579999 8888873     4467899


Q ss_pred             EEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          452 VWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       452 iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      |||.. +...+..|..|.-.-..+.+.| ||..|+.+-
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVAN  117 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVAN  117 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEc
Confidence            99998 6677888888776667788999 987777653

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.13  E-value=0.065  Score=45.05  Aligned_cols=49  Identities=27%  Similarity=0.621  Sum_probs=34.1

Q ss_pred             CCccccccccchhhh---c--c--ccCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKE---A--F--LTACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~---P--v--~l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   98 (495)
                      ++..-|.||.-+--+   |  +  .+.||..|.+-|+..|+..-           +.||.|..++.+
T Consensus       163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            334446666544322   2  2  45899999999999998741           379999998865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.06  E-value=0.46  Score=46.51  Aligned_cols=90  Identities=10%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC-------cCCCee-ecCCCCCeEEEEEcCCCCCEEEEec
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD-------VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-------~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~  445 (495)
                      -|..+|..+.+.|.+..+++....|.|..|.....++.+..       +..... .........++.|+|+ +..|.+-.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~  220 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLN  220 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccC
Confidence            38999999999999999999999999999998853222211       001111 1123455789999999 99999999


Q ss_pred             CCCcEEEEeCCCCcceeec
Q 048199          446 YEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~  464 (495)
                      .|..|+++++++|..++.+
T Consensus       221 ~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cccEEEEEEeccchhhhhh
Confidence            9999999999998766655

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.02  E-value=4.8  Score=42.51  Aligned_cols=15  Identities=20%  Similarity=0.696  Sum_probs=11.6

Q ss_pred             CCCCCCCCCCcCccC
Q 048199           85 NKSDCPCCGHYLTNN   99 (495)
Q Consensus        85 ~~~~CP~Cr~~~~~~   99 (495)
                      ....||.|.+.+...
T Consensus       283 ~~~~Cp~C~~~~~~~  297 (562)
T PHA02562        283 KGGVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCCCcCCCc
Confidence            356899999998653

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=91.65  E-value=0.029  Score=51.31  Aligned_cols=47  Identities=28%  Similarity=0.692  Sum_probs=37.6

Q ss_pred             ccccccccchhhh-c-c-ccCCCCccchhhHHhhhcC-----------------------CCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKE-A-F-LTACGHSFCYMCIITHLRN-----------------------KSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~-P-v-~l~CGH~FC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~   98 (495)
                      ...|.||+--|.+ | . .++|-|-|...|+.+|+..                       .-.||+||.++..
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            4579999999986 4 2 5689999999999998863                       0159999998865

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.072  Score=49.04  Aligned_cols=41  Identities=27%  Similarity=0.681  Sum_probs=28.7

Q ss_pred             ccccccchhhh-ccccCCCCccchhhHHhhhcCCCCCCCCCCcC
Q 048199           54 LCPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCCGHYL   96 (495)
Q Consensus        54 ~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~   96 (495)
                      .|--|.-.+.- -.++||-|+||..|..-.  .-+.||.|-.++
T Consensus        92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence            46556544332 258899999999997642  246899997765

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=91.59  E-value=0.037  Score=39.31  Aligned_cols=42  Identities=31%  Similarity=0.591  Sum_probs=24.7

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ++.||.|...+. +..   ||-+|..|-..+. ....||.|.+++..
T Consensus         1 e~~CP~C~~~L~-~~~---~~~~C~~C~~~~~-~~a~CPdC~~~Le~   42 (70)
T PF07191_consen    1 ENTCPKCQQELE-WQG---GHYHCEACQKDYK-KEAFCPDCGQPLEV   42 (70)
T ss_dssp             --B-SSS-SBEE-EET---TEEEETTT--EEE-EEEE-TTT-SB-EE
T ss_pred             CCcCCCCCCccE-EeC---CEEECccccccce-ecccCCCcccHHHH
Confidence            468999998854 322   8999999988754 34679999999864

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.46  E-value=0.13  Score=46.02  Aligned_cols=51  Identities=20%  Similarity=0.472  Sum_probs=40.8

Q ss_pred             Cccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199           51 KDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP  103 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~  103 (495)
                      -.++|||-+-.+..-.    .-+|||+|-.+-+.+.-  ...|++|+..+...+.++
T Consensus       110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEe
Confidence            4578999998887653    44899999999888764  568999999998877543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.45  E-value=2  Score=43.55  Aligned_cols=51  Identities=12%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      |.+|+..+ ++.|.+||+.++..+..+...  .|..|.|++ +|.+++-.+.|..
T Consensus       117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~~i  167 (443)
T PF04053_consen  117 GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKDSI  167 (443)
T ss_dssp             SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S-SE
T ss_pred             CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCCeE
Confidence            45555554 348999999999999999743  489999999 9999998887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.39  E-value=2  Score=39.79  Aligned_cols=112  Identities=11%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCCCC-cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPAD-VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~~~-~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      .++..+-.|+|+|.++.|+.+-...-.+||.+....  ..+.. ...... ....-..+.++.++|..+++++-++.+..
T Consensus       115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~  194 (248)
T PF06977_consen  115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL  194 (248)
T ss_dssp             --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred             CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence            356779999999987777777777788888887621  00000 000000 01123458899999998888888889999


Q ss_pred             EEEEeCCCCcceeecc--c--cc-----CcEEEEEeecCCCCeEEEe
Q 048199          450 VTVWDVTTQQSVMEYE--E--HE-----KRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~--~--h~-----~~v~~v~~~~~~g~~l~s~  487 (495)
                      |.++| .+|+.+..+.  .  |.     ...-.|+|.+ +|++.++.
T Consensus       195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs  239 (248)
T PF06977_consen  195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS  239 (248)
T ss_dssp             EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE
T ss_pred             EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc
Confidence            99999 5677655442  1  11     2356899999 88776665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PHA02862 5L protein; Provisional

Probab=91.28  E-value=0.12  Score=42.23  Aligned_cols=46  Identities=20%  Similarity=0.509  Sum_probs=34.2

Q ss_pred             ccccccchhhhccccCCC-----CccchhhHHhhhcCC--CCCCCCCCcCccCC
Q 048199           54 LCPICMQIIKEAFLTACG-----HSFCYMCIITHLRNK--SDCPCCGHYLTNNQ  100 (495)
Q Consensus        54 ~C~IC~~~~~~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~~  100 (495)
                      .|-||.+.-.+.+ -||.     .--++.|+.+|+..+  ..||+|+.++....
T Consensus         4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~   56 (156)
T PHA02862          4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK   56 (156)
T ss_pred             EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence            6999999876543 4443     234689999999865  48999999987543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.06  E-value=0.086  Score=33.92  Aligned_cols=31  Identities=35%  Similarity=0.894  Sum_probs=23.0

Q ss_pred             ccCC-CCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           67 LTAC-GHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        67 ~l~C-GH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .+.| -|-.|..|+...+..+..||+|++++.
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP   46 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP   46 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence            4456 678899999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=90.97  E-value=4.4  Score=39.29  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ..++|++|+-- .+. |+.+ ....|.+|++....     ...+.........+.++...   +++|+.|+....|.++.
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~-----~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK-----TLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS-----SEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred             ecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc-----cchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence            36889998866 343 4333 35899999998861     01222333344467777777   56999999888888774


Q ss_pred             CCC-Ccceeeccc--ccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTT-QQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~-~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+. +..+..+..  ...+++++.|-+ ++..++.+..+|.|.
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~  197 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLF  197 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEE
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEE
Confidence            432 222333222  355788888886 556888888888875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.92  E-value=0.086  Score=55.77  Aligned_cols=37  Identities=30%  Similarity=0.661  Sum_probs=29.6

Q ss_pred             CCCCccccccccchhh-hcc-ccCCCCccchhhHHhhhc
Q 048199           48 ELDKDMLCPICMQIIK-EAF-LTACGHSFCYMCIITHLR   84 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~-~Pv-~l~CGH~FC~~Ci~~~~~   84 (495)
                      .++..-.|.+|...+- .|. ..||||.|.+.||++...
T Consensus       813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            3555678999998875 576 559999999999997654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.86  E-value=2.4  Score=43.36  Aligned_cols=112  Identities=8%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             cCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecC
Q 048199          374 HSANIVSSIEFDRD----DQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       374 ~h~~~V~~l~~~p~----~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~  446 (495)
                      |.-..|.++.|.|-    ..-|+..-..+.|.||.+.....+ -+-.......+...-+  .-++.|||. ..+|+.-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEec
Confidence            45566999999984    224556667899999998743100 0000111122221112  347889999 777776555


Q ss_pred             CCcEEEEeCCC--CcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          447 EGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       447 dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ...--+++++.  .+....+. -.+.|.+.+|.+ ||..|+.+-
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~-DG~RLVVAv  174 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK-DGQRLVVAV  174 (671)
T ss_pred             CceeEeeeeeeCCceEEEecc-CCceEEEEEecC-cCCEEEEEe
Confidence            44445666653  23334443 467899999999 998877664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.83  E-value=2.2  Score=47.18  Aligned_cols=111  Identities=13%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc---ccCC----------C--CcCCCeeecC-----------------
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV---VNEP----------A--DVHCPVVEMP-----------------  423 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~---~~~~----------~--~~~~~~~~~~-----------------  423 (495)
                      ...|.+++|+||++.++-...+.++-+-+..-.   .+.+          .  +.....+.+.                 
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            567999999999999998888888877664221   0000          0  0000001110                 


Q ss_pred             -----CCCCeEEEEEcCCCCCEEEE-----ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          424 -----TRSKLSCLSWNKFSKNRIAS-----SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       424 -----~~~~i~~~~~~p~~~~~l~s-----g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                           -.+.=.+|.|-.| |.++++     ......|+|||.. |..-.+-....+-=.+++|.| .|..+++-..
T Consensus       189 ~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~  261 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGD-GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQC  261 (1265)
T ss_pred             ccchhhccCCceEEEccC-CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeee
Confidence                 0112245999999 888887     3333789999976 433222222233345789999 8888887653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.79  E-value=1.4  Score=44.44  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             CCcEEEEEEccCCCEEEEEe---CC-CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE-
Q 048199          376 ANIVSSIEFDRDDQLFATAG---VS-RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV-  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v-  450 (495)
                      ...+..-.|+|++..++..+   .. ..+.++|+.++.       .+. .....+.-..-+|+||+..++++...||.. 
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------~~~-i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-------RPV-ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-------cce-eeccCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            45566778999888655432   22 358888998872       111 111223334568999976777888888875 


Q ss_pred             -EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          451 -TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       451 -~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       .+.|+.++. +..+..-.+.-..=.|+| ||+.|+-.|+
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sd  301 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSP-DGSKIVFTSD  301 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCC-CCCEEEEEeC
Confidence             455666555 333443333333567899 9998877765

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=90.78  E-value=1.3  Score=36.95  Aligned_cols=67  Identities=10%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             CCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhhhccCCCchhhhhhhhhhccCCcHHHHHHHHHH
Q 048199           71 GHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSL  150 (495)
Q Consensus        71 GH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (495)
                      -+.||..|=.+.+.   .||.|..++.-..-.+.+..            -......+.||+.+.....+....+....+.
T Consensus        27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v~gv~~------------~g~~~~~PsYC~~CGkpyPWt~~~L~aa~el   91 (158)
T PF10083_consen   27 REKFCSKCGAKTIT---SCPNCSTPIRGDYHVEGVFG------------LGGHYEAPSYCHNCGKPYPWTENALEAANEL   91 (158)
T ss_pred             HHHHHHHhhHHHHH---HCcCCCCCCCCceecCCeee------------eCCCCCCChhHHhCCCCCchHHHHHHHHHHH
Confidence            35699999998876   59999998865322221110            0123447889999999877766666555444


Q ss_pred             HH
Q 048199          151 LS  152 (495)
Q Consensus       151 l~  152 (495)
                      +.
T Consensus        92 ~e   93 (158)
T PF10083_consen   92 IE   93 (158)
T ss_pred             HH
Confidence            44

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.65  E-value=1.2  Score=44.77  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeecc-----------ccc---cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-----------DIF---HSANIVSSIEFDRDDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-----------~~~---~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd  404 (495)
                      ..++.+.+| .+..|+..++.-...-+.+..+           .++   .-+-.|..+..++.|..++-+|.+|.+-++=
T Consensus        53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen   53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            335566666 7889997654322222221111           010   1234678888999999999999888665543


Q ss_pred             ccc-c-ccCCCCcCCCe-----------eecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcce
Q 048199          405 FAS-V-VNEPADVHCPV-----------VEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSV  461 (495)
Q Consensus       405 ~~~-~-~~~~~~~~~~~-----------~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~  461 (495)
                      -+. | ...+.+.+..+           +.....-.+..++|||++  ...|..-+.|.+|+|||....+.+
T Consensus       132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             hhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            221 1 01111111111           111122246788999995  577888888999999998765444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.64  E-value=2.8  Score=38.38  Aligned_cols=83  Identities=8%  Similarity=-0.080  Sum_probs=53.4

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe-EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL-SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~  465 (495)
                      -|++++.|...+.+.+.++.++        ...-.+...+.| ......++ +..|+.|+.|+.....|.++..++...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tG--------s~~w~f~~~~~vk~~a~~d~~-~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTG--------SQIWNFVILETVKVRAQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecch--------hheeeeeehhhhccceEEcCC-CceEEEecCCCcEEEecccccceEEecc
Confidence            4778899999999999999987        111111111111 12223555 7899999999999999999888877655


Q ss_pred             cccCcEEEEEeec
Q 048199          466 EHEKRAWSVDFSR  478 (495)
Q Consensus       466 ~h~~~v~~v~~~~  478 (495)
                      --.+.-.+-+..|
T Consensus       133 cgG~~f~sP~i~~  145 (354)
T KOG4649|consen  133 CGGGTFVSPVIAP  145 (354)
T ss_pred             cCCceeccceecC
Confidence            3322222334444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.57  E-value=0.91  Score=29.05  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             CcEEEEEEccC-C--CEEEEEeCCCcEEEEEcccc
Q 048199          377 NIVSSIEFDRD-D--QLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       377 ~~V~~l~~~p~-~--~~l~s~s~d~~i~vwd~~~~  408 (495)
                      +.|+++.|+|. +  .+|+-+-.-+.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46899999984 3  58888888899999999964

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.36  E-value=6.4  Score=37.67  Aligned_cols=105  Identities=8%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .+.+.++..+++|.+++.++.-.-..-||--..       .-..........|.++.|.|+ +.+.+.+ ..|.|++=|.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-------~w~~~~r~~~~riq~~gf~~~-~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-------TWQPHNRNSSRRIQSMGFSPD-GNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-------S-EEEE--SSS-EEEEEE-TT-S-EEEEE-TTTEEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCc-------cceEEccCccceehhceecCC-CCEEEEe-CCcEEEEccC
Confidence            567888888999999988876666667775432       122233344567999999999 7666655 7788888772


Q ss_pred             -CCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          456 -TTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       456 -~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                       .....    +..+....-.+..++|.+ +....++|+..
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G  253 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG  253 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT
T ss_pred             CCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc
Confidence             21211    111222233478899998 76677766543

>PRK02888 nitrous-oxide reductase; Validated

Probab=90.28  E-value=2.4  Score=44.25  Aligned_cols=79  Identities=11%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             cEEEEEEccCCCEEEE-EeCCCcEEEEEccccccCCC----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          378 IVSSIEFDRDDQLFAT-AGVSRRIKVFDFASVVNEPA----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s-~s~d~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ....+.++|||++++. +..+.+|.|.|+......+.    .....+....-.-.....+|.++ |+.+.|--.|..|-.
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~k  400 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVK  400 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEE
Confidence            4568999999997665 45699999999988632111    11112222222334567889998 788888889999999


Q ss_pred             EeCCC
Q 048199          453 WDVTT  457 (495)
Q Consensus       453 wd~~~  457 (495)
                      ||+.+
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.21  E-value=5.4  Score=37.89  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCc-------EEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRR-------IKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~-------i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      |.-.|+-++++++|..++..-..+-       |-+++-......   ...+.. .....+.+-+|++++++..+.+|+-.
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~---~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL---LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee---ccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence            6678899999988877765543332       222222221000   001100 11233568899999993334466667


Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      .+.+.+||..++..+....-  ..+..|+-.+ ++ +++|.+.-.
T Consensus       238 Gg~~~~~d~~tg~~~~~~~l--~D~cGva~~~-~~-f~~ssG~G~  278 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSVPL--PDACGVAPTD-DG-FLVSSGQGQ  278 (305)
T ss_pred             CCEEEEEECCCCCEeecccc--CceeeeeecC-Cc-eEEeCCCcc
Confidence            78999999999998776652  3466777665 54 666655443

>PRK02888 nitrous-oxide reductase; Validated

Probab=90.06  E-value=3.4  Score=43.14  Aligned_cols=72  Identities=19%  Similarity=0.080  Sum_probs=44.7

Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc------------eeecccccCcEEEEEeecCCCCeEEE
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS------------VMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~------------~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      +..+.-....+.+.++||+..+++++..+.+|.|.|+.+...            +....- ...-...+|.+ +|+...|
T Consensus       314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~ayts  391 (635)
T PRK02888        314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTT  391 (635)
T ss_pred             EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEe
Confidence            334445566789999999444556667799999999987542            222221 12234567877 7765555


Q ss_pred             eeCCCc
Q 048199          487 GSDDCK  492 (495)
Q Consensus       487 ~s~D~~  492 (495)
                      ---|..
T Consensus       392 lf~dsq  397 (635)
T PRK02888        392 LFLDSQ  397 (635)
T ss_pred             Eeecce
Confidence            544544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.55  E-value=1.5  Score=44.32  Aligned_cols=102  Identities=15%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             cEEEEEEccCCCEEE-EEeCCCcEEEE--EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE-
Q 048199          378 IVSSIEFDRDDQLFA-TAGVSRRIKVF--DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW-  453 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~-s~s~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw-  453 (495)
                      .-..-.|+|||+.|+ +...|+...||  |+...        .........+.-..=.|+||+..++++.+..|.-.|| 
T Consensus       239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~--------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~  310 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK--------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL  310 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC--------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence            334567999999666 55567776555  44443        1111111122223557999955556666677764544 


Q ss_pred             -eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          454 -DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       454 -d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       |...+. +..+....+.-..-.|+| ||.+|+..+.
T Consensus       311 ~~~~g~~-~~riT~~~~~~~~p~~Sp-dG~~i~~~~~  345 (425)
T COG0823         311 YDLEGSQ-VTRLTFSGGGNSNPVWSP-DGDKIVFESS  345 (425)
T ss_pred             ECCCCCc-eeEeeccCCCCcCccCCC-CCCEEEEEec
Confidence             554333 333333332223667899 9998887774

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.16  E-value=2.7  Score=41.78  Aligned_cols=92  Identities=16%  Similarity=0.110  Sum_probs=55.7

Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      +..++.++.++.+..||..++...        -.... ........  + +..++.++.||.|..+|..+|+.+-.+...
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~--------W~~~~-~~~~~p~~--~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~  308 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVL--------WKRDA-SSYQGPAV--D-DNRLYVTDADGVVVALDRRSGSELWKNDEL  308 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEE--------Eeecc-CCccCceE--e-CCEEEEECCCCeEEEEECCCCcEEEccccc
Confidence            456777888999999999887211        11111 11112222  2 567888889999999999999876555321


Q ss_pred             cCc-EEEEEeecCCCCeEEEeeCCCcEe
Q 048199          468 EKR-AWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       468 ~~~-v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ... ..+...   .+..|+.++.||.|+
T Consensus       309 ~~~~~ssp~i---~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       309 KYRQLTAPAV---VGGYLVVGDFEGYLH  333 (377)
T ss_pred             cCCccccCEE---ECCEEEEEeCCCEEE
Confidence            111 122222   345777788887765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.09  E-value=4.2  Score=42.83  Aligned_cols=102  Identities=11%  Similarity=0.116  Sum_probs=63.1

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE--cCCCCCEEEEecCCCcEEEEeCC
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW--NKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ..-+.-+..++..+..+...++.|||...+.-      .....+...+.|..++|  .|+ ++.+++-+....|.+|--.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------E~~~~f~~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------EYEESFSEDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEE------EEeeeecCCCceeeceeeecCC-CCEEEEEEcCcEEEEEEcc
Confidence            33444444555555555567899999988621      11122245678999999  466 6777777788899888531


Q ss_pred             -----C-C---cceee--ccccc-CcEEEEEeecCCCCeEEEee
Q 048199          457 -----T-Q---QSVME--YEEHE-KRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       457 -----~-~---~~~~~--~~~h~-~~v~~v~~~~~~g~~l~s~s  488 (495)
                           . +   ..+..  +..|+ .+|.+..|.+ +|.+++.++
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG  147 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG  147 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC
Confidence                 1 1   12222  23444 6799999998 886655443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.48  E-value=2.4  Score=42.64  Aligned_cols=92  Identities=11%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             EEeCCCcEEEEEcccccc-CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce-eecccccCc
Q 048199          393 TAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV-MEYEEHEKR  470 (495)
Q Consensus       393 s~s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~-~~~~~h~~~  470 (495)
                      .|-.|..|.-||.+-.-. .+.  ...-..+.......|.+-..  ..+|+.|+.+|.|++||- .+... ..|.+-..+
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~--~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~  473 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLA--VVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA  473 (644)
T ss_pred             EeecCCceEEecccccCcceee--eeeccccccccccceeeecC--CceEEEeecCCcEEeehh-hhhhhhhcccccCCc
Confidence            455688899999885411 000  00001112223344555444  348999999999999996 55443 446677889


Q ss_pred             EEEEEeecCCCCeEEEeeCC
Q 048199          471 AWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       471 v~~v~~~~~~g~~l~s~s~D  490 (495)
                      |..|..+. +|.+|+..+..
T Consensus       474 I~hVdvta-dGKwil~Tc~t  492 (644)
T KOG2395|consen  474 IKHVDVTA-DGKWILATCKT  492 (644)
T ss_pred             eeeEEeec-cCcEEEEeccc
Confidence            99999998 99988777654

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=88.29  E-value=6.3  Score=36.28  Aligned_cols=20  Identities=5%  Similarity=0.129  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 048199          193 HYIKEDINAVERHRIDLYRA  212 (495)
Q Consensus       193 ~~l~~~i~~l~~~~~~l~~~  212 (495)
                      ++.+.+|++|++-++.++..
T Consensus       120 KEARkEIkQLkQvieTmrss  139 (305)
T PF15290_consen  120 KEARKEIKQLKQVIETMRSS  139 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444444433

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.25  E-value=0.44  Score=33.63  Aligned_cols=39  Identities=28%  Similarity=0.581  Sum_probs=28.5

Q ss_pred             ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHH
Q 048199           67 LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL  107 (495)
Q Consensus        67 ~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l  107 (495)
                      +..=-|+||..|.+..+  ...||.|+-.+..+.++|.-.+
T Consensus        24 ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RPaa~L   62 (84)
T COG3813          24 ICTFECTFCADCAENRL--HGLCPNCGGELVARPIRPAAKL   62 (84)
T ss_pred             EEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCChHHHH
Confidence            33346799999999765  3689999998877666664433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=87.98  E-value=6.1  Score=39.40  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             EEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcEEEEe
Q 048199          379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIVTVWD  454 (495)
Q Consensus       379 V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v~iwd  454 (495)
                      -..+++++.+. .+++...+..|.+.|..+.        .......-......++|+|+ +..++.+..   ++++.+.|
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--------~~~~~~~vG~~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--------TVLGSIPVGLGPVGLAVDPD-GKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccc--------ceeeEeeeccCCceEEECCC-CCEEEEEecccCCceEEEEe
Confidence            34677888777 5556666799999996664        22222222225678999999 545544444   68999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCcEe
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~  494 (495)
                      ..++........-..+ ..+++.| +|..++.+. .++.|.
T Consensus       147 ~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~  185 (381)
T COG3391         147 AATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVS  185 (381)
T ss_pred             CCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEE
Confidence            9888877774433334 8899999 888555444 555553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.96  E-value=7.9  Score=35.04  Aligned_cols=107  Identities=13%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             EEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeeecCC----CC-CeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          379 VSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT----RS-KLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       379 V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----~~-~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      -..++|+-+.+. .+.-+.+-+|.-||.+-....+.. ...+..+..    .. -.-.+++..+ |+++++.-..|+|..
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~e-G~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTE-GNLYVATFNGGTVQK  237 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccC-CcEEEEEecCcEEEE
Confidence            356788876554 446778888988985432111100 001111110    00 1123344555 778887777889999


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      +|..+|+.+..+.-.+..|++++|--.+-..|++.
T Consensus       238 ~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             ECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            99999999999987889999999974243455444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.54  E-value=1.4  Score=43.42  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             CCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-eccc-------c
Q 048199          397 SRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-EYEE-------H  467 (495)
Q Consensus       397 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~~~~-------h  467 (495)
                      .+.+.|||+.++        . ...+. ....+....|+|+ +..++-.. ++.|.+++..++...+ +..|       -
T Consensus        22 ~~~y~i~d~~~~--------~-~~~l~~~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~   90 (353)
T PF00930_consen   22 KGDYYIYDIETG--------E-ITPLTPPPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGV   90 (353)
T ss_dssp             EEEEEEEETTTT--------E-EEESS-EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB
T ss_pred             ceeEEEEecCCC--------c-eEECcCCccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCc
Confidence            456888999886        1 11111 1456788999999 88777775 5789999987664321 1112       0


Q ss_pred             ---------cCcEEEEEeecCCCCeEEEeeCC
Q 048199          468 ---------EKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       468 ---------~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                               -+.-..+-|+| |+.+|+....|
T Consensus        91 ~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d  121 (353)
T PF00930_consen   91 PDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFD  121 (353)
T ss_dssp             --HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE
T ss_pred             cceeccccccccccceEECC-CCCEEEEEEEC
Confidence                     11235677999 99999877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE

Probab=87.19  E-value=0.29  Score=46.45  Aligned_cols=44  Identities=20%  Similarity=0.482  Sum_probs=34.3

Q ss_pred             ccccccccchhhhccccC----CC--CccchhhHHhhhcCCCCCCCCCCc
Q 048199           52 DMLCPICMQIIKEAFLTA----CG--HSFCYMCIITHLRNKSDCPCCGHY   95 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~----CG--H~FC~~Ci~~~~~~~~~CP~Cr~~   95 (495)
                      .-.||||+....--++..    =|  |.+|..|-..|--....||.|+..
T Consensus       184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~  233 (305)
T TIGR01562       184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES  233 (305)
T ss_pred             CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence            448999999986654432    33  677999999998777899999974

The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=86.96  E-value=5.2  Score=40.06  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=58.4

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      .+..++.++.++.+..+|..++.....   ...  .. .....+....   +..|+.++.||.|.++|..+|+.+..+.-
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~---~~~--~~-~~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWS---QSD--LL-HRLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEc---ccc--cC-CCcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            355666777889999999887621110   000  00 0111122222   45788899999999999999998877654


Q ss_pred             ccCcEEE-EEeecCCCCeEEEeeCCCcEe
Q 048199          467 HEKRAWS-VDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       467 h~~~v~~-v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ....+.+ ..+.  + ..|+.++.||.|.
T Consensus       364 ~~~~~~s~P~~~--~-~~l~v~t~~G~l~  389 (394)
T PRK11138        364 DSSGFLSEPVVA--D-DKLLIQARDGTVY  389 (394)
T ss_pred             CCCcceeCCEEE--C-CEEEEEeCCceEE
Confidence            3333332 2222  3 4788889999875

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=86.75  E-value=0.32  Score=44.00  Aligned_cols=42  Identities=26%  Similarity=0.478  Sum_probs=35.8

Q ss_pred             ccccccccchhhhccc-cCCCCccchhhHHhhhcCC--CCCCCCC
Q 048199           52 DMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK--SDCPCCG   93 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~--~~CP~Cr   93 (495)
                      .+.|||-+..+.+|++ ..|||+|-+.=|..++...  -.||+=+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g  220 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG  220 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence            5789999999999984 5899999999999998774  4799743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=86.73  E-value=17  Score=33.65  Aligned_cols=106  Identities=9%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             cCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      +-...+++|+|+|+ +.+++.....+.|..++....       ......+...+..-.|++..+ +.++++.-.++.+.+
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYI   90 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEE
Confidence            44556999999996 457777777888877776532       111122334456788888766 666666666889999


Q ss_pred             EeCCCCc------ceeecc-----cccCcEEEEEeecCCCCeEEEee
Q 048199          453 WDVTTQQ------SVMEYE-----EHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       453 wd~~~~~------~~~~~~-----~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      +++....      .+..+.     .+...+-+++|.+ .+..|+.+-
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~k  136 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAK  136 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEE
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEe
Confidence            9884321      111121     2455688999999 555555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=86.54  E-value=3.2  Score=44.95  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=64.7

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      +....|.+++.+..||..- .....++. . +..........+++-..+| +||.|+.+|.||+||--..       ...
T Consensus       543 e~tflGls~n~lfriDpR~-~~~k~v~~-~-~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~-------~AK  611 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRL-SGNKLVDS-Q-SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK-------RAK  611 (794)
T ss_pred             CceEEEECCCceEEeccCC-CCCceeec-c-ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccch-------hhh
Confidence            3445688888999999742 22222221 1 1111234456666554444 7789999999999994321       122


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...-+-..+|..|+.+.| |.+|+..+ +..+.++|.
T Consensus       612 T~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  612 TALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDT  646 (794)
T ss_pred             hcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEE
Confidence            222245679999999999 77766555 467778875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=86.36  E-value=0.94  Score=49.20  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             ccCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      +.+..++..=||=..+..|||.+| -|++-|+.=|.+++-...+-|.||.+++.+.+.+|-.+...++.+..
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~  935 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK  935 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence            345666777788888999999998 99999999999999999999999999999999999988887776644

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=86.21  E-value=0.26  Score=26.93  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=12.1

Q ss_pred             cchhhHHhhhcCCCCCCCCCCc
Q 048199           74 FCYMCIITHLRNKSDCPCCGHY   95 (495)
Q Consensus        74 FC~~Ci~~~~~~~~~CP~Cr~~   95 (495)
                      ||..|=.+.-.....||.|+.+
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCCc
Confidence            4445544544445567777655

>PRK02224 chromosome segregation protein; Provisional

Probab=86.14  E-value=16  Score=40.97  Aligned_cols=16  Identities=25%  Similarity=0.702  Sum_probs=12.8

Q ss_pred             CCCCCCCCCcCccCCC
Q 048199           86 KSDCPCCGHYLTNNQL  101 (495)
Q Consensus        86 ~~~CP~Cr~~~~~~~l  101 (495)
                      ...||+|++++...+.
T Consensus       451 ~~~Cp~C~r~~~~~~~  466 (880)
T PRK02224        451 AGKCPECGQPVEGSPH  466 (880)
T ss_pred             cccCCCCCCcCCCcch
Confidence            4689999999876554

>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []

Probab=86.13  E-value=0.22  Score=47.51  Aligned_cols=44  Identities=23%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             ccccccccchhhhccccCC-----CCccchhhHHhhhcCCCCCCCCCCc
Q 048199           52 DMLCPICMQIIKEAFLTAC-----GHSFCYMCIITHLRNKSDCPCCGHY   95 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~C-----GH~FC~~Ci~~~~~~~~~CP~Cr~~   95 (495)
                      .-.||||+..+.--++..=     -|.+|..|-..|--....||.|+..
T Consensus       172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~  220 (290)
T PF04216_consen  172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT  220 (290)
T ss_dssp             -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred             CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence            4589999999876655433     3778999999998777899999875

The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.06  E-value=23  Score=32.36  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199          166 NMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHR  206 (495)
Q Consensus       166 ~~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~  206 (495)
                      ++...++.|..++....++|+++.+.+..|+..|.+.+...
T Consensus        36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er   76 (230)
T PF10146_consen   36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER   76 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445444444444444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.04  E-value=4.3  Score=36.94  Aligned_cols=72  Identities=8%  Similarity=0.086  Sum_probs=49.7

Q ss_pred             EccCCCEEEEEeCCCcEEEEEccccccCCCC-cCCCeeec------CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          384 FDRDDQLFATAGVSRRIKVFDFASVVNEPAD-VHCPVVEM------PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~------~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      +...+++|+.-..+|.+++||+.+....+.. ...++...      .....|..+.++.+ |..|++-+ +|....||..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-GVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-CCEEEEEe-CCCEEEeccc
Confidence            3447888999999999999999987433322 11122211      34557889999977 77777665 6888999875


Q ss_pred             C
Q 048199          457 T  457 (495)
Q Consensus       457 ~  457 (495)
                      -
T Consensus        96 L   96 (219)
T PF07569_consen   96 L   96 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=85.91  E-value=0.65  Score=51.78  Aligned_cols=46  Identities=28%  Similarity=0.630  Sum_probs=33.1

Q ss_pred             ccccccccchhh--hcc-ccCCCCccchhhHHhhhcCC----------CCCCCCCCcCc
Q 048199           52 DMLCPICMQIIK--EAF-LTACGHSFCYMCIITHLRNK----------SDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~--~Pv-~l~CGH~FC~~Ci~~~~~~~----------~~CP~Cr~~~~   97 (495)
                      +-.|-||+..--  .|. .|.|||.|...|..+.+++.          ..||.|..++.
T Consensus      3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            346888875432  354 67999999999987666543          28999988763

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=85.79  E-value=0.44  Score=31.39  Aligned_cols=38  Identities=24%  Similarity=0.691  Sum_probs=24.4

Q ss_pred             cccccchhhh--ccccCCCC-----ccchhhHHhhhcCC--CCCCCC
Q 048199           55 CPICMQIIKE--AFLTACGH-----SFCYMCIITHLRNK--SDCPCC   92 (495)
Q Consensus        55 C~IC~~~~~~--Pv~l~CGH-----~FC~~Ci~~~~~~~--~~CP~C   92 (495)
                      |-||++.-.+  |.+.||+=     ...+.|+.+|+...  .+|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            6788888764  45667632     34688999999853  579887

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.49  E-value=3.8  Score=41.62  Aligned_cols=87  Identities=10%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---------
Q 048199          388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---------  458 (495)
Q Consensus       388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---------  458 (495)
                      |.+|+..+.+ .|.+||+.++        ..+..+... +|..+.|+++ +.+++-.+. .++.|++....         
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~--------~~i~~i~v~-~vk~V~Ws~~-g~~val~t~-~~i~il~~~~~~~~~~~~~g  184 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETG--------KLIRRIDVS-AVKYVIWSDD-GELVALVTK-DSIYILKYNLEAVAAIPEEG  184 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT----------EEEEESS--E-EEEEE-TT-SSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred             CcEEEEECCC-CEEEEEhhHc--------ceeeEEecC-CCcEEEEECC-CCEEEEEeC-CeEEEEEecchhcccccccC
Confidence            8877777654 8999999986        445555443 3889999999 888888774 47778775422         


Q ss_pred             --cceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          459 --QSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       459 --~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                        ..+..+..-...|.+.+|.. + -++.|..
T Consensus       185 ~e~~f~~~~E~~~~IkSg~W~~-d-~fiYtT~  214 (443)
T PF04053_consen  185 VEDAFELIHEISERIKSGCWVE-D-CFIYTTS  214 (443)
T ss_dssp             -GGGEEEEEEE-S--SEEEEET-T-EEEEE-T
T ss_pred             chhceEEEEEecceeEEEEEEc-C-EEEEEcC
Confidence              13444444356788888876 4 4555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=85.47  E-value=0.47  Score=52.14  Aligned_cols=45  Identities=24%  Similarity=0.645  Sum_probs=34.1

Q ss_pred             cccccccchhh-----hccc-c-CCCCccchhhHHhh-hcCCCCCCCCCCcCc
Q 048199           53 MLCPICMQIIK-----EAFL-T-ACGHSFCYMCIITH-LRNKSDCPCCGHYLT   97 (495)
Q Consensus        53 l~C~IC~~~~~-----~Pv~-l-~CGH~FC~~Ci~~~-~~~~~~CP~Cr~~~~   97 (495)
                      -.|.||++..-     +|.+ . .||---|+.|.+-= -+.++.||+|+.++.
T Consensus        18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            37999999874     4542 2 69999999999632 234579999998876

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=85.06  E-value=0.52  Score=32.12  Aligned_cols=37  Identities=27%  Similarity=0.581  Sum_probs=25.1

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcC--CCCCCCCCCc
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN--KSDCPCCGHY   95 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~   95 (495)
                      .+.||.|.+.|...       .++.-|...+...  ...||+|...
T Consensus         2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~   40 (54)
T PF05605_consen    2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR   40 (54)
T ss_pred             CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence            57899999966643       2455566665543  2579999864

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.99  E-value=0.75  Score=49.02  Aligned_cols=117  Identities=15%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCC--CCCEEEEecCCCc
Q 048199          374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKF--SKNRIASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~--~~~~l~sg~~dg~  449 (495)
                      |-.+.|-+|.|-. +...+.  -.-|...|||++--...+... -.+... .....+.-+.|-|.  +..++-.+..++.
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~-l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ-LEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc-eEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            4467788888843 333333  334678899987531111100 001111 12222334444433  2567888888999


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEE-----------eecCCCCeEEEeeCCCcEeC
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVD-----------FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~-----------~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++.++.+.. ...|.+|..++..++           .+| ||+.++.++.||.|+.
T Consensus       207 i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  207 IRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGF  261 (1283)
T ss_pred             eeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccce
Confidence            8887776433 256677877776654           478 9999999999998863

>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein

Probab=84.89  E-value=6.8  Score=27.97  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=26.2

Q ss_pred             CchhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 048199          124 SPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQ  160 (495)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  160 (495)
                      ..++.+...+|.+|+..+.+...+.+.+...+++|..
T Consensus         4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~   40 (70)
T PF08606_consen    4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH   40 (70)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677888888887777777777777666653

The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.78  E-value=20  Score=36.42  Aligned_cols=60  Identities=15%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF  436 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~  436 (495)
                      -..-++|+|.|++++|++--..|.|++++....... .... ..+........+..++|+|+
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-CceeccCCCCceeeEEECCC
Confidence            455789999999998888765799999986554111 1111 01111123677899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.67  E-value=12  Score=40.57  Aligned_cols=80  Identities=15%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccc--ccc-CCCCcCCCee-----------ecCCCCCeEEEEEcCCC--CCE
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVN-EPADVHCPVV-----------EMPTRSKLSCLSWNKFS--KNR  440 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~--~~~-~~~~~~~~~~-----------~~~~~~~i~~~~~~p~~--~~~  440 (495)
                      -.|..|.++|+|.+++..|.. .|.|-.+..  +.. .+.+....+.           .......|..+.|||.+  +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            368899999999999988864 456655542  111 1111111111           11234468999999983  578


Q ss_pred             EEEecCCCcEEEEeCCC
Q 048199          441 IASSDYEGIVTVWDVTT  457 (495)
Q Consensus       441 l~sg~~dg~v~iwd~~~  457 (495)
                      |+.-..|+++++||+..
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            88999999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.31  E-value=0.43  Score=48.59  Aligned_cols=37  Identities=32%  Similarity=0.676  Sum_probs=31.3

Q ss_pred             CCccccccccchhhh-ccccCCCCccchhhHHhhhcCC
Q 048199           50 DKDMLCPICMQIIKE-AFLTACGHSFCYMCIITHLRNK   86 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~   86 (495)
                      .....|.||.+.+.. ...+.|||.||..|+..|+...
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k  105 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK  105 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence            345789999999986 5677999999999999998763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=84.23  E-value=0.95  Score=40.53  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~  408 (495)
                      ..++-|..+..+.+|....|+...   .+...   +-......|.--.++.+..+++.|+.||.|++...
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s---~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS---GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             ceEEeecccceEEEecCCccchHH---Hhhhc---ccccceeccccccccceeEEeccCCceeeeccccC
Confidence            345567777777777764332211   11100   11122222222335668889999999999999876

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=83.82  E-value=18  Score=33.64  Aligned_cols=99  Identities=18%  Similarity=0.053  Sum_probs=60.4

Q ss_pred             cEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          378 IVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      .+.+.++++++..++...   ....+.++.....          .........+..-.|+++ +..++....+...+++-
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----------~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----------VRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----------ceeeccCCccccccccCC-CCEEEEEcCCCceEEEE
Confidence            688999999999776554   3344444444332          111112236777899999 77777777677777773


Q ss_pred             -CCCCccee-ec--ccccCcEEEEEeecCCCCeEEEee
Q 048199          455 -VTTQQSVM-EY--EEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       455 -~~~~~~~~-~~--~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                       ...+.... ..  .+-...|..+.++| ||..++--.
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~  130 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVV  130 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEE
Confidence             33332211 11  11122899999999 998776555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=83.75  E-value=0.52  Score=49.19  Aligned_cols=47  Identities=11%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             Cccccccccchhhhcc----ccC---CCCccchhhHHhhhcCC------CCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKEAF----LTA---CGHSFCYMCIITHLRNK------SDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv----~l~---CGH~FC~~Ci~~~~~~~------~~CP~Cr~~~~   97 (495)
                      +..+|.||.-.+.+|+    +++   |+|.||..||..|...-      -.|++|..-+.
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            3467888888888864    455   99999999999997642      25888876543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.72  E-value=7.1  Score=41.62  Aligned_cols=115  Identities=13%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             EEEEEEcc--CCCEEEEEeCCCcEEEEEcccccc---CC---------CCcCCCeeecCCCCCeEEEEEc--CCCCCEEE
Q 048199          379 VSSIEFDR--DDQLFATAGVSRRIKVFDFASVVN---EP---------ADVHCPVVEMPTRSKLSCLSWN--KFSKNRIA  442 (495)
Q Consensus       379 V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~---~~---------~~~~~~~~~~~~~~~i~~~~~~--p~~~~~l~  442 (495)
                      |.-|....  +...|+.|..||.|.+|.+..-..   ..         .....|...+.....+|+++++  .. ..+||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEE
Confidence            44444443  456888999999999998854310   00         0111233444455689999998  66 77888


Q ss_pred             EecCCCcEEEEeCCCC--c-ceeecccccCcEEEEEeecCC----CC-eEEEeeCCCcEe
Q 048199          443 SSDYEGIVTVWDVTTQ--Q-SVMEYEEHEKRAWSVDFSRTE----PS-MLVSGSDDCKVL  494 (495)
Q Consensus       443 sg~~dg~v~iwd~~~~--~-~~~~~~~h~~~v~~v~~~~~~----g~-~l~s~s~D~~v~  494 (495)
                      .++....|.||-....  + ....-..|...|.+|+|-+.+    |. +|++++-.|.|-
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~  241 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW  241 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence            8888888888865431  1 111111256679999998632    22 677777777653

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.30  E-value=34  Score=30.72  Aligned_cols=23  Identities=4%  Similarity=0.108  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 048199          188 IQTDLHYIKEDINAVERHRIDLY  210 (495)
Q Consensus       188 ~~~~~~~l~~~i~~l~~~~~~l~  210 (495)
                      ++.+.+.|.+++..++.++..++
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444443333

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=83.16  E-value=1.1  Score=30.15  Aligned_cols=26  Identities=38%  Similarity=0.781  Sum_probs=21.2

Q ss_pred             CccchhhHHhhhcCCCCCCCCCCcCccC
Q 048199           72 HSFCYMCIITHLRNKSDCPCCGHYLTNN   99 (495)
Q Consensus        72 H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~   99 (495)
                      -+||..|.+..+  ...||.|+-.+..+
T Consensus        29 CTFC~~C~e~~l--~~~CPNCgGelv~R   54 (57)
T PF06906_consen   29 CTFCADCAETML--NGVCPNCGGELVRR   54 (57)
T ss_pred             CcccHHHHHHHh--cCcCcCCCCccccC
Confidence            479999999987  46899999887653

This family contains a number of conserved cysteine residues and its function is unknown.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.11  E-value=7.3  Score=38.00  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEccccc-cCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecCC-------
Q 048199          379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVV-NEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDYE-------  447 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~d-------  447 (495)
                      -++|+|.|+|.+|++- ..|.|++++..... ..+...  +.........+..++|+|+   ++.++++.+..       
T Consensus         4 P~~~a~~pdG~l~v~e-~~G~i~~~~~~g~~~~~v~~~--~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAE-RSGRIWVVDKDGSLKTPVADL--PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEEEE-TTTEEEEEETTTEECEEEEE---TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEEEe-CCceEEEEeCCCcCcceeccc--ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            5799999999888765 49999999933321 000000  0112234557899999994   23333333311       


Q ss_pred             -CcEEEEeCCCC-------cce-eeccc---ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          448 -GIVTVWDVTTQ-------QSV-MEYEE---HEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       448 -g~v~iwd~~~~-------~~~-~~~~~---h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                       ..|.-|....+       +.+ ..+..   .......|.|.| ||.+.++.++.+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCC
Confidence             12333333222       111 11111   234566799999 997777766543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.07  E-value=0.16  Score=48.46  Aligned_cols=45  Identities=24%  Similarity=0.457  Sum_probs=39.4

Q ss_pred             ccccccchhhhc----cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           54 LCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      .|.||++-++.-    ..+.|||.+...||++|+....+||.|++.+..
T Consensus       198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            599999999865    367899999999999999988899999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
2jmd_A	63	Solution Structure Of The Ring Domain Of Human Traf		6e-08
2eci_A	86	Solution Structure Of The Ring Domain Of The Human		9e-08
3hct_A	118	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-07
3hcs_A	170	Crystal Structure Of The N-Terminal Domain Of Traf6		6e-06
2ckl_B	165	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		1e-05
1jm7_A	112	Solution Structure Of The Brca1/bard1 Ring-domain H		1e-05
2egp_A	79	Solution Structure Of The Ring-Finger Domain From H		2e-05
3rpg_C	121	Bmi1RING1B-Ubch5c Complex Structure Length = 121		4e-05
2ecw_A	85	Solution Structure Of The Zinc Finger, C3hc4 Type (		8e-05
2h0d_B	100	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		9e-05
3ng2_A	71	Crystal Structure Of The Rnf4 Ring Domain Dimer Len		1e-04
2ysj_A	63	Solution Structure Of The Ring Domain (1-56) From T		1e-04
2ysl_A	73	Solution Structure Of The Ring Domain (1-66) From T		2e-04
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		3e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		7e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		8e-04

>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6 Length = 63

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 55  CPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
           CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 9   CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59

>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf Receptor-Associated Factor 6 Protein Length = 86

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
           L+    CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 22  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 78

>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 118

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
           L+    CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6 Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 55  CPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
           CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 21  CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 165

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 44  VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQ- 100
           V    L  +++CPIC+ ++K    T  C H FC  CIIT LR+ + +CP C   L + + 
Sbjct: 46  VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105
Query: 101 LYPNFLLDKLLKK 113
           L P+   D L+ K
Sbjct: 106 LRPDPNFDALISK 118

>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
           ++ + K + CPIC+++IKE   T C H FC  C++  L  K   S CP C + +T   L 
Sbjct: 15  INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
            +     L+++LLK   A Q+
Sbjct: 75  ESTRFSQLVEELLKIICAFQL 95

>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human Tripartite Motif Protein 34 Length = 79

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCI-------ITHLRNKSDCPCCG-----HYL 96
           + +++ CPIC++++ E     CGHS C  CI       +T +  KS CP CG      +L
Sbjct: 9   VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68
Query: 97  TNNQLYPNFL 106
             NQ   N +
Sbjct: 69  QANQHLANIV 78

>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 44  VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQ- 100
           V    L  +++CPIC+ ++K    T  C H FC  CIIT LR+ + +CP C   L + + 
Sbjct: 45  VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 104
Query: 101 LYPNFLLDKLLKK 113
           L P+   D L+ K
Sbjct: 105 LRPDPNFDALISK 117

>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Tripartite Motif Protein 30 Length = 85

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL---RN---KSDCPCCGHYLTNNQLY 102
           + +++ CPIC++++KE     C HSFC  CI  +    RN   K +CP C        L 
Sbjct: 16  IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75
Query: 103 PNF 105
           PN 
Sbjct: 76  PNL 78

>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 100

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 44  VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQ- 100
           V    L  +++CPIC+ ++K    T  C H FC  CIIT LR+   +CP C   L + + 
Sbjct: 26  VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 85
Query: 101 LYPNFLLDKLLKK 113
           L P+   D L+ K
Sbjct: 86  LRPDPNFDALISK 98

>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer Length = 71

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 55  CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFL 106
           CPICM    +I++   L   T CGH FC  C+   L+N + CP C   + + + +P ++
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71

>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From Tripartite Motif-containing Protein 31 Length = 63

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS----DCPCC 92
          V++L ++++CPIC+ I+++     CGH+FC  C IT +   S     CP C
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKC-ITQIGETSCGFFKCPLC 63

>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From Tripartite Motif-containing Protein 31 Length = 73

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS----DCPCCGHYLTNNQL 101
           V++L ++++CPIC+ I+++     CGH+FC  C IT +   S     CP C   +  N +
Sbjct: 14  VNKLQEEVICPICLDILQKPVTIDCGHNFCLKC-ITQIGETSCGFFKCPLCKTSVRKNAI 72

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK 435
           ++ + ++ F R  ++     + + +K++DF    NEP+ +   +     R  L C+  + 
Sbjct: 191 SSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQI---LSLTGDRVPLHCVDRHP 246
Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
             ++ +A+   +G++++WDV  +Q  M     + HE   W V F  + P  L + S+D  
Sbjct: 247 NQQHVVATGGQDGMLSIWDV--RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGS 304
Query: 493 VLY 495
           + +
Sbjct: 305 LWH 307

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
          L+ ++ C IC +   EA    C HSFC  CI   ++ K +CP C
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 93

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49  LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           L+ ++ C IC +   EA    C HSFC  CI   ++ K +CP C
Sbjct: 61  LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-22
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-19
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-18
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-18
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-17
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-17
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-17
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-17
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-17
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-14
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-14
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-13
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-13
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-13
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-13
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	4e-13
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-11
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-09
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	6e-05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-12
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-12
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-12
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	4e-12
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	8e-11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	8e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-10
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-09
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-06
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	6e-11
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	9e-11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-10
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-10
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	3e-10
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-10
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-05
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	7e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	7e-10
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	9e-10
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-09
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-08
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-06
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	4e-09
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	4e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	6e-06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-09
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	9e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	8e-07
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-04
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	1e-08
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-08
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	8e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-08
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	4e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-07
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-08
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	7e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-08
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-07
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	8e-06
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	6e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	3e-08
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-07
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	7e-06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-08
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	8e-08
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	9e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	9e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-06
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-06
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-07
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	8e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-07
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-07
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	5e-06
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-04
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	2e-07
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-07
2pm7_B	297	Protein transport protein SEC13, protein transport	6e-06
2pm7_B	297	Protein transport protein SEC13, protein transport	3e-04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	9e-05
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	6e-04
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-07
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-05
3jro_A	753	Fusion protein of protein transport protein SEC13	6e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-07
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	6e-06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	8e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	7e-05
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-05
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	4e-07
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	4e-07
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	4e-06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-05
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	7e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	9e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-06
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-06
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	4e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-04
3jrp_A	379	Fusion protein of protein transport protein SEC13	6e-07
3jrp_A	379	Fusion protein of protein transport protein SEC13	6e-06
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-04
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	7e-06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-04
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	1e-06
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-06
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	8e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-06
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	8e-06
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	5e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-06
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	5e-06
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	8e-06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	5e-06
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	5e-06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	6e-06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	7e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	6e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	8e-06
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-05
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	5e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	1e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	5e-05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	5e-05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	5e-05
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	7e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	3e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-04
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	8e-04

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 89.4 bits (222), Expect = 6e-22
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 41  TSEVGVSELDKDMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99
                +  +D  + C IC +    A  +  C H++C +CI   L  K+ CP C   +T  
Sbjct: 11  PGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70

Query: 100 QLYPNFLLDKLLKK 113
            L  N +LD+L+K 
Sbjct: 71  DLKNNRILDELVKS 84

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYL 96
            +S S   +SEL   +LC IC   + +A  +T C H+FC  CI+ H    + CP C   +
Sbjct: 1   GSSGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

Query: 97  TNNQLYPN 104
              Q    
Sbjct: 61  HQTQPLSG 68

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 80.4 bits (198), Expect = 5e-18
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 8   PVVPAVKPDMKPSSTDTAPQETDAAAAYT--------AAASTSEVGVSELDKDMLCPICM 59
           P+   +   ++ + T    +  + +                   V    L  +++CPIC+
Sbjct: 2   PLGSHMSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICL 61

Query: 60  QIIKEAF-LTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQ-LYPNFLLD----KLLK 112
            ++K       C H FC  CIIT LR+   +CP C   L + + L P+   D    K+  
Sbjct: 62  DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121

Query: 113 KTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKR 156
                +  +        +   QQ    S++E    +  ++  +R
Sbjct: 122 SRDEYEAHQERVLARINKHNNQQALSHSIEE-GLKIQAMNRLQR 164

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 78.7 bits (194), Expect = 7e-18
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHYLTNNQLYPN 104
              L+    CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 105 FLLDKLLKKTSAR 117
               + +     +
Sbjct: 72  NFAKREILSLMVK 84

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 77.2 bits (190), Expect = 8e-18
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97
            +S S  G  E +    C IC Q  +   +T C H FC  C + H R    C  C    T
Sbjct: 1   GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQP-T 59

Query: 98  NNQLYPNFLLDKLLKKTSARQ 118
                P   L   L+K+    
Sbjct: 60  GGIFNPAKELMAKLQKSGPSS 80

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 40  STSEVGVSELDKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98
            T+ + ++EL+  ++C +C     +A  +  C HSFC  CI+ +L     CP C   +  
Sbjct: 3   RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62

Query: 99  NQLYPNFLLDKLL 111
            +   N   DK L
Sbjct: 63  TRPLLNIRSDKTL 75

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 47  SELDKDMLCPICMQIIKE-------AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99
                 + CPICM    E          T CGH FC  C+   L+N + CP C   + + 
Sbjct: 5   LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64

Query: 100 QLYPNFL 106
           + +P ++
Sbjct: 65  RYHPIYI 71

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 74.8 bits (184), Expect = 3e-17
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 52  DMLCPICMQIIKE-------AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104
            + CPICM    E          T CGH FC  C+   L+N + CP C   + + + +P 
Sbjct: 3   MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62

Query: 105 FL 106
           ++
Sbjct: 63  YI 64

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 74.8 bits (184), Expect = 3e-17
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHYL 96
            +S S   V  ++    C  C  ++     T CGH FC  C+   L + S  C  C   +
Sbjct: 1   GSSGSSGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

Query: 97  TNNQLY 102
             ++++
Sbjct: 61  VKDKVF 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 75.3 bits (185), Expect = 5e-17
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 46  VSELDKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYP 103
           V  + +   C ICM+ +++A     C    C+ CI   L   ++ CP C   L   +L  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75

Query: 104 NFLLDKLLKKTSARQISKTASPLEN 128
               +++ ++    Q+       EN
Sbjct: 76  CRWAEEVTQQLDTLQLCSLTKHEEN 100

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 15/67 (22%), Positives = 22/67 (32%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97
            +S S    +       C IC+Q         C H FCY+C+         C  C   + 
Sbjct: 1   GSSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60

Query: 98  NNQLYPN 104
            + L   
Sbjct: 61  EDFLDSG 67

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 48  ELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSD--CPCCGH-YLTNNQLYP 103
            +  ++LC IC  I+ +A +   CG+S+C  CI T L    +  CP C    ++ + L  
Sbjct: 9   PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68

Query: 104 NFLLDKLLKK 113
           N  L + +  
Sbjct: 69  NKFLRQAVNN 78

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 68.6 bits (167), Expect = 6e-14
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHYLTNNQLYPN 104
              L+    CPIC+  ++EA  T CGH FC  CII  +R+    CP     L  NQL+P+
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 105 FLLDKLLKKTSAR 117
               + +     +
Sbjct: 72  NFAKREILSLMVK 84

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 67.4 bits (164), Expect = 1e-13
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 47  SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT--NNQLYPN 104
             L+ ++ C IC +   EA    C HSFC  CI   ++ K +CP C   +      L  +
Sbjct: 59  DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLD 118

Query: 105 FLLDKLLKK 113
             ++K++  
Sbjct: 119 NCINKMVNN 127

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 38 AASTSEVGVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSD--CPCCGH 94
           +S S      +  ++LC IC  I+ +A +   CG+S+C  CI T L    +  CP C  
Sbjct: 1  GSSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 64.9 bits (158), Expect = 4e-13
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 17  MKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAF-LTACGHSFC 75
           M+P           A                 L+K + C  C  I++E   L  C H FC
Sbjct: 1   MEPDGRGAWAHSRAALD--------------RLEKLLRCSRCTNILREPVCLGGCEHIFC 46

Query: 76  YMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKK 113
             C+   +     CP C        L  N  LD +++ 
Sbjct: 47  SNCVSDCIGTG--CPVCYTPAWIQDLKINRQLDSMIQL 82

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 65.5 bits (159), Expect = 4e-13
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHYLTNNQLYPN 104
            ++L+   LC  C  +++  F   CGH +C  C+ + L +    C  C H     +    
Sbjct: 25  GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84

Query: 105 FLLDKLLKKTSARQI 119
                     +AR+ 
Sbjct: 85  LESSSAFPDNAARRE 99

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 65.0 bits (158), Expect = 5e-13
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 36  TAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGH 94
            A+ S  ++ +S++++   C  C +++     T C H+ C  C+    R +   CP C +
Sbjct: 36  PASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRY 95

Query: 95  YLTNN-QLYPNFLLDKLLKK 113
            L  +  +  N  L  +L +
Sbjct: 96  DLGRSYAMQVNQPLQTVLNQ 115

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 374 HSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS 432
           H+  +V  + +      LF +    +++ ++D                     ++++CLS
Sbjct: 230 HT-AVVEDVAWHLLHESLFGSVADDQKLMIWD----TRNNNTSKPSHTVDAHTAEVNCLS 284

Query: 433 WNKFSKNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
           +N +S+  +A+   +  V +WD+   +  +  +E H+   + V +S    ++L S   D 
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344

Query: 492 KV 493
           ++
Sbjct: 345 RL 346

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 379 VSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR---SKLSCLSWN 434
           V+   +   +  + AT   S  + VFD+    ++P        ++  R    +   LSWN
Sbjct: 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 190

Query: 435 KFSKNRIASSDYEGIVTVWDVTTQQ-------SVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
                 + S+  +  + +WD+           +   +  H      V +     S+  S 
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250

Query: 488 SDDCKV 493
           +DD K+
Sbjct: 251 ADDQKL 256

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 19/128 (14%), Positives = 51/128 (39%), Gaps = 23/128 (17%)

Query: 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT-RSKLSCLSWNKF 436
           V+ + F+   + + AT    + + ++D  ++          +    + + ++  + W+  
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNL-------KLKLHSFESHKDEIFQVQWSPH 332

Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEE--------------HEKRAWSVDFSRTEPS 482
           ++  +ASS  +  + VWD++        E+              H  +     ++  EP 
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392

Query: 483 MLVSGSDD 490
           ++ S S+D
Sbjct: 393 IICSVSED 400

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASV--VNEPADVHCPVVEMPT-----RSKLSC 430
           +  +++   ++ + A++G  RR+ V+D + +       D      E+        +K+S 
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE 468
            SWN      I S   + I+ VW +       E  E  
Sbjct: 384 FSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIP 421

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 39 ASTSEVGVSELDKDMLCPICMQIIKE-------AFLTACGHSFCYMCIITHLRNKSDCPC 91
          +S S          + CPICM    E          T CGH FC  C+   L+N + CP 
Sbjct: 2  SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 92 CGHYLTN 98
          C   + +
Sbjct: 62 CRKKINH 68

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 37  AAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCC--- 92
            + +  +  +  L  +  C ICM+I+ E     C H+ C  C  + +   S  CP C   
Sbjct: 1   GSMALPKDAIPSLS-ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59

Query: 93  ----GHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQG 136
                 Y T      N  L  +++K   R+    AS  E+   A    
Sbjct: 60  VSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQ 107

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQLYPN 104
            +   K + C IC  I+ +   T+C H FC +CI+  L+   S CP C +      L   
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76

Query: 105 F-----LLDKLLKKTSARQISKTASPLENFRQALQQGC 137
                 +L+ L+ K  A+  ++    LE +   +    
Sbjct: 77  VKSFLNILNSLMVKCPAQDCNEEV-SLEKYNHHVSSHK 113

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-------CP 90
            +S S      + +++ CPIC++++ E     CGHS C  CI    +           CP
Sbjct: 1   GSSGS---SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57

Query: 91  CCGHYLTNNQLYPNFLLDKL 110
            CG   +   L  N  L  +
Sbjct: 58  VCGISYSFEHLQANQHLANI 77

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 62.3 bits (151), Expect = 8e-12
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 37  AAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHY 95
           +        + +L++  +C  C +++ +   T C H+ C  C+    + +   CP C H 
Sbjct: 63  SHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHD 122

Query: 96  LT-NNQLYPNFLLDKLLKK 113
           L  N  + PN +L  LL  
Sbjct: 123 LGQNYIMIPNEILQTLLDL 141

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 45  GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD------CPCCGHYLTN 98
            +  + +++ CPIC++++KE     C HSFC  CI  +  +  +      CP C      
Sbjct: 12  VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71

Query: 99  NQLYPNFLLDKL 110
             L PN  +  +
Sbjct: 72  GNLKPNLHVANI 83

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H   I   +       + A       ++++   +     AD   P+  +   SK + L W
Sbjct: 22  HD-KIPLLVSGTVSGTVDANFSTDSSLELWSLLA-----ADSEKPIASLQVDSKFNDLDW 75

Query: 434 NKFSKNRIASSDYEGIVTVWDVTTQQSVME----YEEHEKRAWSVDFSRTEPSMLVSGSD 489
           +  +K  IA +   G + ++      + +     +  H     +V F+  + ++L SG +
Sbjct: 76  SHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN 134

Query: 490 DCKV 493
           + ++
Sbjct: 135 NGEI 138

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 362 RVIAELRHGDIF--HSANIVSSIEFDRDDQ-LFATAGVSRR---IKVFDFASVVNEPADV 415
           + +  L +           +S +E+   +    ATA  S     I ++D  +        
Sbjct: 199 KEVIHLSYTSPNSGIK-QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA------- 250

Query: 416 HCPVVEMP---TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW 472
           + P+  +     +  LS L W    ++ + SS  +  V +W+  + + + ++       +
Sbjct: 251 NTPLQTLNQGHQKGILS-LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCF 309

Query: 473 SVDFSRTEPSMLVSGSDDCKV 493
              F+   P +    S D K+
Sbjct: 310 KTKFAPEAPDLFACASFDNKI 330

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 21/129 (16%)

Query: 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFAS-------VVNEPADVHCPVVEMPTRSKLSC 430
           V S+ +++    +FA+AG S    ++D  +           P            + +LS 
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI--------KQQLSV 219

Query: 431 LSWNKFSKNRIAS---SDYEGIVTVWDVTTQQSVME--YEEHEKRAWSVDFSRTEPSMLV 485
           + W+  +  R+A+   SD +  + +WD+    + ++   + H+K   S+D+   +  +L+
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279

Query: 486 SGSDDCKVL 494
           S   D  VL
Sbjct: 280 SSGRDNTVL 288

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 24/130 (18%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC------PVVEMPTRSKLSCLS 432
            + +++  ++++ A A  +  ++++      N    +         V           + 
Sbjct: 70  FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV---------KTVK 120

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---------EEHEKRAWSVDFSRTEPSM 483
           +N    N +AS    G + +WD+                          S+ ++++   +
Sbjct: 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV 180

Query: 484 LVSGSDDCKV 493
             S       
Sbjct: 181 FASAGSSNFA 190

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 374 HSANIVSSIEF--DRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT-RSKLSC 430
           H +++V++++F   +  Q   +   S ++ V+ +       +       E       +S 
Sbjct: 62  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 121

Query: 431 LSWNKFSKNRI--ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488
           +SW+   + R+       +         +  S+ E   H +R  +    ++ P   ++  
Sbjct: 122 ISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180

Query: 489 DDCKV 493
           DD  V
Sbjct: 181 DDGSV 185

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
            S I     +   A   V  +I ++D  S  V                 SK++ +SW   
Sbjct: 491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR--------TSKINAISWKPA 542

Query: 437 SKN---------RIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEP-SMLV 485
            K           +A+   +  + ++ V     +++    H+    ++ +      S LV
Sbjct: 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE---TPSTLV 599

Query: 486 SGSDDCKV 493
           S   D  +
Sbjct: 600 SSGADACI 607

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 379 VSSIEFDRDDQLFATAGVSR--RIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWN 434
           +S I +D + +     G  R        + S   + E +  H       ++   +C    
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-H-------SQRINAC---- 166

Query: 435 KFS---KNRIASSDYEGIVTVWDVTTQQ---SVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488
                   R  +   +G V  +     +   S   + +       V+FS      +++  
Sbjct: 167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226

Query: 489 DDCKV 493
            D K+
Sbjct: 227 SDRKI 231

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 20/126 (15%)

Query: 374 HSANIVSSIEF---DRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKL 428
                V    F     D Q FAT G    I+V+D  +   V +          +  +   
Sbjct: 248 DQ-EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW--------TLDKQQLG 298

Query: 429 SCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
           +       + N RI S   +G +  +++   + +     H K   ++  +      L+SG
Sbjct: 299 NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISG 353

Query: 488 SDDCKV 493
           S D ++
Sbjct: 354 SYDGRI 359

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 8/123 (6%)

Query: 374 HSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS 432
           HS   +++    +       T G    +  +                      S +  + 
Sbjct: 159 HS-QRINACHLKQSRPMRSMTVGDDGSVVFYQ----GPPFKFSASDRTHHKQGSFVRDVE 213

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDD 490
           ++  S   + +   +  ++ +D  + + +   E+ ++      F+ +        +   D
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273

Query: 491 CKV 493
             +
Sbjct: 274 ATI 276

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 25/123 (20%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEMPTRSKLSC 430
                         +    +  +   +  ++     +E       H           ++ 
Sbjct: 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH--DEVLKTISGH--------NKGITA 344

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
           L+ N      + S  Y+G +  W  ++       ++H     S+D S  +     S S D
Sbjct: 345 LTVN-----PLISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNS--KAQEYSSISWD 392

Query: 491 CKV 493
             +
Sbjct: 393 DTL 395

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 20/121 (16%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           HS N++ S++     Q +++      +KV                       S+    S 
Sbjct: 371 HS-NLIVSLDNS-KAQEYSSISWDDTLKVNGITKH--------------EFGSQPKVASA 414

Query: 434 NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCK 492
           N  +    A    +  + +    T   +          A S+  +      L  G+    
Sbjct: 415 N--NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA-VGLEEGNTIQV 471

Query: 493 V 493
            
Sbjct: 472 F 472

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 10/111 (9%), Positives = 29/111 (26%), Gaps = 18/111 (16%)

Query: 387 DDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS 444
           +D   A       + +    +  ++                     LS N  +   +   
Sbjct: 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--------VSLSQNYVAV-GLEEG 466

Query: 445 DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
           +   +  + D+     +        +   +  S   P  + + +G    K+
Sbjct: 467 NTIQVFKLSDLEVSFDLK--TPLRAKPSYISIS---PSETYIAAGDVMGKI 512

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 364 IAELRHGDIF--HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCP 418
           +  L   +I+  HS    +  +        A+  V   ++++D      ++     V   
Sbjct: 46  VGSLTDTEIYTEHSHQ-TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF-- 102

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIA--SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
                    +  +SW+  SK RIA      E    V+   T  S        +   SVDF
Sbjct: 103 ------SGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155

Query: 477 SRTEPSMLVSGSDDCKV 493
             + P  ++SGSDD  V
Sbjct: 156 KPSRPFRIISGSDDNTV 172

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 23/124 (18%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
            S +    D Q  A  G   ++ V+  +   V      VH         ++++ ++   F
Sbjct: 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH--------PAEITSVA---F 499

Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTEP--SMLVSGSD 489
           S N   + ++D    V  + V     +        H  +   V +S   P    L +GS 
Sbjct: 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS---PDNVRLATGSL 556

Query: 490 DCKV 493
           D  V
Sbjct: 557 DNSV 560

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 361 LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCP 418
             V  +    ++ HS   V  + +  D    A+A   + IK+++ A+  V          
Sbjct: 225 TGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
                   +L    W K     + S    G +   +            H K   ++  S 
Sbjct: 284 ED-----QQLGI-IWTK---QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334

Query: 479 TEPSMLVSGSDDCKV 493
            +   L S   +  +
Sbjct: 335 -DGKTLFSADAEGHI 348

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 25/129 (19%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRR--IKVFDFASVVNEPADVHCPVVEMPTRSK--LS 429
            S   V  I +D + +  A  G  R     VF          D       +  +++   S
Sbjct: 102 FS-GPVKDISWDSESKRIAAVGEGRERFGHVFL--------FDTGTSNGNLTGQARAMNS 152

Query: 430 CLSWNKFS---KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SML 484
                 F      RI S   +  V +++    +    + EH K   SV ++   P  S+ 
Sbjct: 153 V----DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN---PDGSLF 205

Query: 485 VSGSDDCKV 493
            S   D  +
Sbjct: 206 ASTGGDGTI 214

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEMPTRSKLS 429
           H    ++S+ F  +         SR++  +  A+            H         +K++
Sbjct: 490 HP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--------TAKVA 540

Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
           C+SW+  +  R+A+   +  V VW++       ++    H   + +      E + +VS 
Sbjct: 541 CVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSA 598

Query: 488 SDDCKV 493
             D  +
Sbjct: 599 GQDSNI 604

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--------VVNEPADVHCPVVEMPTR 425
           H+   V S+ ++ D  LFA+ G    I +++             +     H         
Sbjct: 189 HT-KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH--------S 239

Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE-HEKRAWSVDFSRTEPSML 484
             +  L+W+     +IAS+  +  + +W+V T +               +    T    L
Sbjct: 240 GSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-KQAL 297

Query: 485 VSGSDDCKV 493
           VS S +  +
Sbjct: 298 VSISANGFI 306

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 24/135 (17%)

Query: 362 RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCP 418
           +V   +  G           +      Q   +   +  I   +          V   H  
Sbjct: 272 KVEKTIPVG---TR-IEDQQLGIIWTKQALVSISANGFINFVNPEL--GSIDQVRYGH-- 323

Query: 419 VVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVD 475
                    ++ LS    S +   + S+D EG +  WD++T  S     + H      + 
Sbjct: 324 ------NKAITALS---SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374

Query: 476 FSRTEPSMLVSGSDD 490
            +  +  +     DD
Sbjct: 375 TTS-KGDLFTVSWDD 388

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 8/55 (14%)

Query: 441 IASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDCKV 493
             +      V V  +T  +    Y EH  +      S   PS     SG     V
Sbjct: 35  YCNGTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTS---PSGYYCASGDVHGNV 83

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 12/125 (9%), Positives = 37/125 (29%), Gaps = 23/125 (18%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCL 431
           H+   ++++    D +   +A     I  +D ++        DVH  ++        + +
Sbjct: 323 HN-KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI--------TGI 373

Query: 432 SWNKFSKN-RIASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEP--SMLV 485
                +    + +  ++  + V          S     +   +   +  S       + V
Sbjct: 374 K---TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS---ADGDIAV 427

Query: 486 SGSDD 490
           +    
Sbjct: 428 AACYK 432

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 31  AAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-- 88
            ++  +  AS     +  + +++ CPIC++++ +     CGHSFC  C+  + +      
Sbjct: 1   GSSGSSGMASGI---LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDK 57

Query: 89  ----CPCCGHYLTNNQLYPNFLLDKL 110
               CP C        + PN  +  +
Sbjct: 58  GESSCPVCRISYQPENIRPNRHVANI 83

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 61.5 bits (148), Expect = 9e-11
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 36  TAAASTSEVGVSELDKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLR--NKSDCPC- 91
              A   ++ +     ++ CPI  +  +   +   C H F    I  +L+     DCP  
Sbjct: 165 QNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQA 224

Query: 92  -CGHYLTNNQLYPNFLLDKLLKKTSARQISK 121
            C   ++      + +++   K    ++  +
Sbjct: 225 ACSQVVSMRDFVRDPIMELRCKIAKMKESQE 255

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 4/115 (3%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           +S I+      L         + V+      +  A     +  +  +  L C ++   + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYK----FDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            +I     +G +   D+    S      +E         +     L++ S D  +
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 55 CPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCC 92
          CPIC++     +    C H+FCY+CI   +R    CP C
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 38 AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           +S S   +  L  +  C +C++ +KE  +  CGH+FC  CI     +      C
Sbjct: 1  GSSGSSGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPC 55

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCL 431
           HS + VS++ F+RD  L  ++      +++D AS   +    D   P V        S +
Sbjct: 148 HS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV--------SFV 198

Query: 432 SWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSG 487
              KFS N   I ++  +  + +WD +  + +  Y  H+   + +  + +      +VSG
Sbjct: 199 ---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255

Query: 488 SDDCKV 493
           S+D  V
Sbjct: 256 SEDNLV 261

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
           H    +S + +  D  L  +A   + +K++D +S    +    H   V         C +
Sbjct: 64  HK-LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--------FCCN 114

Query: 433 WNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
              F+   N I S  ++  V +WDV T + +     H     +V F+R   S++VS S D
Sbjct: 115 ---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYD 170

Query: 491 CKV 493
              
Sbjct: 171 GLC 173

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 362 RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVV 420
           + +  L       +   VS ++F  + +    A +   +K++D++     +    H    
Sbjct: 182 QCLKTLIDD---DN-PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH---- 233

Query: 421 EMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
               +++  C+  N        I S   + +V +W++ T++ V + + H     S     
Sbjct: 234 ----KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289

Query: 479 TEPSMLVSGS--DDCKV 493
           TE +++ S +  +D  +
Sbjct: 290 TE-NIIASAALENDKTI 305

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 435 KFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDD 490
           KFS N   +ASS  + ++ +W     +       H+     V +S      ++LVS SDD
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SDSNLLVSASDD 86

Query: 491 CKV 493
             +
Sbjct: 87  KTL 89

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 16/123 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
           H+   VSS++F  + +  A++   + IK++        +    H   +        S ++
Sbjct: 22  HT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--------SDVA 72

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDD 490
           W+  S   + S+  +  + +WDV++ + +   + H    +  +F+   P  +++VSGS D
Sbjct: 73  WSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN---PQSNLIVSGSFD 128

Query: 491 CKV 493
             V
Sbjct: 129 ESV 131

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 33 AAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           +  ++   S   V++L ++++CPIC+ I+++     CGH+FC  CI            C
Sbjct: 1  GSSGSSGMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 33 AAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           +  ++   S   V++L ++++CPIC+ I+++     CGH+FC  CI            C
Sbjct: 1  GSSGSSGMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 374 HSANIVSSIEFD-RDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCPVVEMPTRSKLS 429
              + ++ ++F+  +      + +     + DF+     V    D               
Sbjct: 117 PG-DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW--------DYWYC 167

Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489
           C+  +  S+  +A+ D  G + +  +   + + + + H+ +    +F+     ++ + S 
Sbjct: 168 CVDVS-VSRQMLATGDSTGRLLLLGLDGHE-IFKEKLHKAKVTHAEFNPRCDWLMATSSV 225

Query: 490 DCKV 493
           D  V
Sbjct: 226 DATV 229

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 13/122 (10%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVF--DFASV-VNEPADVHCPVVEMPTRSKLSCLSW 433
           +I+  I      Q           + F     S  ++  A             +++ L W
Sbjct: 30  SILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPF--------DRRVTSLEW 81

Query: 434 NKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
           +      +A     G + +WD   Q   S ++          + F++   + L   S   
Sbjct: 82  HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141

Query: 492 KV 493
             
Sbjct: 142 AT 143

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
                ++     Q+ AT   + R+ +           D H    E   ++K++   +N  
Sbjct: 164 YWYCCVDVSVSRQMLATGDSTGRLLLLG--------LDGHEIFKEKLHKAKVTHAEFNPR 215

Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
               +A+S  +  V +WD+   +    Y     HEK   +  F+ T+ + L++     ++
Sbjct: 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS 432
           H    V+  EF+     L AT+ V   +K++D  ++     D +  + EMP    ++   
Sbjct: 203 HK-AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI----KDKNSYIAEMPHEKPVNAAY 257

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR----------AWS----VDFSR 478
           +N     ++ ++D    + V+         +   H  R           W     +  + 
Sbjct: 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317

Query: 479 TEPSMLVSGSDD 490
             P   +  +D 
Sbjct: 318 RYPDDQLLLNDK 329

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 47  SELDKDMLCPICMQIIKEAFL-------TACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99
           +     + CPICM    E          T CGH FC  C+   L+N + CP C   + + 
Sbjct: 2   AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61

Query: 100 QLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCG 138
           + +P ++    +       +   +  ++N R  +   CG
Sbjct: 62  RYHPIYIGSGTVSC--PICMDGYSEIVQNGRLIVSTECG 98

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 50  DKDMLCPICMQIIKE-------AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLY 102
              + CPICM    E          T CGH FC  C+   L+N + CP C   + + + +
Sbjct: 70  SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129

Query: 103 PNFL 106
           P ++
Sbjct: 130 PIYI 133

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 38 AASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           +S S   V +L  +  C ICM    +  L  C HSFC  CI        +CP C
Sbjct: 1  GSSGSSGRVKQLTDEEECCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRNCPIC 54

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 53  MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103
           MLC I  ++ +   L+      F    +  ++++  + P     L+  ++  
Sbjct: 4   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 16/123 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
            S + V  I+F   +    T   S R++++++ + V      V     E P R+      
Sbjct: 12  RS-DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT----ETPVRAG----- 61

Query: 433 WNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
             KF   KN I     +  + V++  T + V+++E H     S+    T+P  ++SGSDD
Sbjct: 62  --KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDD 118

Query: 491 CKV 493
             V
Sbjct: 119 LTV 121

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 15/125 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCL 431
           H  + + SI          +      +K++++ +   + +  + H   V         C+
Sbjct: 96  HP-DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV--------MCV 146

Query: 432 SWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE-HEKRAWSVDFSRTEP--SMLVSGS 488
           ++N    +  AS   +  V VW +             E+    VD+    P    +++ S
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY-PLPDKPYMITAS 205

Query: 489 DDCKV 493
           DD  +
Sbjct: 206 DDLTI 210

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 34/133 (25%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL----- 428
                V + +F              RI+VF++                  T  K+     
Sbjct: 54  TE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYN-----------------TGEKVVDFEA 95

Query: 429 -----SCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTE 480
                  ++       K  + S   +  V +W+     ++ + +E HE     V F+  +
Sbjct: 96  HPDYIRSIA---VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152

Query: 481 PSMLVSGSDDCKV 493
           PS   SG  D  V
Sbjct: 153 PSTFASGCLDRTV 165

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 374 HSANIVSSIEFD-RDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSC 430
           H  + V  + F+ +D   FA+  + R +KV+                  V        + 
Sbjct: 139 HE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV--------NY 189

Query: 431 LSWNKFS----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486
           +    +     K  + ++  +  + +WD  T+  V   E H        F  T P +++S
Sbjct: 190 VD---YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245

Query: 487 GSDDCKV 493
           GS+D  +
Sbjct: 246 GSEDGTL 252

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-EPSMLVSGSDD 490
            I S   +G + +W+ +T +         +R+W +    T   + + SG D+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 379  VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
               + F  ++ +       R +++    +   +   +          +++SC      S 
Sbjct: 925  EIDVVFQENETMVLAVDNIRGLQLIAGKT--GQIDYLP--------EAQVSCCC---LSP 971

Query: 439  N--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            +   +A  D +G + + ++   +       H+K    + F+      L+S S+D  +
Sbjct: 972  HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVI 1027

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 379  VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
            V  I+F  D +   ++     I+V++               ++    +        +  +
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWN-------WQTGDYVFLQAHQETVKDF----RLLQ 1054

Query: 439  N-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
            + R+ S  ++G V VW+V T +   ++  H+    S   S      +   S S D   
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS---SDATKFSSTSADKTA 1109

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCL 431
           H+ + V    F +D Q  A+ G  + ++VF   +           ++++       L C 
Sbjct: 614 HT-DAVYHACFSQDGQRIASCGADKTLQVFKAET--------GEKLLDIKAHEDEVLCC- 663

Query: 432 SWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-EPSMLVSGS 488
               FS +   IA+   +  V +WD  T + V  Y+EH ++     F+      +L +GS
Sbjct: 664 ---AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720

Query: 489 DDCKV 493
           +D  +
Sbjct: 721 NDFFL 725

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 21/139 (15%)

Query: 362  RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCP 418
              + EL+     H+   V    F  D  L AT   +  I++++ +    + +        
Sbjct: 1118 SPLHELKG----HN-GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172

Query: 419  VVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
                             FS +   + S+   G +  W+V T  S   +  +      +  
Sbjct: 1173 GTATHGGWVTDV----CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHV 1226

Query: 477  SRTEP--SMLVSGSDDCKV 493
            S   P     V+  +   +
Sbjct: 1227 S---PDFRTYVTVDNLGIL 1242

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 11/127 (8%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCPVVEMPTRSKLSC 430
           H+ N V+   F  DD+L A+      ++++D  S     +          E P       
Sbjct: 742 HT-NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800

Query: 431 LSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVS 486
           +    +S +  +I  +    ++     T+      +  H       DFS   P   + V 
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS---PYDHLAVI 857

Query: 487 GSDDCKV 493
                 V
Sbjct: 858 ALSQYCV 864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 25/148 (16%)

Query: 352 LTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VV 409
             +           +           IV    +  D      A    ++ +FD  +  ++
Sbjct: 778 RKSINVKRFFLSSEDPPED---VE-VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLL 832

Query: 410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEH 467
            E    H         S +       FS        +  +  V +W++ ++  V +   H
Sbjct: 833 AEIHTGH--------HSTIQYCD---FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH 881

Query: 468 EKRAWSVDFSRTEP--SMLVSGSDDCKV 493
                 V FS   P  S  ++ SDD  +
Sbjct: 882 LSWVHGVMFS---PDGSSFLTASDDQTI 906

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 19/122 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H  + V  + F  D   F TA   + I+V++   V        C    +  + ++  +  
Sbjct: 881 HL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKV--------CKNSAIVLKQEIDVV-- 929

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
             F +N   + + D    + +    T Q        E +      S      +  G +D 
Sbjct: 930 --FQENETMVLAVDNIRGLQLIAGKTGQID---YLPEAQVSCCCLSPHL-EYVAFGDEDG 983

Query: 492 KV 493
            +
Sbjct: 984 AI 985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 436  FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDC 491
             S +  + +S+  +    +W       + E + H        FS       +L +G D+ 
Sbjct: 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS---LDGILLATGDDNG 1149

Query: 492  KV 493
            ++
Sbjct: 1150 EI 1151

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 18/123 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
           H  + +   +F   D L   A     +++++  S +       H   V          + 
Sbjct: 839 HH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV--------HGVM 889

Query: 433 WNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
              FS +     ++  +  + VW+              K+   V F   E +M+++  + 
Sbjct: 890 ---FSPDGSSFLTASDDQTIRVWETKKVCKNSAI--VLKQEIDVVFQENE-TMVLAVDNI 943

Query: 491 CKV 493
             +
Sbjct: 944 RGL 946

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 21/122 (17%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLSWNKFS 437
           V    F  DD   AT    +++K++D A+  +    D H       +     C     F+
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH-------SEQVNCC----HFT 708

Query: 438 ----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDC 491
                  +A+   +  + +WD+  ++       H        FS   P   +L S S D 
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS---PDDELLASCSADG 765

Query: 492 KV 493
            +
Sbjct: 766 TL 767

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 374 HSANIVSSIEFD-RDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSC 430
           H+A  V  I +   +D + A+      + V++          +  PV+ +   T+ ++  
Sbjct: 80  HTAP-VLDIAWCPHNDNVIASGSEDCTVMVWEIPDG-GLVLPLREPVITLEGHTK-RVGI 136

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME--YEEHEKRAWSVDFSRTEPSMLVSGS 488
           ++W+  ++N + S+  + ++ VWDV T  +V+    + H    +SVD+SR   +++ +  
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSC 195

Query: 489 DDCKV 493
            D +V
Sbjct: 196 RDKRV 200

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 20/131 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVH-----CPVVEMPTRS 426
           H  + + S+++ RD  L  T+   +R++V +     VV E    H        V +    
Sbjct: 175 HP-DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233

Query: 427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSML 484
            L+      FS+     S+ +  V +WD    +  +  +E           F      + 
Sbjct: 234 ILTTG----FSR----MSERQ--VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283

Query: 485 VSGSDDCKVLY 495
           + G  D  + Y
Sbjct: 284 LCGKGDSSIRY 294

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 16/134 (11%)

Query: 369 HGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-----VVNEPADVHCPVVEMP 423
           H +I ++ + +  +          T      +KV+D           EP           
Sbjct: 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN------ 163

Query: 424 TRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR--T 479
            R   +    N +++    + +    G + ++D+       E    +    S++F R   
Sbjct: 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222

Query: 480 EPSMLVSGSDDCKV 493
             + LV+ S + K 
Sbjct: 223 SMNKLVATSLEGKF 236

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 17/145 (11%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 356 TRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415
            +   +  +  ++  +      +     +++++++      +  IK+FD  +        
Sbjct: 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-------- 199

Query: 416 HCPVVEMPTRSKLSCLSW--NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE-----HE 468
                E   ++ +  L +     S N++ ++  EG   V+D+ TQ     +       H+
Sbjct: 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259

Query: 469 KRAWSVDFSRTEPSMLVSGSDDCKV 493
              W V        + ++      +
Sbjct: 260 STVWQVRHLPQNRELFLTAGGAGGL 284

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 360 RLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHC 417
            L+++ E+            +        +  AT      + +++  +  +       H 
Sbjct: 55  DLKLLREIEKAKPIKC---GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK 111

Query: 418 PVVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEE-----HEKR 470
            ++     +           +    I +   +G V VWD   +   +   E     +++ 
Sbjct: 112 EII----NAIDGIGGLG-IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166

Query: 471 AWSVDFSRT---EPSMLVSGSDDCKV 493
            W+V F      E  ++ +G D+  +
Sbjct: 167 CWTVAFGNAYNQEERVVCAGYDNGDI 192

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 22/143 (15%)

Query: 363 VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR----IKVFDFASVVNEPADVHCP 418
           +IA ++ G    +   V   ++      F T G   R    I++++              
Sbjct: 9   IIAHIQKG---FN-YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH------GDLKL 58

Query: 419 VVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVD 475
           + E+     + C ++   S     +A+ D+ G + +W++   +  V   + H++   ++D
Sbjct: 59  LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAID 118

Query: 476 FSRTE-----PSMLVSGSDDCKV 493
                        +V+GS D  V
Sbjct: 119 GIGGLGIGEGAPEIVTGSRDGTV 141

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 30/154 (19%)

Query: 362 RVIAELRHGDIFHSANIVSSIEFDRDD---QLFATAGVSRRIKVFDFASVVNEPADVHCP 418
            +  E    +       V S+EFDR D          +  +  VFD  +    P      
Sbjct: 201 ALRWETNIKNG------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRT--QHPTKGFAS 252

Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE------------ 466
           V E   +S +  +     ++    ++   G + +W         + +             
Sbjct: 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312

Query: 467 -------HEKRAWSVDFSRTEPSMLVSGSDDCKV 493
                    +   S+D+S  +  + V  S D  V
Sbjct: 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLS 432
              + V S+++  +  L A      + ++F       E      P    MP    +   S
Sbjct: 141 IR-STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199

Query: 433 WNK-------FSK--NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM 483
            +        FS   +R+A   ++  V + D   + +V           +V F  TE S+
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI-TESSL 258

Query: 484 LVSGSDDCKVLY 495
           + +G D   VL+
Sbjct: 259 VAAGHDCFPVLF 270

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSVDFSRTEP--SMLVSGSD 489
           ++K+  +IA       V +++ +  + V  +  +EH  +   VD++   P  + +V+   
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA---PDSNRIVTCGT 72

Query: 490 DCKV 493
           D   
Sbjct: 73  DRNA 76

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 20/128 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H+   V+ +++  D     T G  R   V+       +P      V+    R+       
Sbjct: 51  HN-GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT----LVILRINRAARCV--- 102

Query: 434 NKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFSRTEP--SMLV 485
            +++  + + A      ++++     +      +           S+D+    P   +L 
Sbjct: 103 -RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH---PNSVLLA 158

Query: 486 SGSDDCKV 493
           +GS D K 
Sbjct: 159 AGSCDFKC 166

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 362 RVIAELRHGDIFHSANIVSSIEF---DRDDQLFATAGVS-RRIKVFDFASVVNEPADVHC 417
           + +  L+     H+   +  ++F    ++      A V   R+ +++  S   E   +  
Sbjct: 8   KCVNSLKED---HN-QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQS 62

Query: 418 PVVEMPTRSKLSCLSW---NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV 474
            V      +  +C +W   +  S   +A +   GI+ + +  T Q +  Y  H      +
Sbjct: 63  YVDADADENFYTC-AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL 121

Query: 475 DFSRTEPSMLVSGSDDC 491
            F   +P++L+S S D 
Sbjct: 122 KFHPRDPNLLLSVSKDH 138

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 36/154 (23%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-----VVNEPADVHCPVVEMPTRSKL 428
           H  + V S ++D   +   + G+   +K++   S      + E  D +      P  S+ 
Sbjct: 160 HR-DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218

Query: 429 SCLSWN--------------KFSKNRIASSDYEGIVTVWDVTTQQSVME----------- 463
                +              ++  + I S   E  +  W     +  ++           
Sbjct: 219 IHF-PDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277

Query: 464 ---YEEHEKRAWSVDFSRTEP-SMLVSGSDDCKV 493
              ++  +   W + FS      ML  G+   K+
Sbjct: 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 43/153 (28%)

Query: 362 RVIAELR-HGDIFHSANIVS---SIEFDRDDQLFATAGVSRRIKVFDFAS---------- 407
             I  L+ + D     N  +   + + +    L A AG    I++ +  +          
Sbjct: 55  GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH 114

Query: 408 --VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE 465
              +N                    L ++    N + S   +  + +W++ T   V  + 
Sbjct: 115 GNAIN-------------------ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155

Query: 466 E---HEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
               H     S D+         ++S   D  +
Sbjct: 156 GVEGHRDEVLSADYD---LLGEKIMSCGMDHSL 185

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 430 CLSWNKFSK---NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR---------AWSVDFS 477
            + +N  SK     + ++     VT+++  +Q  +   + +            AW+ D +
Sbjct: 23  GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN 82

Query: 478 RTEPSMLVSGSDDCKV 493
            + P +L        +
Sbjct: 83  TSHP-LLAVAGSRGII 97

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEY----EEHEKRAW--SVDFSRTEPSMLVSGSDDCK 492
             +A  +  G + VWD+  +            H+  A      FSR   S+L++  DD  
Sbjct: 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDAS 358

Query: 493 V 493
           +
Sbjct: 359 I 359

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 22/139 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H  + V S+ FD   Q  A+    R ++++      NE           P+   +  LS 
Sbjct: 193 HE-STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE--QGVACSGSDPSWKCICTLSG 249

Query: 434 N--------KFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEE---------HEKRAWSV 474
                     + +    +A++  +  + V+         +            H +    V
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309

Query: 475 DFSRTEPSMLVSGSDDCKV 493
            ++  EP +L S SDD +V
Sbjct: 310 AWNPKEPGLLASCSDDGEV 328

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 24/130 (18%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEMPTRSKLS 429
           H  +    + ++    L A+ G  RRI+++          +  ++ H        R+   
Sbjct: 14  HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-------QRTVRK 66

Query: 430 CLSWNKFSKN--RIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEP--SM 483
                 +S     +AS+ ++    +W       + V   E HE    SV ++   P  ++
Sbjct: 67  V----AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA---PSGNL 119

Query: 484 LVSGSDDCKV 493
           L + S D  V
Sbjct: 120 LATCSRDKSV 129

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVME--YEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
             +AS+ Y+  V ++       V     E HE   WS+ F    P    L S SDD  V
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD---PSGQRLASCSDDRTV 218

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 18/137 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---------VVNEPADVHCPVVEMPT 424
           H    V+ I      +   +A +   I++++  +           N    V+   + + T
Sbjct: 180 HR-ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT 238

Query: 425 RSKLSCLSWNK-----FSKN--RIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDF 476
             +L  +S +K     F      + +    G++TV +V +++  ++   +      S+  
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298

Query: 477 SRTEPSMLVSGSDDCKV 493
                + + +G ++  +
Sbjct: 299 DGNNANYIYAGYENGML 315

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 14/117 (11%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
           +      F++       A +     +F+                        +  +    
Sbjct: 57  DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR--------ADYTAVDTAK-L 107

Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDC 491
              R      EG + V D          + H      + F    P    L+S S D 
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF---PSGEALISSSQDM 161

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 11/124 (8%), Positives = 30/124 (24%), Gaps = 9/124 (7%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H    ++      D +           + +            H  VV   +R  +     
Sbjct: 3   HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRG-VDAGKG 61

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSD 489
           N F K    +  +  +G   +++   +       +                    + G+ 
Sbjct: 62  NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-LKRADYTAVDTAK---LQMRRFILGTT 117

Query: 490 DCKV 493
           +  +
Sbjct: 118 EGDI 121

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWN 434
           S +  +++EF    +      VS  I V +  S            +++P++   SC S  
Sbjct: 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS--------KEQTIQLPSKFTCSCNSLT 297

Query: 435 KFSK---NRIASSDYEGIVTVWDVTTQQSVME--YEEHEKRAWSVDFSRTEP-SMLVSGS 488
                  N I +    G++  WD+ + +  +            +V F+     ++ VS  
Sbjct: 298 -VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA---AGALFVSSG 353

Query: 489 DDCKV 493
            D  +
Sbjct: 354 FDTSI 358

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
             + SS  +  + +W V    +      H      +           ++S S D  +
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII---DRGRNVLSASLDGTI 205

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 15/135 (11%), Positives = 39/135 (28%), Gaps = 29/135 (21%)

Query: 374 HSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFAS---VVNEPADVHCPVVEMPTRSKLS 429
            +    +S+  D ++         +  +  +D  S    V E        +        +
Sbjct: 289 FT-CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI--------N 339

Query: 430 CLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS----------- 477
            +    F+      SS ++  + +  ++  +S     E E   + V              
Sbjct: 340 NVY---FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396

Query: 478 -RTEPSMLVSGSDDC 491
             +   +L  G ++ 
Sbjct: 397 DESNGEVLEVGKNNF 411

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 374 HSANIVS--SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCL 431
           H + I+S  +   D +D + +T  V     +F+       P D+      +      + +
Sbjct: 307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN-------PKDIATTKTTVSRFRGSNLV 359

Query: 432 S--WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489
              +     +    SD    +         +V      E    ++  SR  P M+++GS 
Sbjct: 360 PVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSA 417

Query: 490 DCKV 493
           D  +
Sbjct: 418 DGSL 421

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 372 IFHSANIVSSIEF------DRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR 425
           I HS   V  +++             +       I   +   + N        + E P+ 
Sbjct: 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI--IDNATDVHVFKMCEKPSL 260

Query: 426 S----KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE-HEKRAWSVDF--SR 478
           +         +++  S   +      G V  +D+T  +    Y++ H+    SV    S 
Sbjct: 261 TLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320

Query: 479 TEPSMLVSGSDDCKV 493
            E +++ + + D   
Sbjct: 321 FEDTVVSTVAVDGYF 335

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 24/139 (17%)

Query: 374 HSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS 432
           +  N ++S      +     T      IK+++   +     +V+   +     S ++ ++
Sbjct: 61  NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEI--IVGEVYSSSLTYDCSSTVTQIT 118

Query: 433 WNKFSKN--RIASSDYEGIVTVWDVTTQQS----------------VMEYEEHEKRAWSV 474
                 N    A S  +G + V  V   Q                 +  + ++E      
Sbjct: 119 ---MIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175

Query: 475 DFSRTEPSMLVSGSDDCKV 493
            F   E S+LV+ ++  +V
Sbjct: 176 AFVNEEKSLLVALTNLSRV 194

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 371 DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSC 430
               S N +S+I    +D++  T   +  I +F    + +    V  P            
Sbjct: 324 CGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQ- 380

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS-MLVSGSD 489
                       +++   ++     T+  SV +   H     S+     + + +LV+  +
Sbjct: 381 -----------VTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429

Query: 490 DCKV 493
              +
Sbjct: 430 SGLI 433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 18/141 (12%)

Query: 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHS------ANIVSSIEFDRDDQLFATAGVSRRI 400
           + +S+L   T  SR+ +  ++R  +             VSSI  D +  +         I
Sbjct: 180 EEKSLLVALTNLSRVIIF-DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGII 238

Query: 401 KVFD--FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR--IASSDYEGIVTVWDVT 456
            ++D  F  ++   +      +               + KN   +     +  +T+W+  
Sbjct: 239 DIWDIRFNVLIRSWSFGDHAPIT-------HVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291

Query: 457 TQQSVMEYEEHEKRAWSVDFS 477
                  +   +++     F 
Sbjct: 292 KGHCQYAFINSDEQPSMEHFL 312

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 21/147 (14%)

Query: 357 RYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFAS---VVNEP 412
           ++     I ++   +   +   V    F  +++ L        R+ +FD  +   +    
Sbjct: 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209

Query: 413 ADVHCPVVEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR 470
                  V        S +           +      GI+ +WD+     +  +   +  
Sbjct: 210 NSPRHGAV--------SSIC---IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258

Query: 471 A----WSVDFSRTEPSMLVSGSDDCKV 493
                    F      ++V GS    +
Sbjct: 259 PITHVEVCQFYGKNSVIVVGGSSKTFL 285

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
                V +  +       A  G+  +  V+      NE        V M T    +C   
Sbjct: 105 PC-TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC--- 160

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP-SMLVSGSDD 490
             F+ +  +I ++  +G   +WDV + Q +  +  H      +D + +E  +  VSG  D
Sbjct: 161 -SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219

Query: 491 CKV 493
            K 
Sbjct: 220 KKA 222

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 22/127 (17%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCPVVEMPTRSKLSC 430
           H  + V+S+ +      FA+       +++D  +   V     +              S 
Sbjct: 239 HE-SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA--------SS 289

Query: 431 LSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVS 486
           +    FS +   + +   +  + VWDV     V     HE R  ++  S   P  +   S
Sbjct: 290 VD---FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS---PDGTAFCS 343

Query: 487 GSDDCKV 493
           GS D  +
Sbjct: 344 GSWDHTL 350

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDC 491
           + K+  RI SS  +G V VWD  T               +  ++   PS   +  G  D 
Sbjct: 72  WCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYA---PSGCAIACGGLDN 128

Query: 492 KV 493
           K 
Sbjct: 129 KC 130

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
           N   S   +    VWD+ + Q V  +E HE    SV +    P      SGSDD   
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY---PSGDAFASGSDDATC 264

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 24/143 (16%)

Query: 362 RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-----IKVFDFAS--VVNEPAD 414
           + +A  +          V  +EF      F     +       I +++       +E   
Sbjct: 107 QCVATWKS----PVP--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160

Query: 415 VHCPVVEMPT----RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME-YEEHEK 469
           V    +            +   W+   K  I +   +G ++ +DV+     ++  + HEK
Sbjct: 161 VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEK 219

Query: 470 RAWSVDFSRTEP--SMLVSGSDD 490
               + FS   P  +  ++ S D
Sbjct: 220 SISDMQFS---PDLTYFITSSRD 239

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEM---PTRSKL 428
           H    +S ++F  D   F T+       + D ++  V+ +  +  CP+      P +  +
Sbjct: 217 HE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-ETDCPLNTAVITPLKEFI 274

Query: 429 SCLSWNKFSKNR-IASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLV 485
                 +       ++++ +     +    ++ +   + H     +V  S   P  +   
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---PQGTSYA 331

Query: 486 SGSDDCKV 493
           SG +D  +
Sbjct: 332 SGGEDGFI 339

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 435 KFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDD 490
           K++K    + S   +   +VW     + +   + H    WS+D           V+GS D
Sbjct: 39  KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD---CFTKYCVTGSAD 95

Query: 491 CKV 493
             +
Sbjct: 96  YSI 98

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +      +     ++   +    ++   HE+    V +++ E  +L S S D   
Sbjct: 3   SSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSA 56

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 22/127 (17%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV---VNEPADVHCPVVEMPTRSKLSC 430
              N + S +   D       G +  + ++D A+    +        P            
Sbjct: 96  RD-NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC--------YA 146

Query: 431 LSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVS 486
           L+    S +     S   +G + VWD+  Q  V +++ H   A  +D S      + L +
Sbjct: 147 LA---ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---NDGTKLWT 200

Query: 487 GSDDCKV 493
           G  D  V
Sbjct: 201 GGLDNTV 207

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 25/136 (18%)

Query: 362 RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE 421
           R + +            + S+ +    +  A    S  ++V            +H   V 
Sbjct: 216 RQLQQHDFTSQ------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV- 268

Query: 422 MPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT 479
                 LS     KF+       S+  + ++  W      S+ +  +      S D S  
Sbjct: 269 ------LSL----KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDIS-- 315

Query: 480 EP--SMLVSGSDDCKV 493
                 +V+GS D K 
Sbjct: 316 -VDDKYIVTGSGDKKA 330

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H  + +++I F  +   FAT       ++FD  +           ++     + +  ++ 
Sbjct: 225 HE-SDINAICFFPNGNAFATGSDDATCRLFDLRA--------DQELMTYSHDNIICGITS 275

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSD 489
             FSK+   + +   +    VWD            H+ R   +  +        + +GS 
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT---DDGMAVATGSW 332

Query: 490 DCKV 493
           D  +
Sbjct: 333 DSFL 336

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 23/128 (17%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-----VVNEPADVHCPVVEMPTRSKL 428
            S + V +  +       A  G+     +++  +      V+     H           L
Sbjct: 96  RS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH--------TGYL 146

Query: 429 SCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLV 485
           SC     F   N+I +S  +    +WD+ T Q    +  H     S+  +   P   + V
Sbjct: 147 SCCR---FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---PDTRLFV 200

Query: 486 SGSDDCKV 493
           SG+ D   
Sbjct: 201 SGACDASA 208

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDC 491
           +  +   + S+  +G + +WD  T   V           +  ++   PS   +  G  D 
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA---PSGNYVACGGLDN 119

Query: 492 KV 493
             
Sbjct: 120 IC 121

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
               S   +    +WDV        +  HE    ++ F    P  +   +GSDD   
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF---PNGNAFATGSDDATC 250

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H+A++  +      +  F TA   + IK++    V+   + +H  VV          L+ 
Sbjct: 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV--------RHLA- 191

Query: 434 NKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
                +    S   +G++ + D+ T   +  YE HE   + +         +VS  +D  
Sbjct: 192 --VVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN--GDIVSCGEDRT 247

Query: 493 V 493
           V
Sbjct: 248 V 248

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
           +++AS   +G V +W    Q         +    SV +        +L+ G  D  +
Sbjct: 30  SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD---SEKELLLFGGKDTMI 83

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 439 NRIASSDYEGIV---TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             +     + ++    ++  + +  +     H+    S+ F      +++SGS D   
Sbjct: 72  ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTA 126

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           F    + S  ++    VW       V   + H    W         +  ++ S D  +
Sbjct: 112 FQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 38  AASTSEVGVSELDKDMLCPICMQIIKEAFLT----ACGHSFCYMCIITHLRNKSD---CP 90
            +S S   +  L + + CPICM+   E  L      CGH+ C  C+   L +  +   CP
Sbjct: 1   GSSGSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCP 60

Query: 91  CC--GHYLTN-NQLYPNFLLDKLLKKT 114
            C     +T+  QL  N  + K    +
Sbjct: 61  FCSKITRITSLTQLTDNLTVLKSGPSS 87

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.2 bits (127), Expect = 8e-08
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 13  VKPDMKPSSTD-TAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACG 71
           + PD +  + D T   E              E+         LC IC +  K+  +  CG
Sbjct: 292 LFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCG 351

Query: 72  HSFCYMCIITHLRNKS-DCPCC 92
           H  C  C+ +   ++   CP C
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFC 373

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 40  STSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99
            ++E+  S+   +   P+   ++ +      G       I+ HL N    P     LT +
Sbjct: 2   GSAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61

Query: 100 QLYPNFLL 107
            L P   L
Sbjct: 62  MLEPVPEL 69

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 35/141 (24%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC---------PVVEMPT 424
           H  ++V  + +D   +  AT    + IKVF    +  + ++             +V    
Sbjct: 10  HD-DLVHDVVYDFYGRHVATCSSDQHIKVFK---LDKDTSNWELSDSWRAHDSSIV---- 61

Query: 425 RSKLSCLSWN--KFSKNRIASSDYEGIVTVWDVTTQQSVME---------YEEHEKRAWS 473
                 + W   ++ +  IAS+ Y+  V +W+    Q               + +   +S
Sbjct: 62  -----AIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115

Query: 474 VDFSRTEP-SMLVSGSDDCKV 493
           V F+       L    +D  +
Sbjct: 116 VKFAPAHLGLKLACLGNDGIL 136

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 374 HSANIVSSIEF--DRDDQLFATAGVSRRIKVFDFASVVNE---PADVHCPVVEMPTR--- 425
              + + S++F         A  G    ++++D     +           V+ +P     
Sbjct: 109 SKGS-LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167

Query: 426 SKLSCLSW--NKFSKNRIASSDYEGIVTVWDVTTQQSVME--YEEHEKRAWSVDFS---R 478
               CLSW  ++FS  ++A S  E  +        +  +      H+    S+ ++    
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG 227

Query: 479 TEPSMLVSGSDDCKV 493
               ++ +G  D ++
Sbjct: 228 RWYQLIATGCKDGRI 242

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 360 RLRVIAELR-HGDIFHSANIVSSIEF----DRDDQLFATAGVSRRIKVFDFASVVNEPAD 414
           +L V A+L  H  +      + SI +     R  QL AT     RI++F     +  P  
Sbjct: 203 KLHVAAKLPGHKSL------IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL-SPLA 255

Query: 415 VHCPVVEMPTRSKLSCLSWN-KFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWS 473
               +      S +   S +        + S+ E    +      + + E+++H    WS
Sbjct: 256 SEESLT----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311

Query: 474 VDFSRTEPSMLVSGSDDCKV 493
           V ++ T  ++L S  DD KV
Sbjct: 312 VSWNLTG-TILSSAGDDGKV 330

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 20/129 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS---VVNEPADVH-CPVVEMPTRSKLS 429
           H  +++   + D      AT    R +K+FD  +   ++      H  PV          
Sbjct: 12  HE-DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV---------W 61

Query: 430 CLSW--NKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEP-SML 484
            ++W    +    +AS  Y+  V +W           E+  H+    SV ++  +   +L
Sbjct: 62  QVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLIL 120

Query: 485 VSGSDDCKV 493
             GS D  +
Sbjct: 121 ACGSSDGAI 129

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 20/130 (15%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEMPTRSKLSC 430
           S     S +     + FA+ G    IK++           +  + H        R     
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH----SDWVRD---- 217

Query: 431 LSW---NKFSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSM 483
           ++W        + IAS   +G V +W          S     +     W V +S T  ++
Sbjct: 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NI 276

Query: 484 LVSGSDDCKV 493
           L     D KV
Sbjct: 277 LAVSGGDNKV 286

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 48 ELDKDML-CPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
          E +   L C  C    K   L  C H+ C  C+     +   CP C
Sbjct: 1  EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLE---ASGMQCPIC 43

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 19/126 (15%)

Query: 374 HSANIVSSIEFD-RDDQLFATAGVSRRIKVFDFAS---VVNEPADVHCPVVEMPTRSKLS 429
                ++ ++F+  +   F  + +    ++ DF      V   +D               
Sbjct: 163 AG-GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWF--------C 213

Query: 430 CLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
            L     S     + + D  G V + ++  ++ +     H+K+   V  +      L + 
Sbjct: 214 SLD---VSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATA 269

Query: 488 SDDCKV 493
           S D  V
Sbjct: 270 SVDQTV 275

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 5/63 (7%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 436 FS---KNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
           +     + +A     G + +W+   +   + ++          + F+    +   + S +
Sbjct: 127 WHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186

Query: 491 CKV 493
              
Sbjct: 187 GTT 189

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD 475
              +V    + KL   SW      +     +     +  + + + + +    ++RA S+ 
Sbjct: 74  CRSIVRTLHQHKLGRASWPSVQ--QGLQQSF-----LHTLDSYRILQKAAPFDRRATSLA 126

Query: 476 FSRTEPSMLVSGSDDCKV 493
           +  T PS +  GS    +
Sbjct: 127 WHPTHPSTVAVGSKGGDI 144

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 15/71 (21%), Positives = 26/71 (36%)

Query: 37  AAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYL 96
           A  + +E+  S+   +   P+   ++ +      G       I+ HL N    P     L
Sbjct: 14  AKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73

Query: 97  TNNQLYPNFLL 107
           T + L P   L
Sbjct: 74  TESMLEPVPEL 84

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 20/129 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---H-CPVVEMPTRSKLS 429
           H+  ++     D   +  AT    + IK+F+     ++  D    H  PV          
Sbjct: 8   HN-EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV---------W 57

Query: 430 CLSW--NKFSKNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEP-SML 484
            + W   KF    +AS  Y+G V +W         +  +  H     SV ++  E   ML
Sbjct: 58  RVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPML 116

Query: 485 VSGSDDCKV 493
           +  S D KV
Sbjct: 117 LVASSDGKV 125

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 31/136 (22%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCL--- 431
           +          ++ + F T G    +K++ + S             +  T    S L   
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-------------DAQTYVLESTLEGH 203

Query: 432 ---------SWNKFSKNRIASSDYEGIVTVWDVTT-----QQSVMEYEEHEKRAWSVDFS 477
                    S     ++ +AS   +    +W         ++++++ E+     W   +S
Sbjct: 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263

Query: 478 RTEPSMLVSGSDDCKV 493
            +  ++L     D KV
Sbjct: 264 LSG-NVLALSGGDNKV 278

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 16/135 (11%)

Query: 374 HSANIVSSIEF--DRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEM----PT 424
           HS   V+S+++       +   A    ++ V +F         +   H   V      P 
Sbjct: 98  HS-ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156

Query: 425 RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFS--R 478
             +            +  +   + +V +W   +       E     H      V +S   
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216

Query: 479 TEPSMLVSGSDDCKV 493
              S + S S D   
Sbjct: 217 LLRSYMASVSQDRTC 231

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 435 KFSK--NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
           K+S   + ++     G+V ++DV +Q  +     H+ R   + ++     +L SGS    
Sbjct: 141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGA 197

Query: 493 VL 494
           + 
Sbjct: 198 IH 199

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 15/122 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
            S   V+S+++  D    +    +  + ++D  S         H   V         CLS
Sbjct: 133 ES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV--------GCLS 183

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
           WN+   + ++S    G +   DV      +   + H      + +       L SG +D 
Sbjct: 184 WNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDN 239

Query: 492 KV 493
            V
Sbjct: 240 VV 241

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 428 LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVS 486
           L+ L W   S   + +   E  V VW+  +       E +      SV +S  + S L  
Sbjct: 96  LNLLDW---SNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSV 151

Query: 487 GSDDCKV 493
           G  +  V
Sbjct: 152 GLGNGLV 158

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 26/128 (20%)

Query: 374 HSANIVSSIEFDRDDQ-LFATAGVS--RRIKVFDFAS--VVNEPADVHCPVVEMPTRSKL 428
           H+A  V ++ +      L AT G +  ++I  ++ A+   VN   D    V         
Sbjct: 258 HNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQV--------- 306

Query: 429 SCLSWNKFSKNRIASSD--YEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEP--S 482
           + L W+  SK  I S+    +  +++W  ++      ++   H+ R      S   P   
Sbjct: 307 TSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS---PDGR 362

Query: 483 MLVSGSDD 490
           +L + + D
Sbjct: 363 ILSTAASD 370

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEMPTRSKLSC 430
           H+  ++     D   +  AT    + IK+F+     ++  D    H   V          
Sbjct: 8   HN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--------WR 58

Query: 431 LSWNKFSK--NRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEP-SMLV 485
           + W    K    +AS  Y+G V +W         +  +  H     SV ++  E   +L+
Sbjct: 59  VDWA-HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 117

Query: 486 SGSDDCKV 493
             S D KV
Sbjct: 118 VASSDGKV 125

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 31/136 (22%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCL--- 431
           +          ++ + F T G    +K++ + S             +  T    S L   
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-------------DAQTYVLESTLEGH 203

Query: 432 -SW--------NKFSKNRIASSDYEGIVTVWDVTT-----QQSVMEYEEHEKRAWSVDFS 477
             W            ++ +AS   +    +W         ++++++ E+     W   +S
Sbjct: 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263

Query: 478 RTEPSMLVSGSDDCKV 493
            +  ++L     D KV
Sbjct: 264 LSG-NVLALSGGDNKV 278

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 16/135 (11%)

Query: 374 HSANIVSSIEF--DRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEM----PT 424
           HS   V+S+++       L   A    ++ V +F         +   H   V      P 
Sbjct: 98  HS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156

Query: 425 RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFS--R 478
             +            +  +   + +V +W   +       E     H      V +S   
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216

Query: 479 TEPSMLVSGSDDCKV 493
              S L S S D   
Sbjct: 217 LLRSYLASVSQDRTC 231

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEM----PTR 425
           H    + S+++++D     +  V     +++  S       E  +     +         
Sbjct: 148 HR-APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206

Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SM 483
           S    + W     ++      +G + V+ +T +    +   H      ++F+       +
Sbjct: 207 SLGVDVEWV--DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN---DTNKL 261

Query: 484 LVSGSDD 490
           L+S SDD
Sbjct: 262 LLSASDD 268

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 435 KFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
           +F+     + S+  +G + +W      S   +  H +   S  +       ++S S D  
Sbjct: 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD--DKVISCSMDGS 311

Query: 493 V 493
           V
Sbjct: 312 V 312

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 31/130 (23%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H    +S +EF+  ++L  +A     ++++                      +  +C   
Sbjct: 246 HH-GPISVLEFNDTNKLLLSASDDGTLRIWH-----------------GGNGNSQNCFYG 287

Query: 434 NK-------FSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SM 483
           +        +  + ++ S   +G V +W +     +          ++   S        
Sbjct: 288 HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS---QDGQK 344

Query: 484 LVSGSDDCKV 493
                 D +V
Sbjct: 345 YAVAFMDGQV 354

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
            S++  + A +  +G V V+D+    S       +     +        S   S  +D 
Sbjct: 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
              NIVSS     D+ + A    +   ++        E        +    R   +  + 
Sbjct: 44  KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103

Query: 434 NK----------FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481
           +           +S +   I +    G + +W+ T    +     H     SV ++    
Sbjct: 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGAL-LNVLNFHRAPIVSVKWN---K 159

Query: 482 --SMLVSGSDDCKV 493
             + ++S   +   
Sbjct: 160 DGTHIISMDVENVT 173

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 51.3 bits (124), Expect = 3e-07
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 32/131 (24%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H+   + S+ F  D QL  TA     IK++D                     +    LS 
Sbjct: 205 HA-MPIRSLTFSPDSQLLVTASDDGYIKIYDVQ-----------------HANLAGTLSG 246

Query: 434 NK-------FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--S 482
           +        F  +     SS  +  V VWDV T+  V  + +H+ + W V ++      S
Sbjct: 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN---GNGS 303

Query: 483 MLVSGSDDCKV 493
            +VS  DD ++
Sbjct: 304 KIVSVGDDQEI 314

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 32/131 (24%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
                  ++ F  D Q  AT     ++ +F                    +  K   L  
Sbjct: 121 GP-VDAWTLAFSPDSQYLATGTHVGKVNIFGVE-----------------SGKKEYSLDT 162

Query: 434 NK-------FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--S 482
                    +S +   +AS   +GI+ ++D+ T + +   E H     S+ FS   P   
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS---PDSQ 219

Query: 483 MLVSGSDDCKV 493
           +LV+ SDD  +
Sbjct: 220 LLVTASDDGYI 230

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 48.2 bits (116), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDC 491
            S      ASS  +  + +WD+   + +   +     AW++ FS   P    L +G+   
Sbjct: 88  ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS---PDSQYLATGTHVG 144

Query: 492 KV 493
           KV
Sbjct: 145 KV 146

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNE----PADVHCPVVEMPTRSK 427
           H    V S++      + A++ +   I+++D  +   +      P D    +        
Sbjct: 79  HQ-LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LA------- 129

Query: 428 LSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SM 483
                   FS +   +A+  + G V ++ V + +     +   K   S+ +S   P    
Sbjct: 130 --------FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS---PDGKY 178

Query: 484 LVSGSDDCKV 493
           L SG+ D  +
Sbjct: 179 LASGAIDGII 188

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 441 IASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS---RTEPSMLVSGSDDCKV 493
              S  E +             + + H+   WSV +    +     +V+GS D  V
Sbjct: 5   HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLV 60

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
             + +   + +V VW    ++  +++  E H+    SVD S       +  S S D  +
Sbjct: 49  ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS---HTLPIAASSSLDAHI 104

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H+   V+ + F  D     T G   R+++++ ++   E   V+   V   ++  L     
Sbjct: 244 HN-GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN--GENTLVNYGKVCNNSKKGLKFTVS 300

Query: 434 NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
              S        Y   + V+ V + + +   + H K      F       L SGS DC +
Sbjct: 301 CGCSS-EFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNI 358

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 428 LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
           LS          R+  ++      V  +   +       H     ++D    E   ++SG
Sbjct: 5   LSARQTGLEDPLRLRRAE--STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSG 62

Query: 488 SDDCKV 493
             D  +
Sbjct: 63  GSDGVI 68

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 352 LTTFTRYSRLRVIAELRHGDIFHSANIVSSIEF-DRDDQLFATAGVSRRIKVFDFASVVN 410
            + +T  +   +  +       H    V ++++   D  +F ++   + +KV+D  +   
Sbjct: 79  QSYYTCKAVCSIGRDHPDV---HR-YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--L 132

Query: 411 EPADV--HCPVVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEE 466
           + ADV              +     +  S     +A       V + D+ +       + 
Sbjct: 133 QTADVFNF--------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184

Query: 467 HEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           H +   +V +S     +L + S D +V
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRV 211

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 374 HSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL---- 428
           H    +++++ +  + +   + G    I ++D  +  +  +   C  V    R       
Sbjct: 42  HG-GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHR 99

Query: 429 ---SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR--TEPSM 483
                + W         SS ++  + VWD  T Q+       E+  +S   S   T+  +
Sbjct: 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV-FNFEETVYSHHMSPVSTKHCL 158

Query: 484 LVSGSDDCKV 493
           +  G+   KV
Sbjct: 159 VAVGTRGPKV 168

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 52  DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSD------CP---CCGHYLTNNQL 101
              CPI  + +K+      CGH++    I+  + ++        CP   C    +  + L
Sbjct: 7   GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66

Query: 102 YPNFLLDKLLKKTSARQ 118
             +  L + ++  + ++
Sbjct: 67  IQDEALRRAIENHNKKR 83

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 21/129 (16%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLS 432
           H   IV+ +++        T    R   V++              +V     R+      
Sbjct: 54  HD-KIVTCVDWAPKSNRIVTCSQDRNAYVYE----KRPDGTWKQTLVLLRLNRAATFV-- 106

Query: 433 WNKFS--KNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEP--SML 484
             ++S  +++ A      +++V     +     S            S+D+    P   +L
Sbjct: 107 --RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH---PNNVLL 161

Query: 485 VSGSDDCKV 493
            +G  D K 
Sbjct: 162 AAGCADRKA 170

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 16/131 (12%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFD----------FASVVNEPADVHCPVVEMPTRSKL 428
           + S+++  ++ L A     R+  V             ASV       +    E P+   +
Sbjct: 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEPSML 484
             + ++  S N +A + ++  VT+   +  +    +++  +  +    S+ ++  E +++
Sbjct: 209 HAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA-NESAIV 266

Query: 485 VSGSDDCKVLY 495
            +G +   +L 
Sbjct: 267 AAGYNYSPILL 277

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEP--SML 484
              ++N   +    ++     V +++      +    + +H+K    VD++   P  + +
Sbjct: 15  YEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA---PKSNRI 70

Query: 485 VSGSDDCKV 493
           V+ S D   
Sbjct: 71  VTCSQDRNA 79

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEMPTRSKLSCLSWNK 435
                F+     F T   + ++++++      + A     H  +V        +C+ W  
Sbjct: 14  SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIV--------TCVDWAP 65

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQS---VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
            S NRI +   +    V++     +    +      + A  V +S  E      GS    
Sbjct: 66  KS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARV 123

Query: 493 V 493
           +
Sbjct: 124 I 124

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 27/139 (19%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
            +    + + +  ++  FA    +R I V  F     E        ++ P RS +  L  
Sbjct: 99  LN-RAATFVRWSPNEDKFAVGSGARVISVCYFEQ---ENDWWVSKHLKRPLRSTILSLD- 153

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQ-----------------SVMEYEEHEKRAWSV 474
             +  N   +A+   +    V     +                  +V           +V
Sbjct: 154 --WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAV 211

Query: 475 DFSRTEPSMLVSGSDDCKV 493
            FS +  + L     D  V
Sbjct: 212 GFSPSG-NALAYAGHDSSV 229

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEMPTRSKLSC 430
           H  ++++ ++F        +      +KV+   +   +       H   V          
Sbjct: 117 HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGV--------WS 164

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
                   N I S   +  + VW+  T + +     H      +         +VSGS D
Sbjct: 165 SQ---MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRD 218

Query: 491 C 491
            
Sbjct: 219 A 219

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 428 LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
           ++CL    F  NRI S   +  + VW   T + +     H    WS        ++++SG
Sbjct: 122 ITCLQ---FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISG 175

Query: 488 SDDCKV 493
           S D  +
Sbjct: 176 STDRTL 181

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           F    + S   +  + VWDV T   +     H+     ++      ++LVSG+ D  V
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTV 341

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 24/126 (19%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEMPTRSKLS 429
           H  ++ S +E   +  +  +      +K++D  +       +  + H   V        +
Sbjct: 318 HQ-SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--------T 366

Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV-----MEYEEHEKRAWSVDFSRTEPSML 484
           CL    F+KN + +S  +G V +WD+ T + +     +E        W +  S T+  + 
Sbjct: 367 CLQ---FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVC 422

Query: 485 VSGSDD 490
             GS +
Sbjct: 423 AVGSRN 428

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +   R+ S  Y+ +V VWD  T+  +   + H  R +S+ F       +VSGS D  +
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSI 301

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
              N + S + +  V +WD+ T Q +       +H+     + F+    + +++ SDD  
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGT 383

Query: 493 V 493
           V
Sbjct: 384 V 384

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             + R+ S   +  + VWD+ T Q +     H      V +       +VSG+ D  V
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMV 261

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 3/130 (2%), Positives = 26/130 (20%), Gaps = 16/130 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT--RSKLSCL 431
           H+     + +            ++                     +    T    +   +
Sbjct: 107 HT-PGTFTNQLQTSFSEPRLLILTDPRTDHQPIK--ESALGNIPTIAFCDTDSPMRYVDI 163

Query: 432 SWNKFS---KNRIASSDYEGIVTVWDVTTQQSVMEYEE-----HEKRAWSVDFSRTEPSM 483
                    K + +      ++    +  + +++   +             + ++ +   
Sbjct: 164 G---IPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220

Query: 484 LVSGSDDCKV 493
             +       
Sbjct: 221 EAALVAPDYG 230

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 3/62 (4%), Positives = 11/62 (17%), Gaps = 7/62 (11%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDC 491
             ++    ++  Y     +       +      H    ++        S           
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ---TSFSEPRLLILTD 130

Query: 492 KV 493
             
Sbjct: 131 PR 132

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 0/136 (0%), Positives = 0/136 (0%), Gaps = 31/136 (22%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--------VVNEPADVHCPVVEMPTR 425
            + +  +                          +          + P     P       
Sbjct: 248 GT-DAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPTP----- 301

Query: 426 SKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSV----MEYEEHEKRAWSVDFSRT 479
              +                                                        
Sbjct: 302 ---NWGE-----                                                 353

Query: 480 EP--SMLVSGSDDCKV 493
                           
Sbjct: 354 -                368

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 0/61 (0%), Positives = 14/61 (22%), Gaps = 6/61 (9%)

Query: 436 FSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCK 492
                            ++ +   ++  + +   +   +++         +  +     +
Sbjct: 33  NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENP---QDIIVQSARPYGQR 89

Query: 493 V 493
            
Sbjct: 90  A 90

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 5/58 (8%), Positives = 9/58 (15%), Gaps = 6/58 (10%)

Query: 439 NRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
              A+        V +           E     A         P  +     +     
Sbjct: 219 EEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAI---PAQAGADWTAAPAPA 273

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 20/129 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV---H-CPVVEMPTRSKLS 429
           H+  ++     D   +  AT    + IK+F+     ++  D    H  PV          
Sbjct: 10  HN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV---------W 59

Query: 430 CLSW--NKFSKNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEP-SML 484
            + W   KF    +AS  Y+G V +W         +  +  H     SV ++  E   +L
Sbjct: 60  RVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 118

Query: 485 VSGSDDCKV 493
           +  S D KV
Sbjct: 119 LVASSDGKV 127

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 31/136 (22%)

Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCL--- 431
           +          ++ + F T G    +K++ + S             +  T    S L   
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-------------DAQTYVLESTLEGH 205

Query: 432 ---------SWNKFSKNRIASSDYEGIVTVWDVTT-----QQSVMEYEEHEKRAWSVDFS 477
                    S     ++ +AS   +    +W         ++++++ E+     W   +S
Sbjct: 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265

Query: 478 RTEPSMLVSGSDDCKV 493
            +  ++L     D KV
Sbjct: 266 LSG-NVLALSGGDNKV 280

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 16/135 (11%)

Query: 374 HSANIVSSIEF--DRDDQLFATAGVSRRIKVFDFASVVNEPADV---HCPVVEM----PT 424
           HS   V+S+++       L   A    ++ V +F         +   H   V      P 
Sbjct: 100 HS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158

Query: 425 RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFSRTE 480
             +            +  +   + +V +W   +       E     H      V +S T 
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218

Query: 481 P--SMLVSGSDDCKV 493
              S L S S D   
Sbjct: 219 LLRSYLASVSQDRTC 233

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 37  AAASTSEVGVSELDKDMLCPICMQIIKEAFLTAC-GHSFCYMCIITHLRNKSDCPCCGHY 95
            A    ++   ++  + L P+   I+K+  +      +     I  HL + S  P     
Sbjct: 876 KADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMP 935

Query: 96  LTNNQLYPNFLL 107
           L    + PN  L
Sbjct: 936 LKLEDVTPNEEL 947

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 68/452 (15%), Positives = 134/452 (29%), Gaps = 132/452 (29%)

Query: 72  HSFCYMCIITHLRN--KSDCPCCGHYLTNNQLYPNFLLDKL---LKKTSARQISKTASPL 126
           H + Y  I++   +    +  C              + D     L K     I  +   +
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDC------------KDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 127 ENFRQAL-----QQGCGVS--VKEIDS-----LMSLLSEKKR----KMEQEEAERNM--- 167
               +       +Q   V   V+E+       LMS +  ++R           +R+    
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 168 --QILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLR-MLG 224
             Q+   + +  R Q   +L++                     L   R   +V +  +LG
Sbjct: 122 DNQVFAKY-NVSRLQPYLKLRQA--------------------LLELRPAKNVLIDGVLG 160

Query: 225 DDSNTRKSWLSS--------IDKNSSGI--ITSSLNARGGSSAGSLQNKKGDGKAQANSH 274
               + K+W++           K    I  +         +    LQ        Q + +
Sbjct: 161 ----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPN 212

Query: 275 GHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKN 334
              R D                      +  + + +Q    + RR + ++P+      +N
Sbjct: 213 WTSRSDHS------------------SNIKLRIHSIQA---ELRRLLKSKPY------EN 245

Query: 335 --IIHREGYNAGLA---DFQS-VLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD 388
             ++     NA      +    +L T TR+   +V   L       SA   + I  D   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLT-TRFK--QVTDFL-------SAATTTHISLDHHS 295

Query: 389 QLFATAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE 447
               T    + +        ++  P D+  P  E+ T +        +  ++ +A+ D  
Sbjct: 296 MTL-TPDEVKSL----LLKYLDCRPQDL--P-REVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 448 GIVTVWDVTT--QQSVMEYEEHEKRAWSVDFS 477
             V    +TT  + S+   E  E R      S
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 53/368 (14%), Positives = 105/368 (28%), Gaps = 75/368 (20%)

Query: 1   MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
           +  V       A     K   T    Q TD  +A T    + +     L  D +  + ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 61  IIKEAFLT----ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116
            +              +   + II    +  D        T +  + +   DKL   T+ 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLA-----TWDN-WKHVNCDKL---TTI 358

Query: 117 RQIS-KTASPLENFRQALQQGCGV---SVK-EIDSLMSLLSEKKRKMEQEEAERNMQILL 171
            + S     P E +R+   +   V   S       L  +  +    + + +    +  L 
Sbjct: 359 IESSLNVLEPAE-YRKMFDR-LSVFPPSAHIPTILLSLIWFD----VIKSDVMVVVNKLH 412

Query: 172 DFLHCLRKQKVDELKEIQTDLH--YIKEDINAVERHR--IDLYRAR-------------D 214
            +   + KQ  +    I   ++     +  N    HR  +D Y                D
Sbjct: 413 KYS-LVEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 215 RYS--------VKLRMLGDDSNTRK-----SWLSSIDKNSSGII--TSSLNARGGSSAGS 259
           +Y           +      +  R       +L    K    I   +++ NA G      
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--K----IRHDSTAWNASGSILNTL 524

Query: 260 LQNKKGDGKAQANSHGHQR-----KDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECY 314
            Q K        N   ++R      D L   +   +      ++R     A   + +  +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIF 580

Query: 315 LQKRRQMA 322
            +  +Q+ 
Sbjct: 581 EEAHKQVQ 588

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPAD----VHC----PVVEMP 423
           H    V  +  ++D  L A+    + ++V+  A+     E  +    V C    P     
Sbjct: 233 HR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291

Query: 424 TRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481
           + S+ +     K  K    + S   +  + +WDV+T   +M    H+     V F     
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---S 348

Query: 482 --SMLVSGSDDCKV 493
               ++S +DD  +
Sbjct: 349 GGKFILSCADDKTL 362

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLS 432
           H+ + V  I FD   +L A+      IK++DF           H   V        S +S
Sbjct: 149 HT-DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--------SSVS 199

Query: 433 WNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
                   + I S+  +  + +W+V T   V  +  H +    V  ++   +++ S S+D
Sbjct: 200 ---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSND 255

Query: 491 CKV 493
             V
Sbjct: 256 QTV 258

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           F      I S   +  + VWD   ++ +     HE    S+DF +T P  +V+GS D  V
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTV 404

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
            + S+  +  + VWD  T       + H      + F        +L S S D  +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD---HSGKLLASCSADMTI 174

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 45  GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYP 103
           G  E  +   CPI ++++K+  + + G ++    I   L      CP     L +  L P
Sbjct: 1   GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60

Query: 104 NFLL 107
           N++L
Sbjct: 61  NYVL 64

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 27/134 (20%)

Query: 379 VSSIEFDRDD---QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK 435
                   D           V     ++ F    +E   +   +   PT      +    
Sbjct: 126 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--TLNWSPTLELQGTVESPM 183

Query: 436 ----------FSKN-RIASSDYEGIVTVWDVTTQQSVMEYEE------HEKRAWSVDFSR 478
                      S+   IA+    G V + +++T + +  +E       +     SV FS 
Sbjct: 184 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS- 242

Query: 479 TEP--SMLVSGSDD 490
             P  S+L    D 
Sbjct: 243 --PQGSLLAIAHDS 254

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 39/142 (27%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLSWNK 435
            +V++  F  D   +         KV      +++     H              L W  
Sbjct: 82  CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH----------SFWALKWG- 130

Query: 436 FSKN-----RIASSDYEGIVTVWDVTT------------------QQSVMEYEEHEKRAW 472
            S +     R+ ++D +G   +W                      Q +V       + A 
Sbjct: 131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 190

Query: 473 SVDFSRTEP-SMLVSGSDDCKV 493
           SVD S      ++ +G ++  V
Sbjct: 191 SVDIS---ERGLIATGFNNGTV 209

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 23/128 (17%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCL 431
           H+   V S+ F  D++   +    + IK+++           + H   V        SC+
Sbjct: 127 HT-KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV--------SCV 177

Query: 432 SWNKFS----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLV 485
               FS       I S  ++ +V VW++   +    +  H     +V  S   P  S+  
Sbjct: 178 R---FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS---PDGSLCA 231

Query: 486 SGSDDCKV 493
           SG  D + 
Sbjct: 232 SGGKDGQA 239

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
              S  ++G + +WD+TT  +   +  H K   SV FS        +VSGS D  +
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS---SDNRQIVSGSRDKTI 152

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +  +S    G   ++  +     M      + H      +  +   P M++S S D  +
Sbjct: 5   HHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEE-----HEKRAWSVDFSRTEP--SMLVSGSDDC 491
           + I S+  +  + +W +T  ++     +     H      V  S         +SGS D 
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS---SDGQFALSGSWDG 108

Query: 492 KV 493
            +
Sbjct: 109 TL 110

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 20/134 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H  + V S+ F RD Q   +  + R +K+++  +     A+         + +       
Sbjct: 255 HK-DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-----ANNKSDSKTPNSGTCEVTYIG 308

Query: 434 NK-------FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--- 481
           +K        ++N   I S   +  V  WD  +   ++  + H     SV  +       
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368

Query: 482 --SMLVSGSDDCKV 493
             ++  +GS DCK 
Sbjct: 369 EYNVFATGSGDCKA 382

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 21/134 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVS-RRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSC 430
           H+ ++V  ++F  D +  AT     +  +V+  +   +V   +D      + P     S 
Sbjct: 63  HT-SVVCCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSD-DSAANKDPENLNTSS 118

Query: 431 LSWNK-------FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481
              +        FS +   +A+   + ++ +WD+  ++ VM  + HE+  +S+D+    P
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF---P 175

Query: 482 --SMLVSGSDDCKV 493
               LVSGS D  V
Sbjct: 176 SGDKLVSGSGDRTV 189

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 40/147 (27%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT----RSKLS 429
           HS   +     D D Q    A   +    +     +  PA      VE+       S + 
Sbjct: 14  HS-KPIPPFLLDLDSQSVPDALKKQTNDYYI----LYNPALPREIDVELHKSLDHTSVVC 68

Query: 430 CLSWNKFSKN--RIAS-SDYEGIVTVWDVTTQQSVMEYEEHEKRAW-------------- 472
           C+    FS +   +A+  +      V+ V+    V    +                    
Sbjct: 69  CVK---FSNDGEYLATGCN--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123

Query: 473 ----SVDFSRTEP--SMLVSGSDDCKV 493
               SV FS   P    L +G++D  +
Sbjct: 124 LYIRSVCFS---PDGKFLATGAEDRLI 147

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488
           +CL    F  N + +   + ++ V+D   ++ +++   H+   W++ ++     +LVSGS
Sbjct: 126 TCLQ---FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGS 180

Query: 489 DDCKV 493
            D  V
Sbjct: 181 TDRTV 185

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 25/139 (17%)

Query: 374 HSANIVS-SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLS--- 429
           H++ +    I   ++ +   T      + V+      + P         +   +      
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261

Query: 430 -------------CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476
                         +S      N + S  Y+  + VWDV   + +     H  R +S  +
Sbjct: 262 FVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318

Query: 477 SRTEP--SMLVSGSDDCKV 493
                     +S S D  +
Sbjct: 319 D---HERKRCISASMDTTI 334

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
           H+ + + S  +D + +   +A +   I+++D  +  +      H  +V          L 
Sbjct: 309 HT-DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV--------GLLR 359

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
               S   + S+  +G +  WD            H   +    F  ++ ++LVSGS++
Sbjct: 360 ---LSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTFYVSD-NILVSGSEN 412

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            R  S+  +  + +WD+   + +   + H      +  S      LVS + D  +
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSI 374

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
           H+  +V  +     D+   +A     I+ +D      + +  H  +        ++    
Sbjct: 351 HT-ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS------AITTFY- 400

Query: 434 NKFSKNRIAS-SDYEGIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDD 490
              S N + S S+      ++++ + + V     +   + WSV+F       LV+  + 
Sbjct: 401 --VSDNILVSGSE--NQFNIYNLRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEK 452

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 53  MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDC-PCCGHYLTNNQLYPNFLL 107
           +   I  ++++E  +T  G ++    I  HL+      P     LT  QL PN  +
Sbjct: 209 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 18/123 (14%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV-----HCPVVEMPTRSKLSCLSW 433
            ++I    DD     A     +   D  S+  E         H         S L+ +  
Sbjct: 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--------SMLTDVHL 203

Query: 434 NKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGSDD 490
            K S     I +SD +  + +        V ++   H+    S+     +  +L+S   D
Sbjct: 204 IKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGD 261

Query: 491 CKV 493
            K+
Sbjct: 262 DKI 264

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 12/127 (9%)

Query: 374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS 432
             +  + ++    D+  L A A   + + VFD   V     +V           + + +S
Sbjct: 101 IYSY-IRNLRLTSDESRLIACADSDKSLLVFD---VDKTSKNVLKLRKRFCFSKRPNAIS 156

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFSR--TEPSMLVS 486
             +     +  +D  G V   D+ +       +E    H      V   +       +++
Sbjct: 157 IAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215

Query: 487 GSDDCKV 493
              D  +
Sbjct: 216 SDRDEHI 222

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 368 RHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSK 427
           ++G    S+    +  FD    L A A V+  + ++    V          V+++  RS 
Sbjct: 13  KYG---MSSK-PIAAAFDFTQNLLAIATVTGEVHIYGQQQV--------EVVIKLEDRSA 60

Query: 428 LSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486
           +  +    F K   +   + +  V V  + +Q+ +        +  S+D   +    ++ 
Sbjct: 61  IKEMR---FVKGIYLVVINAKDTVYVLSLYSQKVLTTV-FVPGKITSIDTDASL-DWMLI 115

Query: 487 GSDDCKV 493
           G  +  +
Sbjct: 116 GLQNGSM 122

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 55 CPICMQIIKE----AFLTACGHSFCYMCIITHLRNKSDCPCC 92
          CPIC++ I      A +  CGH     C    L+    CP C
Sbjct: 8  CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 9/123 (7%)

Query: 379 VSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPT----RSKLSC 430
           +  +    D+   +   +S      I  FD  +  NE      P             +  
Sbjct: 95  IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVID 154

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
           + WN    + +A    +G + V  VT    V           SV +S      L  G  +
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQN 213

Query: 491 CKV 493
             V
Sbjct: 214 GTV 216

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           F    I S+  +  + VW+ +T + V     H++    + +      ++VSGS D  +
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTI 318

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +    + S   +  + +WD+     +   E HE+    + F       +VSG+ D K+
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKI 358

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
            ++  V  +++D  DQ   +      IK++D  +         H   V         CL 
Sbjct: 131 ETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--------LCLQ 180

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491
              + +  I +   +  V VWDV T + +     H +    + F+     M+V+ S D 
Sbjct: 181 ---YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDR 233

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489
           CL    +   +I S   +  + +WD  T +       H      + +      ++++GS 
Sbjct: 138 CLQ---YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSS 191

Query: 490 DCKV 493
           D  V
Sbjct: 192 DSTV 195

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT--RSKLSCL 431
           H   +V  I FD  ++   +     +IKV+D  + ++  A      +        ++  L
Sbjct: 335 HE-ELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391

Query: 432 SWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
               F + +I SS ++  + +WD     +                SR
Sbjct: 392 Q---FDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYISR 435

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 27/130 (20%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEMPTRSKLSCLS 432
           H    ++ +++    +L  +      I+++D          + H  +V         C+ 
Sbjct: 295 HK-RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--------RCIR 343

Query: 433 WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---------EEHEKRAWSVDFSRTEPSM 483
              F   RI S  Y+G + VWD+                   EH  R + + F       
Sbjct: 344 ---FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---Q 397

Query: 484 LVSGSDDCKV 493
           +VS S D  +
Sbjct: 398 IVSSSHDDTI 407

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
             +A+   +G  + WD   +  +   E+ ++   +  F+    ++    S  
Sbjct: 286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NIFAYASSY 336

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW--NK 435
            ++  F      +F +A       + D    V             P  S + CLS+    
Sbjct: 5   GTTSGFGTSGTSMFGSATTDNHNPMKDIE--VTSS----------PDDS-IGCLSFSPPT 51

Query: 436 FSKNRIASSDYEGIVTVWDV-TTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
              N + +  +   V  W+V  + Q++ +  + H      V +S  + S + + S D   
Sbjct: 52  LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA 110

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           V  + +  D     TA   +  K++D +S        H   V          + W K   
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV--------KTIHWIKAPN 140

Query: 439 -NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
            + + +  ++  +  WD  +   +M  +  E+   +         M V  + +  +
Sbjct: 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY----PMAVVATAERGL 192

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 52  DMLCPICMQII-----KEAFLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYPNF 105
           D  CP C          +  +  CGH+ C  C+     R   +CP CG  L  +      
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62

Query: 106 LLD 108
             D
Sbjct: 63  FED 65

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 18/128 (14%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW 433
            S    SS    +D  L A       + V++ +S      D       +   +K+  +  
Sbjct: 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-----PDQASSRFPVDEEAKIKEVK- 221

Query: 434 NKFSKNR---IASSDYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTEPSMLV 485
             F+ N    +   D    V  +D+      + Y      E +    + D   +  +M+ 
Sbjct: 222 --FADNGYWMVVECD--QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277

Query: 486 SGSDDCKV 493
             ++   +
Sbjct: 278 YSNESNSL 285

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
            I S+  + +V  W++   Q   ++  H     ++  S   P  +++ S   D ++
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEI 220

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
              S+ ++  + +WDV T ++   +  H+    SVD        SM++SGS D  +
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID---KKASMIISGSRDKTI 131

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 25/130 (19%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS----VVNEPADVHCPVVEMPTRSKLS 429
           H+   V S+ F  D++   +A   R IK+++        ++E  + H   V        S
Sbjct: 471 HT-KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV--------S 521

Query: 430 CLSWNKFS----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SM 483
           C+    FS    +  I S+ ++  V VW+++  +       H     +V  S   P  S+
Sbjct: 522 CVR---FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS---PDGSL 575

Query: 484 LVSGSDDCKV 493
             SG  D  V
Sbjct: 576 CASGGKDGVV 585

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 436 FSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDC 491
            S +     S  ++G + +WD+    S   +  H K   SV FS        +VS S D 
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS---LDNRQIVSASRDR 494

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 374 HSANIVSSIEFDRDDQLF--ATAGVSRRIKVFDFASVVNEPADVHCPVVEMP---TRSKL 428
           H    V S +FD+ + +F   +      ++V+ +     +          +P    R   
Sbjct: 196 HE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254

Query: 429 SCLSWNKFSKN-RIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSV----DFSRTEPS 482
           +      +  N  IAS   +G++ V++    +  V          + +           +
Sbjct: 255 NV----AWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310

Query: 483 MLVSGSDDCKV 493
           +L +G DD  V
Sbjct: 311 ILATGGDDGIV 321

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 436 FSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSD 489
           FS+  +A+   +  + +  V         V++   H+K   SV +    P  S+L +GS 
Sbjct: 22  FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR---PHTSLLAAGSF 78

Query: 490 DCKV 493
           D  V
Sbjct: 79  DSTV 82

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 32/135 (23%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP----------ADVHCPVVEMP 423
           H  N V  + +  D    AT    + + +++      E            DV   V+   
Sbjct: 106 HE-NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH-VI--- 160

Query: 424 TRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRT 479
                       +   +  +ASS Y+  V +W       + V     HE   WS DF +T
Sbjct: 161 ------------WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208

Query: 480 -EPSMLVSGSDDCKV 493
                L SGSDD  V
Sbjct: 209 EGVFRLCSGSDDSTV 223

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
              SS ++  + +WD+ T  +   +  H+   +SV FS   P    ++S   + ++
Sbjct: 90  FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS---PDNRQILSAGAEREI 142

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDD 490
            IA+   +  + +WD+          +       + F+   P    +  G+D 
Sbjct: 227 YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN---PKLQWVAVGTDQ 276

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 440 RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP--SMLVSGSDDCKV 493
             AS  ++G + VW+   Q     ++ HE     +  S   P    + +G  D K+
Sbjct: 186 YFASVGWDGRLKVWNTNFQI-RYTFKAHESNVNHLSIS---PNGKYIATGGKDKKL 237

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 12/64 (18%)

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEY-------EEHEKRAWSVDFSRTEP--SMLVSGSD 489
             + S   +  V +W +  ++    +         H      +  S         +S S 
Sbjct: 40  PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS---QENCFAISSSW 96

Query: 490 DCKV 493
           D  +
Sbjct: 97  DKTL 100

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 38 AASTSEVGVSELDKDMLCPICMQIIK---EAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           +S S      +   + CP+C +            C H F   CI+  L     CP C
Sbjct: 1  GSSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVC 58

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCC 92
             C  C    K+         C HSF   C+   ++  + CP C
Sbjct: 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 55 CPICMQIIKEAF-LTACGHSFCYMCIITHLR--NKSDCPCC 92
          C IC  ++ +      CG      C+  + +   +  CP C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC 58

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 21/144 (14%)

Query: 370 GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR---- 425
            D    A+I+S++EF+   +L AT     R+ +F         +          T     
Sbjct: 22  DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHE 81

Query: 426 ------------SKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYE---EHEK 469
                        K++ + W       +   S  +  + +W ++ +    E     E + 
Sbjct: 82  PEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDG 141

Query: 470 RAWSVDFSRTEPSMLVSGSDDCKV 493
           R        T   + V    D  V
Sbjct: 142 RYRDPTTVTTL-RVPVFRPMDLMV 164

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 38 AASTSEVGVSELDKDMLCPICMQIIKEAF-------LTACGHSFCYMCIITHLRNKSDCP 90
           +S S   V EL+   LC +C+    E F       +  C H+F   C+I  L  +  CP
Sbjct: 1  GSSGSSGKVKELNLHELCAVCL----EDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56

Query: 91 CC 92
           C
Sbjct: 57 LC 58

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 31  AAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGH-SFCYMCIITHLRNKSDC 89
            ++  +      E   ++   + L PI   ++ +  +      +     I  HL +    
Sbjct: 1   GSSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTD 60

Query: 90  PCCGHYLTNNQLYPNFLL 107
           P     LT +Q+ PN  L
Sbjct: 61  PFNRSPLTMDQIRPNTEL 78

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)

Query: 51 KDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNK 86
              C +C+          +  C   FC +C+  ++   
Sbjct: 4  GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 48 ELDKDMLCPICMQIIKEAFL--TACGHSF-CYMCIITHLRNKSDCPCC 92
           L+    C IC    K   +     GH   C+ C     +    CP C
Sbjct: 4  PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVC 51

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 23/63 (36%)

Query: 55 CPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNKS-----DCPC 91
          C ICM+ +  A                   LT C H+F  +C++    N +      CP 
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87

Query: 92 CGH 94
          C  
Sbjct: 88 CKT 90

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 48 ELDKDMLCPICMQIIK---EAFLTACGHSFCYMCIITHLRNKSDCPCC 92
           + ++M CPIC         A    C H F   C+   L+    CP C
Sbjct: 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 54  LCPICMQIIKEAFLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYPNFLL 107
              I  ++++E  +T  G ++    I  HL R     P     LT +QL PN  +
Sbjct: 108 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.84
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.84
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.83
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.83
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.82
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.82
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.82
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.81
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.81
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.81
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.81
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.8
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.8
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.8
2pm7_B	297	Protein transport protein SEC13, protein transport	99.8
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.8
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.79
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.79
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.79
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.79
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.78
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.78
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.78
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.78
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.77
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.77
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.77
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.77
2pm7_B	297	Protein transport protein SEC13, protein transport	99.77
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.77
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.76
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.75
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.75
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.75
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.74
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.74
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.74
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.74
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.74
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.74
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.73
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.73
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.73
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.72
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.72
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.71
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.71
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.7
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.7
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.7
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.7
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.69
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.69
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.69
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.69
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.68
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.68
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.68
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.68
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.68
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.68
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.67
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.67
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.67
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.67
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.67
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.66
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.66
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.66
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.66
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.66
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.66
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.66
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.66
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.65
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.65
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.65
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.65
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.65
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.65
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.65
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.65
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.65
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.64
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.64
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.64
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.64
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.64
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.64
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.64
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.64
3jro_A	753	Fusion protein of protein transport protein SEC13	99.63
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.63
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.63
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.63
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.62
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.62
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.62
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.62
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.62
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.62
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.62
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.62
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.62
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.61
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.61
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.61
3jro_A	753	Fusion protein of protein transport protein SEC13	99.61
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.6
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.6
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.6
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.6
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.6
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.59
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.59
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.59
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.59
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.59
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.59
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.59
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.59
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.58
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.57
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.56
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.56
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.56
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.55
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.55
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.55
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.55
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.54
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.53
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.53
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.53
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.53
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.52
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.52
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.52
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.5
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.5
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.5
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.49
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.49
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.48
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.47
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.47
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.46
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.46
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.43
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.43
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.42
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.4
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.4
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.37
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.36
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.36
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.35
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.35
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.34
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.33
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.33
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.32
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.3
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.29
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.28
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.22
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.19
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.19
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.19
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.16
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.14
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.12
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.11
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.07
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.05
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.02
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.0
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.0
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.97
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.96
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.91
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.81
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.76
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.76
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.64
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.6
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.57
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.56
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.46
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.43
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.37
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.37
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	98.32
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.3
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.29
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.24
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.21
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.17
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.14
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.1
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.05
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.02
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.0
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.97
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.94
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.93
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.9
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.54
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.35
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.27
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.13
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.99
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.93
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.84
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.83
3nw0_A	238	Non-structural maintenance of chromosomes element	96.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.53
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.15
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.09
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	94.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.69
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	94.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.68
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.41
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	94.19
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	93.85
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.59
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	92.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	92.31
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	92.3
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	92.07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.96
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	91.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	91.51
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.33
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	91.31
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.98
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	90.65
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	90.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	89.59
3kya_A	496	Putative phosphatase; structural genomics, joint c	89.43
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	89.2
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.16
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	88.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	88.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.42
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	87.85
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	87.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.13
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	87.09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	87.07
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	86.98
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	86.96
4a2l_A	795	BT_4663, two-component system sensor histidine kin	86.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	86.77
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	86.57
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	86.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	86.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	86.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	86.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	85.15
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	85.08
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	84.9
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.51
2fiy_A	309	Protein FDHE homolog; FDHE protein, structural gen	83.09
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	83.07
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	82.75
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	82.53
1weu_A	91	Inhibitor of growth family, member 4; structural g	82.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.52
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	82.02
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	81.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	80.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	80.16

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.85  E-value=8.4e-21  Score=183.95  Aligned_cols=144  Identities=22%  Similarity=0.283  Sum_probs=126.6

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+++|++.   ....+..+.     +|...|++++|+|++.+|++|+.|++|++||++.+      
T Consensus       173 spdg~~lasg~~dg~i~iwd~~---~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------  238 (321)
T 3ow8_A          173 SPDGKYLASGAIDGIINIFDIA---TGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------  238 (321)
T ss_dssp             CTTSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------
T ss_pred             CCCCCEEEEEcCCCeEEEEECC---CCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------
Confidence            3456678899999999999984   234455555     89999999999999999999999999999999876      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       .......+|...|.+++|+|+ +.+|++|+.||+|+|||+.++.++..+.+|...|++++|+| ++.+|++++.|++|+
T Consensus       239 -~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~  315 (321)
T 3ow8_A          239 -NLAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIH  315 (321)
T ss_dssp             -CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEE
T ss_pred             -ceeEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence             222334468889999999999 89999999999999999999999999999999999999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       316 v  316 (321)
T 3ow8_A          316 I  316 (321)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=183.85  Aligned_cols=144  Identities=18%  Similarity=0.263  Sum_probs=121.1

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ..++..+++|+.|+++++|++.   ....+..+.     +|.+.|++++|+|++. +|++++.|++|++||++++     
T Consensus       136 spdg~~l~sgs~d~~i~iwd~~---~~~~~~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-----  202 (344)
T 4gqb_B          136 LSSGTQAVSGSKDICIKVWDLA---QQVVLSSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-----  202 (344)
T ss_dssp             CTTSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-----
T ss_pred             CCCCCEEEEEeCCCeEEEEECC---CCcEEEEEc-----CcCCceEEEEecCCCCCceeeecccccccccccccc-----
Confidence            4567778999999999999984   335566665     8999999999999874 7899999999999999986     


Q ss_pred             CcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC-CeEEEeeC
Q 048199          414 DVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP-SMLVSGSD  489 (495)
Q Consensus       414 ~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g-~~l~s~s~  489 (495)
                         .+...+   .+...+.+++|+|+++.+|++|+.||+|+|||+++++++.++.+|...|++++|+| ++ .+|+|||.
T Consensus       203 ---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~  278 (344)
T 4gqb_B          203 ---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSE  278 (344)
T ss_dssp             ---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEET
T ss_pred             ---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeC
Confidence               233322   34557899999998788999999999999999999999999999999999999999 76 68999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      |++|+|
T Consensus       279 D~~i~v  284 (344)
T 4gqb_B          279 DCSLAV  284 (344)
T ss_dssp             TSCEEE
T ss_pred             CCeEEE
Confidence            999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.84  E-value=2.5e-20  Score=182.12  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=122.9

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+++++|++..   ...+..+.     +|...|.+++|+|++++|++|+.|++|++||++.+       
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~---~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-------  258 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVRE---GMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-------  258 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT---CSEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred             CCCCEEEEEeCCCcEEEEECCC---CeeEEEEc-----CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------
Confidence            4556688999999999999853   23344454     89999999999999999999999999999999876       


Q ss_pred             CCCeeecCC---CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          416 HCPVVEMPT---RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       416 ~~~~~~~~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                       ..+..+.+   ...|.+++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|++++|+| +|.+|+|||.|++
T Consensus       259 -~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~  335 (340)
T 1got_B          259 -QELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSF  335 (340)
T ss_dssp             -EEEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSC
T ss_pred             -cEEEEEccCCcccceEEEEECCC-CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCcc
Confidence             22333333   347999999999 99999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |+|
T Consensus       336 i~i  338 (340)
T 1got_B          336 LKI  338 (340)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.83  E-value=3.3e-20  Score=178.29  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=124.9

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .+++..+++|+.|+++++|++.   ....+..+.     +|...|.++.|+|++++|++|+.|++|++||+.++      
T Consensus        22 sp~~~~l~s~~~dg~v~lWd~~---~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~------   87 (304)
T 2ynn_A           22 HPTEPWVLTTLYSGRVELWNYE---TQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------   87 (304)
T ss_dssp             CSSSSEEEEEETTSEEEEEETT---TTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred             CCCCCEEEEEcCCCcEEEEECC---CCceeEEee-----ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC------
Confidence            3566778899999999999984   334455555     78899999999999999999999999999999987      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       .......+|...|++++|+|+ +.+|++|+.||+|++||++++ .....+.+|...|++++|+|.++.+|++|+.|++|
T Consensus        88 -~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           88 -EKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             -cEEEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence             223334478899999999999 899999999999999999887 45577899999999999999667899999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       166 ~i  167 (304)
T 2ynn_A          166 KV  167 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.83  E-value=6.5e-20  Score=179.42  Aligned_cols=152  Identities=13%  Similarity=0.155  Sum_probs=122.0

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..+.....+++|+.|++|+||++.............    .+|.+.|++++|+|++++|++|+.|++|++||+.++    
T Consensus        88 ~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----  159 (344)
T 4gqb_B           88 LTWVGERGILVASDSGAVELWELDENETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----  159 (344)
T ss_dssp             EEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred             EEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc----cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----
Confidence            344445668899999999999985433222222211    289999999999999999999999999999999987    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                         .......+|.+.|++++|+|++..+|++|+.||+|+|||+++++.+..+.  .|...+.+++|+|.++.+|++|+.|
T Consensus       160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence               22233446889999999999956789999999999999999999888775  4566799999999667889999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      |+|+|
T Consensus       237 g~v~~  241 (344)
T 4gqb_B          237 GTVSL  241 (344)
T ss_dssp             SEEEE
T ss_pred             CcEEE
Confidence            99975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.82  E-value=4.6e-20  Score=185.09  Aligned_cols=144  Identities=19%  Similarity=0.242  Sum_probs=125.2

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|++++||++..   ...+..+.     +|.+.|++++|+|++++|++|+.|++|++||+.+.      
T Consensus       117 ~p~~~~l~s~s~Dg~i~vwd~~~---~~~~~~l~-----~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~------  182 (410)
T 1vyh_C          117 HPVFSVMVSASEDATIKVWDYET---GDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF------  182 (410)
T ss_dssp             CSSSSEEEEEESSSCEEEEETTT---CCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS------
T ss_pred             cCCCCEEEEEeCCCeEEEEECCC---CcEEEEEe-----ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------
Confidence            34566789999999999999853   22344444     89999999999999999999999999999999875      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       .......+|...|++++|+|+ +.+|++|+.|++|++||++++.++.++.+|...|.++.|++ ++.+|++|+.|++|+
T Consensus       183 -~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          183 -ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVR  259 (410)
T ss_dssp             -CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -ceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEE
Confidence             122223368889999999999 89999999999999999999999999999999999999999 999999999999997


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      +
T Consensus       260 v  260 (410)
T 1vyh_C          260 V  260 (410)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-19  Score=176.77  Aligned_cols=151  Identities=13%  Similarity=0.211  Sum_probs=114.6

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+++|+.|+++++|++.. .....+..+..   .+|...|++++|+|++++|++|+.|++|+|||+.............
T Consensus        25 ~~las~~~D~~i~lw~~~~-~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           25 GILATGSTDRKIKLVSVKY-DDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             TEEEEEESSSCEEEEECSS-SCCEEEEEECT---TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred             CEEEEEcCCCEEEEEEecC-CCeEEEEEEec---CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence            3788999999999999842 22333444422   1499999999999999999999999999999996531100000111


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ....+|...|++++|+|+ +.+|++|+.|++|+|||++.    ..++..+.+|...|++++|+| ++.+|+||+.|++|+
T Consensus       101 ~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~  178 (330)
T 2hes_X          101 AIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVR  178 (330)
T ss_dssp             EEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEE
T ss_pred             EEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEE
Confidence            223468889999999999 99999999999999999953    246778899999999999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       179 i  179 (330)
T 2hes_X          179 I  179 (330)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.82  E-value=1.4e-19  Score=177.89  Aligned_cols=140  Identities=16%  Similarity=0.192  Sum_probs=121.0

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+++|+.|+++++|++..   ...+..+.     +|...|.+++|+|++.+|++|+.|++|++||++..        .
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~---~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~--------~  273 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRS---GQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD--------R  273 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------E
T ss_pred             CCEEEEEeCCCeEEEEECCC---CcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------c
Confidence            45788999999999999843   23444454     79999999999999999999999999999999875        2


Q ss_pred             CeeecC---CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          418 PVVEMP---TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       418 ~~~~~~---~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+..+.   +...+.+++|+|+ +.+|++|+.|++|+|||+.++..+..+.+|...|++++|+| +|.+|+|||.|++|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~  351 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLR  351 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred             EEEEEcCCCcccceeEEEEeCC-CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEE
Confidence            222222   2346899999999 99999999999999999999999999999999999999999 999999999999998


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       352 v  352 (354)
T 2pbi_B          352 V  352 (354)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.81  E-value=3.4e-19  Score=171.15  Aligned_cols=147  Identities=16%  Similarity=0.252  Sum_probs=122.0

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ..++..+++|+.|+++++|++..  .......+.     +|...|.+++|+| ++.+|++|+.|++|++||+.....   
T Consensus       106 ~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~-----~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---  175 (304)
T 2ynn_A          106 HPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---  175 (304)
T ss_dssp             CSSSSEEEEEETTSCEEEEEGGG--TTEEEEEEC-----CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---
T ss_pred             cCCCCEEEEECCCCeEEEEECCC--Ccchhhhhc-----ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---
Confidence            34556788999999999999853  223333444     8999999999999 678999999999999999987511   


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                         .......+...+..+.|+|. ++.+|++|+.||+|+|||++++.++..+.+|...|.+++|+| ++.+|+||+.||+
T Consensus       176 ---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          176 ---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGT  251 (304)
T ss_dssp             ---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             ---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCe
Confidence               11222345678999999873 267999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |+|
T Consensus       252 i~i  254 (304)
T 2ynn_A          252 LKI  254 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=177.40  Aligned_cols=150  Identities=14%  Similarity=0.104  Sum_probs=122.4

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +..++..+++|+.|++++||++... .......+.    .+|...|++++|+|++++|++|+.|++|++||+....    
T Consensus        24 ~sp~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~----~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~----   94 (345)
T 3fm0_A           24 WNPAGTLLASCGGDRRIRIWGTEGD-SWICKSVLS----EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD----   94 (345)
T ss_dssp             ECTTSSCEEEEETTSCEEEEEEETT-EEEEEEEEC----SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCC-cceeeeeec----cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC----
Confidence            4456778899999999999997421 111112222    2799999999999999999999999999999988651    


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc---ceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ---SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                       ........+|...|++++|+|+ +.+|++|+.|++|++||+.++.   ++..+.+|...|.+++|+| ++.+|++|+.|
T Consensus        95 -~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d  171 (345)
T 3fm0_A           95 -FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYD  171 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETT
T ss_pred             -eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCC
Confidence             1112233468889999999999 9999999999999999998763   4677889999999999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      ++|+|
T Consensus       172 ~~i~~  176 (345)
T 3fm0_A          172 DTVKL  176 (345)
T ss_dssp             SCEEE
T ss_pred             CcEEE
Confidence            99975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=174.33  Aligned_cols=143  Identities=15%  Similarity=0.181  Sum_probs=124.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+.+|++..   ......+.     .|...|.+++|+|++++|++|+.|++|++||+.++      
T Consensus       131 spdg~~l~~g~~dg~v~i~~~~~---~~~~~~~~-----~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------  196 (321)
T 3ow8_A          131 SPDSQYLATGTHVGKVNIFGVES---GKKEYSLD-----TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------  196 (321)
T ss_dssp             CTTSSEEEEECTTSEEEEEETTT---CSEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred             CCCCCEEEEEcCCCcEEEEEcCC---CceeEEec-----CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------
Confidence            45567788899999999999853   23344444     67889999999999999999999999999999886      


Q ss_pred             cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                        ..+. ..+|...|++++|+|+ +.+|++|+.||+|+|||++++..+..+.+|...|.+++|+| ++.+|++|+.|++|
T Consensus       197 --~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v  272 (321)
T 3ow8_A          197 --KLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSV  272 (321)
T ss_dssp             --EEEEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             --cEEEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence              2233 3357888999999999 89999999999999999999999999999999999999999 99999999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       273 ~i  274 (321)
T 3ow8_A          273 KV  274 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.7e-19  Score=175.42  Aligned_cols=151  Identities=23%  Similarity=0.332  Sum_probs=117.6

Q ss_pred             cccccCcccchhhHHhhhhhhhccc----CceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYS----RLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      .+++..+++|+.|.+++||+.....    ....+..+.     +|.+.|++++|+|++++|++|+.|++|++||+.....
T Consensus        67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~  141 (330)
T 2hes_X           67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-----GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE  141 (330)
T ss_dssp             CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred             CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-----CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence            3456678899999999999974211    123344444     8999999999999999999999999999999954311


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC--cceeecccccCcEEEEEeecCC--CCeEEE
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTE--PSMLVS  486 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~--g~~l~s  486 (495)
                      ..   .......+|...|++++|+|+ +.+|++|+.|++|++||..++  .++..+.+|...|++++|+| +  +.+|+|
T Consensus       142 ~~---~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s  216 (330)
T 2hes_X          142 EY---ECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCS  216 (330)
T ss_dssp             CC---EEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEE
T ss_pred             Ce---EEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEE
Confidence            00   111223468889999999999 899999999999999999876  67889999999999999999 6  678999


Q ss_pred             eeCCCcEeC
Q 048199          487 GSDDCKVLY  495 (495)
Q Consensus       487 ~s~D~~v~l  495 (495)
                      |+.|++|+|
T Consensus       217 ~s~D~~v~i  225 (330)
T 2hes_X          217 GSDDSTVRV  225 (330)
T ss_dssp             EETTSCEEE
T ss_pred             EeCCCeEEE
Confidence            999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=176.83  Aligned_cols=149  Identities=19%  Similarity=0.283  Sum_probs=123.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|++++||++.. .....+..+.     +|.+.|.+++|+|++++|++|+.|++|++||+.....    
T Consensus        70 sp~g~~l~s~s~D~~v~iw~~~~-~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----  139 (345)
T 3fm0_A           70 SPCGNYLASASFDATTCIWKKNQ-DDFECVTTLE-----GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----  139 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECC-C-EEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----
T ss_pred             CCCCCEEEEEECCCcEEEEEccC-CCeEEEEEcc-----CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----
Confidence            34667789999999999999742 2333455555     8999999999999999999999999999999987510    


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .........|...|.+++|+|+ +.+|++|+.|++|++||.+++.  +...+.+|...|++++|+| +|.+|++|+.|++
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~  217 (345)
T 3fm0_A          140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRT  217 (345)
T ss_dssp             EEEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             eEEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCe
Confidence            0011223467889999999999 8999999999999999998764  5578999999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |+|
T Consensus       218 v~i  220 (345)
T 3fm0_A          218 VRI  220 (345)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.80  E-value=1.1e-19  Score=180.28  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=118.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+++++||+....  ..+..+.     +|.+.|++++|+|++.+|++|+.|++|++||++++.....-..
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITS--RAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTC--CCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             CCCEEEEEECCCeEEEEECCCCC--cceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            45678899999999999985221  2334444     8999999999999999999999999999999998611000000


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .......+...+++++|+|+ +.+|++|+.||.|++||+.++..+..+    .+|.+.|++++|+| +|.+|+|||.|++
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~  367 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKN  367 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSC
T ss_pred             cccccccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCC
Confidence            00000112234899999999 999999999999999999998887776    68999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |+|
T Consensus       368 i~i  370 (380)
T 3iz6_a          368 LKI  370 (380)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.80  E-value=4.8e-19  Score=171.35  Aligned_cols=144  Identities=13%  Similarity=0.161  Sum_probs=125.1

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+++++|++..   ...+..+.     +|.+.|.+++|+|++.+|++|+.|++|++||+...      
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------  139 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVAT---GETYQRFV-----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------  139 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------
T ss_pred             CCCCCEEEEEeCCCEEEEEECCC---CCeeEEEc-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------
Confidence            34567788999999999999842   34455555     89999999999999999999999999999999754      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCC-----CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKF-----SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~-----~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                        ......+|...+.++.|+|.     ++.+|++|+.|+.|++||++++.....+.+|...|++++|+| ++.+|++|+.
T Consensus       140 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~  216 (319)
T 3frx_A          140 --CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGK  216 (319)
T ss_dssp             --EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEET
T ss_pred             --eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeC
Confidence              33445578889999999985     245899999999999999999999999999999999999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      ||+|+|
T Consensus       217 dg~i~i  222 (319)
T 3frx_A          217 DGEIML  222 (319)
T ss_dssp             TCEEEE
T ss_pred             CCeEEE
Confidence            999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.80  E-value=2.5e-19  Score=179.67  Aligned_cols=143  Identities=18%  Similarity=0.244  Sum_probs=124.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--------------------CCEEEEEe
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--------------------DQLFATAG  395 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--------------------~~~l~s~s  395 (495)
                      .++..+++|+.|+++++|++..   ......+.     +|...|.+++|+|+                    +.+|++|+
T Consensus       244 ~~g~~l~s~s~D~~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          244 QDGTLIASCSNDQTVRVWVVAT---KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCC---CceeeEec-----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            3456688999999999999843   23344444     89999999999996                    67899999


Q ss_pred             CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEE
Q 048199          396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD  475 (495)
Q Consensus       396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~  475 (495)
                      .|++|++||+.++       .......+|...|++++|+|+ +.+|++|+.||+|++||+.++.++..+.+|...|++++
T Consensus       316 ~D~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~  387 (410)
T 1vyh_C          316 RDKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  387 (410)
T ss_dssp             TTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             CCCeEEEEECCCC-------ceEEEEECCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            9999999999986       223334478889999999999 89999999999999999999999999999999999999


Q ss_pred             eecCCCCeEEEeeCCCcEeC
Q 048199          476 FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+| ++.+|+|||.|++|+|
T Consensus       388 ~~~-~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          388 FHK-TAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             ECS-SSSCEEEEETTSEEEE
T ss_pred             EcC-CCCEEEEEeCCCcEEE
Confidence            999 9999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.80  E-value=5.9e-19  Score=168.87  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=125.4

Q ss_pred             CCCCccccccccc---cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCC
Q 048199          324 QPHTKQESDKNII---HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSR  398 (495)
Q Consensus       324 ~~~~~~~~~~~~~---~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~  398 (495)
                      ..|...+....+.   .+..+++|+.|++++||++.. .....+..+.     +|...|.+++|+|+  +.+|++++.|+
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~-----~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-SCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-CceEEEEEee-----cCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            3444444444432   256789999999999999852 2222333333     78999999999997  88999999999


Q ss_pred             cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC------------CCEEEEecCCCcEEEEeCCCCc----cee
Q 048199          399 RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS------------KNRIASSDYEGIVTVWDVTTQQ----SVM  462 (495)
Q Consensus       399 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~------------~~~l~sg~~dg~v~iwd~~~~~----~~~  462 (495)
                      +|++||++....     .......+|...|++++|+|+.            +.+|++|+.|++|+|||++++.    ...
T Consensus       124 ~v~~wd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~  198 (297)
T 2pm7_B          124 KVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (297)
T ss_dssp             EEEEEEBCSSSC-----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             cEEEEEecCCCc-----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence            999999987510     1123445788899999999972            4699999999999999998766    567


Q ss_pred             ecccccCcEEEEEeecCC---CCeEEEeeCCCcEeC
Q 048199          463 EYEEHEKRAWSVDFSRTE---PSMLVSGSDDCKVLY  495 (495)
Q Consensus       463 ~~~~h~~~v~~v~~~~~~---g~~l~s~s~D~~v~l  495 (495)
                      .+.+|...|++++|+| +   +.+|+|||.|++|+|
T Consensus       199 ~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          199 TLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             EECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEE
T ss_pred             EecCCCCceEEEEECC-CCCCceEEEEEECCCcEEE
Confidence            8899999999999999 7   489999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.80  E-value=8e-19  Score=171.34  Aligned_cols=148  Identities=18%  Similarity=0.226  Sum_probs=122.6

Q ss_pred             cccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199          331 SDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      ....+.+...+++|+.|+++++|++..   ...+..+.     +|.+.|.+++|+|++.+|++|+.|++|++||++++  
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--  216 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIET---GQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--  216 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCC---CcEEEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--
Confidence            333344455688899999999999842   34455555     89999999999999999999999999999999886  


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEee
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                           .......+|...|++++|+|+ +.+|++|+.||+|++||++++..+..+..  +...|.+++|+| +|.+|++|+
T Consensus       217 -----~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~  289 (340)
T 1got_B          217 -----MCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY  289 (340)
T ss_dssp             -----SEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred             -----eeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEEC
Confidence                 222233468889999999999 89999999999999999999887777653  335799999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|+.|+|
T Consensus       290 ~d~~i~v  296 (340)
T 1got_B          290 DDFNCNV  296 (340)
T ss_dssp             TTSEEEE
T ss_pred             CCCeEEE
Confidence            9999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.79  E-value=9.5e-19  Score=168.35  Aligned_cols=144  Identities=21%  Similarity=0.266  Sum_probs=124.9

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+++|+...   ......+.     +|...|.+++|+|++++|++++.|++|++||+.++      
T Consensus        32 s~~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------   97 (312)
T 4ery_A           32 SPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG------   97 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred             CCCCCEEEEeeCCCeEEEEeCCC---cccchhhc-----cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC------
Confidence            34566788999999999999742   23344444     79999999999999999999999999999999886      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       ........|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+.+|...|.+++|+| ++.+|++|+.|+.|+
T Consensus        98 -~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           98 -KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCR  174 (312)
T ss_dssp             -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -cEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEE
Confidence             222233468889999999999 89999999999999999999999999999999999999999 999999999999987


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      +
T Consensus       175 ~  175 (312)
T 4ery_A          175 I  175 (312)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.79  E-value=1e-18  Score=174.24  Aligned_cols=144  Identities=17%  Similarity=0.228  Sum_probs=124.2

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+++++|++..   ...+..+.     +|...|++++|+|++.+|++++.|++|++||+.++      
T Consensus       132 s~dg~~l~s~~~d~~i~iwd~~~---~~~~~~~~-----~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------  197 (393)
T 1erj_A          132 SPDGKFLATGAEDRLIRIWDIEN---RKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------  197 (393)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred             CCCCCEEEEEcCCCeEEEEECCC---CcEEEEEc-----cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------
Confidence            34567788999999999999842   34455555     89999999999999999999999999999999886      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-------ccccCcEEEEEeecCCCCeEEEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-------EEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-------~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                        .....+.+...+.+++|+|.++.+|++|+.||+|++||++++..+..+       .+|...|++++|+| +|.+|++|
T Consensus       198 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~  274 (393)
T 1erj_A          198 --QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSG  274 (393)
T ss_dssp             --EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             --eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEE
Confidence              334445567789999999944999999999999999999998887766       67999999999999 99999999


Q ss_pred             eCCCcEeC
Q 048199          488 SDDCKVLY  495 (495)
Q Consensus       488 s~D~~v~l  495 (495)
                      +.|++|+|
T Consensus       275 s~d~~v~~  282 (393)
T 1erj_A          275 SLDRSVKL  282 (393)
T ss_dssp             ETTSEEEE
T ss_pred             eCCCEEEE
Confidence            99999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.79  E-value=7.3e-19  Score=172.92  Aligned_cols=143  Identities=17%  Similarity=0.170  Sum_probs=117.0

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+++++.|+++++|++.....   +..+   .+..|...|.+++|+|+ +.+|++|+.|+.|++||+.++       ..
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~---~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-------~~  261 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKP---ATRI---DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-------DS  261 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSC---BCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-------GG
T ss_pred             ceeeeeccCCceEEEECCCCce---eeee---eeccccccccchhhhhcccceEEEeecccceeEEECCCC-------cE
Confidence            3577899999999999853221   1111   12257788999999996 568999999999999999987       23


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......|...|++++|+|+++.+|++|+.||+|+|||+++++.+..+ +|.+.|++|+|+|.++.+|+|||.||+|++
T Consensus       262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            33444688899999999995678999999999999999998887665 799999999999867899999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.9e-19  Score=185.55  Aligned_cols=148  Identities=12%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEE--EEccCC-CEEEEEeCCCcEEEEEcccc
Q 048199          332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSI--EFDRDD-QLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~p~~-~~l~s~s~d~~i~vwd~~~~  408 (495)
                      ...+.+...+++|+.|+++++|++...  ..+...+.     +|.+.|++|  .|+|++ .+|+|||.|++|+|||++++
T Consensus       271 sv~~s~~~~lasgs~DgtV~lWD~~~~--~~~~~~~~-----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          271 TFDFLSPTTVVCGFKNGFVAEFDLTDP--EVPSFYDQ-----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             EEEESSSSEEEEEETTSEEEEEETTBC--SSCSEEEE-----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred             EEEecCCCeEEEEeCCCEEEEEECCCC--CCceEEee-----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence            333334457899999999999998532  12233344     899999999  567887 89999999999999999886


Q ss_pred             ccCCCCcCCCeeecCCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          409 VNEPADVHCPVVEMPTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       409 ~~~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                             .......+|.  ..|++++|+|+ +..|++++.|++|++||++++.++.++.+|.+.|++|+|+| +|.+|+|
T Consensus       344 -------~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~S  414 (524)
T 2j04_B          344 -------ATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLA  414 (524)
T ss_dssp             -------HHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEE
T ss_pred             -------CcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEE
Confidence                   1111222232  34789999999 88999999999999999999999999999999999999999 9999999


Q ss_pred             eeCCCcEeC
Q 048199          487 GSDDCKVLY  495 (495)
Q Consensus       487 ~s~D~~v~l  495 (495)
                      ||.|++|+|
T Consensus       415 gs~Dgtv~l  423 (524)
T 2j04_B          415 GSADGSLII  423 (524)
T ss_dssp             EETTTEEEC
T ss_pred             EECCCEEEE
Confidence            999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.79  E-value=9.9e-19  Score=171.98  Aligned_cols=148  Identities=16%  Similarity=0.233  Sum_probs=123.4

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ..++..+++|+.|+++++|++.   ....+..+.     +|.+.|++++|+|++. +|++++.|++|++||++++..   
T Consensus       148 spdg~~l~sgs~dg~v~iwd~~---~~~~~~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---  216 (357)
T 4g56_B          148 FSDGTQAVSGGKDFSVKVWDLS---QKAVLKSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---  216 (357)
T ss_dssp             CSSSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---
T ss_pred             CCCCCEEEEEeCCCeEEEEECC---CCcEEEEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---
Confidence            4466778999999999999984   334555555     8999999999999875 889999999999999988611   


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                        ........+...+.+++|+|+++.+|++|+.|+.|++||++++..+..+.+|...|++++|+|.++.+|+||+.|++|
T Consensus       217 --~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          217 --ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             --BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             --eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence              111122345667999999999778999999999999999999999999999999999999999334689999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       295 ~i  296 (357)
T 4g56_B          295 AV  296 (357)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.78  E-value=1.6e-18  Score=183.01  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=118.0

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .+++|+.|+++++|+..   ....+..+.     +|.+.|++++|+|++++|++++.|++|++||+.++.....-.....
T Consensus       162 ~l~s~s~D~~v~lwd~~---~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~  233 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGP---PFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  233 (611)
T ss_dssp             EEEEEETTSCEEEEETT---TBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             EEEEEeCCCeEEEEECC---CCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence            48899999999999974   234455555     8999999999999999999999999999999987611000000001


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-------------------------------------
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-------------------------------------  462 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-------------------------------------  462 (495)
                      ...+|.+.|++++|+|+ +.+|++|+.|++|+|||+.++..+.                                     
T Consensus       234 ~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~  312 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  312 (611)
T ss_dssp             SSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence            11268889999999999 9999999999999999998775443                                     


Q ss_pred             ------ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          463 ------EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       463 ------~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                            .+.+|...|++++|+| +|.+|+|++.|++|++
T Consensus       313 ~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~  350 (611)
T 1nr0_A          313 LGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINS  350 (611)
T ss_dssp             TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             CCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEE
Confidence                  3457999999999999 9999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.78  E-value=1.7e-18  Score=167.45  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199          324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR  399 (495)
Q Consensus       324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~  399 (495)
                      .+|...+....+..  ...+++|+.|+++++|++.....  ..++..+.     +|...|.+++|+|++.+|++|+.|++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-----CCcccEEEEEECCCCCEEEEEeCCCE
Confidence            44555555444432  35689999999999999853222  12344444     89999999999999999999999999


Q ss_pred             EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC
Q 048199          400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT  479 (495)
Q Consensus       400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  479 (495)
                      |++||+.++       .......+|...|.+++|+|+ +.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|.
T Consensus        89 v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           89 LRLWDVATG-------ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EEEEETTTT-------EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred             EEEEECCCC-------CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence            999999987       222334578899999999999 8999999999999999996 6788899999999999999982


Q ss_pred             -----CCCeEEEeeCCCcEeC
Q 048199          480 -----EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 -----~g~~l~s~s~D~~v~l  495 (495)
                           ++.+|++++.|+.|++
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~  180 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKA  180 (319)
T ss_dssp             ------CCEEEEEETTSCEEE
T ss_pred             CCCCCCccEEEEEeCCCEEEE
Confidence                 2348999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.78  E-value=2.3e-18  Score=169.12  Aligned_cols=153  Identities=19%  Similarity=0.206  Sum_probs=123.6

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCc------------------------------eEEEEeec----------ccccc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRL------------------------------RVIAELRH----------GDIFH  374 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~------------------------------~~~~~~~~----------~~~~~  374 (495)
                      ..++..+++|+.|+++++|+.......                              ..++.+..          ..+.+
T Consensus        73 s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~  152 (354)
T 2pbi_B           73 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM  152 (354)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec
Confidence            345667889999999999986432111                              11222211          11236


Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iw  453 (495)
                      |.+.|.++.|+|++..|++++.|++|++||+.++       .......+|...|.+++|+|+ .+.+|++|+.||+|++|
T Consensus       153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            8999999999999999999999999999999887       222233468889999999885 26899999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++++.++..+.+|...|++++|+| ++.+|++|+.|++|+|
T Consensus       226 d~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~l  266 (354)
T 2pbi_B          226 DMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRL  266 (354)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             ECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEE
Confidence            9999999999999999999999999 9999999999999985

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.78  E-value=1.1e-19  Score=137.65  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ..+..+.+++.||||+++|+|||+++|||+||+.||.+|+....+||.||+++...+|.+|..+.++++.+..
T Consensus         6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~   78 (85)
T 2kr4_A            6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR   78 (85)
T ss_dssp             CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence            3446778899999999999999999999999999999999988899999999999999999999999998865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.77  E-value=2.5e-18  Score=168.07  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=118.9

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+++++|++..   ...+..+.     +|.+.|++++|+|++++|++++.|++|++||+.....     
T Consensus        86 ~~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-----  152 (343)
T 2xzm_R           86 QENCFAISSSWDKTLRLWDLRT---GTTYKRFV-----GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-----  152 (343)
T ss_dssp             SSTTEEEEEETTSEEEEEETTS---SCEEEEEE-----CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-----
T ss_pred             CCCCEEEEEcCCCcEEEEECCC---CcEEEEEc-----CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-----
Confidence            3456678999999999999853   23445555     8999999999999999999999999999999974300     


Q ss_pred             CCCeeecCCCCCeEEEEEcCCC---------CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFS---------KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~---------~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      ........|...|.+++|+|+.         +.+|++|+.||+|++|| ..+.....+.+|...|++++|+| +|.+|++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s  230 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP-NGKYIAT  230 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC-CCCEEEE
Confidence            0001112577789999999983         16899999999999999 45677788999999999999999 9999999


Q ss_pred             eeCCCcEeC
Q 048199          487 GSDDCKVLY  495 (495)
Q Consensus       487 ~s~D~~v~l  495 (495)
                      |+.|+.|+|
T Consensus       231 gs~dg~v~i  239 (343)
T 2xzm_R          231 GGKDKKLLI  239 (343)
T ss_dssp             EETTCEEEE
T ss_pred             EcCCCeEEE
Confidence            999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.77  E-value=1.4e-18  Score=171.53  Aligned_cols=149  Identities=11%  Similarity=0.035  Sum_probs=114.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC----cEEEEEcccccc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR----RIKVFDFASVVN  410 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~----~i~vwd~~~~~~  410 (495)
                      .+++..+++++++..+.+|...  .... ....    ..+|...|++++|+|++.++++++.|+    ++++|++.....
T Consensus       185 spdg~~l~s~s~~~~~~~~~~~--~~~~-~~~~----~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          185 STDGKVVAYITGSSLEVISTVT--GSCI-ARKT----DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             CTTSSEEEEECSSCEEEEETTT--CCEE-EEEC----CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             ccCCceEEeccceeEEEEEecc--Ccce-eeee----cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            3456667777766555444432  1111 1111    226889999999999999999999887    688888876511


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeC
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..   ........|...|++++|+|+ +.+|++|+.|++|+|||+.+++++..+ .+|...|++|+|+| ||.+|||||.
T Consensus       258 ~~---~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~  332 (365)
T 4h5i_A          258 SV---LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSA  332 (365)
T ss_dssp             EE---EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEET
T ss_pred             cc---eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeC
Confidence            00   011123467788999999999 999999999999999999999999875 79999999999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      |++|||
T Consensus       333 D~tvrv  338 (365)
T 4h5i_A          333 ANTIHI  338 (365)
T ss_dssp             TSEEEE
T ss_pred             CCeEEE
Confidence            999986

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.77  E-value=2.7e-19  Score=139.00  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=68.1

Q ss_pred             ccccCCCCccccccccchhhhccccCCC-CccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHh
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACG-HSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR  117 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CG-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~  117 (495)
                      .....+.+++.||||+++|+|||+++|| |+||+.||++||....+||+||+++...+|.+|..+.++++.+...
T Consensus        14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred             hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence            3446778899999999999999999999 9999999999999888999999999999999999999999988653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.77  E-value=1.1e-18  Score=166.16  Aligned_cols=143  Identities=14%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE------------EEEeCCCcEEEEEc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF------------ATAGVSRRIKVFDF  405 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l------------~s~s~d~~i~vwd~  405 (495)
                      +..+++|+.|++++||++.   ....+.++..+.  .|...|.+++|+|+|.++            ++|+.|++|++||.
T Consensus       193 ~~~LaSgS~D~TIkIWDl~---TGk~l~tL~g~~--~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLK---TGQLLKKMHIDD--SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             TTEEEEEETTSEEEEEETT---TCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             CceEEEecCCCcEEEEECC---CCcEEEEEcCCC--cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence            4668899999999999984   334566665211  134578888999999876            56889999999999


Q ss_pred             cccccCCCCcCCCee----ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEE-EEEeecCC
Q 048199          406 ASVVNEPADVHCPVV----EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW-SVDFSRTE  480 (495)
Q Consensus       406 ~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~  480 (495)
                      .++...      .+.    ..+|...+.+..++   +.++++|+.||+|+|||+.+++++.++.+|...+. +++|+| |
T Consensus       268 ~tgk~l------~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-D  337 (356)
T 2w18_A          268 KTTLSV------GVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-T  337 (356)
T ss_dssp             TTTEEE------EEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-S
T ss_pred             CCCEEE------EEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-C
Confidence            887110      011    12444445444554   67899999999999999999999999999987665 589999 9


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      |.+|+|||.|++|||
T Consensus       338 G~~LaSGS~D~TIkl  352 (356)
T 2w18_A          338 DSHLLAGQKDGNIFV  352 (356)
T ss_dssp             SSEEEEECTTSCEEE
T ss_pred             CCEEEEEECCCcEEE
Confidence            999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.77  E-value=4.4e-18  Score=162.77  Aligned_cols=149  Identities=11%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..++..+++|+.|++++||++.. .....+..+.     +|.+.|++++|+|  ++++|++|+.|++|+|||+.++.   
T Consensus        18 s~~g~~las~s~D~~v~iw~~~~-~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~---   88 (297)
T 2pm7_B           18 DYYGKRMATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR---   88 (297)
T ss_dssp             CTTSSEEEEEETTSCEEEEEBCS-SCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC---
T ss_pred             CCCCCEEEEEeCCCEEEEEecCC-CCcEEEEEEc-----cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc---
Confidence            35677889999999999999842 1223344554     8999999999986  48999999999999999998751   


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCC---------
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTE---------  480 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~---------  480 (495)
                        .........|...|++++|+|+. +.+|++|+.||+|++||++++.  ....+.+|...|++++|+| +         
T Consensus        89 --~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~  165 (297)
T 2pm7_B           89 --WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHN  165 (297)
T ss_dssp             --BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC--------
T ss_pred             --eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCC
Confidence              01122334588899999999973 6799999999999999998763  2466789999999999999 5         


Q ss_pred             ----CCeEEEeeCCCcEeC
Q 048199          481 ----PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 ----g~~l~s~s~D~~v~l  495 (495)
                          +.+|++|+.|++|+|
T Consensus       166 ~~~~~~~l~sgs~D~~v~l  184 (297)
T 2pm7_B          166 GTKESRKFVTGGADNLVKI  184 (297)
T ss_dssp             ----CCEEEEEETTSCEEE
T ss_pred             CCCCcceEEEEcCCCcEEE
Confidence                569999999999985

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.77  E-value=2.8e-19  Score=139.49  Aligned_cols=71  Identities=18%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ...+.+++.||||+++|+|||+++|||+||+.||.+||....+||.||.++...+|.+|..+.++++.+..
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~   93 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR   93 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999988899999999999999999999999998865

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.76  E-value=6.9e-18  Score=167.38  Aligned_cols=147  Identities=14%  Similarity=0.179  Sum_probs=119.6

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ...+++|+.|+++++|++..   ...+..+......+|...|.++.|++ ++++|++|+.|++|++||++...      .
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~------~  240 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS------R  240 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC------C
T ss_pred             CCEEEEECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC------c
Confidence            34588999999999999853   23333432222237999999999987 88999999999999999998531      1


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-------CcEEEEEeecCCCCeEEEeeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-------KRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-------~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ......+|.+.|++++|+|+ +.+|++|+.||+|+|||++++..+..+..+.       ..|++++|+| +|.+|++|+.
T Consensus       241 ~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~  318 (380)
T 3iz6_a          241 AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYS  318 (380)
T ss_dssp             CCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECT
T ss_pred             ceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEEC
Confidence            22334468889999999999 9999999999999999999999888876543       2489999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      ||.|+|
T Consensus       319 dg~i~v  324 (380)
T 3iz6_a          319 NGDCYV  324 (380)
T ss_dssp             TSCEEE
T ss_pred             CCCEEE
Confidence            999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.75  E-value=5.5e-18  Score=177.20  Aligned_cols=140  Identities=19%  Similarity=0.237  Sum_probs=121.4

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++++.|+++++|+..    ...+..+.     +|...|++++|+|++++|++++.|++|++||....       
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~~----~~~~~~~~-----~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~-------  499 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNRN----GQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------  499 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETT----SCEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-------
T ss_pred             CCCCEEEEEcCCCEEEEEECC----CCEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-------
Confidence            456678889999999999963    13344444     89999999999999999999999999999996542       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       ......+|...|++++|+|+ +.+|++|+.||.|+|||. +++.+..+.+|.+.|++++|+| ||.+|+|+|.|++|++
T Consensus       500 -~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~  575 (577)
T 2ymu_A          500 -LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKL  575 (577)
T ss_dssp             -EEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEE
T ss_pred             -EEEEEeCCCCCEEEEEEcCC-CCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEE
Confidence             23344578889999999999 899999999999999995 6899999999999999999999 9999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.75  E-value=2.4e-17  Score=160.95  Aligned_cols=121  Identities=14%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             ccCCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199          373 FHSANIVSSIEF-----DR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       373 ~~h~~~V~~l~~-----~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      .+|.+.|++++|     ++ ++.+|+||+.|++|++||+.................+|...|++++|+|+ +.+|++|+.
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~   96 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSW   96 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEET
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcC
Confidence            389999999999     76 89999999999999999997641110000111233478889999999999 899999999


Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++|++||++++..+..+.+|...|++++|+| ++.+|++|+.|++|+|
T Consensus        97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~  144 (343)
T 2xzm_R           97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKL  144 (343)
T ss_dssp             TSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEE
Confidence            99999999999999999999999999999999 9999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.75  E-value=6.9e-18  Score=168.48  Aligned_cols=149  Identities=15%  Similarity=0.257  Sum_probs=119.5

Q ss_pred             cccchhhHHhhhhhhhcccCc-eEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRL-RVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      +.+|+.|+.+.||++....+. ..+.     .+.+|.+.|++++|+| ++++|++|+.|++|+|||+..+..........
T Consensus        50 ~~~~~~~g~i~v~~~~~~~~~~~~~~-----~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  124 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTGRVDKNVP-----LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV  124 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCEECCTTCC-----CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred             EEEEcCCCEEEEEECccCCCCCCCCc-----eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence            345777889999998532211 1111     2338999999999999 99999999999999999998861111000122


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec--ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....+|...|++++|+|++..+|++|+.||.|+|||+.++..+..+  .+|...|++++|+| ++.+|++++.|+.|+|
T Consensus       125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRV  202 (402)
T ss_dssp             EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred             EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEE
Confidence            3344688999999999994479999999999999999999999999  88999999999999 9999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.74  E-value=3.8e-18  Score=172.44  Aligned_cols=143  Identities=13%  Similarity=0.139  Sum_probs=114.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ...+++|+.|++|+||++.... ...+..+     .+|.+.|++|+|+| ++++|+|||.|++|++||+.+.       .
T Consensus       132 ~~~lasGs~dg~i~lWd~~~~~-~~~~~~~-----~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-------~  198 (435)
T 4e54_B          132 PSTVAVGSKGGDIMLWNFGIKD-KPTFIKG-----IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-------I  198 (435)
T ss_dssp             TTCEEEEETTSCEEEECSSCCS-CCEEECC-----CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-------E
T ss_pred             CCEEEEEeCCCEEEEEECCCCC-ceeEEEc-----cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-------c
Confidence            4568899999999999985322 2222222     38999999999998 7889999999999999999875       1


Q ss_pred             CCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          417 CPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       417 ~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ......  .+...+.+++|+|+ +.+|++|+.||.|++||++ +..+..+.+|...|++++|+|.+..+|++|+.|++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             eeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence            111111  23345789999999 9999999999999999986 6778899999999999999993445889999999987


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      |
T Consensus       277 i  277 (435)
T 4e54_B          277 I  277 (435)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.4e-17  Score=162.61  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=114.4

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeecccc-----ccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDI-----FHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +++|+.|+++++|+...   ...++.+..+.+     .+|.+.|.+++|+|  ++++|++++.|++|++||+.++     
T Consensus        88 ~~s~s~D~~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----  159 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGN---QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-----  159 (343)
T ss_dssp             EEEECSTTEEEEEETTT---EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-----
T ss_pred             eEEecCCCeEEEEEccC---ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-----
Confidence            78899999999998742   122333333221     15778999999999  9999999999999999999986     


Q ss_pred             CcCCCeee--cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce-eeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199          414 DVHCPVVE--MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV-MEYEE-HEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       414 ~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~-~~~~~-h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                         .....  ..+...+++++|+|+ +.+|++|+.||.|+|||++++..+ ..+.+ |..+|++++|+| ++.+|+++++
T Consensus       160 ---~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~~  234 (343)
T 3lrv_A          160 ---SQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECD  234 (343)
T ss_dssp             ---CEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEES
T ss_pred             ---cEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEeC
Confidence               22222  234557999999999 999999999999999999999888 88888 999999999999 9999999995


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      | .|+|
T Consensus       235 ~-~v~i  239 (343)
T 3lrv_A          235 Q-TVVC  239 (343)
T ss_dssp             S-BEEE
T ss_pred             C-eEEE
Confidence            4 8874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.74  E-value=1.2e-17  Score=166.37  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=120.4

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC-
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA-  413 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~-  413 (495)
                      ++..+++|+.|+++++|+...   ...+..+..  ....+|...|++++|+|++.+|++|+.|++|++||+........ 
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             CCCEEEEEcCCCcEEEEECCC---CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            456788999999999999843   222333321  11237999999999999999999999999999999986411100 


Q ss_pred             ----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC-----CCCeE
Q 048199          414 ----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-----EPSML  484 (495)
Q Consensus       414 ----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-----~g~~l  484 (495)
                          .........+|...|.+++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|.+++|++.     ++.+|
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l  373 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  373 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cCCCCCcceEEEecccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence                01122334578889999999999 899999999999999999999999999999999999998752     57899


Q ss_pred             EEeeCCCcEeC
Q 048199          485 VSGSDDCKVLY  495 (495)
Q Consensus       485 ~s~s~D~~v~l  495 (495)
                      +|||.||+|+|
T Consensus       374 ~sgs~Dg~i~i  384 (393)
T 1erj_A          374 ATGSGDCKARI  384 (393)
T ss_dssp             EEEETTSEEEE
T ss_pred             EEECCCCcEEE
Confidence            99999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.74  E-value=4.3e-18  Score=168.10  Aligned_cols=150  Identities=13%  Similarity=0.153  Sum_probs=115.7

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ...++..+++|+.|+.+++|++... ....+..+.     +|.+.|++++|+|++++|++++.|++|++||+.++.    
T Consensus        19 ~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----   88 (377)
T 3dwl_C           19 FNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFS-----DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----   88 (377)
T ss_dssp             ECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBC-----CCSSCEEEEEECTTTCCEEEEETTSSEEEC----------
T ss_pred             ECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEe-----cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----
Confidence            3445677889999999999998521 112233333     899999999999999999999999999999999861    


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc---ceeeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ---SVMEYEE-HEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..........|...|++++|+|+ +.+|++|+.|+.|++||++++.   ....+.+ |...|++++|+| ++.+|++|+.
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~  166 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCA  166 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEES
T ss_pred             ceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeC
Confidence            00122334468889999999999 8999999999999999999877   4777887 999999999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      |++|++
T Consensus       167 d~~i~i  172 (377)
T 3dwl_C          167 DRKAYV  172 (377)
T ss_dssp             SSCEEE
T ss_pred             CCEEEE
Confidence            999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.74  E-value=1.6e-17  Score=175.25  Aligned_cols=152  Identities=12%  Similarity=0.143  Sum_probs=122.2

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCc-e--------------------EE-------------EEeec----cccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRL-R--------------------VI-------------AELRH----GDIFHSA  376 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~-~--------------------~~-------------~~~~~----~~~~~h~  376 (495)
                      .+++..+++|+.|++++||++...... .                    .+             +....    ..+.+|.
T Consensus        68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~  147 (611)
T 1nr0_A           68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA  147 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred             CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence            456778899999999999997421110 0                    00             00001    1244799


Q ss_pred             CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ..|++++|+|++. .|++|+.|++|++||....       .......+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEEC
Confidence            9999999999887 6999999999999998765       222234468889999999999 999999999999999999


Q ss_pred             CCCcceeecc-------cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          456 TTQQSVMEYE-------EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       456 ~~~~~~~~~~-------~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .++..+..+.       +|.+.|++++|+| +|.+|+|++.|++|+|
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKI  265 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEE
Confidence            9999888884       7999999999999 9999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.74  E-value=2.6e-17  Score=158.21  Aligned_cols=144  Identities=15%  Similarity=0.259  Sum_probs=122.1

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+++|++..   ...+..+.     +|...|.++.|+|++++|++|+.|++|++||+.++      
T Consensus        74 ~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------  139 (312)
T 4ery_A           74 SSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------  139 (312)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT---CCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------
T ss_pred             cCCCCEEEEECCCCEEEEEECCC---CcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Confidence            34567788999999999999853   34455555     78999999999999999999999999999999886      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ........|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+. .|...+..++|+| ++.+|++++.|+.|
T Consensus       140 -~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i  216 (312)
T 4ery_A          140 -KCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTL  216 (312)
T ss_dssp             -CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEE
T ss_pred             -EEEEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence             222233357788999999999 8999999999999999999998887764 4567899999999 99999999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       217 ~i  218 (312)
T 4ery_A          217 KL  218 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.74  E-value=8.2e-19  Score=131.59  Aligned_cols=70  Identities=23%  Similarity=0.487  Sum_probs=64.5

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ..+.+++.||||+++|.+|++++|||+||+.||.+|+.. ...||.||+++...++.+|+.+.++++.+..
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~   73 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999987 6799999999999999999999999998864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.74  E-value=4.7e-18  Score=164.14  Aligned_cols=160  Identities=13%  Similarity=0.146  Sum_probs=123.2

Q ss_pred             CCCccccccccc---cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCc
Q 048199          325 PHTKQESDKNII---HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRR  399 (495)
Q Consensus       325 ~~~~~~~~~~~~---~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~  399 (495)
                      .|...+....+.   .+..+++|+.|+++++|++.. .....+..+.     +|...|++++|+|+  +.+|++|+.|++
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~-----~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHA-----GHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS-SCCCEEEEEC-----CCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC-CcceEEEEcc-----CCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            344444444432   257789999999999999853 2223344444     89999999999997  789999999999


Q ss_pred             EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC----------------CCEEEEecCCCcEEEEeCCCC---cc
Q 048199          400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS----------------KNRIASSDYEGIVTVWDVTTQ---QS  460 (495)
Q Consensus       400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----------------~~~l~sg~~dg~v~iwd~~~~---~~  460 (495)
                      |++||+......    ........|...+.+++|+|+.                +.+|++|+.|++|++||++.+   ..
T Consensus       129 i~lwd~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  204 (316)
T 3bg1_A          129 ISLLTYTGEGQW----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE  204 (316)
T ss_dssp             EEEEEECSSSCE----EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred             EEEEecCCCCCc----ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence            999999864100    0011223577789999999872                368999999999999999755   46


Q ss_pred             eeecccccCcEEEEEeecCCC----CeEEEeeCCCcEeC
Q 048199          461 VMEYEEHEKRAWSVDFSRTEP----SMLVSGSDDCKVLY  495 (495)
Q Consensus       461 ~~~~~~h~~~v~~v~~~~~~g----~~l~s~s~D~~v~l  495 (495)
                      +..+.+|..+|++++|+| ++    .+|+|||.|++|+|
T Consensus       205 ~~~l~~h~~~V~~v~~sp-~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          205 EQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             EECCBCCSSCEEEEECCC-CSSCSCCEEEEEETTCEEEE
T ss_pred             eeecccCCCceEEEEecC-CCCCCCceEEEEcCCCeEEE
Confidence            788999999999999999 65    78999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.74  E-value=8e-18  Score=170.03  Aligned_cols=156  Identities=10%  Similarity=0.134  Sum_probs=122.0

Q ss_pred             CCCccccccccc--cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 048199          325 PHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKV  402 (495)
Q Consensus       325 ~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~v  402 (495)
                      +|...+....+.  ++..+++|+.|+++++|++..    ..+..+....  .+...+.+++|+|++.+|++|+.|++|++
T Consensus       162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~i~~  235 (435)
T 4e54_B          162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG----NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNVGNVIL  235 (435)
T ss_dssp             SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS----CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC----CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence            344444554443  456789999999999999842    1122222211  34567889999999999999999999999


Q ss_pred             EEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee---cccccCcEEEEEeecC
Q 048199          403 FDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRT  479 (495)
Q Consensus       403 wd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~  479 (495)
                      ||++..        .......|...|++++|+|++..+|++|+.|++|+|||++++.....   ..+|...|++++|+| 
T Consensus       236 wd~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-  306 (435)
T 4e54_B          236 LNMDGK--------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-  306 (435)
T ss_dssp             EESSSC--------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-
T ss_pred             eccCcc--------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-
Confidence            999764        22233468889999999999667899999999999999998765443   367999999999999 


Q ss_pred             CCCeEEEeeCCCcEeC
Q 048199          480 EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 ~g~~l~s~s~D~~v~l  495 (495)
                      +|.+|+||+.||.|+|
T Consensus       307 dg~~l~s~~~D~~i~i  322 (435)
T 4e54_B          307 DGARLLTTDQKSEIRV  322 (435)
T ss_dssp             TSSEEEEEESSSCEEE
T ss_pred             CCCeeEEEcCCCEEEE
Confidence            9999999999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.73  E-value=5.3e-18  Score=163.76  Aligned_cols=149  Identities=12%  Similarity=0.118  Sum_probs=119.4

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..++..+++|+.|++++||++.. .....+..+.     +|.+.|++++|+|  ++++|++|+.|++|++||+.++.   
T Consensus        22 s~~g~~lasgs~D~~v~lwd~~~-~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~---   92 (316)
T 3bg1_A           22 DYYGTRLATCSSDRSVKIFDVRN-GGQILIADLR-----GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT---   92 (316)
T ss_dssp             CGGGCEEEEEETTTEEEEEEEET-TEEEEEEEEE-----CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC---
T ss_pred             cCCCCEEEEEeCCCeEEEEEecC-CCcEEEEEEc-----CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc---
Confidence            35677899999999999999852 1222345555     8999999999975  48999999999999999998751   


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc---ceeecccccCcEEEEEeecCC--------
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ---SVMEYEEHEKRAWSVDFSRTE--------  480 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~--------  480 (495)
                        ........+|...|++++|+|+. +.+|++|+.||+|++||++.+.   ....+.+|...|.+++|+| +        
T Consensus        93 --~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~  169 (316)
T 3bg1_A           93 --WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLID  169 (316)
T ss_dssp             --CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC-----
T ss_pred             --ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccc
Confidence              01112234688899999999973 6799999999999999998753   2466788999999999998 5        


Q ss_pred             ---------CCeEEEeeCCCcEeC
Q 048199          481 ---------PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 ---------g~~l~s~s~D~~v~l  495 (495)
                               +.+|++|+.|++|+|
T Consensus       170 ~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          170 HPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             -CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             cccccCccccceEEEecCCCeEEE
Confidence                     468999999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.73  E-value=5.3e-18  Score=169.01  Aligned_cols=149  Identities=14%  Similarity=0.102  Sum_probs=116.0

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--------CCCEEEEEeCCCcEEEEEcccc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--------DDQLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--------~~~~l~s~s~d~~i~vwd~~~~  408 (495)
                      ....+++|+.|++++||+..... ......+  +.+.||.+.|++++|+|        ++++|+|||.|++|+|||+.++
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~-~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNET-IITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTE-EEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             CCCEEEEEeCCCcEEEEECCCCc-cceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            34457889999999999974321 1111112  34458999999999998        7899999999999999999876


Q ss_pred             ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-------------------------
Q 048199          409 VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME-------------------------  463 (495)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~-------------------------  463 (495)
                             ........|...+.+++|+|+++.+|++|+.||+|++||++++.....                         
T Consensus       177 -------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          177 -------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             -------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             -------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence                   234455678899999999999557899999999999999987654322                         


Q ss_pred             cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          464 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       464 ~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+|...|.++.|.+.++..|++++.|++|++
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence            24678889999998449999999999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.73  E-value=9e-18  Score=165.78  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=114.8

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+++++|++...........+.     +|...|++++|+|++++|++++.|++|++||++.+...   
T Consensus        64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---  135 (377)
T 3dwl_C           64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL-----RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---  135 (377)
T ss_dssp             CTTTCCEEEEETTSSEEEC------CCCCEEECC-----CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---
T ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-----ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---
Confidence            3456778999999999999986432122334443     79999999999999999999999999999999886110   


Q ss_pred             cCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEE
Q 048199          415 VHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVD  475 (495)
Q Consensus       415 ~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~  475 (495)
                       ........ |...|++++|+|+ +.+|++|+.||.|++||++                  .+.++..+ +|...|++++
T Consensus       136 -~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          136 -WVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             -CCCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             -eeeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence             01222233 8889999999999 8999999999999999985                  35567777 8999999999


Q ss_pred             eecCCCCeEEEeeCCCcEeC
Q 048199          476 FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+| ++.+|++++.|++|+|
T Consensus       213 ~sp-~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          213 FSP-SGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ECT-TSSCEEEEETTTEEC-
T ss_pred             ECC-CCCEEEEEeCCCcEEE
Confidence            999 9999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.73  E-value=2.5e-17  Score=176.53  Aligned_cols=148  Identities=19%  Similarity=0.190  Sum_probs=123.0

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|++++||++..   ...+..+.     +|...|.+++|+|++++|++++.|++|++||+......   
T Consensus       439 s~~g~~l~sgs~Dg~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~---  507 (694)
T 3dm0_A          439 SSDGQFALSGSWDGELRLWDLAA---GVSTRRFV-----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY---  507 (694)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE---
T ss_pred             CCCCCEEEEEeCCCcEEEEECCC---CcceeEEe-----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce---
Confidence            34567788999999999999843   33444554     89999999999999999999999999999998654100   


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       .......+|...|.+++|+|+. ...|++|+.||+|+|||++++..+..+.+|.+.|++++|+| ++.+|+||+.||+|
T Consensus       508 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          508 -TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVV  585 (694)
T ss_dssp             -EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBC
T ss_pred             -eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeE
Confidence             0000112577889999999983 26899999999999999999999999999999999999999 99999999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       586 ~i  587 (694)
T 3dm0_A          586 LL  587 (694)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.72  E-value=4.3e-17  Score=158.05  Aligned_cols=137  Identities=12%  Similarity=0.137  Sum_probs=114.2

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .+++++.|..+++|++..   ...+..+.     +|.+.|++++|+|++++|++|+.|++|++||+.+.        ..+
T Consensus       187 ~~~s~~~d~~i~i~d~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--------~~~  250 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLAN---CKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--------KHL  250 (340)
T ss_dssp             EEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--------EEE
T ss_pred             EEEEEcCCCEEEEEECCC---CceeeEec-----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--------cee
Confidence            356788899999999842   34455554     89999999999999999999999999999999986        455


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---------ccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---------EEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ..+.+...+.++.|+|+ +. +++++.|+.|+|||++++..+..+         .+|...|++++|+| +|.+|+||+.|
T Consensus       251 ~~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D  327 (340)
T 4aow_A          251 YTLDGGDIINALCFSPN-RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTD  327 (340)
T ss_dssp             EEEECSSCEEEEEECSS-SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETT
T ss_pred             eeecCCceEEeeecCCC-Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCC
Confidence            56667788999999998 64 556667999999999987665554         46889999999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      |+|+|
T Consensus       328 g~v~i  332 (340)
T 4aow_A          328 NLVRV  332 (340)
T ss_dssp             SCEEE
T ss_pred             CEEEE
Confidence            99985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.72  E-value=3.1e-17  Score=158.88  Aligned_cols=151  Identities=18%  Similarity=0.229  Sum_probs=120.3

Q ss_pred             ccCcccchhhHHhhhhhhhcccC------ceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSR------LRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~------~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~  409 (495)
                      +..+++|+.|+.+++|++.....      ...+..+.     +|.+.|.+++|+|+  +.+|++++.|++|++||+.++.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-----DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-----ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            67789999999999999853211      13344444     78999999999999  9999999999999999997652


Q ss_pred             cCCC---------------Cc----------------------------------CC---Cee-ecCCCCCeEEEEEcCC
Q 048199          410 NEPA---------------DV----------------------------------HC---PVV-EMPTRSKLSCLSWNKF  436 (495)
Q Consensus       410 ~~~~---------------~~----------------------------------~~---~~~-~~~~~~~i~~~~~~p~  436 (495)
                      ....               ..                                  ..   .+. ...|...|++++|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS  225 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence            1100               00                                  00   011 1257788999999999


Q ss_pred             CC----CEEEEecCCCcEEEEeCCCC----------------------------------------------cceeeccc
Q 048199          437 SK----NRIASSDYEGIVTVWDVTTQ----------------------------------------------QSVMEYEE  466 (495)
Q Consensus       437 ~~----~~l~sg~~dg~v~iwd~~~~----------------------------------------------~~~~~~~~  466 (495)
                       +    .+|++|+.||.|++||++++                                              ..+..+.+
T Consensus       226 -~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          226 -IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             -SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             -CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence             5    79999999999999999864                                              56777889


Q ss_pred             ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |...|++++|+| ++.+|++|+.||.|+|
T Consensus       305 h~~~v~~~~~s~-~~~~l~s~~~dg~v~i  332 (351)
T 3f3f_A          305 HNGEVWSVSWNL-TGTILSSAGDDGKVRL  332 (351)
T ss_dssp             TSSCEEEEEECS-SSCCEEEEETTSCEEE
T ss_pred             ccccEEEEEEcC-CCCEEEEecCCCcEEE
Confidence            999999999999 9999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.71  E-value=7e-17  Score=166.38  Aligned_cols=148  Identities=12%  Similarity=0.120  Sum_probs=107.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceE--EEEeeccccccCCCcEEEEEEccC------CCEEEEEeCCCcEEEEEcccccc
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRV--IAELRHGDIFHSANIVSSIEFDRD------DQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~~p~------~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      ..+++|+.|++++||++.. .+...  ...+.     +|.+.|++++|+|+      +.+|++++.|++|+|||+..+..
T Consensus       174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~-----~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~  247 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIV-----HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT  247 (524)
T ss_dssp             --------CEEEEEEEEET-TTCCEEEEEEEE-----ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred             hhhccCCCCceEEEEEccC-CCCCceEEEEEE-----ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence            3467888999999999743 22111  12233     67899999999996      57999999999999999987521


Q ss_pred             CC---CCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEE--EeecCCC-C
Q 048199          411 EP---ADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSV--DFSRTEP-S  482 (495)
Q Consensus       411 ~~---~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v--~~~~~~g-~  482 (495)
                      ..   .....+. ...+|...|++++|+++ + .|++|+.||+|++||++++. +...+.+|...|++|  +|++ +| .
T Consensus       248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~  324 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDT  324 (524)
T ss_dssp             SSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred             ccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCe
Confidence            10   0011122 23467889999999986 4 89999999999999999764 456789999999999  5677 87 8


Q ss_pred             eEEEeeCCCcEeC
Q 048199          483 MLVSGSDDCKVLY  495 (495)
Q Consensus       483 ~l~s~s~D~~v~l  495 (495)
                      +|+|||.|++|+|
T Consensus       325 ~laS~S~D~tvkl  337 (524)
T 2j04_B          325 VVSTVAVDGYFYI  337 (524)
T ss_dssp             EEEEEETTSEEEE
T ss_pred             EEEEeccCCeEEE
Confidence            9999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.71  E-value=2.4e-17  Score=165.10  Aligned_cols=144  Identities=8%  Similarity=0.157  Sum_probs=118.3

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+.+|++.   .......+.     +|.+.|++++|+|++++|++++.|++|++||+.++      
T Consensus       106 ~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------  171 (420)
T 3vl1_A          106 KLQMRRFILGTTEGDIKVLDSN---FNLQREIDQ-----AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG------  171 (420)
T ss_dssp             CSSSCEEEEEETTSCEEEECTT---SCEEEEETT-----SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred             ecCCCEEEEEECCCCEEEEeCC---Ccceeeecc-----cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence            3456678899999999999974   223333333     89999999999999999999999999999999986      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc---cCcEEE------------------
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH---EKRAWS------------------  473 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h---~~~v~~------------------  473 (495)
                       .......+|...|++++|+|+ +.+|++|+.||+|++||++++..+..+..|   ...|.+                  
T Consensus       172 -~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          172 -SNPRTLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             -CCCEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             -cCceEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence             233334468899999999999 899999999999999999999988888753   344444                  


Q ss_pred             ---EEeecCCCCeEEEeeCCCcEeC
Q 048199          474 ---VDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       474 ---v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                         ++|+| ++.+|++|+.||.|++
T Consensus       250 v~~~~~s~-~~~~l~~~~~dg~i~i  273 (420)
T 3vl1_A          250 KNNLEFGT-YGKYVIAGHVSGVITV  273 (420)
T ss_dssp             CCTTCSSC-TTEEEEEEETTSCEEE
T ss_pred             ccceEEcC-CCCEEEEEcCCCeEEE
Confidence               45577 8899999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.70  E-value=9.8e-17  Score=167.65  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=121.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+.+++|+..    ...+..+.     +|...|++++|+|++++|++++.|++|++||....       
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~----~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-------  458 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRN----GQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-------  458 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT----CCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-------
T ss_pred             CCCCEEEEEeCCCEEEEEeCC----CCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-------
Confidence            456678899999999999863    23344454     89999999999999999999999999999997543       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .......|...|++++|+|+ +.+|++++.|++|+|||. ++..+..+.+|...|++++|+| ++.+|++++.|+.|+|
T Consensus       459 -~~~~~~~~~~~v~~~~~spd-~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~l  534 (577)
T 2ymu_A          459 -LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL  534 (577)
T ss_dssp             -EEEEEECCSSCEEEEEECTT-SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred             -EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEE
Confidence             23344578889999999999 999999999999999995 6889999999999999999999 9999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.2e-17  Score=179.18  Aligned_cols=157  Identities=11%  Similarity=0.091  Sum_probs=118.3

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCce--EEEEeecc--ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLR--VIAELRHG--DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~--~~~~~~~~--~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~  410 (495)
                      ..++..+++|+.|++|++|++... ...  ....+...  ...+|...|++++|+|++++||+|+.|++|+|||+.++..
T Consensus       444 spdg~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~  522 (902)
T 2oaj_A          444 AEYGTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF  522 (902)
T ss_dssp             CSEEEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred             cccCcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccc
Confidence            356778999999999999998532 111  11111100  0017899999999999999999999999999999987521


Q ss_pred             CC-------CC-------------------------------cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          411 EP-------AD-------------------------------VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       411 ~~-------~~-------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ..       ..                               ........+|.+.|++++|+|| | +|++|+.|++|+|
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd-G-~lAsgs~D~tv~l  600 (902)
T 2oaj_A          523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI-G-FVGIAYAAGSLML  600 (902)
T ss_dssp             ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-S-EEEEEETTSEEEE
T ss_pred             cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC-c-EEEEEeCCCcEEE
Confidence            00       00                               0001122358899999999999 8 9999999999999


Q ss_pred             EeCCCCcce-----eecc-cccCcEEEEEee-----cCCC---CeEEEeeCCCcEeC
Q 048199          453 WDVTTQQSV-----MEYE-EHEKRAWSVDFS-----RTEP---SMLVSGSDDCKVLY  495 (495)
Q Consensus       453 wd~~~~~~~-----~~~~-~h~~~v~~v~~~-----~~~g---~~l~s~s~D~~v~l  495 (495)
                      ||++++..+     ..+. +|..+|++|+|+     | ||   .+|++|+.|++|++
T Consensus       601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~  656 (902)
T 2oaj_A          601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVIT  656 (902)
T ss_dssp             EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEE
T ss_pred             EECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEE
Confidence            999876554     3454 899999999999     8 75   79999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.70  E-value=5.7e-17  Score=161.79  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=125.9

Q ss_pred             CCcccccccc-c-cccCcccchhhHHhhhhhhhcccCc----eEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCC
Q 048199          326 HTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRL----RVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSR  398 (495)
Q Consensus       326 ~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~----~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~  398 (495)
                      |...+....+ . ++..+++|+.|+++++|++......    ..+..+.     +|...|.+++|+|++ ++|++++.|+
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            3333344333 3 5677899999999999998542110    2344444     899999999999998 6999999999


Q ss_pred             cEEEEEccccccCCCCcCCCeee---cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCc-EEE
Q 048199          399 RIKVFDFASVVNEPADVHCPVVE---MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKR-AWS  473 (495)
Q Consensus       399 ~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~-v~~  473 (495)
                      +|++||+.++        ..+..   ..|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+ .+|.+. +.+
T Consensus       155 ~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  225 (402)
T 2aq5_A          155 VILVWDVGTG--------AAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVH  225 (402)
T ss_dssp             CEEEEETTTT--------EEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred             EEEEEECCCC--------CccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceE
Confidence            9999999986        23333   358889999999998 899999999999999999999999998 788776 899


Q ss_pred             EEeecCCCCeEEEe---eCCCcEeC
Q 048199          474 VDFSRTEPSMLVSG---SDDCKVLY  495 (495)
Q Consensus       474 v~~~~~~g~~l~s~---s~D~~v~l  495 (495)
                      ++|+| ++.+|++|   +.|+.|++
T Consensus       226 ~~~~~-~~~~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          226 AVFVS-EGKILTTGFSRMSERQVAL  249 (402)
T ss_dssp             EEECS-TTEEEEEEECTTCCEEEEE
T ss_pred             EEEcC-CCcEEEEeccCCCCceEEE
Confidence            99999 99999999   78998874

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-17  Score=129.73  Aligned_cols=71  Identities=28%  Similarity=0.652  Sum_probs=63.6

Q ss_pred             cCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCC--CCCCCCCCcC-ccCCCcchHHHHHHHHHHhHh
Q 048199           47 SELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK--SDCPCCGHYL-TNNQLYPNFLLDKLLKKTSAR  117 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~-~~~~l~~n~~l~~~v~~~~~~  117 (495)
                      +.+++++.|+||+++|.+|++++ |||+||+.||.+|+...  ..||.||.++ ..+++.+|+.+.++++.+...
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~   82 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE   82 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence            56788999999999999999999 99999999999999644  5899999997 567899999999999988653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.69  E-value=2e-16  Score=154.81  Aligned_cols=144  Identities=15%  Similarity=0.212  Sum_probs=116.5

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD----DQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +..+..+..+.+|++........+....   ...|...|++++|+|+    +.+|++|+.|++|++||+.++       .
T Consensus        37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~  106 (366)
T 3k26_A           37 VFATVGSNRVTLYECHSQGEIRLLQSYV---DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------Q  106 (366)
T ss_dssp             EEEEEETTEEEEEEECGGGCEEEEEEEE---CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------C
T ss_pred             EEEECCCCEEEEEEcCCCcEEEeeeecc---ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------e
Confidence            4455555589999986433333333222   1147889999999998    679999999999999999886       2


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .......|...|.+++|+|+++.+|++|+.||.|++||++++..+..+   .+|...|.+++|+| ++.+|++++.||.|
T Consensus       107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  185 (366)
T 3k26_A          107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSL  185 (366)
T ss_dssp             EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCE
Confidence            222333688999999999933999999999999999999999988888   78999999999999 99999999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ++
T Consensus       186 ~i  187 (366)
T 3k26_A          186 KL  187 (366)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=1e-16  Score=160.99  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=117.1

Q ss_pred             ccccCcccchhhHHhhhhhhhcccC-ceEEEEeeccccccCCCcEEEEEEccCC-CEEEE--EeCCCcEEEEEccccccC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSR-LRVIAELRHGDIFHSANIVSSIEFDRDD-QLFAT--AGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s--~s~d~~i~vwd~~~~~~~  411 (495)
                      ..+..+.++..|+.+++|+...... ...+....     .|.+.|.+++|+|.+ .++++  |+.|++|++||+.++   
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-----~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---  311 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---  311 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-----CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---
T ss_pred             CCCCeeeeeeccccceEEeeccccccceeeeeec-----ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---
Confidence            4556678899999999999753221 11222333     789999999999955 46655  457999999999987   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe--cCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS--DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg--~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                           .....+.+...+.++.|+|+ +..++++  +.||.|+|||+.++.++..+.+|.+.|++++|+| +|.+|+|||.
T Consensus       312 -----~~~~~~~~~~~v~~~~~~~~-~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~  384 (420)
T 4gga_A          312 -----ACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAA  384 (420)
T ss_dssp             -----EEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEET
T ss_pred             -----ccceeeccccceeeeeecCC-CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEec
Confidence                 44555566778999999999 6666654  4799999999999999999999999999999999 9999999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      |++|+|
T Consensus       385 D~tvri  390 (420)
T 4gga_A          385 DETLRL  390 (420)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.69  E-value=1.7e-16  Score=157.53  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=121.0

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccC---CCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHS---ANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVV  409 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~  409 (495)
                      .++ .+++|+.|+.+.+|++..   ...+..+..  ..+|   ...|.+++|+|++.+|++++.|   +.|++||+.++ 
T Consensus       196 ~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-  268 (397)
T 1sq9_A          196 ERG-LIATGFNNGTVQISELST---LRPLYNFES--QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-  268 (397)
T ss_dssp             TTS-EEEEECTTSEEEEEETTT---TEEEEEEEC--CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-
T ss_pred             CCc-eEEEEeCCCcEEEEECCC---CceeEEEec--cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-
Confidence            345 788899999999999853   345555551  0128   8999999999999999999999   99999999876 


Q ss_pred             cCCCCcCCCeeec-C-------------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc------cc--
Q 048199          410 NEPADVHCPVVEM-P-------------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE------EH--  467 (495)
Q Consensus       410 ~~~~~~~~~~~~~-~-------------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~------~h--  467 (495)
                             ..+..+ .             |...|.+++|+|+ +.+|++|+.||.|+|||++++..+..+.      +|  
T Consensus       269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  340 (397)
T 1sq9_A          269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE  340 (397)
T ss_dssp             -------CEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred             -------cccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence                   222222 3             7889999999999 8999999999999999999999999999      88  


Q ss_pred             -------------cCcEEEEEeecCCC----------CeEEEeeCCCcEeC
Q 048199          468 -------------EKRAWSVDFSRTEP----------SMLVSGSDDCKVLY  495 (495)
Q Consensus       468 -------------~~~v~~v~~~~~~g----------~~l~s~s~D~~v~l  495 (495)
                                   ...|++++|+| ++          .+|++|+.||.|+|
T Consensus       341 ~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          341 DILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             GCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             hhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCCCcEEE
Confidence                         99999999999 87          79999999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.69  E-value=2.2e-16  Score=152.78  Aligned_cols=165  Identities=11%  Similarity=0.169  Sum_probs=124.0

Q ss_pred             CCCcccccccc-ccccCcccchhhHHhhhhhhhcccC-ceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcE
Q 048199          325 PHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSR-LRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRI  400 (495)
Q Consensus       325 ~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i  400 (495)
                      .|...+....+ .++..+++|+.|+.+++|++..... ...+..+.     +|...|++++|+|  ++++|++++.|++|
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-----cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            34433444333 4566789999999999999853222 23444444     7999999999999  69999999999999


Q ss_pred             EEEEccccccCCCC--cCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcc-----------------
Q 048199          401 KVFDFASVVNEPAD--VHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQS-----------------  460 (495)
Q Consensus       401 ~vwd~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~-----------------  460 (495)
                      ++||+..+......  .........|...|.+++|+|+. +.+|++|+.||.|++||++++..                 
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999876211100  01122333688899999999974 67899999999999999876542                 


Q ss_pred             -------------------------------------------eeecccccCcEEEEEeecCCC----CeEEEeeCCCcE
Q 048199          461 -------------------------------------------VMEYEEHEKRAWSVDFSRTEP----SMLVSGSDDCKV  493 (495)
Q Consensus       461 -------------------------------------------~~~~~~h~~~v~~v~~~~~~g----~~l~s~s~D~~v  493 (495)
                                                                 +..+.+|...|++++|+| ++    .+|++|+.||.|
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeE
Confidence                                                       445567899999999999 77    799999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       243 ~i  244 (351)
T 3f3f_A          243 RI  244 (351)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.9e-16  Score=155.67  Aligned_cols=146  Identities=16%  Similarity=0.218  Sum_probs=121.1

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +..+++|+.|+.+++|++.. .+...+..+.     +|...|++++|+|+  +.+|++++.|++|++||+....     .
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~  137 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----T  137 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-----C
T ss_pred             CCEEEEeccCCEEEEEEcCC-CceeEeeeec-----CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-----c
Confidence            67788999999999999853 2222444444     78999999999998  9999999999999999998761     1


Q ss_pred             CCCeeecCCCCCeEEEEEcCC------------CCCEEEEecCCCcEEEEeCCCCc----ceeecccccCcEEEEEeecC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKF------------SKNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRT  479 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~------------~~~~l~sg~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~  479 (495)
                      ........|...|.+++|+|.            ++.+|++|+.||.|++||++++.    .+..+.+|...|++++|+| 
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-  216 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-  216 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-
Confidence            123344578889999999993            38999999999999999998764    4567888999999999999 


Q ss_pred             C---CCeEEEeeCCCcEeC
Q 048199          480 E---PSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 ~---g~~l~s~s~D~~v~l  495 (495)
                      +   +.+|++++.||.|+|
T Consensus       217 ~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEE
T ss_pred             CCCCCCeEEEEeCCCEEEE
Confidence            7   899999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.69  E-value=1.5e-16  Score=157.54  Aligned_cols=154  Identities=10%  Similarity=0.176  Sum_probs=122.3

Q ss_pred             CCCccccccccc-cc-cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEE
Q 048199          325 PHTKQESDKNII-HR-EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIK  401 (495)
Q Consensus       325 ~~~~~~~~~~~~-~~-~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~  401 (495)
                      .+...+....+. ++ ..+++|+.|+.++||++... ...  ..+.   ..+|.+.|.+++|+| ++++|++++.|++|+
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~--~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKT--SFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCE--EEEC---CCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccc--eeee---cCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            344444444433 34 57899999999999998532 222  2222   126999999999999 789999999999999


Q ss_pred             EEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199          402 VFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       402 vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      +||+...        ......   .+...|.+++|+|+ +.+|++|+.||.|++||+ ++..+..+.+|...|.+++|+|
T Consensus       145 iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          145 LRDFSGS--------VIQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             EEETTSC--------EEEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred             EEECCCC--------ceEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence            9999864        111221   34477999999999 899999999999999999 5888999999999999999999


Q ss_pred             CCCC-eEEEeeCCCcEeC
Q 048199          479 TEPS-MLVSGSDDCKVLY  495 (495)
Q Consensus       479 ~~g~-~l~s~s~D~~v~l  495 (495)
                       ++. +|++|+.|+.|+|
T Consensus       215 -~~~~~l~s~~~d~~i~i  231 (383)
T 3ei3_B          215 -RCDWLMATSSVDATVKL  231 (383)
T ss_dssp             -SCTTEEEEEETTSEEEE
T ss_pred             -CCCCEEEEEeCCCEEEE
Confidence             777 9999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.69  E-value=1.8e-16  Score=169.88  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=122.6

Q ss_pred             CCCccccccccc-c-ccCcccchhhHHhhhhhhhcccCc--eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199          325 PHTKQESDKNII-H-REGYNAGLADFQSVLTTFTRYSRL--RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI  400 (495)
Q Consensus       325 ~~~~~~~~~~~~-~-~~~~~~g~~d~~~~lw~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i  400 (495)
                      .|...+....+. + ...+++|+.|+++++|++......  .....+.     +|...|.+++|+|++++|++|+.|++|
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----GHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-----CCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            344444444443 2 346889999999999998543221  2233344     899999999999999999999999999


Q ss_pred             EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee---ecccccCcEEEEEee
Q 048199          401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM---EYEEHEKRAWSVDFS  477 (495)
Q Consensus       401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~---~~~~h~~~v~~v~~~  477 (495)
                      +|||+.++       .......+|...|++++|+|+ +.+|+||+.|++|+|||+.......   ...+|...|.+++|+
T Consensus       455 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          455 RLWDLAAG-------VSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EEEETTTT-------EEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EEEECCCC-------cceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            99999886       223344578899999999999 8999999999999999986543222   235799999999999


Q ss_pred             cCCC--CeEEEeeCCCcEeC
Q 048199          478 RTEP--SMLVSGSDDCKVLY  495 (495)
Q Consensus       478 ~~~g--~~l~s~s~D~~v~l  495 (495)
                      | ++  .+|++|+.|++|+|
T Consensus       527 ~-~~~~~~l~s~s~d~~v~v  545 (694)
T 3dm0_A          527 P-NTLQPTIVSASWDKTVKV  545 (694)
T ss_dssp             S-CSSSCEEEEEETTSCEEE
T ss_pred             C-CCCcceEEEEeCCCeEEE
Confidence            9 65  58999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.5e-16  Score=155.38  Aligned_cols=142  Identities=11%  Similarity=0.056  Sum_probs=109.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+++++|++..   ...+.....    .|...|.+++|+|++.+|++|+.|++|++||++++       .
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~-------~  203 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYED---DSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP-------D  203 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSS---SCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT-------T
T ss_pred             CCCEEEEEeCCCcEEEEECCC---CcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-------C
Confidence            566788899999999999853   222333321    45667999999999999999999999999999987       2


Q ss_pred             CC-eeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---ccCcEE--EEEeecCCCCeEEEeeC
Q 048199          417 CP-VVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE---HEKRAW--SVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       417 ~~-~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~---h~~~v~--~v~~~~~~g~~l~s~s~  489 (495)
                      .. ..... |.+.|++++|+|+ +.+|++|+ |+.|++||++++..+..+..   |...+.  +++|+| +|.+|++++.
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~  280 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSN  280 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEET
T ss_pred             CCccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecC
Confidence            22 12233 7899999999999 89999999 55999999999887666554   444454  599999 9999999998


Q ss_pred             -CCcEeC
Q 048199          490 -DCKVLY  495 (495)
Q Consensus       490 -D~~v~l  495 (495)
                       |+.|+|
T Consensus       281 ~d~~i~v  287 (343)
T 3lrv_A          281 ESNSLTI  287 (343)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence             888874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.69  E-value=1.6e-16  Score=160.26  Aligned_cols=146  Identities=12%  Similarity=0.248  Sum_probs=120.4

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ....+++++.|+.+++|++........+..+.     .|...|++++|+|++. +|++|+.|++|++||++..       
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-------  310 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-------  310 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEee-----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-------
Confidence            34567789999999999996433234455554     7889999999999887 7889999999999999975       


Q ss_pred             CCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC--------------CcceeecccccCcEEEEEeecCC
Q 048199          416 HCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT--------------QQSVMEYEEHEKRAWSVDFSRTE  480 (495)
Q Consensus       416 ~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~~~~~  480 (495)
                      ..++.. ..|...|++++|+|++..+|++|+.||.|+|||+..              ...+..+.+|...|++++|+| +
T Consensus       311 ~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~  389 (430)
T 2xyi_A          311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-N  389 (430)
T ss_dssp             TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-S
T ss_pred             CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-C
Confidence            123333 358889999999999557899999999999999986              356778889999999999999 7


Q ss_pred             CC-eEEEeeCCCcEeC
Q 048199          481 PS-MLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~-~l~s~s~D~~v~l  495 (495)
                      +. +|++++.||.|+|
T Consensus       390 ~~~~l~s~s~dg~i~i  405 (430)
T 2xyi_A          390 EPWIICSVSEDNIMQV  405 (430)
T ss_dssp             STTEEEEEETTSEEEE
T ss_pred             CCCEEEEEECCCCEEE
Confidence            77 8999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.8e-16  Score=152.80  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=125.3

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..++.|..|+.+.+|++..  ....+..+.     .|...|.+++|+|++.+|++++.|+.|++||+.++       
T Consensus       185 ~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-------  250 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYDVSN--NYEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-------  250 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEETTT--TTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------
T ss_pred             CCCCEEEEEcCCCEEEEEECCC--CcEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-------
Confidence            4556678888999999999852  234555555     78999999999999999999999999999999986       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--------------cEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--------------IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                       .....+.+...+.+++|+|+ +.++++++.++              .|++||..++..+..+.+|...|++++|+| ++
T Consensus       251 -~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~  327 (369)
T 3zwl_B          251 -QVLKKYETDCPLNTAVITPL-KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QG  327 (369)
T ss_dssp             -CEEEEEECSSCEEEEEECSS-SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS
T ss_pred             -ceeeeecCCCCceeEEecCC-CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CC
Confidence             44455557888999999999 88999999888              899999999999999999999999999999 99


Q ss_pred             CeEEEeeCCCcEeC
Q 048199          482 SMLVSGSDDCKVLY  495 (495)
Q Consensus       482 ~~l~s~s~D~~v~l  495 (495)
                      .+|++++.||.|+|
T Consensus       328 ~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          328 TSYASGGEDGFIRL  341 (369)
T ss_dssp             SEEEEEETTSEEEE
T ss_pred             CEEEEEcCCCeEEE
Confidence            99999999999975

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.68  E-value=1.8e-18  Score=130.19  Aligned_cols=66  Identities=32%  Similarity=0.787  Sum_probs=58.4

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-------CCCCCCCCCcCccCCCcchHHHHHH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-------KSDCPCCGHYLTNNQLYPNFLLDKL  110 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~n~~l~~~  110 (495)
                      ..+.+++.+.|+||++.|.+|++++|||+||+.||.+|+..       ...||.||.++..+++.+|+.+.++
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            44677889999999999999999999999999999999987       4689999999998888888766443

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.68  E-value=9.8e-18  Score=131.86  Aligned_cols=74  Identities=30%  Similarity=0.651  Sum_probs=66.7

Q ss_pred             cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      .++.+++.+.|+||++.|.+|+.+ +|||+||+.||.+|+.....||.||.++...++.+|+.+.++++.+....
T Consensus        15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            345567789999999999999987 89999999999999998899999999999899999999999999887643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.68  E-value=3.7e-16  Score=151.39  Aligned_cols=167  Identities=17%  Similarity=0.202  Sum_probs=129.9

Q ss_pred             cCCCCcccccccccc--ccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC
Q 048199          323 NQPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR  398 (495)
Q Consensus       323 ~~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~  398 (495)
                      +.+|...+....+.+  +..+++|+.|++++||++.....  ..+...+.     +|...|.++.|+|++++|++++.|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-----~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-----GHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-----CCCCCEEEEEECCCCCEEEEEcccc
Confidence            456777777666543  35688999999999999864322  12344444     8999999999999999999999999


Q ss_pred             cEEEEEccccccCCC---------------CcC--------C-------------CeeecCCCCCeEEEEEcCCC-CCEE
Q 048199          399 RIKVFDFASVVNEPA---------------DVH--------C-------------PVVEMPTRSKLSCLSWNKFS-KNRI  441 (495)
Q Consensus       399 ~i~vwd~~~~~~~~~---------------~~~--------~-------------~~~~~~~~~~i~~~~~~p~~-~~~l  441 (495)
                      .|++|+.........               ...        .             ......|...+..++|+++. ..++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence            999999876411000               000        0             01112456778999998873 3578


Q ss_pred             EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          442 ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       442 ~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++++.|+.|++||++++..+..+.+|.+.|++++|+| ++.+|++|+.|+.|+|
T Consensus       189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML  241 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred             EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence            9999999999999999999999999999999999999 9999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.68  E-value=4.1e-16  Score=150.69  Aligned_cols=149  Identities=16%  Similarity=0.172  Sum_probs=121.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+ |+.+++|++........+..+.   ..+|...|.+++|+|++++|++++.|+.|++||+..+..     
T Consensus        61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----  131 (337)
T 1gxr_A           61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-----  131 (337)
T ss_dssp             SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------
T ss_pred             cCCcEEEEcC-CCeEEEEECCCCCceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-----
Confidence            4455566776 8999999986433222233332   126889999999999999999999999999999988610     


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ........|...+.+++|+|+ +.+|++|+.||.|++||++++..+..+.+|...|.+++|+| ++.+|++++.|+.|++
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~  209 (337)
T 1gxr_A          132 RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRS  209 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEE
Confidence            112233457788999999999 89999999999999999999999999999999999999999 9999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=153.07  Aligned_cols=122  Identities=10%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             CCCCcccccccccc----ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199          324 QPHTKQESDKNIIH----REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR  399 (495)
Q Consensus       324 ~~~~~~~~~~~~~~----~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~  399 (495)
                      ..+...+....+..    +..+++|+.|+.+++|++... .......+.     +|.+.|++++|+|++++|++++.|++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCc
Confidence            34444444444443    367899999999999998531 222224444     79999999999999999999999999


Q ss_pred             EEEEEccccccCCCCcCCCeeecCCCCCeEEEEE--cCCCCCEEEEecCCCcEEEEeCCCCcc
Q 048199          400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW--NKFSKNRIASSDYEGIVTVWDVTTQQS  460 (495)
Q Consensus       400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~sg~~dg~v~iwd~~~~~~  460 (495)
                      |++||+.++        .......|...|++++|  +|+ +.+|++|+.||.|++||++++..
T Consensus       110 v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          110 AKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EEEEETTTT--------EEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSC
T ss_pred             EEEEEcCCC--------CceeeccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcE
Confidence            999999986        34455678899999999  888 88999999999999999887653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=159.33  Aligned_cols=153  Identities=16%  Similarity=0.243  Sum_probs=117.7

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ..++..+++| .|+.+++|++........+..++...+.+|...|++++|+|++ ++|++|+.|++|++||++++...  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--  262 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC--  262 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS--
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc--
Confidence            3456677788 7999999998632222222233333455899999999999998 99999999999999999986210  


Q ss_pred             CcCCCeeec-CCCC------------CeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCc---------
Q 048199          414 DVHCPVVEM-PTRS------------KLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKR---------  470 (495)
Q Consensus       414 ~~~~~~~~~-~~~~------------~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~---------  470 (495)
                        ......+ .|..            .|.+++|+|+ +.+|++|+. |.|+|||+++ +.++..+.+|...         
T Consensus       263 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          263 --DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             --CTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             --cceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence              0012222 3333            8999999999 999999998 9999999997 8899999988642         


Q ss_pred             ------EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          471 ------AWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       471 ------v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                            +..++|+| ++.+|++|+.||.|+|
T Consensus       339 ~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~i  368 (447)
T 3dw8_B          339 NDCIFDKFECCWNG-SDSVVMTGSYNNFFRM  368 (447)
T ss_dssp             TSGGGCCCCEEECT-TSSEEEEECSTTEEEE
T ss_pred             ccccccceEEEECC-CCCEEEEeccCCEEEE
Confidence                  23499999 9999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.67  E-value=2.7e-16  Score=158.49  Aligned_cols=152  Identities=12%  Similarity=0.182  Sum_probs=121.6

Q ss_pred             ccCcccchhhHHhhhhhhhcc-------cCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccc
Q 048199          338 REGYNAGLADFQSVLTTFTRY-------SRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~-------~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~  409 (495)
                      +..+++|+.|+.|.+|++...       .....+..+.     +|...|++++|+|++. +|++|+.|++|++||+..+.
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  215 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP  215 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCC
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCC
Confidence            456888899999999998642       1234445555     8999999999999988 99999999999999998741


Q ss_pred             cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---cceeecccccCcEEEEEeecCCCC-eEE
Q 048199          410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---QSVMEYEEHEKRAWSVDFSRTEPS-MLV  485 (495)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~g~-~l~  485 (495)
                      ..............|...|.+++|+|+++.+|++++.||.|++||++++   ..+..+.+|...|++++|+| ++. +|+
T Consensus       216 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~  294 (430)
T 2xyi_A          216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILA  294 (430)
T ss_dssp             BGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEE
T ss_pred             CCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEE
Confidence            1100001122334688899999999965899999999999999999987   57788889999999999999 665 799


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      +|+.||.|+|
T Consensus       295 tg~~dg~v~v  304 (430)
T 2xyi_A          295 TGSADKTVAL  304 (430)
T ss_dssp             EEETTSEEEE
T ss_pred             EEeCCCeEEE
Confidence            9999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.67  E-value=3.8e-16  Score=153.38  Aligned_cols=148  Identities=14%  Similarity=0.210  Sum_probs=120.7

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+.+.+|++.. .+...+..+.     +|...|.+++|+|++++|++++.|++|++||+.++.     
T Consensus        17 s~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   85 (372)
T 1k8k_C           17 NKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----   85 (372)
T ss_dssp             CTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCC-CcEEeeeeec-----CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----
Confidence            34566778888899999999842 2222555555     799999999999999999999999999999998751     


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .........|...|.+++|+|+ +.+|++|+.||.|++||+..+..    .....+|...|.+++|+| ++.+|++|+.|
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  163 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCD  163 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETT
T ss_pred             eeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCC
Confidence            0112223467888999999999 89999999999999999988763    333467899999999999 99999999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      +.|++
T Consensus       164 g~i~~  168 (372)
T 1k8k_C          164 FKCRI  168 (372)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            99874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.67  E-value=1.3e-16  Score=159.67  Aligned_cols=143  Identities=12%  Similarity=0.004  Sum_probs=118.7

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ...++..+++|+.|+.+++|++.....   ..     .+..| ..+....|+|++++|++++.|+.|++||+.++     
T Consensus        64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~---~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----  129 (420)
T 3vl1_A           64 FEKVGSHLYKARLDGHDFLFNTIIRDG---SK-----MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-----  129 (420)
T ss_dssp             EEEEETTEEEEEETTEEEEEECCSEET---TT-----TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-----
T ss_pred             eeecCCeEEEEEcCCcEEEEEecccce---ee-----EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----
Confidence            345677788999999999999743211   10     11133 45556678999999999999999999999876     


Q ss_pred             CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          414 DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       414 ~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                         ..... ..|...|++++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|++++|+| ++.+|++++.|++
T Consensus       130 ---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~  204 (420)
T 3vl1_A          130 ---LQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT  204 (420)
T ss_dssp             ---EEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ---ceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence               33333 378899999999999 88999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |++
T Consensus       205 v~i  207 (420)
T 3vl1_A          205 IRL  207 (420)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.67  E-value=1.3e-17  Score=135.38  Aligned_cols=71  Identities=27%  Similarity=0.544  Sum_probs=64.3

Q ss_pred             ccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           46 VSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      ++.+.+.+.|+||++.|.+|+++ +|||+||+.||.+|+.  ..||.||.++...++.+|+.+.++++.+....
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            45667889999999999999999 9999999999999987  78999999998899999999999999876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=150.26  Aligned_cols=146  Identities=13%  Similarity=0.169  Sum_probs=116.4

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCc-eEEEEeeccccccCCCcEEEEEEccCCC-E--EEEEeCCCcEEEEEcccccc
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRL-RVIAELRHGDIFHSANIVSSIEFDRDDQ-L--FATAGVSRRIKVFDFASVVN  410 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~--l~s~s~d~~i~vwd~~~~~~  410 (495)
                      ...+..+.+|+.|+++++|++...... .......     .|.+.|.++.++|++. +  +++++.+++|++||....  
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~--  231 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--  231 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-----CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeec-----ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--
Confidence            345566788999999999998532211 1122222     6788999999999655 3  346778999999999886  


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE--ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS--SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s--g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                            .......+...+..+.|+|+ +..+++  |+.|+.|+|||+++++++..+.+|.+.|++++|+| +|.+|+|||
T Consensus       232 ------~~~~~~~~~~~v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s  303 (318)
T 4ggc_A          232 ------ACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAA  303 (318)
T ss_dssp             ------CEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEE
T ss_pred             ------cccccccceeeeeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence                  44455567788999999999 666554  45899999999999999999999999999999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .||+|+|
T Consensus       304 ~D~~v~i  310 (318)
T 4ggc_A          304 ADETLRL  310 (318)
T ss_dssp             TTTEEEE
T ss_pred             cCCeEEE
Confidence            9999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=5.2e-16  Score=152.53  Aligned_cols=150  Identities=12%  Similarity=0.143  Sum_probs=121.5

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..++..+++|+.|+.++||++.. .....+..+.     +|.+.|++++|+|+  +++|++++.|++|++||+.++.   
T Consensus        20 s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---   90 (379)
T 3jrp_A           20 DYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---   90 (379)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE---
T ss_pred             cCCCCEEEEEECCCcEEEEecCC-CcceeeeEec-----CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc---
Confidence            34567788999999999999842 2233444554     89999999999976  9999999999999999998861   


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecC----------
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRT----------  479 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~----------  479 (495)
                        .........|...|++++|+|+. +.+|++|+.||.|++||++++.  ....+.+|...|++++|+|.          
T Consensus        91 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (379)
T 3jrp_A           91 --WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  168 (379)
T ss_dssp             --EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred             --eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence              01222334578899999999984 6799999999999999998873  44567789999999999994          


Q ss_pred             --CCCeEEEeeCCCcEeC
Q 048199          480 --EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 --~g~~l~s~s~D~~v~l  495 (495)
                        ++.+|++|+.|+.|++
T Consensus       169 ~~~~~~l~~~~~dg~i~i  186 (379)
T 3jrp_A          169 TKESRKFVTGGADNLVKI  186 (379)
T ss_dssp             -CTTCEEEEEETTSCEEE
T ss_pred             CCCCCEEEEEeCCCeEEE
Confidence              4899999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.66  E-value=5.9e-16  Score=151.96  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=120.3

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+.+++|++.. .+......+     .+|...|.+++|+|++++|++++.|+.|++||+.......   
T Consensus        62 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~---  132 (372)
T 1k8k_C           62 PDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW---  132 (372)
T ss_dssp             TTTTEEEEEETTSCEEEEEEET-TEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE---
T ss_pred             CCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce---
Confidence            4566788899999999999842 211222222     2788999999999999999999999999999998861000   


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEEee
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVDFS  477 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~~~  477 (495)
                      ........|...|.+++|+|+ +.+|++|+.||.|++||++                  ++..+..+.+|...|.+++|+
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  211 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             eeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence            011222457889999999999 8999999999999999953                  678888999999999999999


Q ss_pred             cCCCCeEEEeeCCCcEeC
Q 048199          478 RTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       478 ~~~g~~l~s~s~D~~v~l  495 (495)
                      | ++.+|++++.|+.|++
T Consensus       212 ~-~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          212 A-NGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             S-SSSEEEEEETTTEEEE
T ss_pred             C-CCCEEEEEeCCCEEEE
Confidence            9 9999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.66  E-value=6.3e-16  Score=162.46  Aligned_cols=113  Identities=16%  Similarity=0.230  Sum_probs=102.0

Q ss_pred             cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-C-CCCCeEEEEEcC----------CCCC
Q 048199          372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-P-TRSKLSCLSWNK----------FSKN  439 (495)
Q Consensus       372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~p----------~~~~  439 (495)
                      +.+|...|++++|+|++++|++++.|+.|++||+.++        ..+..+ . |...|++++|+|          + +.
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~-~~  554 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--------EVKTSRWAFRTSKINAISWKPAEKGANEEEIE-ED  554 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EEEECCSCCCSSCEEEEEECCCC------CCS-CC
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--------cceeEeecCCCCceeEEEEcCccccccccccC-CC
Confidence            3468999999999999999999999999999999886        222333 3 888999999999          8 89


Q ss_pred             EEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          440 RIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       440 ~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|++|+.||.|++||+.++ ..+..+.+|...|++++|+| ++. |++++.||+|+|
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~i  609 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKR  609 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEE
T ss_pred             EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEE
Confidence            9999999999999999987 78999999999999999999 988 999999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.66  E-value=3.9e-16  Score=154.46  Aligned_cols=143  Identities=16%  Similarity=0.214  Sum_probs=117.4

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+.+++|++..    ..+..+...  .+|...|.+++|+|++.+|++++.|++|++||+...        
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------  195 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSG----SVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--------  195 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTS----CEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------
T ss_pred             CCCEEEEEeCCCEEEEEECCC----CceEEEecc--CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------
Confidence            456788999999999999862    223333321  146689999999999999999999999999999532        


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      .......|...|.+++|+|+ +. +|++|+.|+.|++||+++    +..+..+ +|...|++++|+|.++.+|++++.|+
T Consensus       196 ~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~  273 (383)
T 3ei3_B          196 EIFKEKLHKAKVTHAEFNPR-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN  273 (383)
T ss_dssp             EEEEEECSSSCEEEEEECSS-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred             EEEEeccCCCcEEEEEECCC-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence            22333468889999999999 66 999999999999999987    5566666 79999999999987789999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|+|
T Consensus       274 ~i~i  277 (383)
T 3ei3_B          274 EIRV  277 (383)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            9875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=158.47  Aligned_cols=153  Identities=12%  Similarity=0.158  Sum_probs=117.9

Q ss_pred             cccccCcccchhhHHhhhhhhhccc--------CceEEEEeeccccccCC------------CcEEEEEEccCC--CEEE
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYS--------RLRVIAELRHGDIFHSA------------NIVSSIEFDRDD--QLFA  392 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~--------~~~~~~~~~~~~~~~h~------------~~V~~l~~~p~~--~~l~  392 (495)
                      ..++..+++|+.|+.++||++....        .+..+..+.     +|.            +.|.+++|+|++  .+|+
T Consensus        37 s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~  111 (447)
T 3dw8_B           37 NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL  111 (447)
T ss_dssp             CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----CCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----cccccccccccccccCceEEEEEcCCCCcceEE
Confidence            3456778999999999999985322        122344444     787            889999999998  7999


Q ss_pred             EEeCCCcEEEEEccccccC------------------CCCcCCC---------------eeecCCCCCeEEEEEcCCCCC
Q 048199          393 TAGVSRRIKVFDFASVVNE------------------PADVHCP---------------VVEMPTRSKLSCLSWNKFSKN  439 (495)
Q Consensus       393 s~s~d~~i~vwd~~~~~~~------------------~~~~~~~---------------~~~~~~~~~i~~~~~~p~~~~  439 (495)
                      +++.|++|++||+......                  ......+               ....+|...|++++|+|+ +.
T Consensus       112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~  190 (447)
T 3dw8_B          112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YE  190 (447)
T ss_dssp             EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SS
T ss_pred             EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC-CC
Confidence            9999999999999874110                  0000000               112468889999999999 89


Q ss_pred             EEEEecCCCcEEEEeCCC-Cccee-------ecccccCcEEEEEeecCCC-CeEEEeeCCCcEeC
Q 048199          440 RIASSDYEGIVTVWDVTT-QQSVM-------EYEEHEKRAWSVDFSRTEP-SMLVSGSDDCKVLY  495 (495)
Q Consensus       440 ~l~sg~~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~g-~~l~s~s~D~~v~l  495 (495)
                      +|++| .||.|++||+++ +..+.       .+.+|...|++++|+| ++ .+|++|+.||.|+|
T Consensus       191 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          191 TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEE
T ss_pred             EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEE
Confidence            99999 799999999984 44444       4778999999999999 87 99999999999975

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.4e-17  Score=127.60  Aligned_cols=68  Identities=21%  Similarity=0.509  Sum_probs=61.3

Q ss_pred             CCCccccccccchhhhccccC-CCCccchhhHHhhhcCC------CCCCC--CCCc-CccCCCcchHHHHHHHHHHhH
Q 048199           49 LDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK------SDCPC--CGHY-LTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ..+++.||||+++|+|||+++ |||+||+.||.+||...      ..||+  |++. +...+|.+|..+.++|+.+..
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~   81 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK   81 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence            467899999999999999996 99999999999999753      48999  8877 888999999999999998865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.66  E-value=3.8e-16  Score=152.78  Aligned_cols=137  Identities=11%  Similarity=0.202  Sum_probs=116.9

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+++|+.|+.+++|++..   ...+..+.     +|...|.+++|+| ++.+|++++.|++|++||+.++        .
T Consensus        86 ~~l~~~~~dg~i~v~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~  149 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPIT---MQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--------T  149 (366)
T ss_dssp             EEEEEEETTCEEEEECTTT---CCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--------E
T ss_pred             CEEEEecCCCEEEEEEchh---ceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--------e
Confidence            4688999999999999853   34455555     7999999999999 8999999999999999999886        2


Q ss_pred             Ceee----cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---------------------------
Q 048199          418 PVVE----MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE---------------------------  466 (495)
Q Consensus       418 ~~~~----~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~---------------------------  466 (495)
                      ....    ..|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+..                           
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             EEEEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            3333    368889999999999 89999999999999999998876665554                           


Q ss_pred             -ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 -HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 -h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       |...|.+++|+   +.+|++++.|+.|++
T Consensus       229 ~~~~~v~~~~~~---~~~l~~~~~d~~i~~  255 (366)
T 3k26_A          229 IHRNYVDCVRWL---GDLILSKSCENAIVC  255 (366)
T ss_dssp             SCSSCCCEEEEE---TTEEEEECSSSEEEE
T ss_pred             CCcceEEEEEEc---CCEEEEEecCCEEEE
Confidence             99999999998   469999999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.66  E-value=1e-15  Score=151.98  Aligned_cols=146  Identities=15%  Similarity=0.204  Sum_probs=115.3

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc---
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV---  415 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~---  415 (495)
                      .++.|..|+.+.+|++..   ...+..+.     +|.+.|.+++|+|++. +|++++.|+.|++||++.........   
T Consensus       158 ~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKS---GSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             EEEEEESSSSEEEEESSS---SCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             EEEEEcCCCeEEEEeCCC---cceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence            577888889999999843   23344444     7899999999999988 58999999999999998762111100   


Q ss_pred             ------CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc------------------------------
Q 048199          416 ------HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ------------------------------  459 (495)
Q Consensus       416 ------~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~------------------------------  459 (495)
                            ........|...|.+++|+|+ +.+|++|+.||.|++||+.++.                              
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV  308 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred             ccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEE
Confidence                  001111357788999999999 9999999999999999987643                              


Q ss_pred             -----------------ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 -----------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 -----------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                                       .+..+.+|...|++++|+| ++.+|++|+.||.|+|
T Consensus       309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i  360 (408)
T 4a11_B          309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILA  360 (408)
T ss_dssp             EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred             EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEE
Confidence                             3555678999999999999 9999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.65  E-value=1.1e-15  Score=147.52  Aligned_cols=141  Identities=14%  Similarity=0.131  Sum_probs=121.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+.+|+.|+.+.+|++..   ...+..+.     +|...|.+++|+|++++|++++.|+.|++||+.++       
T Consensus       151 ~~~~~l~~~~~dg~v~~~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------  215 (337)
T 1gxr_A          151 PDSKVCFSCCSDGNIAVWDLHN---QTLVRQFQ-----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-------  215 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------
T ss_pred             CCCCEEEEEeCCCcEEEEeCCC---Cceeeeee-----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-------
Confidence            3556678888999999999842   34455554     78999999999999999999999999999999986       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .....+.+...+.+++|+|+ +.+|++|+.||.|++||++++.. ..+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus       216 -~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          216 -RQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             -EEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             -ceEeeecCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEE
Confidence             34455567788999999999 89999999999999999997765 46778999999999999 9999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.65  E-value=7.2e-16  Score=175.84  Aligned_cols=145  Identities=15%  Similarity=0.196  Sum_probs=126.0

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+.|+++++|++..   ...+..+.     +|.+.|.+++|+|++++|++++.|++|+|||+.++      
T Consensus       624 s~~~~~l~s~~~d~~i~vw~~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------  689 (1249)
T 3sfz_A          624 SQDGQRIASCGADKTLQVFKAET---GEKLLDIK-----AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG------  689 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred             CCCCCEEEEEeCCCeEEEEECCC---CCEEEEec-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC------
Confidence            34567788999999999999843   34455555     89999999999999999999999999999999987      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ........|...|++++|+|+ ++.++++|+.||.|++||+.++.++..+.+|.+.|++++|+| ++.+|++++.||+|
T Consensus       690 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          690 -KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTL  767 (1249)
T ss_dssp             -CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEE
T ss_pred             -ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeE
Confidence             222233468889999999995 266899999999999999999999999999999999999999 99999999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ++
T Consensus       768 ~v  769 (1249)
T 3sfz_A          768 RL  769 (1249)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.65  E-value=4.9e-16  Score=155.12  Aligned_cols=147  Identities=14%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCC-CEEEEEeCCC---cEEEEEccccccCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDD-QLFATAGVSR---RIKVFDFASVVNEP  412 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~---~i~vwd~~~~~~~~  412 (495)
                      ...+++|+.|+.+++|++..   ...+..+.. +...+|...|.+++|+|++ .+|++++.|+   .|++||++.+    
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~----  250 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA----  250 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST----
T ss_pred             CcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC----
Confidence            45678889999999999853   344444442 1122348899999999987 6899999999   9999999985    


Q ss_pred             CCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC-CeEEEeeC
Q 048199          413 ADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP-SMLVSGSD  489 (495)
Q Consensus       413 ~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g-~~l~s~s~  489 (495)
                         ..+...+  .|...|++++|+|+++.+|++|+.||.|++||+++++.+..+.+|...|++++|+| ++ .+|++++.
T Consensus       251 ---~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~  326 (416)
T 2pm9_A          251 ---NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASF  326 (416)
T ss_dssp             ---TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCS
T ss_pred             ---CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEec
Confidence               1222223  57889999999993389999999999999999999999999999999999999999 77 89999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      |+.|+|
T Consensus       327 d~~i~i  332 (416)
T 2pm9_A          327 DNKIEV  332 (416)
T ss_dssp             SSEEEE
T ss_pred             CCcEEE
Confidence            999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.65  E-value=1e-15  Score=150.26  Aligned_cols=143  Identities=12%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC---------------------------------
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD---------------------------------  388 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~---------------------------------  388 (495)
                      ..|+.|.++++|+...   ...+..+.      |...|.++.|+++.                                 
T Consensus        75 ~~~~~d~~v~iWd~~~---~~~~~~~~------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~  145 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVK---KQDVSRIK------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEF  145 (355)
T ss_dssp             EECSSTTEEEEEETTT---TEEEEEEE------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEE
T ss_pred             EEECCccEEEEEECCC---CcEEEEEE------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEE
Confidence            5677778999999742   23333332      34466777666542                                 


Q ss_pred             --CEEEE--EeCCCcEEEEEccccccCCCCcC-------C--CeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEe
Q 048199          389 --QLFAT--AGVSRRIKVFDFASVVNEPADVH-------C--PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWD  454 (495)
Q Consensus       389 --~~l~s--~s~d~~i~vwd~~~~~~~~~~~~-------~--~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd  454 (495)
                        .+++.  |+.|++|++||+.++........       .  .....+|.+.|++++|+|+ +.+|++|+.||+ |+|||
T Consensus       146 s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          146 SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEE
T ss_pred             EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEE
Confidence              23333  46677777777765410000000       0  2334578899999999999 999999999998 99999


Q ss_pred             CCCCcceeecc-c-ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          455 VTTQQSVMEYE-E-HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       455 ~~~~~~~~~~~-~-h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++++.++..+. + |...|++++|+| ++.+|++++.|++|+|
T Consensus       225 ~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~i  266 (355)
T 3vu4_A          225 TEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHV  266 (355)
T ss_dssp             TTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEE
T ss_pred             CCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEE
Confidence            99999999998 6 999999999999 9999999999999985

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.65  E-value=7.6e-18  Score=132.35  Aligned_cols=71  Identities=24%  Similarity=0.548  Sum_probs=64.0

Q ss_pred             ccCCCCccccccccchhhhccc-cCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      .+.+++++.|+||++.|.+|+. ++|||+||+.||.+|+... ..||.||.++...++.+|..+..+++.+..
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~   88 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT   88 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred             cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence            3566788999999999999998 9999999999999999987 699999999999999999988888777654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.65  E-value=5.5e-16  Score=151.18  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=116.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .++..+++|+.|+.+.+|++...   ..... .     .|...|.+++|+|   ++.+|++++.|+.|++||+..+....
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~-~-----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNM---ALRWE-T-----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTT---EEEEE-E-----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             CCCCEEEEEccCCeEEEEECccC---ceeee-c-----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            45667888999999999998532   22221 2     6788999999999   89999999999999999998861110


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCCC-------------------cceeecccccCcEE
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQ-------------------QSVMEYEEHEKRAW  472 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~-------------------~~~~~~~~h~~~v~  472 (495)
                       . ........|...|++++|+|+ +. +|++|+.||.|++||++++                   ..+..+.+|...|+
T Consensus       249 -~-~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          249 -G-FASVSEKAHKSTVWQVRHLPQ-NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             -E-EEEEEEECCSSCEEEEEEETT-EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             -c-eeeeccCCCcCCEEEEEECCC-CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence             0 000112268889999999999 66 8999999999999999754                   35677889999999


Q ss_pred             EEEeecCCCCeEE-EeeCCCcEeC
Q 048199          473 SVDFSRTEPSMLV-SGSDDCKVLY  495 (495)
Q Consensus       473 ~v~~~~~~g~~l~-s~s~D~~v~l  495 (495)
                      +++|+| ++.+|+ |++.|+.|+|
T Consensus       326 ~~~~s~-~~~~l~~s~~~d~~i~i  348 (357)
T 3i2n_A          326 SLDWSP-DKRGLCVCSSFDQTVRV  348 (357)
T ss_dssp             EEEECS-SSTTEEEEEETTSEEEE
T ss_pred             EEEEcC-CCCeEEEEecCCCcEEE
Confidence            999999 888888 8999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.65  E-value=7.8e-16  Score=155.13  Aligned_cols=162  Identities=10%  Similarity=0.031  Sum_probs=121.0

Q ss_pred             CCcccccccc-c-cccCcccchhhHHhhhhhhhcccCc---eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199          326 HTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRL---RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI  400 (495)
Q Consensus       326 ~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i  400 (495)
                      |...+....+ . ++..+++|+.|++++||++......   .....      .+|.+.|++++|+|++++|++++.|++|
T Consensus        62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee------ccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            3333344333 3 4678899999999999998642111   11111      1588999999999999999999999999


Q ss_pred             EEEEcc---ccccCCCCcCCCeeec---C--CCCCeEEEE--EcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--cc
Q 048199          401 KVFDFA---SVVNEPADVHCPVVEM---P--TRSKLSCLS--WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HE  468 (495)
Q Consensus       401 ~vwd~~---~~~~~~~~~~~~~~~~---~--~~~~i~~~~--~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~  468 (495)
                      ++||+.   .+..........+..+   .  +...+.++.  |+++ +.+|++|+.||.|++||++++..+..+.+  |.
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~  214 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIENSPRH  214 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEECCGGG
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC
Confidence            999995   3200000000011111   1  556677777  5677 88999999999999999999999999998  89


Q ss_pred             CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          469 KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.|++++|+| ++.+|++|+.||.|+|
T Consensus       215 ~~v~~~~~s~-~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          215 GAVSSICIDE-ECCVLILGTTRGIIDI  240 (437)
T ss_dssp             CCEEEEEECT-TSCEEEEEETTSCEEE
T ss_pred             CceEEEEECC-CCCEEEEEcCCCeEEE
Confidence            9999999999 9999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.4e-15  Score=151.69  Aligned_cols=144  Identities=11%  Similarity=0.129  Sum_probs=122.6

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      .+.....++.|..|+.+.+|++...   ..+..+.     +|...|.+++|+|++++|++++.|+.|++||+..+     
T Consensus       213 ~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----  279 (425)
T 1r5m_A          213 EWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLI-----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----  279 (425)
T ss_dssp             EEEETTEEEEECGGGCEEEEETTCS---SCSEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----
T ss_pred             EEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeec-----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----
Confidence            3344556788889999999998532   2333444     78899999999999999999999999999999886     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                        ........|...|.+++|+|+ + +|++++.||.|++||++++..+..+..|...|.+++|+| ++.+|++++.||.|
T Consensus       280 --~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          280 --NSQNCFYGHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQV  354 (425)
T ss_dssp             --SCSEEECCCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             --ccceEecCCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeE
Confidence              222333457889999999999 6 999999999999999999999999999999999999999 99999999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       355 ~i  356 (425)
T 1r5m_A          355 NV  356 (425)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.65  E-value=1.4e-15  Score=151.80  Aligned_cols=142  Identities=15%  Similarity=0.249  Sum_probs=118.9

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+.+.+|++..  ....+..+.     +|.+.|.+++|+|++.+|++|+.|++|++||+.++        
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--------  249 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRI--ANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--------  249 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTS--SSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS--------
T ss_pred             CCCEEEEEcCCCCEEEEeccc--CcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC--------
Confidence            566788999999999999852  223344444     79999999999999999999999999999999986        


Q ss_pred             CCee-ecCCCCCeEEEEEcCCCCCEEEEec--CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE--eeCCC
Q 048199          417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSD--YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS--GSDDC  491 (495)
Q Consensus       417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s--~s~D~  491 (495)
                      .+.. ...|...|.+++|+|++..++++|+  .||.|++||+.++..+..+. |...|.+++|+| ++.+|++  |+.||
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg  327 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDN  327 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTC
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCC
Confidence            3333 3367889999999998677888866  89999999999999998886 667899999999 9999998  44899


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|+|
T Consensus       328 ~i~v  331 (401)
T 4aez_A          328 NLSI  331 (401)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            9875

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.64  E-value=2.9e-17  Score=134.86  Aligned_cols=71  Identities=23%  Similarity=0.519  Sum_probs=63.2

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc-CCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-NQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~l~~n~~l~~~v~~~~~  116 (495)
                      +..+++.+.|+||++.|.+|++++|||+||+.||.+|+... ..||.||.++.. .++.+|+.+.++++.+..
T Consensus        46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            34557789999999999999999999999999999999855 499999999987 789999999999988754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.64  E-value=1.8e-15  Score=150.92  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=117.6

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+++++.|+.+.+|++..   ......+..    .|...|.+++|+|++.+|++|+.|+.|++||+.++       ..
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~---~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~  168 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADS---GSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TK  168 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTT---CCEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CE
T ss_pred             CCCEEEEECCCeEEEeeCCC---CcEeEeeec----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------eE
Confidence            45677888999999999843   223333332    47899999999999999999999999999999886       22


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......|...|.+++|+   +.+|++|+.||.|++||++ .+..+..+.+|...|.+++|+| ++.+|++|+.|+.|++
T Consensus       169 ~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          169 LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQI  243 (401)
T ss_dssp             EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             EEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEE
Confidence            22333688899999995   5699999999999999999 4677889999999999999999 9999999999999975

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=9e-18  Score=128.42  Aligned_cols=67  Identities=30%  Similarity=0.758  Sum_probs=58.7

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC------CCCCCCCCCcCccCCCcchHHHHHH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN------KSDCPCCGHYLTNNQLYPNFLLDKL  110 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~~  110 (495)
                      ...+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+..      ...||.||.++..+++.+|+.+.++
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            445677889999999999999999999999999999999987      5689999999998888888765443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.64  E-value=7e-17  Score=138.28  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ...+.+.+.||||+++|+|||+++|||+||+.||.+|+... ..||+||.++...+|.||..+.++++.+..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~  171 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ  171 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999864 469999999999999999999999998854

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.64  E-value=1e-15  Score=150.20  Aligned_cols=136  Identities=15%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             chhhHHhhhhhhhcccCc------------eE-EEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccc
Q 048199          344 GLADFQSVLTTFTRYSRL------------RV-IAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVV  409 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~------------~~-~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~  409 (495)
                      |..|+.+++|++......            .+ +..+.     +|.+.|++++|+|++.+|++|+.|++ |+|||+.++ 
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-  228 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-----AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-  228 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEEC-----CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEE-----ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence            678889999998532100            01 33333     89999999999999999999999999 999999986 


Q ss_pred             cCCCCcCCCeeec--C-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeeccc------------------
Q 048199          410 NEPADVHCPVVEM--P-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEE------------------  466 (495)
Q Consensus       410 ~~~~~~~~~~~~~--~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~~~------------------  466 (495)
                             ..+..+  + |...|++++|+|+ +.+|++|+.|++|+|||+..+..  ...+.+                  
T Consensus       229 -------~~~~~~~~g~h~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (355)
T 3vu4_A          229 -------VLVREFRRGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL  300 (355)
T ss_dssp             -------CEEEEEECTTCCSCEEEEEECTT-SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred             -------cEEEEEEcCCCCCcEEEEEECCC-CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence                   333333  3 8889999999999 99999999999999999976431  111111                  


Q ss_pred             ---ccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          467 ---HEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       467 ---h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                         +......++|++ ++.+|++++.||.++
T Consensus       301 ~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~  330 (355)
T 3vu4_A          301 SVDKHVRGCKIAWIS-ESSLVVVWPHTRMIE  330 (355)
T ss_dssp             CCCTTCCCCEEEESS-SSEEEEEETTTTEEE
T ss_pred             ccCCCCCceEEEEeC-CCCEEEEEeCCCeEE
Confidence               122236689999 999999999999876

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-17  Score=127.01  Aligned_cols=66  Identities=26%  Similarity=0.731  Sum_probs=58.5

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC------CCCCCCCCCcCccCCCcchHHHHH
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN------KSDCPCCGHYLTNNQLYPNFLLDK  109 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~  109 (495)
                      ...+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+..      ...||.||..+..+++.+|+.+.+
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            445677889999999999999999999999999999999876      679999999999988988876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6.2e-16  Score=154.39  Aligned_cols=142  Identities=7%  Similarity=0.010  Sum_probs=120.2

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+.+.+|++...   ..+..+.     +|...|.++.|+|++ +|++++.|+.|++||+.++       
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-------  320 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNG---NSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-------  320 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSB---SCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-------
T ss_pred             CCCCEEEEEcCCCEEEEEECCCC---ccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-------
Confidence            34566888999999999998532   2233443     688999999999999 9999999999999999886       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--------------------ceeecccccC--cEEE
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--------------------SVMEYEEHEK--RAWS  473 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--------------------~~~~~~~h~~--~v~~  473 (495)
                      ........|...+.+++|+|+ +.+|++|+.||.|++||+.++.                    .+..+.+|..  .|++
T Consensus       321 ~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          321 TLLALSIVDGVPIFAGRISQD-GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             EEEEEEECTTCCEEEEEECTT-SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             cEeEecccCCccEEEEEEcCC-CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence            222233357789999999999 8999999999999999999887                    8899999976  9999


Q ss_pred             EEeecCCCCeEEEeeCCCcEeC
Q 048199          474 VDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       474 v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++|+| ++.+|++++.||.|+|
T Consensus       400 ~~~s~-~~~~l~~~~~dg~i~i  420 (425)
T 1r5m_A          400 LSWNC-AGNKISVAYSLQEGSV  420 (425)
T ss_dssp             EEECT-TSSEEEEEESSSCCEE
T ss_pred             EEccC-CCceEEEEecCceEEE
Confidence            99999 9999999999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.64  E-value=7.6e-16  Score=153.38  Aligned_cols=148  Identities=9%  Similarity=0.040  Sum_probs=104.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ++..+++|++|++++|||+..   ...+..+.     +|...|.+++|+|++ .+|++++.|++|++||+.++.......
T Consensus       155 d~~~las~s~D~tv~~Wd~~~---~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~  226 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTD---EGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS  226 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEET---TEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred             CCCEEEEEECCCeEEEEECCC---Cceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence            567889999999999999842   23344443     678899999999987 489999999999999998652110000


Q ss_pred             C------------------CCeeecCCCCCeEEE----------------------------------------------
Q 048199          416 H------------------CPVVEMPTRSKLSCL----------------------------------------------  431 (495)
Q Consensus       416 ~------------------~~~~~~~~~~~i~~~----------------------------------------------  431 (495)
                      .                  ......+|...+.++                                              
T Consensus       227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred             ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence            0                  000000111111111                                              


Q ss_pred             ---------------EEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          432 ---------------SWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       432 ---------------~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                                     .|+|. ++.++++|+.||+|+|||+.++..+..+.+|..+|++|+|+| +|.+||++++||.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~Gv~  383 (393)
T 4gq1_A          307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGSVL  383 (393)
T ss_dssp             CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSEEE
T ss_pred             cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence                           22221 234667888899999999998888888888999999999999 99999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-15  Score=165.04  Aligned_cols=146  Identities=16%  Similarity=0.215  Sum_probs=122.1

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +..+++|+.|+++++|++.. .....+..+.     +|...|++++|+|+  +.+|++|+.|++|++||+..+.     .
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-----~  135 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----T  135 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-----C
T ss_pred             CCEEEEEeCCCeEEEEECCC-Cccccccccc-----CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-----C
Confidence            66789999999999999853 2222344444     79999999999998  9999999999999999998761     1


Q ss_pred             CCCeeecCCCCCeEEEEEcCC------------CCCEEEEecCCCcEEEEeCCCC----cceeecccccCcEEEEEeecC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKF------------SKNRIASSDYEGIVTVWDVTTQ----QSVMEYEEHEKRAWSVDFSRT  479 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~------------~~~~l~sg~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~  479 (495)
                      ........|...|.+++|+|.            ++.+|++|+.||.|++||++++    ..+..+.+|...|++++|+| 
T Consensus       136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  214 (753)
T 3jro_A          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-  214 (753)
T ss_dssp             CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-
T ss_pred             cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-
Confidence            233344578889999999994            3889999999999999999876    55678889999999999999 


Q ss_pred             C---CCeEEEeeCCCcEeC
Q 048199          480 E---PSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 ~---g~~l~s~s~D~~v~l  495 (495)
                      +   +.+|++|+.||.|++
T Consensus       215 ~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEE
T ss_pred             CCCCCCEEEEEecCCEEEE
Confidence            7   899999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-15  Score=152.37  Aligned_cols=162  Identities=19%  Similarity=0.352  Sum_probs=123.8

Q ss_pred             CCccccccccc-c-ccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEE
Q 048199          326 HTKQESDKNII-H-REGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIK  401 (495)
Q Consensus       326 ~~~~~~~~~~~-~-~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~  401 (495)
                      +...+....+. + +..+++|+.|+.+++|++....... ....+....+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus       112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS  191 (416)
T ss_dssp             SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred             CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence            33333333333 3 5678899999999999986432000 0000111223378999999999998 78999999999999


Q ss_pred             EEEccccccCCCCcCCCeeecC-------CCCCeEEEEEcCCCCCEEEEecCCC---cEEEEeCCCC-cceeecc-cccC
Q 048199          402 VFDFASVVNEPADVHCPVVEMP-------TRSKLSCLSWNKFSKNRIASSDYEG---IVTVWDVTTQ-QSVMEYE-EHEK  469 (495)
Q Consensus       402 vwd~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~sg~~dg---~v~iwd~~~~-~~~~~~~-~h~~  469 (495)
                      +||+.++        ..+..+.       |...+.+++|+|++..+|++++.|+   .|++||++++ ..+..+. +|..
T Consensus       192 iwd~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~  263 (416)
T 2pm9_A          192 IWDLKAK--------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK  263 (416)
T ss_dssp             EEETTTT--------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred             EEECCCC--------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence            9999886        2222222       2678999999999557999999999   9999999986 6788888 9999


Q ss_pred             cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          470 RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       470 ~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .|++++|+|.++.+|++++.|+.|+|
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~  289 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLL  289 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence            99999999867899999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.63  E-value=2e-15  Score=144.32  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=116.0

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+.+.+|+..     ..+..+..    .|...|.+++|+|++. |++++.|+.|++||+.++        
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~--------  215 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQND-----KVIKTFSG----IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG--------  215 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETT-----EEEEEECS----SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC--------
T ss_pred             CCCEEEEEECCCCEEEEecC-----ceEEEEec----cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch--------
Confidence            46678889999999999842     23444441    3889999999999988 889999999999999886        


Q ss_pred             CCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..+. ...|...|++++|+|+ + .|++|+.||.|++||++++..+..+..|...|++++|+| ++. +++++.||.|+|
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPN-G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTT-S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEE
T ss_pred             hhhhhhhcCCceEEEEEEecC-C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEE
Confidence            2333 3368889999999999 6 689999999999999999999999999999999999999 887 667999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.63  E-value=1.1e-15  Score=166.55  Aligned_cols=145  Identities=16%  Similarity=0.148  Sum_probs=124.1

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .+++..+++|+.|+.+.||++.   ....+..+.     +|.+.|++++|+|++++|++++.|++|++||+.++      
T Consensus        22 sp~~~~la~~~~~g~v~iwd~~---~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------   87 (814)
T 3mkq_A           22 HPTEPWVLTTLYSGRVEIWNYE---TQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------   87 (814)
T ss_dssp             CSSSSEEEEEETTSEEEEEETT---TTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred             CCCCCEEEEEeCCCEEEEEECC---CCceEEEEe-----cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence            4456678888899999999974   234455555     78999999999999999999999999999999887      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ........|.+.|++++|+|+ +.+|++|+.||.|++||+.++ .....+.+|...|.+++|+|.++.+|++++.||.|
T Consensus        88 -~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           88 -EKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             -cEEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence             222333468889999999999 889999999999999999987 67788899999999999998667899999999998


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ++
T Consensus       166 ~v  167 (814)
T 3mkq_A          166 KV  167 (814)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.62  E-value=9.3e-16  Score=149.53  Aligned_cols=147  Identities=13%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEE----EccCCCEEEEEeCCCcEEEEEccccccC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIE----FDRDDQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~----~~p~~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .++..+++|+.|+.+++|++....  ..+..+.... ..+...|+++.    |+|++++|++++.|+.|++||++++   
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---  200 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQKD--DPVANMEPVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---  200 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSCS--SCSEEECCCT-TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---
T ss_pred             CCccEEEEEeCCCeEEEEeCCCCC--CcceeccccC-CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---
Confidence            345678899999999999986432  1233333100 01245899998    7889999999999999999999986   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcC---CCCCEEEEecCCCcEEEEeCCCCcceeecc-----cccCcEEEEEeecCCCC-
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNK---FSKNRIASSDYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTEPS-  482 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p---~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~g~-  482 (495)
                           .......+...|.+++|+|   + +.+|++|+.||.|++||++++..+..+.     +|...|++++|+| ++. 
T Consensus       201 -----~~~~~~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  273 (357)
T 3i2n_A          201 -----ALRWETNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRE  273 (357)
T ss_dssp             -----EEEEEEECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEE
T ss_pred             -----ceeeecCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCc
Confidence                 3345567888999999999   7 8999999999999999999887776665     8999999999999 877 


Q ss_pred             eEEEeeCCCcEeC
Q 048199          483 MLVSGSDDCKVLY  495 (495)
Q Consensus       483 ~l~s~s~D~~v~l  495 (495)
                      +|++|+.||.|+|
T Consensus       274 ~l~~~~~dg~i~i  286 (357)
T 3i2n_A          274 LFLTAGGAGGLHL  286 (357)
T ss_dssp             EEEEEETTSEEEE
T ss_pred             EEEEEeCCCcEEE
Confidence            8999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.62  E-value=3.9e-15  Score=149.45  Aligned_cols=140  Identities=16%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ...++.|. |.+|+||+... .+...+..+.     +|...|++|+|+|+|++|++|+.|++|+|||+.++       ..
T Consensus       116 ~n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~-----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~  181 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASS-GDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KR  181 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTT-CCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EE
T ss_pred             CCEEEEEe-CCEEEEEECCC-CCEEEEEEec-----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------cE
Confidence            34455665 78999999843 2222333333     78899999999999999999999999999999987       22


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .....+|...+.++.|+   +.+|++|+.|+.+++||... ...+..+.+|...+..+.|+| ++.++++++.|+.|+|
T Consensus       182 ~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i  256 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV  256 (420)
T ss_dssp             EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             EEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceE
Confidence            33344688889999987   56999999999999999986 456688899999999999999 9999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.62  E-value=4.8e-15  Score=150.59  Aligned_cols=159  Identities=15%  Similarity=0.168  Sum_probs=124.2

Q ss_pred             CCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEc--cCCCEEEEEeCCCcEEE
Q 048199          325 PHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFD--RDDQLFATAGVSRRIKV  402 (495)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~l~s~s~d~~i~v  402 (495)
                      .+...+....+.....+++|+.|+++++|++.   ....+..+.     +|.+.|.+++|+  +++.+|++++.|++|++
T Consensus       160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             CCSSCEEEEEECSTTEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred             CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC---CCcEEEEEC-----CCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence            34444444444444578899999999999984   334455555     799999999999  47789999999999999


Q ss_pred             EEccccccCCCCcC----------------CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          403 FDFASVVNEPADVH----------------CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       403 wd~~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      ||+...........                ......+|...+.++..  + +.+|++|+.||.|++||++++..+..+.+
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  308 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGSYDNTLIVWDVAQMKCLYILSG  308 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--C-CCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            99987621110000                01123357777887754  4 78999999999999999999999999999


Q ss_pred             ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |...|++++|+| ++.+|++|+.||.|++
T Consensus       309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          309 HTDRIYSTIYDH-ERKRCISASMDTTIRI  336 (464)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Confidence            999999999999 9999999999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.2e-15  Score=151.50  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=118.6

Q ss_pred             ccccCc-ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGY-NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~-~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .++..+ ++|+.|++++||++... ....+..+..   ..|...|.+++|+|++.+|++++.|+.|++|++..+..... 
T Consensus       112 ~d~~~l~~~~~~dg~v~iwd~~~~-~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~-  186 (450)
T 2vdu_B          112 SDESRLIACADSDKSLLVFDVDKT-SKNVLKLRKR---FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF-  186 (450)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECSS-SSSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-
T ss_pred             CCCCEEEEEECCCCeEEEEECcCC-CCceeeeeec---ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-
Confidence            445554 78999999999998510 1222333321   15678899999999999999999999999999987611100 


Q ss_pred             cCCCeeecCCCCCeEEEEEcCC--CCCEEEEecCCCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKF--SKNRIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~--~~~~l~sg~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                        ......+|...|++++|+|+  ++.+|++|+.|++|++||++++..+.. +.+|...|++++|+  ++.+|++|+.|+
T Consensus       187 --~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~  262 (450)
T 2vdu_B          187 --TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDD  262 (450)
T ss_dssp             --CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSS
T ss_pred             --cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCC
Confidence              01122357889999999997  356999999999999999999998887 66899999999999  889999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      +|+|
T Consensus       263 ~v~v  266 (450)
T 2vdu_B          263 KIFA  266 (450)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.62  E-value=8.7e-16  Score=154.85  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=99.6

Q ss_pred             cCCCcEEEEEEccCCCEEE----EEeCCCcEEEEEccccccCCCCcCCC----eeecCCCCCeEEEEEcCCCCCEEEEec
Q 048199          374 HSANIVSSIEFDRDDQLFA----TAGVSRRIKVFDFASVVNEPADVHCP----VVEMPTRSKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~----s~s~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~p~~~~~l~sg~  445 (495)
                      .|.+.|++++|+|++++|+    +|+.|++|+|||+.+..........+    ....+|...|++++|+|+.+.+|++|+
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4677899999999999999    88999999999997641100000011    112247789999999998788999999


Q ss_pred             CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .||+|++||++++..+....+|...|++++|+| +|.+|++|+.||+|++
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~i  218 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQ  218 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEE
Confidence            999999999999877777778999999999999 9999999999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-16  Score=116.58  Aligned_cols=60  Identities=32%  Similarity=0.686  Sum_probs=53.8

Q ss_pred             cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n  104 (495)
                      .++.+++.+.|+||++.|.+|+.+ +|||+||+.||.+|+.....||.||+++...++..|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            346778899999999999999987 999999999999999888899999999988777655

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.1e-15  Score=168.03  Aligned_cols=152  Identities=8%  Similarity=0.049  Sum_probs=118.8

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-  411 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-  411 (495)
                      ..+..+..+++++.|++++||++..   ...+..+.      |.+.|++++|+|++++|++|+.|++|++||+.++... 
T Consensus        64 l~fspg~~L~S~s~D~~v~lWd~~~---~~~~~~~~------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           64 MRFVKGIYLVVINAKDTVYVLSLYS---QKVLTTVF------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             EEEETTTEEEEEETTCEEEEEETTT---CSEEEEEE------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEcCCCEEEEEECcCeEEEEECCC---CcEEEEEc------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            3333345688999999999999853   23344442      4578999999999999999999999999999876110 


Q ss_pred             CCC--cCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc------------------cCc
Q 048199          412 PAD--VHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH------------------EKR  470 (495)
Q Consensus       412 ~~~--~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h------------------~~~  470 (495)
                      +..  .... ....+|.+.|++++|+|+++.+|++|+.||+| +||++++..+..+.+|                  ...
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~  213 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK  213 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence            000  0000 11235788999999999756799999999999 9999999888887765                  578


Q ss_pred             EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          471 AWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       471 v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++++|+| +|.+|+||+.||+|+|
T Consensus       214 V~~v~fsp-dg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          214 VIQSLYHP-NSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             eEEEEEcC-CCCEEEEEECCCeEEE
Confidence            99999999 9999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.62  E-value=9e-16  Score=152.27  Aligned_cols=149  Identities=13%  Similarity=0.180  Sum_probs=119.1

Q ss_pred             ccccC-cccchhhHHhhhhhhhc------ccCce--EEEEeec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199          336 IHREG-YNAGLADFQSVLTTFTR------YSRLR--VIAELRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD  404 (495)
Q Consensus       336 ~~~~~-~~~g~~d~~~~lw~~~~------~~~~~--~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd  404 (495)
                      .++.. +++|+.|+.+.+|++..      .....  +...+..  .....|...|.+++|+|++ +|++++.|+.|++||
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            45666 88899999999999864      22211  1112210  0001588999999999999 999999999999999


Q ss_pred             ccccccCCCCcCCCeeec-C---C---CCCeEEEEEcCCCCCEEEEecCC---CcEEEEeCCCCcceeeccc--------
Q 048199          405 FASVVNEPADVHCPVVEM-P---T---RSKLSCLSWNKFSKNRIASSDYE---GIVTVWDVTTQQSVMEYEE--------  466 (495)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~-~---~---~~~i~~~~~~p~~~~~l~sg~~d---g~v~iwd~~~~~~~~~~~~--------  466 (495)
                      ++++        ..+..+ .   |   ...|.+++|+|+ +.+|++|+.|   |.|++||++++..+..+.+        
T Consensus       214 ~~~~--------~~~~~~~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~  284 (397)
T 1sq9_A          214 LSTL--------RPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  284 (397)
T ss_dssp             TTTT--------EEEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CCCC--------ceeEEEeccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence            9876        233333 3   6   889999999999 8999999999   9999999999999999999        


Q ss_pred             -----ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 -----HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 -----h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                           |...|.+++|+| ++.+|++++.|+.|+|
T Consensus       285 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          285 LGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRF  317 (397)
T ss_dssp             -CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred             ccccccCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence                 999999999999 9999999999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.62  E-value=1.1e-16  Score=128.01  Aligned_cols=72  Identities=25%  Similarity=0.577  Sum_probs=63.8

Q ss_pred             cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC----CCcchHHHHHHHHHHhH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN----QLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~~v~~~~~  116 (495)
                      .++.+++++.|+||++.|.+|+++ +|||+||+.||.+|+.....||.||..+...    ++.+|..+.++++.+..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A            8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            345677889999999999999987 9999999999999999889999999999865    68899999999887743

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.61  E-value=9.6e-17  Score=135.47  Aligned_cols=71  Identities=27%  Similarity=0.653  Sum_probs=63.5

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccC-CCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNN-QLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~-~l~~n~~l~~~v~~~~~  116 (495)
                      +..+++.+.|+||++.|.+|++++|||+||+.||.+|+.... .||.||.++... .+.+|+.+.++++.+..
T Consensus        72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            344667899999999999999999999999999999998764 899999999887 89999999999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.8e-15  Score=142.32  Aligned_cols=137  Identities=17%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ++..+++|+.|+.+.+|+.     ...+..+.     .|...|.++.|+| ++++|++++.|+.|++||....       
T Consensus       113 ~~~~l~~~~~d~~i~~~d~-----~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------  175 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWKE-----GSLVYNLQ-----AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------  175 (313)
T ss_dssp             ETTEEEEEETTSEEEEEET-----TEEEEEEE-----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------
T ss_pred             cCCEEEEEeCCCCEEEEcC-----CcEEEecc-----cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------
Confidence            5667889999999999982     23455555     7899999999998 8999999999999999995443       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .......+...+.+++|+|+ +. |++|+.||.|++||++++..+..+.+|...|++++|+| ++ .|++++.||.|++
T Consensus       176 -~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~i  250 (313)
T 3odt_A          176 -IKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRI  250 (313)
T ss_dssp             -EEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEE
T ss_pred             -EEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEE
Confidence             12222237788999999999 65 99999999999999999999999999999999999999 87 6999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.7e-16  Score=158.58  Aligned_cols=143  Identities=10%  Similarity=0.158  Sum_probs=114.4

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+.+++|++..   ...+..+...   .|.+.|++++|+|++.+|++|+.|++|++||++.+        
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------  246 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRT---LERLQIIENS---PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------  246 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTT---CCEEEEEECC---GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------
T ss_pred             CCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC---CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------
Confidence            356788999999999999843   3445555510   27899999999999999999999999999999986        


Q ss_pred             CCeee--cCCCCCeEEEEEcCC---CCCEEEEecCCCcEEEEeCCCCcceeeccc-------------------------
Q 048199          417 CPVVE--MPTRSKLSCLSWNKF---SKNRIASSDYEGIVTVWDVTTQQSVMEYEE-------------------------  466 (495)
Q Consensus       417 ~~~~~--~~~~~~i~~~~~~p~---~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~-------------------------  466 (495)
                      ..+..  ..|...|.+++|+|.   ++.+|++|+.||.|+|||++++.++..+.+                         
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence            33333  367778999966653   267999999999999999999887776654                         


Q ss_pred             -ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          467 -HEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       467 -h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       |...|++++|+  ++.+|++|+.|+.|++
T Consensus       327 ~~~~~v~~l~~~--~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          327 RSLNALSTISVS--NDKILLTDEATSSIVM  354 (437)
T ss_dssp             CSGGGGCCEEEE--TTEEEEEEGGGTEEEE
T ss_pred             ccCCceEEEEEC--CceEEEecCCCCeEEE
Confidence             55567888888  4589999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.1e-15  Score=161.59  Aligned_cols=150  Identities=12%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..++..+++|+.|+++++|++.. .....+..+.     +|.+.|++++|+|+  +++|++|+.|++|++||+.++.   
T Consensus        18 s~dg~~latg~~dg~I~vwd~~~-~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~---   88 (753)
T 3jro_A           18 DYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---   88 (753)
T ss_dssp             CSSSCCEEEEETTTEEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE---
T ss_pred             CCCCCeEEEEECCCcEEEEecCC-CCCccceecc-----CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc---
Confidence            34567789999999999999842 2234444554     89999999999987  9999999999999999998861   


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCC--cceeecccccCcEEEEEeecC----------
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRT----------  479 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~----------  479 (495)
                        .........|...|++++|+|+. +.+|++|+.||.|++||++++  .....+.+|...|.+++|+|.          
T Consensus        89 --~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~  166 (753)
T 3jro_A           89 --WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  166 (753)
T ss_dssp             --EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred             --ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence              01223344688899999999984 679999999999999999877  345567789999999999994          


Q ss_pred             --CCCeEEEeeCCCcEeC
Q 048199          480 --EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       480 --~g~~l~s~s~D~~v~l  495 (495)
                        ++.+|++|+.||.|++
T Consensus       167 ~~d~~~l~sgs~dg~I~i  184 (753)
T 3jro_A          167 TKESRKFVTGGADNLVKI  184 (753)
T ss_dssp             CGGGCCEEEEETTSCEEE
T ss_pred             CCCCCEEEEEECCCeEEE
Confidence              4889999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.9e-14  Score=140.66  Aligned_cols=112  Identities=11%  Similarity=0.156  Sum_probs=101.1

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|.+.|++++|+|++++|++++.|+.|++||+.++       ........|...|++++|+|+ +.+|++++.||.|++|
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLW  101 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEE
Confidence            89999999999999999999999999999999886       222233368889999999999 8999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC-----CcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD-----CKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D-----~~v~l  495 (495)
                      |+.++..+..+. |...|.+++|+| ++.+|++++.+     +.|++
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEE
Confidence            999999998888 889999999999 99999999998     88764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.60  E-value=3.4e-16  Score=115.58  Aligned_cols=60  Identities=30%  Similarity=0.687  Sum_probs=50.7

Q ss_pred             cccCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCC--CCCCCCCCcCcc-CCCcch
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK--SDCPCCGHYLTN-NQLYPN  104 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~-~~l~~n  104 (495)
                      ..+.+.+++.|+||++.|.+|++++ |||+||+.||.+|+...  ..||+||+++.. +.+.+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            3467788999999999999999999 99999999999999865  689999998654 344444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.60  E-value=2.8e-15  Score=145.38  Aligned_cols=142  Identities=11%  Similarity=0.110  Sum_probs=117.7

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEc-cccccCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDF-ASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~-~~~~~~~  412 (495)
                      ..++..+++|+.|+.+++|++...........+.     +|...|.+++|+|+++ +|++++.|+.|++||+ ..+    
T Consensus        20 s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----   90 (342)
T 1yfq_A           20 IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP----   90 (342)
T ss_dssp             EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS----
T ss_pred             cCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC----
Confidence            3456678899999999999986433222333333     7899999999999999 9999999999999999 775    


Q ss_pred             CCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---------CcceeecccccCcEEEEEeecCCC
Q 048199          413 ADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---------QQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       413 ~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                          .......  |...|++++|+|  +.+|++++.||.|++||+++         +.++..+. |...|++++|++ ++
T Consensus        91 ----~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~  162 (342)
T 1yfq_A           91 ----SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR  162 (342)
T ss_dssp             ----SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE
T ss_pred             ----ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc
Confidence                2233345  888999999999  67999999999999999998         88888887 899999999998 65


Q ss_pred             CeEEEeeCCCcEeC
Q 048199          482 SMLVSGSDDCKVLY  495 (495)
Q Consensus       482 ~~l~s~s~D~~v~l  495 (495)
                        |++++.|+.|++
T Consensus       163 --l~~~~~d~~i~i  174 (342)
T 1yfq_A          163 --LIVGMNNSQVQW  174 (342)
T ss_dssp             --EEEEESTTEEEE
T ss_pred             --EEEEeCCCeEEE
Confidence              999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.2e-15  Score=149.38  Aligned_cols=108  Identities=11%  Similarity=0.232  Sum_probs=91.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      +|.+.|++++|+|+|.+||+++.||+|++||....          +..+.|..     .+.+++|||| |.+|++|+.||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~----------l~~l~~~~~~~~~sv~svafSPD-G~~LAsgs~DG  151 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM----------LTNLDSKGNLSSRTYHCFEWNPI-ESSIVVGNEDG  151 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEE----------EEECCCSSCSTTTCEEEEEECSS-SSCEEEEETTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce----------eeeccCCCccccccEEEEEEcCC-CCEEEEEcCCC
Confidence            46889999999999999999999999999995442          12222332     5999999999 99999999999


Q ss_pred             cEEEEeCCCCcc-------eeec----ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          449 IVTVWDVTTQQS-------VMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       449 ~v~iwd~~~~~~-------~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|+|||+.++..       +.++    .+|.++|.+++|+| +|  |++++.|++|++
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrl  206 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFS  206 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEE
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEE
Confidence            999999998753       5666    67889999999999 88  888899999985

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.1e-16  Score=112.04  Aligned_cols=57  Identities=23%  Similarity=0.621  Sum_probs=50.4

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCCCCcCccCCC
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQL  101 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l  101 (495)
                      .++.+++.+.|+||++.+.+|+.++|||+||+.||.+|+. ....||.||+++..+++
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            3466788999999999999999999999999999999995 45799999999887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.60  E-value=7e-15  Score=143.67  Aligned_cols=113  Identities=9%  Similarity=0.284  Sum_probs=99.1

Q ss_pred             cCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccCCCCcCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          374 HSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNEPADVHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      +|.+.|++++|+|+   |++|++|+.|+.|++||+.+..      ... .....|...|++++|+|+ +.+|++|+.||.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~  109 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKT  109 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcC-CCEEEEEcCCCc
Confidence            89999999999998   6999999999999999998730      111 234468899999999999 999999999999


Q ss_pred             EEEEeCCCCcceeecccccCcEEEEEe--ecCCCCeEEEeeCCCcEeC
Q 048199          450 VTVWDVTTQQSVMEYEEHEKRAWSVDF--SRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~g~~l~s~s~D~~v~l  495 (495)
                      |++||+.++..+. +.+|...|++++|  ++ ++.+|++++.|+.|++
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~v  155 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKF  155 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEE
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEE
Confidence            9999999887766 5679999999999  88 8899999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=144.71  Aligned_cols=162  Identities=15%  Similarity=0.145  Sum_probs=127.1

Q ss_pred             CCCcccccccc-c-cccCcccchhhHHhhhhhhhcccCceEEE-----EeeccccccCCCcEEEEEEcc-CCCEEEEEeC
Q 048199          325 PHTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRLRVIA-----ELRHGDIFHSANIVSSIEFDR-DDQLFATAGV  396 (495)
Q Consensus       325 ~~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~  396 (495)
                      .|...+....+ . ++..+++|+.|+.+++|++..........     ........+|...|.+++|+| ++.+|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            34444444444 3 56778899999999999985432222111     111111225899999999999 7889999999


Q ss_pred             CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEE
Q 048199          397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV  474 (495)
Q Consensus       397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v  474 (495)
                      |+.|++||+.++        .....+.+...+.++.|+|.+  +.++++|+.||.|++||++++..+..+.+|...|.++
T Consensus       121 d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          121 DKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             TSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             CCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            999999999986        444555677889999999862  4499999999999999999999999999999999999


Q ss_pred             EeecCCCC-eEEEeeCCCcEeC
Q 048199          475 DFSRTEPS-MLVSGSDDCKVLY  495 (495)
Q Consensus       475 ~~~~~~g~-~l~s~s~D~~v~l  495 (495)
                      +|+| ++. +|++|+.||.|++
T Consensus       193 ~~~~-~~~~ll~~~~~dg~i~i  213 (408)
T 4a11_B          193 SWSP-RYDYILATASADSRVKL  213 (408)
T ss_dssp             EECS-SCTTEEEEEETTSCEEE
T ss_pred             EECC-CCCcEEEEEcCCCcEEE
Confidence            9999 777 5999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.59  E-value=7.8e-15  Score=148.97  Aligned_cols=142  Identities=17%  Similarity=0.241  Sum_probs=116.8

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ...++..+++|+.|+++++|++.   ....+..+.     +|.+.|++++|+|++ +|++|+.|++|++||+.++     
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~---~~~~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-----  193 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSI---NKKFLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-----  193 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----
T ss_pred             EEECCCEEEEEcCCCcEEEEECC---CCcEEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----
Confidence            34466788999999999999984   334566665     899999999999987 9999999999999999987     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcC--CCCCEEEEecCCCcEEEEeCCCCcc-----------------------eeeccccc
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNK--FSKNRIASSDYEGIVTVWDVTTQQS-----------------------VMEYEEHE  468 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p--~~~~~l~sg~~dg~v~iwd~~~~~~-----------------------~~~~~~h~  468 (495)
                        .......+|.+.|.+++|++  + +.+|++|+.||+|++||+.++..                       +..+.+|.
T Consensus       194 --~~~~~~~~h~~~v~~l~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          194 --CCTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             --EEEEEECCCSSCEEEEEEEESSS-CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             --cEEEEECCCCCccEEEEEecCCC-CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence              22223346888999999985  5 78999999999999999987652                       55678899


Q ss_pred             CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          469 KRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..|.++.  + ++.+|++|+.|+.|++
T Consensus       271 ~~v~~~~--~-~~~~l~~~~~d~~i~v  294 (464)
T 3v7d_B          271 ASVRTVS--G-HGNIVVSGSYDNTLIV  294 (464)
T ss_dssp             SCEEEEE--E-ETTEEEEEETTSCEEE
T ss_pred             ceEEEEc--C-CCCEEEEEeCCCeEEE
Confidence            9998874  5 6799999999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.59  E-value=6.3e-15  Score=149.33  Aligned_cols=152  Identities=7%  Similarity=-0.010  Sum_probs=112.0

Q ss_pred             cccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199          329 QESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~  408 (495)
                      .....+.+++..+++++.|+.+++|+...     .+..+. .+..--...|.+++|+|+|++|++|+.||+|+|||+..+
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            34445567788899999999999999532     233222 110000236999999999999999999999999999886


Q ss_pred             ccCCCCcC-CCeee-----cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc---eeec-ccccCcEEEEEeec
Q 048199          409 VNEPADVH-CPVVE-----MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS---VMEY-EEHEKRAWSVDFSR  478 (495)
Q Consensus       409 ~~~~~~~~-~~~~~-----~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~---~~~~-~~h~~~v~~v~~~~  478 (495)
                      ..  .... ..+..     .+|.+.|.+++|+|+ +  +++++.|++|++||+..+..   ..++ .+|...|++++|+ 
T Consensus       162 ~l--~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          162 SE--NTPEFYFESSIRLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             TT--TCCCCEEEEEEECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             cc--ccccceeeeeeecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            10  0000 01122     357789999999999 6  78888899999999987763   3456 4788999999998 


Q ss_pred             CCCCeEEEeeCCCcEeC
Q 048199          479 TEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       479 ~~g~~l~s~s~D~~v~l  495 (495)
                        |.+||+++ |++|++
T Consensus       236 --g~~LASa~-~~tIkL  249 (588)
T 2j04_A          236 --DYKVVLTC-PGYVHK  249 (588)
T ss_dssp             --TTEEEEEC-SSEEEE
T ss_pred             --CCEEEEEe-CCeEEE
Confidence              47999998 688875

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.59  E-value=3.6e-16  Score=130.67  Aligned_cols=65  Identities=31%  Similarity=0.711  Sum_probs=53.7

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHH
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKT  114 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~  114 (495)
                      .+++++.|+||++.|.+|++++|||+||..||.+|+.....||.||+++...  ..++.++.+++.+
T Consensus        49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~  113 (138)
T 4ayc_A           49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKM  113 (138)
T ss_dssp             HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHH
T ss_pred             hccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHH
Confidence            3456789999999999999999999999999999999989999999998643  2355555555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.59  E-value=1.4e-14  Score=140.50  Aligned_cols=149  Identities=12%  Similarity=0.080  Sum_probs=117.4

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-cccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~  416 (495)
                      +..+++|+.|+.+++|++..+...........-..+.|...|.+++|+|++  +++++.|+.|++||+.. +..     .
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-----~  184 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-----N  184 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC-----C
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc-----c
Confidence            677889999999999998653221111111111122478999999999887  88999999999999988 511     1


Q ss_pred             CCeeecCCCCCeEEEEEcC-CCCCEEEEecCCCcEEEEeCCCC------cceeecccccC---------cEEEEEeecCC
Q 048199          417 CPVVEMPTRSKLSCLSWNK-FSKNRIASSDYEGIVTVWDVTTQ------QSVMEYEEHEK---------RAWSVDFSRTE  480 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p-~~~~~l~sg~~dg~v~iwd~~~~------~~~~~~~~h~~---------~v~~v~~~~~~  480 (495)
                      .......+...+.+++|+| + +.+|++|+.||.|++||++..      ..+..+.+|..         .|++++|+| +
T Consensus       185 ~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  262 (342)
T 1yfq_A          185 GTIEESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-R  262 (342)
T ss_dssp             CEEEECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-T
T ss_pred             ceeeecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-C
Confidence            1223446778899999999 8 899999999999999999887      78888888865         999999999 9


Q ss_pred             CCeEEEeeCCCcEeC
Q 048199          481 PSMLVSGSDDCKVLY  495 (495)
Q Consensus       481 g~~l~s~s~D~~v~l  495 (495)
                      +.+|++|+.||.|++
T Consensus       263 ~~~l~~~~~dg~i~v  277 (342)
T 1yfq_A          263 HKFLYTAGSDGIISC  277 (342)
T ss_dssp             TCCEEEEETTSCEEE
T ss_pred             CCEEEEecCCceEEE
Confidence            999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=6e-15  Score=149.52  Aligned_cols=144  Identities=10%  Similarity=0.069  Sum_probs=115.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNE  411 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~  411 (495)
                      .++..+++|+.|+.+.+|++....... .+..     +.+|.+.|++++|+|+   +.+|++|+.|++|++||+.++   
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---  230 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEP-----ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---  230 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCC-----SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---
T ss_pred             CCCCEEEEEeCCCcEEEEecCCccccccccee-----eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---
Confidence            455667788888888888874322111 1112     2379999999999999   999999999999999999876   


Q ss_pred             CCCcCCCee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc----------------------
Q 048199          412 PADVHCPVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH----------------------  467 (495)
Q Consensus       412 ~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h----------------------  467 (495)
                           ..+.  ..+|...|++++|+ + +.+|++|+.|++|+|||+.++..+..+..+                      
T Consensus       231 -----~~~~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (450)
T 2vdu_B          231 -----FIVDKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN  303 (450)
T ss_dssp             -----TCEEEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred             -----ceeeeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence                 2222  33688899999999 7 999999999999999999999988877632                      


Q ss_pred             ---cCcEEEEEeecCCCCeEEEee-CCCcEeC
Q 048199          468 ---EKRAWSVDFSRTEPSMLVSGS-DDCKVLY  495 (495)
Q Consensus       468 ---~~~v~~v~~~~~~g~~l~s~s-~D~~v~l  495 (495)
                         ...|.+++|+| ++.+|++++ .|+.|+|
T Consensus       304 ~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          304 DIIEFAVSKIIKSK-NLPFVAFFVEATKCIII  334 (450)
T ss_dssp             -CBCCCEEEEEECS-SSSEEEEEETTCSEEEE
T ss_pred             ccceEEEEEEEEeC-CCCEEEEEECCCCeEEE
Confidence               35789999999 999999999 8998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.59  E-value=3.6e-15  Score=146.91  Aligned_cols=143  Identities=11%  Similarity=0.076  Sum_probs=108.6

Q ss_pred             ccccCc--ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          336 IHREGY--NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       336 ~~~~~~--~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      +++..+  ++|+.|.+++||++..   ...+..+      .|.+.|++++|+|+|++|++++. ..+.+|+..++..   
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~---~~~~~~~------~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~---  209 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSD---LTEKFEI------ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSC---  209 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTT---TEEEEEE------ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCE---
T ss_pred             CCCCEEEEEECCCCCEEEEeECCC---CcEEEEe------CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcc---
Confidence            344444  3566889999999853   3444444      35678999999999999999985 4566777666510   


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC----cEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG----IVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg----~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~  485 (495)
                        ........|...|++++|+|+ +.++++++.|+    .+++||+..+..    ...+.+|...|++++|+| +|.+||
T Consensus       210 --~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~la  285 (365)
T 4h5i_A          210 --IARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAV  285 (365)
T ss_dssp             --EEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEE
T ss_pred             --eeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceE
Confidence              011122356678999999999 88999998887    688999876543    456788999999999999 999999


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      +|+.|++|+|
T Consensus       286 sgs~D~~V~i  295 (365)
T 4h5i_A          286 LASNDNSIAL  295 (365)
T ss_dssp             EEETTSCEEE
T ss_pred             EEcCCCEEEE
Confidence            9999999985

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.9e-16  Score=116.33  Aligned_cols=60  Identities=28%  Similarity=0.585  Sum_probs=52.5

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL  107 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l  107 (495)
                      +..++.+.|+||++.|.+|++++|||+||+.||.+|+.....||+||.++. ..+.+|..+
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l   69 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL   69 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence            345667899999999999999999999999999999988889999999986 567777544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=9.6e-16  Score=113.20  Aligned_cols=57  Identities=32%  Similarity=0.817  Sum_probs=50.4

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCCCCcCccCCC
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCCGHYLTNNQL  101 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l  101 (495)
                      ..+.+++.+.|+||++.|.+|+.++|||+||+.||.+|+.   ....||.||+++..+++
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            4467788999999999999999999999999999999997   34689999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.58  E-value=1.1e-14  Score=158.55  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=103.8

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|.+.|++++|+|++.+|++++.|++|+|||+.++       ........|.+.|.+++|+|+ +.+|++|+.||.|+||
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence            89999999999999999999999999999999886       222233368889999999999 8999999999999999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+.++..+..+.+|.+.|++++|+| ++.+|++++.||.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v  123 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKL  123 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEE
Confidence            9999999999999999999999999 9999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.57  E-value=1.6e-14  Score=145.62  Aligned_cols=138  Identities=18%  Similarity=0.290  Sum_probs=114.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+++|+.|+.+++|++...........+.     +|...|.++.|  ++++|++|+.|++|++||+.++       ..
T Consensus       223 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-------~~  288 (435)
T 1p22_A          223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-----GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-------EF  288 (435)
T ss_dssp             TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-------CE
T ss_pred             CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-------cE
Confidence            4567889999999999985433322223333     89999999999  7889999999999999999986       22


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......|...|.++.|+   +.+|++|+.||.|++||++++.++..+.+|...|.+++|   ++.+|++|+.||.|+|
T Consensus       289 ~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~v  360 (435)
T 1p22_A          289 VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKV  360 (435)
T ss_dssp             EEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEE
T ss_pred             EEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEE
Confidence            22333678889999996   679999999999999999999999999999999999999   5689999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.56  E-value=2.2e-14  Score=145.01  Aligned_cols=139  Identities=19%  Similarity=0.255  Sum_probs=114.9

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA  413 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~  413 (495)
                      ...++..+++|+.|+++++|++..   ...+..+.     +|.+.|+++.|+  +++|++|+.|++|++||+.++     
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~---~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-----  189 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVT---GKCLRTLV-----GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG-----  189 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT---CCEEEECC-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-----
T ss_pred             EEEcCCEEEEEECCCcEEEEECCC---CcEEEEEc-----CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-----
Confidence            445677889999999999999843   34455555     899999999997  669999999999999999886     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                        .......+|...|.++.|+   +..|++|+.||+|++||+.++..+..+.+|...|.+++|   ++.+|++|+.||.|
T Consensus       190 --~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          190 --ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMV  261 (445)
T ss_dssp             --EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCE
T ss_pred             --cEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEE
Confidence              2222334678889999997   558999999999999999999999999999999999988   56789999999988


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      ++
T Consensus       262 ~i  263 (445)
T 2ovr_B          262 KV  263 (445)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.56  E-value=3.6e-14  Score=135.90  Aligned_cols=139  Identities=17%  Similarity=0.244  Sum_probs=111.7

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..++.| .|++|+||++..   ...+..+.   +.+|...|++++|+|++++|++|+.|++|++||+.++       ...
T Consensus        37 ~~lAvg-~D~tV~iWd~~t---g~~~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-------~~~  102 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASS---GDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRL  102 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTT---CCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------EEE
T ss_pred             CEEEEE-eCCEEEEEECCC---CCEEEEEE---ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-------eeE
Confidence            344445 588999999843   23333332   1278899999999999999999999999999999987       222


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ....+|...+.++.+.   +.++++|+.++.+++|+..++ ..+..+.+|...+..+.|.+ ++.+|++++.|++|+|
T Consensus       103 ~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i  176 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV  176 (318)
T ss_dssp             EEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             EEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeE
Confidence            3334677778777766   569999999999999999875 55678899999999999999 9999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.56  E-value=1.1e-15  Score=144.90  Aligned_cols=70  Identities=20%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ..+.+.+.||||+++|+|||+++|||+||+.||.+|+...+ .||+||.+++..+|.||..+.++++.+..
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~  273 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS  273 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred             CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999998654 59999999999999999999999998854

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.56  E-value=8.8e-15  Score=147.51  Aligned_cols=146  Identities=11%  Similarity=0.108  Sum_probs=108.5

Q ss_pred             cccccCcc----cchhhHHhhhhhhhcc-----cCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEE
Q 048199          335 IIHREGYN----AGLADFQSVLTTFTRY-----SRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFD  404 (495)
Q Consensus       335 ~~~~~~~~----~g~~d~~~~lw~~~~~-----~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd  404 (495)
                      ..++..++    +|+.|++++||++...     .....+..+.  .+.+|.+.|++++|+|+ +.+|++++.|++|++||
T Consensus       101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD  178 (434)
T 2oit_A          101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ  178 (434)
T ss_dssp             CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence            34556666    7899999999998643     1112222222  12278999999999997 88999999999999999


Q ss_pred             ccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------cCcEEEEEee
Q 048199          405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFS  477 (495)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~  477 (495)
                      ++++       ........|...|++++|+|+ +.+|++|+.||+|++||++ +.....+..|       ...|.+++|+
T Consensus       179 ~~~~-------~~~~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          179 VTET-------VKVCATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             ESSS-------EEEEEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             cCCC-------cceeeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            9886       222334457788999999999 9999999999999999998 6555555433       3489999999


Q ss_pred             cCCCCeEEE-eeCCCc
Q 048199          478 RTEPSMLVS-GSDDCK  492 (495)
Q Consensus       478 ~~~g~~l~s-~s~D~~  492 (495)
                      + ++.++++ ++.||.
T Consensus       250 ~-~~~~l~~~~~~dg~  264 (434)
T 2oit_A          250 G-TYVFAIVYAAADGT  264 (434)
T ss_dssp             E-TTEEEEEEEETTCC
T ss_pred             c-CceEEEEEccCCCc
Confidence            9 7766644 334543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.56  E-value=3.6e-16  Score=126.15  Aligned_cols=70  Identities=33%  Similarity=0.747  Sum_probs=60.6

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      +.+.+.+.|+||++.|.+|++++|||+||+.||.+|+...   ..||.||.++...++.+|..+.++++.+..
T Consensus        16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           16 NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             HhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            4456678999999999999999999999999999999865   489999999999899888877777776643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.55  E-value=1.2e-15  Score=123.51  Aligned_cols=69  Identities=23%  Similarity=0.508  Sum_probs=58.3

Q ss_pred             cCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCcc-------CCCcchHHHHHHHHHHh
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTN-------NQLYPNFLLDKLLKKTS  115 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~-------~~l~~n~~l~~~v~~~~  115 (495)
                      ..+.+++.|+||++.|.+|++++|||+||+.||.+|+.. ...||.||..+..       +++..|..+..+++++.
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            455678999999999999999999999999999999976 5689999999864       55667777777776653

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.55  E-value=1.4e-15  Score=111.73  Aligned_cols=57  Identities=33%  Similarity=0.807  Sum_probs=51.9

Q ss_pred             CCCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199           49 LDKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      .++++.|+||++.|.+|       +.++|||+||+.||.+|+.....||.||.++...++.+++
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            45678999999999999       8899999999999999999889999999999988887764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.55  E-value=9.2e-16  Score=124.52  Aligned_cols=74  Identities=32%  Similarity=0.700  Sum_probs=66.4

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      ..+.+++.+.|+||++.|.+|+.++|||+||+.||.+|+.... .||.||.++...++.++..+.+.+..+...+
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C   85 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC   85 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred             hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeEC
Confidence            4577889999999999999999999999999999999998765 9999999999888999999988888776544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.55  E-value=5.4e-14  Score=141.78  Aligned_cols=139  Identities=19%  Similarity=0.307  Sum_probs=116.0

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+++++|++..   ...+..+.     +|...|.++.|+  +.+|++|+.|++|++||+.++...    .
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~----~  247 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNT---GEMLNTLI-----HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI----T  247 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSS---CCEEEEEC-----CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC----E
T ss_pred             CCCEEEEEcCCCeEEEEECCC---CcEEEEEc-----CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc----e
Confidence            667789999999999999843   34455555     799999999996  459999999999999999886110    0


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ......+|...|.+++|+   +.+|++|+.||.|++||++++..+..+.+|...|.+++|+   +.+|++|+.||.|++
T Consensus       248 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~i  320 (435)
T 1p22_A          248 LRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRL  320 (435)
T ss_dssp             EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred             eeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEE
Confidence            113345788899999994   7799999999999999999999999999999999999995   479999999999975

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.4e-15  Score=115.60  Aligned_cols=64  Identities=31%  Similarity=0.662  Sum_probs=54.4

Q ss_pred             cccccCCCCccccccccchhhh----ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccC---CCcchHH
Q 048199           43 EVGVSELDKDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNN---QLYPNFL  106 (495)
Q Consensus        43 ~~~~~~~~~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~---~l~~n~~  106 (495)
                      +...+.+++.+.|+||++.|.+    |+.++|||+||+.||.+|+...   ..||.||+++...   .|..|+.
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~   79 (88)
T 2ct2_A            6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLT   79 (88)
T ss_dssp             CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTT
T ss_pred             ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHH
Confidence            3455778889999999999999    9999999999999999999875   6999999998764   4555554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-15  Score=110.92  Aligned_cols=52  Identities=23%  Similarity=0.531  Sum_probs=47.0

Q ss_pred             CCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199           49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  100 (495)
                      ..+.+.|+||++.+.+|+.++|||+||+.||.+|+.....||+||..+...+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence            3567889999999999999999999999999999998899999999987543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.53  E-value=3.8e-14  Score=161.63  Aligned_cols=147  Identities=18%  Similarity=0.250  Sum_probs=120.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--CC---
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--PA---  413 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~~---  413 (495)
                      ..+++|+.|+.+++|++..   ...+..+.     +|.+.|++++|+|++++|++++.|++|++||+.++...  +.   
T Consensus       714 ~~l~sg~~d~~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  785 (1249)
T 3sfz_A          714 LLLATGSNDFFLKLWDLNQ---KECRNTMF-----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR  785 (1249)
T ss_dssp             CEEEEEETTSCEEEEETTS---SSEEEEEC-----CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred             eEEEEEeCCCeEEEEECCC---cchhheec-----CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence            3467899999999999843   33455554     89999999999999999999999999999999765110  00   


Q ss_pred             ---C-----------cC---------------------------C--CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          414 ---D-----------VH---------------------------C--PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       414 ---~-----------~~---------------------------~--~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                         .           ..                           .  .....+|...+.+++|+|+ +.++++|+.||.|
T Consensus       786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v  864 (1249)
T 3sfz_A          786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCV  864 (1249)
T ss_dssp             CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEEECSSSCE
T ss_pred             cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEEEeCCCeE
Confidence               0           00                           0  0011256778999999999 9999999999999


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++||+.++..+..+.+|...|++++|+| +|.+|++++.||.|++
T Consensus       865 ~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~v  908 (1249)
T 3sfz_A          865 ELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRV  908 (1249)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             EEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEE
Confidence            9999999999999999999999999999 9999999999999874

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.4e-15  Score=134.59  Aligned_cols=72  Identities=18%  Similarity=0.384  Sum_probs=63.6

Q ss_pred             cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCC--CCCCC--CCCcCccCCCcchHHHHHHHHHHhH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK--SDCPC--CGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~--~~CP~--Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      .++....++.||||+++|++||++ .|||+||+.||.+||...  ..||+  |++.+...+|.+|..+.++++....
T Consensus       174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~  250 (267)
T 3htk_C          174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM  250 (267)
T ss_dssp             CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred             eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence            345667889999999999999975 999999999999999865  47999  9999999999999999999887644

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.7e-15  Score=106.44  Aligned_cols=49  Identities=35%  Similarity=0.902  Sum_probs=43.9

Q ss_pred             ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCC
Q 048199           44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCC   92 (495)
Q Consensus        44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~C   92 (495)
                      ..++.+++++.|+||++.|.+|+.++|||+||+.||.+|+.   ....||.|
T Consensus        12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34567888999999999999999999999999999999998   34689998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.52  E-value=7.6e-14  Score=141.03  Aligned_cols=134  Identities=19%  Similarity=0.316  Sum_probs=105.3

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..+++|+.|+.+++|++..   ...+..+.     +|...|.++.+  ++++|++|+.|++|++||+.++        
T Consensus       288 ~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~--------  349 (445)
T 2ovr_B          288 DGIHVVSGSLDTSIRVWDVET---GNCIHTLT-----GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG--------  349 (445)
T ss_dssp             CSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------
T ss_pred             CCCEEEEEeCCCeEEEEECCC---CCEEEEEc-----CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC--------
Confidence            455566777777777777642   23344444     67788887777  4568888888888888888775        


Q ss_pred             CCeeec----CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-----ccccCcEEEEEeecCCCCeEEEe
Q 048199          417 CPVVEM----PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-----EEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       417 ~~~~~~----~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      ..+..+    .|...|++++|+   +.+|++|+.||.|++||+.+++.+..+     .+|.+.|++++|+| ++.+|++|
T Consensus       350 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~  425 (445)
T 2ovr_B          350 QCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVG  425 (445)
T ss_dssp             CEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEE
T ss_pred             cEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEc
Confidence            222222    277789999997   569999999999999999999998888     57889999999999 99999999


Q ss_pred             eCCCc
Q 048199          488 SDDCK  492 (495)
Q Consensus       488 s~D~~  492 (495)
                      +.||+
T Consensus       426 ~~dg~  430 (445)
T 2ovr_B          426 SRNGT  430 (445)
T ss_dssp             CSSSS
T ss_pred             ccCCC
Confidence            99997

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.52  E-value=2.2e-15  Score=130.19  Aligned_cols=71  Identities=37%  Similarity=0.821  Sum_probs=61.0

Q ss_pred             ccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCCcCc-cCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGHYLT-NNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~~v~~~~~  116 (495)
                      .+.+.+.+.|+||++.|.+|+.+ +|||+||+.||.+|+.. ...||.||.++. .+.+.+|+.+.++++.+..
T Consensus        48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            34567788999999999999987 99999999999999987 678999999985 4678999999999888754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.52  E-value=4.2e-14  Score=148.47  Aligned_cols=144  Identities=14%  Similarity=0.130  Sum_probs=119.2

Q ss_pred             cccCcccchhhHHhhhhhhhccc-----CceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEccc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYS-----RLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----RRIKVFDFAS  407 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~  407 (495)
                      ++..+++|+.|+++++|++....     ....+..+.     +|...|.+++|+|++++|++++.|    +.|++||...
T Consensus        77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~  151 (615)
T 1pgu_A           77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN  151 (615)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-----cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC
Confidence            56778899999999999984210     223344444     789999999999999999999988    6888888432


Q ss_pred             cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC---cEEEEEeecCC-CCe
Q 048199          408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK---RAWSVDFSRTE-PSM  483 (495)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~-g~~  483 (495)
                               .......|...|++++|+|++..+|++|+.||.|++||+.+++.+..+.+|..   .|++++|+| + +.+
T Consensus       152 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  221 (615)
T 1pgu_A          152 ---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEF  221 (615)
T ss_dssp             ---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCE
T ss_pred             ---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCE
Confidence                     22233468889999999999434899999999999999999999999999999   999999999 8 999


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      |++++.|+.|++
T Consensus       222 l~~~~~dg~i~v  233 (615)
T 1pgu_A          222 VITVGSDRKISC  233 (615)
T ss_dssp             EEEEETTCCEEE
T ss_pred             EEEEeCCCeEEE
Confidence            999999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=7.5e-15  Score=107.11  Aligned_cols=52  Identities=35%  Similarity=0.810  Sum_probs=47.0

Q ss_pred             cCCCCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+.+.+.|+||++.|.+|       +.++|||+||+.||.+|+.....||+||+++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567788999999999998       789999999999999999988899999998753

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.50  E-value=6.9e-15  Score=105.68  Aligned_cols=55  Identities=25%  Similarity=0.670  Sum_probs=47.4

Q ss_pred             Cccccccccc-hhhhcc----ccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchH
Q 048199           51 KDMLCPICMQ-IIKEAF----LTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        51 ~~l~C~IC~~-~~~~Pv----~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      +++.||||++ .|.+|+    +++|||+||+.||.+|+.. ...||.||+++...++.+++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~   62 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL   62 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence            4678999999 999994    6899999999999999765 46899999999988876653

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.50  E-value=3.9e-15  Score=106.85  Aligned_cols=55  Identities=35%  Similarity=0.834  Sum_probs=49.6

Q ss_pred             Cccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199           51 KDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      +.+.|+||++.|.+|       +.++|||+||..||.+|+.....||.||+++...++.+++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence            467899999999998       7889999999999999999888999999999888776654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.4e-14  Score=101.62  Aligned_cols=48  Identities=31%  Similarity=0.911  Sum_probs=42.5

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCC
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCC   92 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~C   92 (495)
                      .++.+++.+.|+||++.+.+|++++|||+||+.||.+|+.   ....||+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3466788899999999999999999999999999999954   45689998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.49  E-value=1.1e-13  Score=131.77  Aligned_cols=131  Identities=10%  Similarity=0.000  Sum_probs=96.3

Q ss_pred             hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec
Q 048199          346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM  422 (495)
Q Consensus       346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  422 (495)
                      .|..|++|++..  ..+.+..+.     +|...|+.++|+|   ++.+|++++.|++|||||+.++        ..+..+
T Consensus       155 ~d~~V~~~~~s~--dG~~~~s~~-----~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG--------k~l~tL  219 (356)
T 2w18_A          155 SDQQVEVMTFAE--DGGGKENQF-----LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG--------QLLKKM  219 (356)
T ss_dssp             TTCEEEEEEECT--TSCEEEEEE-----ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC--------CEEEEE
T ss_pred             CCCcEEEEEECC--CCceeeeec-----cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC--------cEEEEE
Confidence            467888888742  223344444     7888899999998   7789999999999999999987        222222


Q ss_pred             -CCC---CCeEEEEEcCCCCCEE------------EEecCCCcEEEEeCCCCcceeec-----ccccCcEEEEEeecCCC
Q 048199          423 -PTR---SKLSCLSWNKFSKNRI------------ASSDYEGIVTVWDVTTQQSVMEY-----EEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       423 -~~~---~~i~~~~~~p~~~~~l------------~sg~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~g  481 (495)
                       +|.   ..+.+++|+|+ +.++            ++|+.|++|++||..++..+..+     .+|...+.+.++   ++
T Consensus       220 ~g~~~~v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg  295 (356)
T 2w18_A          220 HIDDSYQASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KD  295 (356)
T ss_dssp             ECCC---CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ET
T ss_pred             cCCCcceeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CC
Confidence             222   35778899998 7665            67889999999999999887665     477766555544   46


Q ss_pred             CeEEEeeCCCcEeC
Q 048199          482 SMLVSGSDDCKVLY  495 (495)
Q Consensus       482 ~~l~s~s~D~~v~l  495 (495)
                      .++++|+.|++|||
T Consensus       296 ~~lASgS~DgTIkI  309 (356)
T 2w18_A          296 HCAAAILTSGTIAI  309 (356)
T ss_dssp             TEEEEEETTSCEEE
T ss_pred             CEEEEEcCCCcEEE
Confidence            89999999999986

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=1.6e-14  Score=107.97  Aligned_cols=58  Identities=26%  Similarity=0.586  Sum_probs=49.9

Q ss_pred             cCCCCccccccccchhhhcc---ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199           47 SELDKDMLCPICMQIIKEAF---LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv---~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n  104 (495)
                      +...+.+.|+||++.|.+|.   .++|||.||+.||.+|+.....||+||+++...++.++
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence            44567789999999998773   56999999999999999988999999999988766554

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.47  E-value=3e-14  Score=105.20  Aligned_cols=56  Identities=20%  Similarity=0.581  Sum_probs=46.3

Q ss_pred             ccCCCCccccccccchhh--hccccC--CCCccchhhHHhhhcC-CCCCCCCCCcCccCCC
Q 048199           46 VSELDKDMLCPICMQIIK--EAFLTA--CGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQL  101 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~--~Pv~l~--CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l  101 (495)
                      ...+++++.||||++.+.  +++.++  |||+||+.|+.+++.. ...||.||+++....+
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            356788999999999994  556665  9999999999999854 4689999999986544

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.47  E-value=1.6e-14  Score=100.00  Aligned_cols=48  Identities=23%  Similarity=0.444  Sum_probs=42.7

Q ss_pred             CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  100 (495)
                      .+.+.|+||++.|.+|++++|||+||+.||.+|   ...||.||+++..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            567899999999999999999999999999883   568999999987643

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.46  E-value=7.7e-15  Score=118.85  Aligned_cols=72  Identities=28%  Similarity=0.526  Sum_probs=59.3

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCc-chHHHHHHHHHHhH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLY-PNFLLDKLLKKTSA  116 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~l~~~v~~~~~  116 (495)
                      ..+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+.. ...||.||.++...++. ++..+..++..+..
T Consensus        16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v   89 (116)
T 1rmd_A           16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV   89 (116)
T ss_dssp             CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred             hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence            33456678999999999999999999999999999999987 57999999999887764 45666666665544

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.46  E-value=7.4e-15  Score=122.39  Aligned_cols=74  Identities=22%  Similarity=0.577  Sum_probs=60.4

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCcc---------CCCcchHHHHHHHHHH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTN---------NQLYPNFLLDKLLKKT  114 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~---------~~l~~n~~l~~~v~~~  114 (495)
                      ..+.+++.+.|+||+++|.+|+.++|||+||+.||.+|+.... .||.||.++..         .++.++..+.+.+..+
T Consensus        24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L  103 (141)
T 3knv_A           24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL  103 (141)
T ss_dssp             TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred             hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence            3467889999999999999999999999999999999998664 89999997532         3456777777777766


Q ss_pred             hHhh
Q 048199          115 SARQ  118 (495)
Q Consensus       115 ~~~~  118 (495)
                      ...+
T Consensus       104 ~v~C  107 (141)
T 3knv_A          104 PAVC  107 (141)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            5533

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.43  E-value=7.4e-14  Score=96.62  Aligned_cols=49  Identities=29%  Similarity=0.737  Sum_probs=43.9

Q ss_pred             CCCccccccccchhhh---ccccC-CCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           49 LDKDMLCPICMQIIKE---AFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~---Pv~l~-CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      +++...|+||++.|.+   ++.++ |||.||..||.+|+.....||.||+++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4667889999999988   67776 9999999999999999999999999874

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.43  E-value=1.5e-14  Score=101.18  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             ccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199           52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      .+.||||+++++|||++ +|||+||+.||++|+....+||++++++...+|.+|.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            47899999999999999 9999999999999999888999999999999998875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.42  E-value=2.9e-14  Score=123.84  Aligned_cols=74  Identities=32%  Similarity=0.700  Sum_probs=65.7

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      .++.+++.+.||||+++|.+|+.++|||+||+.||.+|+.... .||.||.++...++.++..+.+.+..+...+
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C   85 (170)
T 3hcs_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC   85 (170)
T ss_dssp             ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred             hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCC
Confidence            5578899999999999999999999999999999999997654 9999999999888889988888888766543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.40  E-value=1.9e-12  Score=128.01  Aligned_cols=136  Identities=14%  Similarity=0.120  Sum_probs=106.6

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      .+++++.|..+.+|++.   ....+..+.     +| ..+.+++|+|+++++ ++++.|++|++||+.++        ..
T Consensus         4 l~vs~~~d~~v~v~d~~---~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~   66 (391)
T 1l0q_A            4 AYIANSESDNISVIDVT---SNKVTATIP-----VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NV   66 (391)
T ss_dssp             EEEEETTTTEEEEEETT---TTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EE
T ss_pred             EEEEcCCCCEEEEEECC---CCeEEEEee-----cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eE
Confidence            35677888899999984   234455554     34 348999999999976 67779999999999886        33


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY  495 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l  495 (495)
                      ...+.+...+.+++|+|+ +.+| ++++.++.|++||+.+++.+..+..|. .+.+++|+| ++.+| ++++.|+.|++
T Consensus        67 ~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           67 IATVPAGSSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP-DGKKLYVTNNGDKTVSV  142 (391)
T ss_dssp             EEEEECSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCccceEECCC-CCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECC-CCCEEEEEeCCCCEEEE
Confidence            444455558999999999 6655 667778999999999999888887554 689999999 88877 78888998864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.8e-14  Score=103.49  Aligned_cols=54  Identities=31%  Similarity=0.704  Sum_probs=48.5

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  100 (495)
                      ++.+.+.+.|+||++.+.+ +.++|||+||+.||.+|+.....||.||.++...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            4566788999999999999 99999999999999999998899999999987543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.37  E-value=1.8e-12  Score=130.07  Aligned_cols=145  Identities=11%  Similarity=0.076  Sum_probs=112.9

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..++++..|..+.+|+...   ...+..+..+.+.+|.+.|.+++|+|++.++++++.|++|++||+.++        
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--------  201 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINS---GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--------  201 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTT---CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--------
T ss_pred             CCeEEEEeCCCCeEEEEECCC---CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--------
Confidence            344566777788899999743   233343333344579999999999999999999999999999999876        


Q ss_pred             CCeeec-CCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee------
Q 048199          417 CPVVEM-PTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS------  488 (495)
Q Consensus       417 ~~~~~~-~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s------  488 (495)
                      .....+ .+...+.+++|+|+ +..+ ++++.|+.|++||++++..+..+..+ ..+.+++|+| ++.+|++++      
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQ  278 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTT
T ss_pred             eEEEEEcCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCcc
Confidence            222222 56778999999999 6655 66768999999999999888888765 4589999999 999998888      


Q ss_pred             --CCCcEeC
Q 048199          489 --DDCKVLY  495 (495)
Q Consensus       489 --~D~~v~l  495 (495)
                        .|+.|++
T Consensus       279 ~~~dg~i~~  287 (433)
T 3bws_A          279 ESGGGRLGI  287 (433)
T ss_dssp             CSCCEEEEE
T ss_pred             ccCCCeEEE
Confidence              4667653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.36  E-value=1.5e-13  Score=99.63  Aligned_cols=49  Identities=31%  Similarity=0.786  Sum_probs=43.9

Q ss_pred             CCccccccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ++...|+||++.+.+| +.++|||.||+.||.+|+.....||.||.++..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3456899999999997 688999999999999999988999999998863

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.36  E-value=2e-13  Score=94.45  Aligned_cols=47  Identities=30%  Similarity=0.654  Sum_probs=42.2

Q ss_pred             Cccccccccchhhh----ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      +...|+||++.|.+    ++.++|||.||..||.+|+.....||.||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            35679999999976    778999999999999999998899999999864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.35  E-value=6.4e-13  Score=102.12  Aligned_cols=51  Identities=27%  Similarity=0.642  Sum_probs=45.4

Q ss_pred             CCCCccccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           48 ELDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ...++..|+||++.|.+   ++.++|||.||..||.+|+.....||.||.++..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            34567889999999987   7789999999999999999999999999998753

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.5e-13  Score=100.28  Aligned_cols=53  Identities=30%  Similarity=0.639  Sum_probs=46.4

Q ss_pred             ccCCCCccccccccchhhhcccc---CCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           46 VSELDKDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +..+.++..|+||++.|.+|..+   +|||.||+.||.+|+.....||.||+++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            35667788999999999988644   999999999999999988899999998854

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=100.64  Aligned_cols=50  Identities=24%  Similarity=0.563  Sum_probs=44.8

Q ss_pred             CCCccccccccchhhhc---cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           49 LDKDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ..+...|+||++.|.++   +.++|||.||..||.+|+.....||.||+++..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            35667899999999987   678999999999999999988999999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.33  E-value=4e-13  Score=97.71  Aligned_cols=51  Identities=27%  Similarity=0.627  Sum_probs=44.2

Q ss_pred             CCCCccccccccchhh---hccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           48 ELDKDMLCPICMQIIK---EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~---~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ..++...|+||++.|.   .++.++|||.||..||.+|+.....||.||.++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            3456678999999985   45789999999999999999988999999998864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.33  E-value=3.4e-13  Score=112.25  Aligned_cols=55  Identities=35%  Similarity=0.820  Sum_probs=49.8

Q ss_pred             CCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199           50 DKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n  104 (495)
                      .+.+.|+||++.|.+|       +.++|||+||+.||.+|+.....||.||+.+...++.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence            4578999999999999       899999999999999999999999999999987766554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.32  E-value=1.8e-11  Score=121.05  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=105.9

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      ++++..|.++.+|+..   ....+..+.     . ...|.+++|+|++++|+ +++.|++|++||+.++        ..+
T Consensus        47 ~~~~~~d~~i~v~d~~---~~~~~~~~~-----~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--------~~~  109 (391)
T 1l0q_A           47 YVANAHSNDVSIIDTA---TNNVIATVP-----A-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------TVA  109 (391)
T ss_dssp             EEEEGGGTEEEEEETT---TTEEEEEEE-----C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------EEE
T ss_pred             EEECCCCCeEEEEECC---CCeEEEEEE-----C-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC--------eEE
Confidence            3677788999999984   234445554     2 23899999999999775 5556799999999986        334


Q ss_pred             eecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY  495 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l  495 (495)
                      ..+.+...+.+++|+|+ +..| ++++.|+.|++||+.+++.+..+..|. .+.+++|+| ++.+| ++++.|+.|++
T Consensus       110 ~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~-dg~~l~~~~~~~~~v~~  184 (391)
T 1l0q_A          110 GTVKTGKSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTP-DGTKVYVANFDSMSISV  184 (391)
T ss_dssp             EEEECSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             EEEeCCCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECC-CCCEEEEEeCCCCEEEE
Confidence            44456667999999999 6655 789999999999999999888887664 568999999 88777 67788888864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.30  E-value=4.6e-13  Score=98.42  Aligned_cols=48  Identities=31%  Similarity=0.693  Sum_probs=43.1

Q ss_pred             cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+++++.|+||++.+.+|+.+||||+ ||+.|+.+|    ..||.||+++..
T Consensus        19 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             hcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            445677899999999999999999999 999999998    679999998864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.30  E-value=1.8e-11  Score=122.73  Aligned_cols=141  Identities=11%  Similarity=0.050  Sum_probs=111.0

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .++..++++..|..+.+|++..   ...+..+.     .|...+.+++|+|++++++ +++.|+.|++||+.++      
T Consensus       179 ~~~~~~~s~~~d~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------  244 (433)
T 3bws_A          179 EHNELWVSQMQANAVHVFDLKT---LAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------  244 (433)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTT---CCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------
T ss_pred             CCCEEEEEECCCCEEEEEECCC---ceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------
Confidence            3456678888999999999842   33445554     6788999999999999775 5558999999999876      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEec--------CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCC-eEE
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSD--------YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS-MLV  485 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~--------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~-~l~  485 (495)
                        ..+..+.....+.+++|+|+ +.+|++++        .||.|++||+.++..+..+ .|...+.+++|+| ++. +++
T Consensus       245 --~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~-~g~~l~~  319 (433)
T 3bws_A          245 --LEIRKTDKIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGN-TENKIYV  319 (433)
T ss_dssp             --EEEEECCCCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECS-STTEEEE
T ss_pred             --cEEEEecCCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECC-CCCEEEE
Confidence              33444555667999999999 88888887        4889999999988777665 4666899999999 876 557


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      +++.|+.|++
T Consensus       320 ~~~~~~~v~v  329 (433)
T 3bws_A          320 SDMCCSKIEV  329 (433)
T ss_dssp             EETTTTEEEE
T ss_pred             EecCCCEEEE
Confidence            7788998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=7.5e-13  Score=97.67  Aligned_cols=48  Identities=31%  Similarity=0.693  Sum_probs=42.0

Q ss_pred             cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+++.+.|+||++.+.+|+.+||||. ||..|+.+.    ..||.||.++..
T Consensus        20 ~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred             HcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence            444667899999999999999999999 999999764    679999998864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.28  E-value=2.5e-11  Score=121.52  Aligned_cols=124  Identities=10%  Similarity=0.063  Sum_probs=98.4

Q ss_pred             HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEccccccCCCCcCCCeeecCC
Q 048199          348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR---RIKVFDFASVVNEPADVHCPVVEMPT  424 (495)
Q Consensus       348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~  424 (495)
                      .++.+|++.. .   ....+.     +|...|.+++|+|+|++|++++.|+   .|++||+.++        .......+
T Consensus       159 ~~i~i~d~~g-~---~~~~l~-----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------~~~~l~~~  221 (415)
T 2hqs_A          159 YELRVSDYDG-Y---NQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASF  221 (415)
T ss_dssp             EEEEEEETTS-C---SCEEEE-----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------CEEEEECC
T ss_pred             ceEEEEcCCC-C---CCEEEe-----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------cEEEeecC
Confidence            5888998742 1   123333     6788999999999999999999885   9999999986        23334456


Q ss_pred             CCCeEEEEEcCCCCCEEE-EecCCCc--EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC-CC
Q 048199          425 RSKLSCLSWNKFSKNRIA-SSDYEGI--VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD-DC  491 (495)
Q Consensus       425 ~~~i~~~~~~p~~~~~l~-sg~~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~  491 (495)
                      ...+.+++|+|| +..|+ +++.++.  |.+||+.++.. ..+..|...+.+++|+| ||.+|++++. ++
T Consensus       222 ~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g  289 (415)
T 2hqs_A          222 PRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAG  289 (415)
T ss_dssp             SSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTTS
T ss_pred             CCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCCC
Confidence            778999999999 77666 7776665  99999988765 66778889999999999 9999988886 44

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.22  E-value=4.5e-12  Score=102.15  Aligned_cols=48  Identities=29%  Similarity=0.708  Sum_probs=41.3

Q ss_pred             Cccccccccchhhhcc------------------ccCCCCccchhhHHhhh-----cCCCCCCCCCCcCcc
Q 048199           51 KDMLCPICMQIIKEAF------------------LTACGHSFCYMCIITHL-----RNKSDCPCCGHYLTN   98 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv------------------~l~CGH~FC~~Ci~~~~-----~~~~~CP~Cr~~~~~   98 (495)
                      .+..|+||++.|.+|.                  .++|||.||..||.+|+     .....||+||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3458999999998875                  67999999999999999     445799999998864

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=4e-12  Score=95.18  Aligned_cols=49  Identities=22%  Similarity=0.567  Sum_probs=41.6

Q ss_pred             Cccccccccchhhh--------------cccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC
Q 048199           51 KDMLCPICMQIIKE--------------AFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN   99 (495)
Q Consensus        51 ~~l~C~IC~~~~~~--------------Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~   99 (495)
                      ++..|+||++.|.+              ++.+ +|||.||..||.+|+....+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            45679999999977              3444 5999999999999999999999999998653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.19  E-value=3.2e-12  Score=106.31  Aligned_cols=56  Identities=34%  Similarity=0.835  Sum_probs=50.9

Q ss_pred             CCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199           50 DKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF  105 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~  105 (495)
                      ++.+.|+||++.|.+|       +.++|||+||..||.+|+.....||.||.++..+++.++|
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            5678899999999998       8889999999999999999999999999999988877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.19  E-value=1.4e-10  Score=120.08  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=109.9

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEc--cccccCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDF--ASVVNEPA  413 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~--~~~~~~~~  413 (495)
                      .++..++++..|.++.+||..   ....+..+..    +|.  +..++|+|+|++|++++.|++|++||+  .++     
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~---t~~~~~~i~~----g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-----  212 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGD---SKKIVKVIDT----GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-----  212 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETT---TCCEEEEEEC----STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-----
T ss_pred             CCCEEEEEEcCCCeEEEEECC---CceEEEEEec----Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-----
Confidence            345667788889999999974   3344566653    333  889999999999999999999999999  554     


Q ss_pred             CcCCCeeecCCCCCeEEEEEcC----CCCCEEEEecC-CCcEEEEeCCCCcceeeccc----------ccC-cEEEEEee
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNK----FSKNRIASSDY-EGIVTVWDVTTQQSVMEYEE----------HEK-RAWSVDFS  477 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~sg~~-dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~v~~~  477 (495)
                         ..+..+.+...+..++|+|    + +.++++++. +++|.|||..+++++..+..          |.. .+.++.|+
T Consensus       213 ---~~~~~i~~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          213 ---TKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             ---EEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             ---cEEEEEecCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence               2344445566789999999    8 888888884 89999999999998888764          323 78999999


Q ss_pred             cCCCCeEEEeeCCCcEe
Q 048199          478 RTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       478 ~~~g~~l~s~s~D~~v~  494 (495)
                      |.++.++++...++.|.
T Consensus       289 ~~~~~~~vs~~~~g~i~  305 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVL  305 (543)
T ss_dssp             SSSSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCeEE
Confidence            94455677777888875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.16  E-value=1.6e-11  Score=117.53  Aligned_cols=52  Identities=25%  Similarity=0.620  Sum_probs=46.1

Q ss_pred             CCCccccccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCCCCcCccCC
Q 048199           49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~  100 (495)
                      .+....|+||++.+.+|+.++|||+||..||..|+. ....||.||.++....
T Consensus       329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            345578999999999999999999999999999998 6789999999987643

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.14  E-value=8.7e-12  Score=88.52  Aligned_cols=47  Identities=23%  Similarity=0.554  Sum_probs=43.0

Q ss_pred             Cccccccccchhhhcccc--CCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199           51 KDMLCPICMQIIKEAFLT--ACGHS-FCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l--~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ++..|+||++.+.+++.+  ||||. ||..|+.+|+.....||.||+++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            456799999999999977  99999 899999999988889999999875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.12  E-value=5.9e-10  Score=111.45  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=96.2

Q ss_pred             cccCcccchhhH---HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCc--EEEEEcccccc
Q 048199          337 HREGYNAGLADF---QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVN  410 (495)
Q Consensus       337 ~~~~~~~g~~d~---~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~  410 (495)
                      ++..++.++.+.   .+.+|++.. .+   ...+.     +|.+.+.+++|+|+|+.|+ +++.|+.  |.+||+.++  
T Consensus       189 dg~~la~~s~~~~~~~i~~~d~~t-g~---~~~l~-----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~--  257 (415)
T 2hqs_A          189 DGSKLAYVTFESGRSALVIQTLAN-GA---VRQVA-----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--  257 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTT-CC---EEEEE-----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--
T ss_pred             CCCEEEEEEecCCCcEEEEEECCC-Cc---EEEee-----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--
Confidence            444455555553   677887742 11   11222     5678899999999999777 6666655  999999876  


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CC--cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EG--IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                            .......+...+.+++|+|| +..|++++. ++  .|.+||+.++.. ..+..|...+.+++|+| +|.+|+++
T Consensus       258 ------~~~~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~  328 (415)
T 2hqs_A          258 ------QIRQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-DGKFMVMV  328 (415)
T ss_dssp             ------CEEECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-TSSEEEEE
T ss_pred             ------CEEeCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC-CCCEEEEE
Confidence                  22333456678999999999 887777765 45  577779887753 45566778899999999 99999888


Q ss_pred             eCC
Q 048199          488 SDD  490 (495)
Q Consensus       488 s~D  490 (495)
                      +.+
T Consensus       329 ~~~  331 (415)
T 2hqs_A          329 SSN  331 (415)
T ss_dssp             EEC
T ss_pred             ECc
Confidence            764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.11  E-value=1.5e-11  Score=86.97  Aligned_cols=46  Identities=20%  Similarity=0.556  Sum_probs=42.1

Q ss_pred             ccccccccchhhhcccc--CCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199           52 DMLCPICMQIIKEAFLT--ACGHS-FCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l--~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ...|+||++.+.+++++  ||||. ||..|+.+++.....||.||+++.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            45799999999999887  99999 999999999988889999999875

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.09  E-value=8.7e-12  Score=92.51  Aligned_cols=48  Identities=27%  Similarity=0.715  Sum_probs=42.4

Q ss_pred             cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+++...|+||++.+.+|+.+||||. ||..|+.++.    .||.||.++..
T Consensus        13 ~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~   61 (79)
T 2yho_A           13 RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred             HcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence            344567889999999999999999999 9999999874    79999998864

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.07  E-value=5e-11  Score=93.40  Aligned_cols=48  Identities=25%  Similarity=0.492  Sum_probs=41.9

Q ss_pred             Cccccccccchhhhc------------------cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           51 KDMLCPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P------------------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ++..|+||++.|.++                  +.++|||.||..||.+|+.....||.||+++..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            356799999999976                  247999999999999999999999999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=2.5e-11  Score=93.87  Aligned_cols=45  Identities=22%  Similarity=0.565  Sum_probs=39.0

Q ss_pred             Cccccccccchhhhcccc---CCCCccchhhHHhhhcC--------CCCCCC--CCCc
Q 048199           51 KDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRN--------KSDCPC--CGHY   95 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~--------~~~CP~--Cr~~   95 (495)
                      +.+.|+||++.+.+|+++   +|||.||+.|+.+|+..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            467899999999999754   79999999999999874        238999  9998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.02  E-value=4.5e-10  Score=108.30  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=97.3

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC-CcEEEEEcc--ccccCCCCcCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS-RRIKVFDFA--SVVNEPADVHC  417 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d-~~i~vwd~~--~~~~~~~~~~~  417 (495)
                      +.++..|+.+.+|++........+..+      .|...+.+++|+|++++|++++.+ +.|++|++.  ++.      ..
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~------~~   75 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA------LT   75 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC------EE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeE------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc------ee
Confidence            445567889999988432222333333      356678899999999988888876 999999998  330      01


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEe-cCCCcEEEEeC---CCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCc
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASS-DYEGIVTVWDV---TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCK  492 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~---~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~  492 (495)
                      .+..+.....+..++|+|+ +.+|+++ ..++.|.+||+   .++..+..+..+. .+.+++|+| ++.+|++++ .|+.
T Consensus        76 ~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~  152 (343)
T 1ri6_A           76 FAAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISP-DNRTLWVPALKQDR  152 (343)
T ss_dssp             EEEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECT-TSSEEEEEEGGGTE
T ss_pred             eccccccCCCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECC-CCCEEEEecCCCCE
Confidence            2222333347889999999 7766555 45889999999   4444555555443 588899999 998887777 7787


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |++
T Consensus       153 v~~  155 (343)
T 1ri6_A          153 ICL  155 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.8e-10  Score=82.54  Aligned_cols=45  Identities=22%  Similarity=0.672  Sum_probs=39.8

Q ss_pred             CCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      .+...|+||++.+.+++.+||||. ||..|+.+.    ..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhc
Confidence            346789999999999999999999 999999963    579999998864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.00  E-value=5.9e-10  Score=104.68  Aligned_cols=134  Identities=9%  Similarity=-0.001  Sum_probs=95.9

Q ss_pred             cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeee
Q 048199          343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVE  421 (495)
Q Consensus       343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~  421 (495)
                      .+..+..+.||++....  .....+.     .|...+.++.|+|++++|+.++ .++.++||++....      ......
T Consensus       146 ~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------~~~~~~  212 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDS--GVETRLT-----HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------SSVERI  212 (297)
T ss_dssp             EEEETTEEEEEEEETTT--CCEEECC-----CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------SCEEEC
T ss_pred             EECCCCceEEEEEECCC--CcceEcc-----cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC------CCcEEE
Confidence            55566667788753211  1122222     5678899999999999877665 59999999987430      112222


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEecCC-----------CcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199          422 MPTRSKLSCLSWNKFSKNRIASSDYE-----------GIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       422 ~~~~~~i~~~~~~p~~~~~l~sg~~d-----------g~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ..+...+..+.|+|+ +.+|++++.+           +.|.+||+.++..  +..+.+|...+..++|+| ++.+|++++
T Consensus       213 ~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  290 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPS-GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVR  290 (297)
T ss_dssp             CCCSEEEEEEEECTT-SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEE
T ss_pred             ecCCcccCCeEECCC-CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEE
Confidence            245567889999999 8888877765           5699999988765  444557888999999999 999988887


Q ss_pred             CCC
Q 048199          489 DDC  491 (495)
Q Consensus       489 ~D~  491 (495)
                      .|.
T Consensus       291 ~~~  293 (297)
T 2ojh_A          291 YFP  293 (297)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=2e-09  Score=101.04  Aligned_cols=130  Identities=9%  Similarity=0.002  Sum_probs=90.9

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-cccCCCCcCCCeeec
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEM  422 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~  422 (495)
                      +..|.++.+|++..   .. ...+.     .|...|.+++|+|++++|++++ ++.|.+||+.+ +        ......
T Consensus        18 ~~~~~~i~~~d~~~---~~-~~~~~-----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--------~~~~~~   79 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT---RK-MRVVW-----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--------SPEKVD   79 (297)
T ss_dssp             CCCCEEEEEEETTT---TE-EEEEE-----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--------SCEECC
T ss_pred             CCcceeEEEEeCCC---Cc-eeeec-----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--------CceEec
Confidence            44567888998742   12 12222     5678899999999999999987 88999999988 5        122222


Q ss_pred             -CC-CCCeEEEEEcCCCCCEEEEec--CCCcEEEEeC--CCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCcEeC
Q 048199          423 -PT-RSKLSCLSWNKFSKNRIASSD--YEGIVTVWDV--TTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCKVLY  495 (495)
Q Consensus       423 -~~-~~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~v~l  495 (495)
                       .+ ...+.+++|+|+ +.+|++++  .++.+.||++  .++. ...+..+. .+..++|+| ++.+|+ +++.|+.++|
T Consensus        80 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l  155 (297)
T 2ojh_A           80 TGFATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDI  155 (297)
T ss_dssp             CTTCCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEE
T ss_pred             cccccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC-CCCEEEEEECCCCceEE
Confidence             22 356889999999 88888888  3355555554  4443 44454443 488999999 888776 7777886653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.96  E-value=7.4e-10  Score=115.80  Aligned_cols=105  Identities=13%  Similarity=-0.015  Sum_probs=89.7

Q ss_pred             EEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEEEE
Q 048199          380 SSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVTVW  453 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~iw  453 (495)
                      .++.|+|||+++++++.|    ..|++||+.++        .......+.+.+..++|+|| |..|++++.++  .|.+|
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g--------~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG--------GLRVFDSGEGSFSSASISPG-MKVTAGLETAREARLVTV  223 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC--------CCEEECCSSCEEEEEEECTT-SCEEEEEECSSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC--------CceEeecCCCccccceECCC-CCEEEEccCCCeeEEEEE
Confidence            789999999999988877    78999999886        23344456677899999999 88999888888  89999


Q ss_pred             eCCCCcceeecccccCcEEEEE--------eecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVD--------FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~--------~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+.++... .+.+|...+..++        |+| ||.++++++.|++++|
T Consensus       224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAV  271 (582)
T ss_dssp             CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEE
T ss_pred             cCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEE
Confidence            99988877 7788888887777        999 8899999999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.95  E-value=1.2e-10  Score=111.15  Aligned_cols=48  Identities=25%  Similarity=0.694  Sum_probs=43.4

Q ss_pred             cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.+++++.|+||++.+.+|+.+||||+ ||..|+.+|    ..||.||.++..
T Consensus       290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            556778999999999999999999999 999999998    579999998853

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.92  E-value=4.5e-09  Score=101.18  Aligned_cols=146  Identities=10%  Similarity=0.050  Sum_probs=95.1

Q ss_pred             cccCcccchh-hHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCC
Q 048199          337 HREGYNAGLA-DFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPA  413 (495)
Q Consensus       337 ~~~~~~~g~~-d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~  413 (495)
                      ++..+..+.. +..+.+|++.. ......+..+.     .+ ..+..++|+|++++|++++. ++.|.+||+..+.    
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~----  117 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL----  117 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE----
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc----
Confidence            3343444443 37889998741 12333444443     22 36889999999997766654 8899999995220    


Q ss_pred             CcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCC-Cccee----eccc-ccCcEEEEEeecCCCCeEEE
Q 048199          414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTT-QQSVM----EYEE-HEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~-~~~~~----~~~~-h~~~v~~v~~~~~~g~~l~s  486 (495)
                       .............+.+++|+|+ +.+|++++ .++.|.+||+.+ +....    .+.. ....+..++|+| ++.+|+.
T Consensus       118 -~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~  194 (343)
T 1ri6_A          118 -PVGVVDVVEGLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYC  194 (343)
T ss_dssp             -EEEEEEEECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEE
T ss_pred             -cccccccccCCCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEE
Confidence             0122333444556889999999 77666666 899999999987 54322    2222 234788999999 8886654


Q ss_pred             e-eCCCcEeC
Q 048199          487 G-SDDCKVLY  495 (495)
Q Consensus       487 ~-s~D~~v~l  495 (495)
                      + ..++.|++
T Consensus       195 ~~~~~~~i~~  204 (343)
T 1ri6_A          195 VNELNSSVDV  204 (343)
T ss_dssp             EETTTTEEEE
T ss_pred             EeCCCCEEEE
Confidence            4 47777753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.91  E-value=1e-08  Score=98.53  Aligned_cols=137  Identities=7%  Similarity=-0.013  Sum_probs=94.5

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..++++..+..+.+|+...   ...+..+.     .+...+ .++|+|+++++++++. ++.|.+||+.++       ..
T Consensus        11 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-------~~   74 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDT---LEILNQIT-----LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-------PP   74 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTT---CCEEEEEE-----CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-------SC
T ss_pred             EEEEEecCCCeEEEEeCcc---cceeeeEE-----ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-------ce
Confidence            3356777788999999742   22233333     234556 9999999996665554 899999999886       11


Q ss_pred             CeeecCCCCCeEE-EEEcCCCCCEEEEecCCC---cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCc
Q 048199          418 PVVEMPTRSKLSC-LSWNKFSKNRIASSDYEG---IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCK  492 (495)
Q Consensus       418 ~~~~~~~~~~i~~-~~~~p~~~~~l~sg~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~  492 (495)
                      ............. ++|+|+ +.+|+++..++   .|.+||+.+++.+..+..+ ....+++|+| +|.+|+ ++..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTT
T ss_pred             eEEecccCCCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCc
Confidence            1333333333444 999999 88888666553   8999999999888877654 4568999999 887554 4455566


Q ss_pred             -Ee
Q 048199          493 -VL  494 (495)
Q Consensus       493 -v~  494 (495)
                       |.
T Consensus       152 ~i~  154 (331)
T 3u4y_A          152 TVR  154 (331)
T ss_dssp             EEE
T ss_pred             eEE
Confidence             54

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.91  E-value=1.5e-10  Score=91.87  Aligned_cols=47  Identities=26%  Similarity=0.526  Sum_probs=0.4

Q ss_pred             ccccccccchhhhcc------------------ccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEAF------------------LTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv------------------~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +-.|+||++.|.+|.                  .++|||.||..||.+|+.....||.||+++..
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            357999999998752                  25899999999999999999999999998653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.90  E-value=2.3e-09  Score=114.97  Aligned_cols=139  Identities=8%  Similarity=-0.094  Sum_probs=96.9

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCC---cEEEEEEccCCCEEEEEeCC---------CcEEE
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN---IVSSIEFDRDDQLFATAGVS---------RRIKV  402 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~p~~~~l~s~s~d---------~~i~v  402 (495)
                      ..++..+.+ +.|+++.+|+.... +.  ...+.     +|..   .|.+++|+|||++|++++.+         +.|.+
T Consensus        25 spdg~~~~~-~~dg~i~~~d~~~g-~~--~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           25 ISDTEFIYR-EQKGTVRLWNVETN-TS--TVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGC-CC--EEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cCCCcEEEE-eCCCCEEEEECCCC-cE--EEEec-----cccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            344444443 56779999998532 21  22222     3443   49999999999999999875         67889


Q ss_pred             EEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcE----------
Q 048199          403 FDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA----------  471 (495)
Q Consensus       403 wd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v----------  471 (495)
                      ||+.++..      ..+.. ..+...+..++|+|| |..|+.++. +.|.+||+.++........+...+          
T Consensus        96 ~d~~~~~~------~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           96 SKIPHGDP------QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             EESSSCCC------EECCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             EECCCCce------EeccCCccccccccccEECCC-CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence            99988611      00111 123345888999999 888888875 799999999887766555443333          


Q ss_pred             --------EEEEeecCCCCeEEEeeCCC
Q 048199          472 --------WSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       472 --------~~v~~~~~~g~~l~s~s~D~  491 (495)
                              .+++|+| ||.+|++++.|+
T Consensus       168 ~ee~~~~~~~~~~Sp-Dg~~la~~~~~~  194 (723)
T 1xfd_A          168 EEEILKTHIAHWWSP-DGTRLAYAAIND  194 (723)
T ss_dssp             HHTTSSSSEEEEECT-TSSEEEEEEEEC
T ss_pred             EEEeccCcceEEECC-CCCEEEEEEECC
Confidence                    7899999 999999988653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.88  E-value=8.2e-09  Score=100.10  Aligned_cols=151  Identities=11%  Similarity=0.075  Sum_probs=96.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCc
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ++..+.++..+..+.+|++........+..+..    .....+..++|+|+|++++ ++..++.|.+|+++.....+.. 
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-  225 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM----EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-  225 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc----CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-
Confidence            444455566667888898752233232322221    1234678899999999555 4567899999999852000000 


Q ss_pred             CCCeeecC----CCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          416 HCPVVEMP----TRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       416 ~~~~~~~~----~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      ........    ....+..++|+|+ +.+| +++..++.|.+||+..   ...+..+..+...+..++|+| +|.+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~  303 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVV  303 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEE
Confidence            00000011    1245889999999 7765 5666789999999973   245566666667789999999 99988887


Q ss_pred             eCC-CcEe
Q 048199          488 SDD-CKVL  494 (495)
Q Consensus       488 s~D-~~v~  494 (495)
                      +.+ +.|.
T Consensus       304 ~~~~~~v~  311 (347)
T 3hfq_A          304 NQNTDNAT  311 (347)
T ss_dssp             ETTTTEEE
T ss_pred             EcCCCcEE
Confidence            754 6665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.86  E-value=5e-09  Score=112.67  Aligned_cols=105  Identities=7%  Similarity=-0.059  Sum_probs=80.9

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT  457 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~  457 (495)
                      .|.+++|+|||++|++++. +.|.+||+.++...     .......+...+..++|+|| +.+|+.++ ++.|.+||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCC
Confidence            4789999999999999886 99999999875100     11222345567999999999 88888887 56999999998


Q ss_pred             CcceeecccccCc----------------EEEEEeecCCCCeEEEeeCCC
Q 048199          458 QQSVMEYEEHEKR----------------AWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       458 ~~~~~~~~~h~~~----------------v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      +........+...                +.+++|+| ||.+|++++.|+
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~  230 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDE  230 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEEC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcC
Confidence            8766555444332                47899999 999999988765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.84  E-value=1.4e-08  Score=113.69  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCC----
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEG----  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg----  448 (495)
                      +|...+..++|+|+|++|++++.++.|++||+.++        ...... .|...+.+++|+|| +.+|++++.++    
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--------~~~~~~~~~~~~v~~~~~SpD-G~~la~~~~~~~~~~  446 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--------KPTVIERSREAMITDFTISDN-SRFIAYGFPLKHGET  446 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCCEEECTT-SCEEEEEEEECSSTT
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--------ceEEeccCCCCCccceEECCC-CCeEEEEecCccccc
Confidence            57788999999999999999999999999999886        222222 57778899999999 88888877654    


Q ss_pred             ------cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          449 ------IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       449 ------~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                            .|++||+.++. +..+..|...+..++|+| +|.+|++++.++.
T Consensus       447 ~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~  494 (1045)
T 1k32_A          447 DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSL  494 (1045)
T ss_dssp             CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCC
T ss_pred             cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccC
Confidence                  89999999877 777888988999999999 9999999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.83  E-value=3.2e-08  Score=95.73  Aligned_cols=141  Identities=11%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccc----cCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEccccccCCCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIF----HSANIVSSIEFDRDDQLFATAG--VSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~l~s~s--~d~~i~vwd~~~~~~~~~~  414 (495)
                      +..+..+..+.+|+...   ...+..+..+.-.    .....+.++.|+|++++++.++  .++.|.+||..++      
T Consensus       104 ~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------  174 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------  174 (353)
T ss_dssp             EEEETTTTEEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------
T ss_pred             EEEecCCCEEEEEeCCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------
Confidence            44555566888888742   2334444421100    0011278999999999777665  4889999999876      


Q ss_pred             cCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc----ccCcEEEEEeecCCCCeEEEeeC
Q 048199          415 VHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       415 ~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~----h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                        .....+. +...+.+++|+|+ +.+|++++.++.|.+||..+++.+..+..    +...+.+++|+| ++.+|+.++.
T Consensus       175 --~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~  250 (353)
T 3vgz_A          175 --KLKTAIQNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDS  250 (353)
T ss_dssp             --EEEEEECCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEES
T ss_pred             --ceEEEecCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeC
Confidence              2333333 4445788999999 88899999999999999999988777654    566788999999 8887666654


Q ss_pred             -CCcEe
Q 048199          490 -DCKVL  494 (495)
Q Consensus       490 -D~~v~  494 (495)
                       ++.|.
T Consensus       251 ~~~~v~  256 (353)
T 3vgz_A          251 KAAEVL  256 (353)
T ss_dssp             SSSEEE
T ss_pred             CCCEEE
Confidence             46664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.81  E-value=1.1e-08  Score=98.17  Aligned_cols=134  Identities=13%  Similarity=0.046  Sum_probs=94.6

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCC-cEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN-IVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ++++..+.++.+|+...   ...+..+..    ++.. .+..++|+|+++.+ ++++.++.|.+||+.++        ..
T Consensus         4 ~v~~~~~~~v~~~d~~~---~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------~~   68 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEK---MAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--------ET   68 (337)
T ss_dssp             EEEEETTTEEEEEETTT---TEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--------CE
T ss_pred             EEEcCCCCeEEEEECCC---CcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--------Ce
Confidence            45566777899998742   344444442    2222 47889999999755 56667899999999876        22


Q ss_pred             eeecCCC------CCeEEEEEcCCCCCEEEEec------------CCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199          419 VVEMPTR------SKLSCLSWNKFSKNRIASSD------------YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE  480 (495)
Q Consensus       419 ~~~~~~~------~~i~~~~~~p~~~~~l~sg~------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  480 (495)
                      +..+...      ..+..++|+|+ +.+|++++            .++.|.+||+.+++.+..+.. ...+..++|+| +
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-d  145 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-D  145 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-T
T ss_pred             EeeEEcCCcccccccccceEECCC-CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-C
Confidence            2222111      15678999999 87888775            579999999998888777764 45678899999 9


Q ss_pred             CCeEEEeeCCCcEe
Q 048199          481 PSMLVSGSDDCKVL  494 (495)
Q Consensus       481 g~~l~s~s~D~~v~  494 (495)
                      |.+|+++  ++.|+
T Consensus       146 g~~l~~~--~~~i~  157 (337)
T 1pby_B          146 GSKLYGL--GRDLH  157 (337)
T ss_dssp             SSCEEEE--SSSEE
T ss_pred             CCEEEEe--CCeEE
Confidence            9888877  45554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.79  E-value=2e-08  Score=107.97  Aligned_cols=107  Identities=10%  Similarity=0.061  Sum_probs=84.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeC-CC-----cEEEEEccccccCCCCcCCCeeecC-C--C---------------------
Q 048199          376 ANIVSSIEFDRDDQLFATAGV-SR-----RIKVFDFASVVNEPADVHCPVVEMP-T--R---------------------  425 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~-d~-----~i~vwd~~~~~~~~~~~~~~~~~~~-~--~---------------------  425 (495)
                      ...|.+++|+|||++|++++. |+     +|++||+.++.        ...... +  .                     
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--------TRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--------EEEEECGGGTC--------------------C
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--------eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            356899999999999999998 88     89999998861        111111 1  1                     


Q ss_pred             -CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          426 -SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       426 -~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       ..+.+++|+|| +.+|++++. +.|.+||+.++.  .+..+..|...+..++|+| ||.+|++++. +.|+
T Consensus       108 ~~~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~  175 (741)
T 2ecf_A          108 MTGIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLW  175 (741)
T ss_dssp             CEESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEE
T ss_pred             ccCcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEE
Confidence             23788999999 888888876 999999999873  5566778888999999999 9999999885 3554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.78  E-value=3.7e-08  Score=96.00  Aligned_cols=145  Identities=8%  Similarity=0.051  Sum_probs=92.8

Q ss_pred             cccchhhHHhhhhhhhcccC------ceEE---EEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEcccccc
Q 048199          341 YNAGLADFQSVLTTFTRYSR------LRVI---AELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVN  410 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~------~~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~  410 (495)
                      +..+..+..+.+|++.....      +...   .....    .+...+..++|+|+|+++++++ .++.|.+||+.++..
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            34555566788887753221      2111   11111    3345678999999999777666 689999999986510


Q ss_pred             CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCC--CCc--ceeecccccCcEEEEEeecCCCCeE
Q 048199          411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVT--TQQ--SVMEYEEHEKRAWSVDFSRTEPSML  484 (495)
Q Consensus       411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~g~~l  484 (495)
                      .  ..........+...+..++|+|| +.+|+++..  ++.|.+||+.  ++.  .+..+.. ...+..++|+| +|.+|
T Consensus       246 ~--~~~~~~~~~~~~~~~~~i~~spd-g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l  320 (361)
T 3scy_A          246 D--EIQTVAADTVNAQGSGDIHLSPD-GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYL  320 (361)
T ss_dssp             E--EEEEEESCSSCCCCEEEEEECTT-SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEE
T ss_pred             E--EeEEEecCCCCCCCcccEEECCC-CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEE
Confidence            0  00000001123345789999999 777766554  4899999996  344  3444444 45788999999 99988


Q ss_pred             EEee-CCCcEe
Q 048199          485 VSGS-DDCKVL  494 (495)
Q Consensus       485 ~s~s-~D~~v~  494 (495)
                      ++++ .++.|.
T Consensus       321 ~~~~~~~~~v~  331 (361)
T 3scy_A          321 LVACRDTNVIQ  331 (361)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCCEE
Confidence            8887 566665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.78  E-value=6e-09  Score=111.71  Aligned_cols=128  Identities=13%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCC---cEEEEEEccCCCEEEEEeC---------CCcEEEEEccccccC
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN---IVSSIEFDRDDQLFATAGV---------SRRIKVFDFASVVNE  411 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~  411 (495)
                      ...|.++.+|+... .  .....+.     +|..   .|.+++|+|||++|++++.         |++|++||+.++.. 
T Consensus        32 ~~~d~~i~~~~~~~-g--~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~-  102 (719)
T 1z68_A           32 QSADNNIVLYNIET-G--QSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF-  102 (719)
T ss_dssp             ECTTSCEEEEESSS-C--CEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-
T ss_pred             EcCCCCEEEEEcCC-C--cEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc-
Confidence            33577888998742 1  2222222     2222   4889999999999998876         78999999988721 


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcE-----------------EE
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRA-----------------WS  473 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v-----------------~~  473 (495)
                             +........+..++|+|| |..|+.+. ++.|++||+.++...... .++...|                 .+
T Consensus       103 -------~~~~~l~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          103 -------VRGNELPRPIQYLCWSPV-GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             -------CCSSCCCSSBCCEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             -------ccceecCcccccceECCC-CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence                   000011245788999999 88888875 789999999887765432 2333322                 48


Q ss_pred             EEeecCCCCeEEEeeCC
Q 048199          474 VDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       474 v~~~~~~g~~l~s~s~D  490 (495)
                      ++|+| ||.+|++++.|
T Consensus       174 ~~wSP-DG~~la~~~~d  189 (719)
T 1z68_A          174 LWWSP-NGKFLAYAEFN  189 (719)
T ss_dssp             EEECT-TSSEEEEEEEE
T ss_pred             EEECC-CCCEEEEEEEC
Confidence            99999 99999998865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.77  E-value=3.8e-08  Score=101.80  Aligned_cols=143  Identities=9%  Similarity=0.049  Sum_probs=104.4

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc----CCCEEEEEe-CCCcEEEEEcccccc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR----DDQLFATAG-VSRRIKVFDFASVVN  410 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p----~~~~l~s~s-~d~~i~vwd~~~~~~  410 (495)
                      .++..+..++.|.++.+||+.. .....+..+..      ...++.++|+|    +|+++++++ .+++|.|||..+.  
T Consensus       188 pdg~~l~v~~~d~~V~v~D~~~-~t~~~~~~i~~------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~--  258 (543)
T 1nir_A          188 ASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKI------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL--  258 (543)
T ss_dssp             TTSCEEEEEETTSEEEEEETTS-SSCEEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC--
T ss_pred             CCCCEEEEECCCCeEEEEECcC-CCCcEEEEEec------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc--
Confidence            4555667777778999999821 12344555542      34689999999    999998887 4899999998875  


Q ss_pred             CCCCcCCCeeec------------CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee--ecccccCcEEEEEe
Q 048199          411 EPADVHCPVVEM------------PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM--EYEEHEKRAWSVDF  476 (495)
Q Consensus       411 ~~~~~~~~~~~~------------~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~  476 (495)
                            .++..+            .....+.++.|+|+++.++++...++.|.+||..++..+.  .+ .+...+..++|
T Consensus       259 ------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~  331 (543)
T 1nir_A          259 ------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGW  331 (543)
T ss_dssp             ------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEE
T ss_pred             ------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceE
Confidence                  111111            1233789999999867788899999999999998876544  44 46677889999


Q ss_pred             ecCCCCeEEEe-eCCCcEeC
Q 048199          477 SRTEPSMLVSG-SDDCKVLY  495 (495)
Q Consensus       477 ~~~~g~~l~s~-s~D~~v~l  495 (495)
                      +| +|.+|+++ ..|++|.+
T Consensus       332 sp-dg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          332 DS-SHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             CT-TSCEEEEEEGGGTEEEE
T ss_pred             CC-CCCEEEEEecCCCeEEE
Confidence            99 98876654 45777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.76  E-value=5.2e-08  Score=94.38  Aligned_cols=135  Identities=10%  Similarity=-0.005  Sum_probs=89.2

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecC--
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMP--  423 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~--  423 (495)
                      +..+.+|++.. .....+..+.     .|...+..++|+|+|++|++++ .+++|.+|++.....     ...+....  
T Consensus        62 ~~~v~~~~~~~-g~~~~~~~~~-----~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~  130 (347)
T 3hfq_A           62 EGGIAAWQIDG-QTAHKLNTVV-----APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHS  130 (347)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEE-----EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECC
T ss_pred             CceEEEEEecC-CcEEEeeeee-----cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecC
Confidence            56788888731 2223333332     4566788999999999888877 789999999964200     01111111  


Q ss_pred             --------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcce--eecccc-cCcEEEEEeecCCCCeEEE-eeCC
Q 048199          424 --------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSV--MEYEEH-EKRAWSVDFSRTEPSMLVS-GSDD  490 (495)
Q Consensus       424 --------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~--~~~~~h-~~~v~~v~~~~~~g~~l~s-~s~D  490 (495)
                              ....+.+++|+|+ +.+++++..++.|.+||+. ++...  ..+..+ ...+..++|+| +|.+|+. +..+
T Consensus       131 ~~~p~~~~~~~~~~~~~~spd-g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~  208 (347)
T 3hfq_A          131 GHGPRPEQDGSHIHYTDLTPD-NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELS  208 (347)
T ss_dssp             CCCSSTTCSSCCEEEEEECTT-SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred             CCCCCccccCCCceEEEECCC-CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCC
Confidence                    1235889999999 6688888888999999998 45432  222222 23677899999 9986655 4556


Q ss_pred             CcEe
Q 048199          491 CKVL  494 (495)
Q Consensus       491 ~~v~  494 (495)
                      +.|+
T Consensus       209 ~~v~  212 (347)
T 3hfq_A          209 SQIA  212 (347)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            6664

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=3.2e-09  Score=78.40  Aligned_cols=50  Identities=18%  Similarity=0.432  Sum_probs=42.2

Q ss_pred             CCccccccccchhh--hccccCCC-----CccchhhHHhhhcCC--CCCCCCCCcCccC
Q 048199           50 DKDMLCPICMQIIK--EAFLTACG-----HSFCYMCIITHLRNK--SDCPCCGHYLTNN   99 (495)
Q Consensus        50 ~~~l~C~IC~~~~~--~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~   99 (495)
                      .++..|+||++.|.  +++++||.     |.|+..||.+|+...  .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            34567999999884  67888996     999999999999876  4899999998753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.70  E-value=9.2e-08  Score=91.75  Aligned_cols=139  Identities=9%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEccccccCCCCcCC
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR---RIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~  417 (495)
                      +..+..+..+.+|+... .+. ....+.     .+...+.+++|+|++++++++..++   .|.+||+.++        .
T Consensus        55 ~~~~~~~~~i~~~d~~~-~~~-~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--------~  119 (331)
T 3u4y_A           55 VVTSDFCQTLVQIETQL-EPP-KVVAIQ-----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--------K  119 (331)
T ss_dssp             EEEESTTCEEEEEECSS-SSC-EEEEEE-----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--------E
T ss_pred             EEEeCCCCeEEEEECCC-Cce-eEEecc-----cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--------C
Confidence            34444466777887742 221 133333     3445555599999999988555553   8999999876        3


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCccee----ecccccCcEEEEEeecCCCCeE-EEeeCCC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVM----EYEEHEKRAWSVDFSRTEPSML-VSGSDDC  491 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~----~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~  491 (495)
                      .+..+.....+.+++|+|++..+++++..++. |.+||+.....+.    ....+...+..++|+| +|.+| +++..++
T Consensus       120 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~  198 (331)
T 3u4y_A          120 FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGN  198 (331)
T ss_dssp             EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTT
T ss_pred             eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCC
Confidence            33344455667999999993345566666688 9999987543321    1112345678999999 88855 5555677


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|++
T Consensus       199 ~v~v  202 (331)
T 3u4y_A          199 SIGI  202 (331)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.70  E-value=2.3e-08  Score=107.67  Aligned_cols=143  Identities=10%  Similarity=0.032  Sum_probs=94.4

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---------CcEEEEE
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---------RRIKVFD  404 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---------~~i~vwd  404 (495)
                      +..++..+.++  |+++.+|++.. .+  ....+....+..+.....++.|+|||++|+.++.+         +.+.+||
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEY-GN--SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTT-CC--EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ECCCCcEEEEc--CCcEEEEECCC-Cc--eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            33445555554  77899999743 22  22223321111222334568999999999998876         4566999


Q ss_pred             ccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-ecccccCcE------------
Q 048199          405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-EYEEHEKRA------------  471 (495)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~~~~h~~~v------------  471 (495)
                      +.++        .......+...+...+|+|| |..|+.+. |+.|.+||+.++.... +..++...+            
T Consensus        99 ~~~~--------~~~~l~~~~~~~~~~~~SPd-G~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           99 LNKR--------QLITEERIPNNTQWVTWSPV-GHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             TTTT--------EECCSSCCCTTEEEEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             CCCC--------cEEEcccCCCcceeeEECCC-CCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence            9987        11222345667999999999 88888774 7899999998876543 223333322            


Q ss_pred             -----EEEEeecCCCCeEEEeeCCCc
Q 048199          472 -----WSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       472 -----~~v~~~~~~g~~l~s~s~D~~  492 (495)
                           .++.||| ||.+||.++.|.+
T Consensus       169 ~~~~~~~~~wSp-Dg~~la~~~~d~~  193 (740)
T 4a5s_A          169 VFSAYSALWWSP-NGTFLAYAQFNDT  193 (740)
T ss_dssp             TSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred             hcCCCcceEECC-CCCEEEEEEEccc
Confidence                 2489999 9999999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.69  E-value=8.5e-08  Score=92.69  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=93.7

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeeecC--
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--  423 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--  423 (495)
                      +..+.+|+...   ...+..+..      ...+.+++|+|++++ ++++..++.|.+||..++        ..+..+.  
T Consensus        68 ~~~v~~~d~~~---~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~  130 (353)
T 3vgz_A           68 GGVVYRLDPVT---LEVTQAIHN------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--------EVKGRLVLD  130 (353)
T ss_dssp             SEEEEEECTTT---CCEEEEEEE------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--------CEEEEEESC
T ss_pred             CccEEEEcCCC---CeEEEEEec------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--------eeEEEEecC
Confidence            45788888742   233444432      234678999999984 555666899999999886        1111111  


Q ss_pred             CC--------CCeEEEEEcCCCCCEEEEec--CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          424 TR--------SKLSCLSWNKFSKNRIASSD--YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       424 ~~--------~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ..        ..+.++.|+|+ +.+++.++  .++.|.+||..+++.+..+..+...+.+++|+| ++.+|++++.|+.|
T Consensus       131 ~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i  208 (353)
T 3vgz_A          131 DRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGEL  208 (353)
T ss_dssp             CCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEE
T ss_pred             CCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeE
Confidence            11        12789999999 66666655  478999999999998888876666788999999 99999999888877


Q ss_pred             e
Q 048199          494 L  494 (495)
Q Consensus       494 ~  494 (495)
                      .
T Consensus       209 ~  209 (353)
T 3vgz_A          209 I  209 (353)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.68  E-value=1.7e-08  Score=108.04  Aligned_cols=106  Identities=11%  Similarity=0.013  Sum_probs=79.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC------------------CeEEEEEcC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS------------------KLSCLSWNK  435 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~p  435 (495)
                      +|...|..++|+|||+.|++++. +.|++||+.++.       .......+..                  .+.++.|+|
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence            45566899999999999999885 799999998761       1111111111                  337899999


Q ss_pred             CCCCEEEEecCCC----------------------------------cEEEEeCCCCcceeecccc------cCcEEEEE
Q 048199          436 FSKNRIASSDYEG----------------------------------IVTVWDVTTQQSVMEYEEH------EKRAWSVD  475 (495)
Q Consensus       436 ~~~~~l~sg~~dg----------------------------------~v~iwd~~~~~~~~~~~~h------~~~v~~v~  475 (495)
                      | +..|++++.|+                                  .|.+||+.++.....+..+      ...+..++
T Consensus       183 D-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  261 (723)
T 1xfd_A          183 D-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (723)
T ss_dssp             T-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             C-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE
Confidence            9 88888877553                                  7999999988765666554      67899999


Q ss_pred             eecCCCCeEEEeeC
Q 048199          476 FSRTEPSMLVSGSD  489 (495)
Q Consensus       476 ~~~~~g~~l~s~s~  489 (495)
                      |+| ||.+|++.+.
T Consensus       262 ~Sp-Dg~~l~~~~~  274 (723)
T 1xfd_A          262 WAT-STKVAVTWLN  274 (723)
T ss_dssp             ESS-SSEEEEEEEE
T ss_pred             EeC-CCeEEEEEEc
Confidence            999 9998877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.68  E-value=3.7e-08  Score=105.30  Aligned_cols=133  Identities=12%  Similarity=0.028  Sum_probs=90.4

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-----cccC-C-CCcCCCe
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-----VVNE-P-ADVHCPV  419 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-----~~~~-~-~~~~~~~  419 (495)
                      +..+.+|++..   .. ...+.     .+...+.+++|+|+|+.|+++ .|+.|++||+.+     +... + ......+
T Consensus       100 ~~~i~~~d~~~---~~-~~~l~-----~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A          100 QGGLVGFDMLA---RK-VTYLF-----DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             TTEEEEEETTT---TE-EEEEE-----CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             CCEEEEEECCC---Cc-eEEcc-----CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            46788888742   12 22222     445678899999999999885 689999999987     5110 0 0000000


Q ss_pred             e-----ecCCCCCeEEEEEcCCCCCEEEEec---------------------------------CCCcEEEEeCCCCcce
Q 048199          420 V-----EMPTRSKLSCLSWNKFSKNRIASSD---------------------------------YEGIVTVWDVTTQQSV  461 (495)
Q Consensus       420 ~-----~~~~~~~i~~~~~~p~~~~~l~sg~---------------------------------~dg~v~iwd~~~~~~~  461 (495)
                      .     ...+...+.++.|+|| +.+|++++                                 .+..|.+||+.++...
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~  248 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV  248 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred             EcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence            0     0001122578999999 88888887                                 4467999999988765


Q ss_pred             eecc--cccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          462 MEYE--EHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       462 ~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ....  .|...+..++|+| ||.+|++++.|+
T Consensus       249 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~  279 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSP-DENILYVAEVNR  279 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECT-TSSEEEEEEECT
T ss_pred             eeccCCCCceeEeeEEEEC-CCCEEEEEEeCC
Confidence            4442  5777899999999 999999887664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.66  E-value=3.2e-07  Score=89.33  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             CCcEEEEEEccCCCEEEEE-eCCCcEEEEEcccccc----C-CCCc-CCCeeecCCCCCeEEEEEcCCCCCEEEEec-CC
Q 048199          376 ANIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVN----E-PADV-HCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YE  447 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~----~-~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~d  447 (495)
                      ...+.+++|+|+|++++.+ ..++.|.+|++.....    . +... ............+..++|+|+ +.+++.++ .+
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~  232 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIG  232 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTT
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCC
Confidence            4457889999999966554 4589999999986511    0 1000 001223345567889999999 77666655 68


Q ss_pred             CcEEEEeCCCCcc--eeec---ccccCcEEEEEeecCCCCeEEEeeCC--CcEe
Q 048199          448 GIVTVWDVTTQQS--VMEY---EEHEKRAWSVDFSRTEPSMLVSGSDD--CKVL  494 (495)
Q Consensus       448 g~v~iwd~~~~~~--~~~~---~~h~~~v~~v~~~~~~g~~l~s~s~D--~~v~  494 (495)
                      +.|.+||+.++..  +..+   ..+...+..++|+| +|.+|+++..+  +.|.
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVA  285 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEE
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEE
Confidence            9999999987643  2222   33445578999999 99988666554  6665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.64  E-value=5.6e-08  Score=93.76  Aligned_cols=133  Identities=6%  Similarity=-0.036  Sum_probs=90.7

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ...++++..+.++.+|+...   ...+..+..    ++...+..++|+|+++++ +++..++.|.+||+.++        
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--------   75 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVAS---DTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--------   75 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTT---TEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred             CEEEEEeCCCCeEEEEECCC---CcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--------
Confidence            34566777788999999742   334444442    222257789999999855 56667899999999876        


Q ss_pred             CCeeec--CC-----CCCeEEEEEcCCCCCEEEEecCC------------CcEEEEeCCCCcce---eecccccCcEEEE
Q 048199          417 CPVVEM--PT-----RSKLSCLSWNKFSKNRIASSDYE------------GIVTVWDVTTQQSV---MEYEEHEKRAWSV  474 (495)
Q Consensus       417 ~~~~~~--~~-----~~~i~~~~~~p~~~~~l~sg~~d------------g~v~iwd~~~~~~~---~~~~~h~~~v~~v  474 (495)
                      .....+  .+     ...+..++|+|+ +.+|++++.+            +.|.+||+.++...   ..+. +...+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~  153 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM  153 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred             cEEEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence            122222  11     123678999999 8888888765            89999999885443   3333 33468899


Q ss_pred             EeecCCCCeEEEeeC
Q 048199          475 DFSRTEPSMLVSGSD  489 (495)
Q Consensus       475 ~~~~~~g~~l~s~s~  489 (495)
                      +|+| +|. ++.++.
T Consensus       154 ~~s~-dg~-l~~~~~  166 (349)
T 1jmx_B          154 RAAD-DGS-LYVAGP  166 (349)
T ss_dssp             EECT-TSC-EEEESS
T ss_pred             eECC-CCc-EEEccC
Confidence            9999 888 555544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.64  E-value=7.9e-08  Score=92.12  Aligned_cols=110  Identities=10%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe------------CCCcEEEEEcccc
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG------------VSRRIKVFDFASV  408 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s------------~d~~i~vwd~~~~  408 (495)
                      +.++..+..+.+|+...   ...+..+..+....|...+.+++|+|+++++++++            .++.|.+||+.++
T Consensus        49 ~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B           49 YATVNKSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             EEEETTTTEEEEEETTT---CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             EEEeCCCCeEEEEECCC---CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC
Confidence            34555667888888742   23333343211000223567899999999888876            5799999999875


Q ss_pred             ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199          409 VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~  464 (495)
                              .....+.....+.+++|+|+ +.+|+++  ++.|.+||+.+++.+..+
T Consensus       126 --------~~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~  170 (337)
T 1pby_B          126 --------SRRKAFEAPRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             --------EEEEEEECCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred             --------cEEEEEeCCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeee
Confidence                    22233333456788999999 7777777  688999999877655433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.62  E-value=9.6e-08  Score=106.85  Aligned_cols=107  Identities=7%  Similarity=-0.027  Sum_probs=90.4

Q ss_pred             cCCC-cEEEEEEccCCCEEEEEeCCCcEE-EEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          374 HSAN-IVSSIEFDRDDQLFATAGVSRRIK-VFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       374 ~h~~-~V~~l~~~p~~~~l~s~s~d~~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      .|.. .+..+.|+ +|+.|++++.+..+. +||+..+        .......+...+..++|+|| +.+|++++.++.|+
T Consensus       334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--------~~~~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~  403 (1045)
T 1k32_A          334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--------KAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIM  403 (1045)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--------CEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEE
T ss_pred             CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--------CceEecCCccceeeeEECCC-CCEEEEECCCCeEE
Confidence            5666 89999999 999999998888888 8898765        22222256678999999999 99999999999999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      +||+.++.....+.+|...+.+++|+| ||.+|++++.++
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~  442 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLK  442 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEEC
T ss_pred             EEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCc
Confidence            999999988888878999999999999 999998887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.60  E-value=5.6e-07  Score=84.44  Aligned_cols=137  Identities=10%  Similarity=0.184  Sum_probs=95.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+++...+..+.+|+..  .  ..+..+...   ++...+.+|+++|+++++++...++.|++||....         .
T Consensus       133 ~l~v~~~~~~~i~~~~~~--g--~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------~  196 (286)
T 1q7f_A          133 RIIVVECKVMRVIIFDQN--G--NVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------Y  196 (286)
T ss_dssp             CEEEEETTTTEEEEECTT--S--CEEEEEECT---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------E
T ss_pred             CEEEEECCCCEEEEEcCC--C--CEEEEeCCC---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------E
Confidence            334444445566677642  1  222233210   34567899999999998888888999999997543         1


Q ss_pred             eeecC---CCCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCCCcceeecccccC--cEEEEEeecCCCCeEEEeeCCCc
Q 048199          419 VVEMP---TRSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTTQQSVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       419 ~~~~~---~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      +..+.   +...+..++++++ +.++++...++ .|.+||. ++..+..+..+..  .+.+++|+| +|.++++ +.|++
T Consensus       197 ~~~~~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~  272 (286)
T 1q7f_A          197 LRQIGGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYR  272 (286)
T ss_dssp             EEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTE
T ss_pred             EEEEccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCe
Confidence            22222   2256899999999 88888888776 9999995 5777777766543  478999999 9987777 57888


Q ss_pred             EeC
Q 048199          493 VLY  495 (495)
Q Consensus       493 v~l  495 (495)
                      |++
T Consensus       273 v~v  275 (286)
T 1q7f_A          273 LYI  275 (286)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.59  E-value=4.8e-08  Score=101.99  Aligned_cols=132  Identities=11%  Similarity=-0.030  Sum_probs=93.6

Q ss_pred             ccccCcccchhh----HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC--cEEEEEccccc
Q 048199          336 IHREGYNAGLAD----FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR--RIKVFDFASVV  409 (495)
Q Consensus       336 ~~~~~~~~g~~d----~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~--~i~vwd~~~~~  409 (495)
                      +++..++.++.+    ..+.+|++.. .+   ...+.     +|.+.+.+++|+|||+.|+++..++  .|++||+.++ 
T Consensus       159 pDG~~la~~~~~~~~~~~i~~~d~~~-g~---~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-  228 (582)
T 3o4h_A          159 IRGDLIAGLGFFGGGRVSLFTSNLSS-GG---LRVFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-  228 (582)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEETTT-CC---CEEEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-
T ss_pred             CCCCEEEEEEEcCCCCeEEEEEcCCC-CC---ceEee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-
Confidence            445555544444    4566666532 11   12222     6788899999999999999888888  8999999876 


Q ss_pred             cCCCCcCCCeeecCCCCCeEEEE--------EcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199          410 NEPADVHCPVVEMPTRSKLSCLS--------WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~~--------~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                             .......+...+..+.        |+|| +.++++++.||+++||++  |+.+.   .+.+.|.+++|+  ++
T Consensus       229 -------~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg  293 (582)
T 3o4h_A          229 -------SVEDLELPSKDFSSYRPTAITWLGYLPD-GRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RG  293 (582)
T ss_dssp             -------CEEECCCSCSHHHHHCCSEEEEEEECTT-SCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TT
T ss_pred             -------cEEEccCCCcChhhhhhccccceeEcCC-CcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CC
Confidence                   1222223444455555        9999 699999999999999999  66554   234678999999  77


Q ss_pred             CeEEEeeCCCc
Q 048199          482 SMLVSGSDDCK  492 (495)
Q Consensus       482 ~~l~s~s~D~~  492 (495)
                      .++++++.+.+
T Consensus       294 ~~l~~~s~~~~  304 (582)
T 3o4h_A          294 KLVTSHTSLST  304 (582)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEcCCCC
Confidence            88888887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.57  E-value=1.6e-07  Score=99.46  Aligned_cols=108  Identities=6%  Similarity=-0.078  Sum_probs=83.5

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCC----------CcEEEEEccc------cccCCCCcCCCeeec-CCCCCeEEEEEcCCC
Q 048199          375 SANIVSSIEFDRDDQLFATAGVS----------RRIKVFDFAS------VVNEPADVHCPVVEM-PTRSKLSCLSWNKFS  437 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d----------~~i~vwd~~~------~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~  437 (495)
                      |...+.+++|+|||+.|++++.|          ..|.+||+.+      +        ...... .+...+..++|+|| 
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~SpD-  198 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS--------AVRELSDDAHRFVTGPRLSPD-  198 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--------GSEESSCSCSSEECCCEECTT-
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--------ceeEEEecCCCcccCceECCC-
Confidence            66788999999999999988877          5899999987      4        122222 34456778999999 


Q ss_pred             CCEEEEecCC--------CcEEEEeCC-CC---cceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          438 KNRIASSDYE--------GIVTVWDVT-TQ---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       438 ~~~l~sg~~d--------g~v~iwd~~-~~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      |.+|+.++.+        ..|.+||+. ++   .......+|...+..+.|+| ||.++++++.|+.
T Consensus       199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~  264 (662)
T 3azo_A          199 GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW  264 (662)
T ss_dssp             SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred             CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence            8888877655        379999998 56   44444455678899999999 9998888888874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.56  E-value=4.1e-08  Score=105.19  Aligned_cols=109  Identities=7%  Similarity=-0.039  Sum_probs=76.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CC-CcCCCeeecCCC---------CCeEEEEEcCCCCCEEEEec
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PA-DVHCPVVEMPTR---------SKLSCLSWNKFSKNRIASSD  445 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~-~~~~~~~~~~~~---------~~i~~~~~~p~~~~~l~sg~  445 (495)
                      ..+..++|+|||+.|++++ |+.|++||+.++... +. .........++.         ....+++|+|| |..|++++
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~  187 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAE  187 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEE
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEE
Confidence            4588999999999999886 889999999876110 00 000000011111         11258999999 88998887


Q ss_pred             CCC----------------------------------cEEEEeCCCCcce--------eecccccCcEEEEEeecCCCCe
Q 048199          446 YEG----------------------------------IVTVWDVTTQQSV--------MEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       446 ~dg----------------------------------~v~iwd~~~~~~~--------~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      .|.                                  .|.+||+.++...        ..+.+|...+..++|+| |+.+
T Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~  266 (719)
T 1z68_A          188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERV  266 (719)
T ss_dssp             EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEE
T ss_pred             ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeE
Confidence            652                                  7889999987653        33557888999999999 8877


Q ss_pred             EEEee
Q 048199          484 LVSGS  488 (495)
Q Consensus       484 l~s~s  488 (495)
                      +++..
T Consensus       267 ~~~~~  271 (719)
T 1z68_A          267 CLQWL  271 (719)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77744

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.56  E-value=9.7e-08  Score=92.05  Aligned_cols=100  Identities=9%  Similarity=0.030  Sum_probs=76.6

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC--CeEEEEEcCCCCC-EEEEecCCCcEEEEeCCC
Q 048199          381 SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS--KLSCLSWNKFSKN-RIASSDYEGIVTVWDVTT  457 (495)
Q Consensus       381 ~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~  457 (495)
                      ++++++++.++++++.+++|.+||+.++        .....+....  .+..++|+|+ +. +++++..++.|.+||+.+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCC
Confidence            4567888999999999999999999886        2222222222  5789999999 65 456677889999999999


Q ss_pred             Ccceeeccccc------CcEEEEEeecCCCCeEEEeeCC
Q 048199          458 QQSVMEYEEHE------KRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       458 ~~~~~~~~~h~------~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ++.+..+..+.      ..+..++|+| +|.+|++++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~  112 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNP  112 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEE
T ss_pred             CcEEEEEEcccccccccccccceEECC-CCCEEEEEccc
Confidence            88877665322      2378899999 99999988855

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.51  E-value=6.1e-07  Score=87.77  Aligned_cols=100  Identities=10%  Similarity=0.010  Sum_probs=78.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      +.+ |+.|+|  ++.+|+++ .++.|++||+.+..       .......+...+.++.+.+.   .++.++.||.|.+||
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~d  152 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALD  152 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-------CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-------ccCccceeecceeeEEecCC---CEEEEECCCCEEEEE
Confidence            445 999999  88999888 88999999998861       11122344556888887754   388889999999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.++....    +...|.+++|+| +|  ++.|..||+|++
T Consensus       153 l~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~  186 (388)
T 1xip_A          153 LRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             TTTCCEEE----EEESEEEEEECS-SE--EEEEETTSCEEE
T ss_pred             ccCCcccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEE
Confidence            99776543    556899999999 88  778889998863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.49  E-value=3.3e-07  Score=89.61  Aligned_cols=145  Identities=8%  Similarity=0.018  Sum_probs=89.8

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCE--EEEEe-------------CCCcEE
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQL--FATAG-------------VSRRIK  401 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--l~s~s-------------~d~~i~  401 (495)
                      ++..+..+..+ .+.+|++....+...+....     .+ +.+..++|+|+|++  +++++             .++++.
T Consensus        50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-----~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-----IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-----CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             CCCEEEEEccc-eEEEEEECCCCCEEEeeEee-----cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            33434445444 78888874112211111111     11 22456889999994  45553             689999


Q ss_pred             EEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCC-CCcce--eecc--cccCcEEE
Q 048199          402 VFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVT-TQQSV--MEYE--EHEKRAWS  473 (495)
Q Consensus       402 vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~-~~~~~--~~~~--~h~~~v~~  473 (495)
                      +|++.....    ....+..+  .+...+.+++|+|+ +.+|++++ .++.|.+||+. +++..  ..+.  .|...+..
T Consensus       123 v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          123 VFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             EEEECTTCC----EEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             EEccCCCCc----CcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            999974200    00111111  24567999999999 77777665 46799999998 67542  3333  24567899


Q ss_pred             EEeecCCCCeEEEeeC-CCcEe
Q 048199          474 VDFSRTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       474 v~~~~~~g~~l~s~s~-D~~v~  494 (495)
                      ++|+| +|.+|++++. ++.|.
T Consensus       198 ~~~sp-dg~~l~v~~~~~~~v~  218 (365)
T 1jof_A          198 VAMHP-TGNYLYALMEAGNRIC  218 (365)
T ss_dssp             EEECT-TSSEEEEEETTTTEEE
T ss_pred             eEECC-CCCEEEEEECCCCeEE
Confidence            99999 9998887764 56664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.46  E-value=3.6e-07  Score=97.54  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=79.5

Q ss_pred             cCCCcEEEEEEccCCCEEE-----EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199          374 HSANIVSSIEFDRDDQLFA-----TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~-----s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      +|...+.+++|+|||++|+     +|+.+.+|++||+.++...     . ..... ......++|+|| +..|+.++.|.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~-~~~~~-~~~~~~~~wspD-g~~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----K-VDVIE-GGKYATPKWTPD-SKGFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----S-SCCBS-CCTTCCCEECTT-SSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----C-CcccC-cccccceEEecC-CCEEEEEEecC
Confidence            4666789999999999988     4444578999999987211     0 00111 112267899999 88888888877


Q ss_pred             c-------------EEEEeCCCCc----ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          449 I-------------VTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       449 ~-------------v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      .             |++|++.++.    .+....+|...+.++.|+| ||.+|+.++.++
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~  248 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG  248 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence            6             9999998876    3334445667889999999 999888877655

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.46  E-value=2.7e-07  Score=98.49  Aligned_cols=100  Identities=10%  Similarity=-0.051  Sum_probs=77.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ..|.+++|+|+ ..++.+ .|++|++||+.++        .......+...+.+++|+|| +..|+++ .|+.|.+||+.
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~Spd-G~~la~~-~~~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--------KVTYLFDTNEETASLDFSPV-GDRVAYV-RNHNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--------EEEEEECCTTCCTTCEECTT-SSEEEEE-ETTEEEEEECB
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--------ceEEccCCcccccCCcCCCC-CCEEEEE-ECCeEEEEecC
Confidence            56999999999 655554 3699999999876        22333445567888999999 8888885 68999999999


Q ss_pred             C-----CcceeecccccCc--------------EEEEEeecCCCCeEEEeeC
Q 048199          457 T-----QQSVMEYEEHEKR--------------AWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       457 ~-----~~~~~~~~~h~~~--------------v~~v~~~~~~g~~l~s~s~  489 (495)
                      +     +........+...              +.++.|+| ||.+|++++.
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~  200 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM  200 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence            8     7766555444433              48899999 9999999883

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.43  E-value=4.2e-07  Score=88.92  Aligned_cols=130  Identities=9%  Similarity=0.047  Sum_probs=94.9

Q ss_pred             ccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc
Q 048199          330 ESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV  409 (495)
Q Consensus       330 ~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~  409 (495)
                      +....+ ++..+..+ .++.+.+|++..+....   ...     .|...|.++.+.+.  .++++..||+|.+||+..+ 
T Consensus        90 V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~---~~~-----~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-  156 (388)
T 1xip_A           90 VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFR---TVT-----SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-  156 (388)
T ss_dssp             EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEE---EEE-----ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-
T ss_pred             eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccC---ccc-----eeecceeeEEecCC--CEEEEECCCCEEEEEccCC-
Confidence            334444 66666666 77889999986554322   222     44566888877654  3888999999999999876 


Q ss_pred             cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeec------c---cccCcEEEEEeec
Q 048199          410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEY------E---EHEKRAWSVDFSR  478 (495)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~------~---~h~~~v~~v~~~~  478 (495)
                             ...   .+...|.+++|+|+ |  ++.|..||++++|+...+..  ..++      .   +|...|.+|.|.+
T Consensus       157 -------~~~---~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~  223 (388)
T 1xip_A          157 -------STK---QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS  223 (388)
T ss_dssp             -------CEE---EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred             -------ccc---cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence                   111   13357999999999 6  67888999999999887664  4555      3   4788999999999


Q ss_pred             CCCCeEEE
Q 048199          479 TEPSMLVS  486 (495)
Q Consensus       479 ~~g~~l~s  486 (495)
                       ++.+|++
T Consensus       224 -~~~flv~  230 (388)
T 1xip_A          224 -PQDFLAV  230 (388)
T ss_dssp             -SSEEEEE
T ss_pred             -CCeEEEE
Confidence             8888876

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=2.1e-07  Score=67.00  Aligned_cols=46  Identities=22%  Similarity=0.678  Sum_probs=39.0

Q ss_pred             ccccccccchhhhcc-ccCCCCccchhhHHhhhcCC--CCCCCCCCcCc
Q 048199           52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNK--SDCPCCGHYLT   97 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~   97 (495)
                      .-.|+||.+++..-. ...|+|.|...||.+|++..  .+||.||....
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            356999999998433 33899999999999999887  79999998875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.37  E-value=1.1e-06  Score=94.09  Aligned_cols=106  Identities=17%  Similarity=0.265  Sum_probs=76.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      +|+..+.+++|+|||++|+.++.++     .|++||+.++        ...........+..++|+|| +..|+.++.++
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~  192 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLERVKFSCMAWTHD-GKGMFYNAYPQ  192 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEEECSCCEEECTT-SSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccCcccceEEEEeC-CCEEEEEEECC
Confidence            3555688999999999988766543     8999999987        11111111223567999999 88888877776


Q ss_pred             c----------------EEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          449 I----------------VTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       449 ~----------------v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .                |.+|++.++..    +.....|...+.++.|+| ||.+|+.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~  252 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIR  252 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEE
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEE
Confidence            6                99999988763    223333566788999999 9998887764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.37  E-value=4.8e-07  Score=97.26  Aligned_cols=105  Identities=13%  Similarity=0.034  Sum_probs=79.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCC----
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYE----  447 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~d----  447 (495)
                      ....++.|+|+|++++++  |++|++||+.++.       .......+..     ....+.|+|| +.+|+.++.+    
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~   86 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN-------SSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQW   86 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC-------EEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECS
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCc-------eEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeE
Confidence            345688999999999886  9999999999871       1111122221     2345899999 8888888876    


Q ss_pred             -----CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          448 -----GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       448 -----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                           +.+.+||+.+++.. .+..|...+..++||| ||..||.++ |+.|+
T Consensus        87 r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~  135 (740)
T 4a5s_A           87 RHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIY  135 (740)
T ss_dssp             SSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEE
T ss_pred             EEccceEEEEEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEE
Confidence                 56679999988754 4677888899999999 999999885 45554

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=98.32  E-value=3e-07  Score=97.12  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             ccCCCCccccccccchhhhccccCCC-CccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACG-HSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CG-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      ..++.+++.|||-+++++|||+++.| ++|.+.+|++|+....+||..|++++..++.||..+...|+.+....
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~  958 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK  958 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence            45678899999999999999999998 69999999999998899999999999999999999999999886543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.32  E-value=7.9e-07  Score=86.86  Aligned_cols=110  Identities=13%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEcc-ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC--EEEEec-------
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSD-------  445 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~sg~-------  445 (495)
                      ...+..++|+|++++|++++.+ .|.+|++. ++..      .........+.+..++|+|+ +.  ++++++       
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~------~~~~~~~~~g~~~~~~~spd-g~~l~~~~~~~~~~~~~  110 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI------VHEASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE------EEEEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE------EEeeEeecCCCCccEEECCC-CCEEEEEEecCCcceec
Confidence            3467889999999999999888 99999997 5410      01111111123556899999 76  455664       


Q ss_pred             ------CCCcEEEEeCC-CCcceeecc----cccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199          446 ------YEGIVTVWDVT-TQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       446 ------~dg~v~iwd~~-~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~  494 (495)
                            .+|++.+|++. .+.....+.    .+...+.+++|+| +|.+|++++. ++.|+
T Consensus       111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~  170 (365)
T 1jof_A          111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLW  170 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEE
Confidence                  68999999997 465544443    2456789999999 9998877653 55665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.30  E-value=1.8e-06  Score=83.09  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcC------CCCCEEEEecC
Q 048199          377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNK------FSKNRIASSDY  446 (495)
Q Consensus       377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p------~~~~~l~sg~~  446 (495)
                      ....+|+|+|+ +.++++...++.|++||..++        ..+..+   .+...+..++|+|      + +..+++...
T Consensus       196 ~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--------~~~~~~~~~~~~~~~~~~~~~pg~~~~~~-g~~~v~~~~  266 (329)
T 3fvz_A          196 SVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--------EFVREIKHASFGRNVFAISYIPGFLFAVN-GKPYFGDQE  266 (329)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--------CEEEEECCTTTTTCEEEEEEETTEEEEEE-CCCCTTCSC
T ss_pred             CCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--------cEEEEEeccccCCCcceeeecCCEEEEeC-CCEEeccCC
Confidence            45889999998 888888889999999999865        122222   3455788999998      4 444444555


Q ss_pred             CCcEEEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 EGIVTVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +..|++||..++..+..+.   ++...+.+|+|+| +|.++++...+++|+
T Consensus       267 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          267 PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVW  316 (329)
T ss_dssp             CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred             CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence            6699999999999888873   6777899999999 998889988888886

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.29  E-value=1.3e-05  Score=77.04  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC------------------------CcEEEEEccccccCCCCcCCCeeec--CCCCCeE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVS------------------------RRIKVFDFASVVNEPADVHCPVVEM--PTRSKLS  429 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~  429 (495)
                      .+.|.+|+|+|+|+++++.+.+                        ++|.+||..++        ......  .+...+.
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~   94 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH   94 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence            4569999999999999988877                        47999998876        122222  2335689


Q ss_pred             EEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeec---------ccccCcEEEEEeecCCCCeEEEee-CCCcEe
Q 048199          430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEY---------EEHEKRAWSVDFSRTEPSMLVSGS-DDCKVL  494 (495)
Q Consensus       430 ~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~  494 (495)
                      .++++|+ +.++++...++.|++||..... .+..+         .++-...+.|+|+|.++.++++.+ .++.|+
T Consensus        95 gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           95 GLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             EEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             EEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            9999999 8899999999999999976432 45555         344557899999985678888886 577775

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.26  E-value=2.9e-05  Score=74.34  Aligned_cols=107  Identities=10%  Similarity=0.010  Sum_probs=80.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC----Cc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE----GI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d----g~  449 (495)
                      .+...+.+++|+|++++++++..++.|.+||..++       ........+...+.+++|+|+ +.++++...+    +.
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-------cEEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCce
Confidence            45667899999999998888888999999999875       111111134567999999999 7888877766    68


Q ss_pred             EEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeC
Q 048199          450 VTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      |.+||..++.....+.  .+...++.++|+| +|.++++...
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~  154 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFR  154 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECC
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEecc
Confidence            9999988766542332  2456789999999 8888887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.24  E-value=1.5e-05  Score=74.54  Aligned_cols=108  Identities=10%  Similarity=0.114  Sum_probs=84.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      +...+.+++++|+|+++++...++.|.+||....         .+..+   .+...+..++++++ +.++++...++.|.
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVK  188 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---------EEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEE
Confidence            4567899999999998888888899999996542         11222   33456899999999 88888888899999


Q ss_pred             EEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCC-cEe
Q 048199          452 VWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDC-KVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~-~v~  494 (495)
                      +||. .+..+..+..+  ...+.++++++ +|.++++...++ .|+
T Consensus       189 ~~~~-~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~  232 (286)
T 1q7f_A          189 VFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLT  232 (286)
T ss_dssp             EEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEE
T ss_pred             EEcC-CCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEE
Confidence            9997 46666666543  36789999999 999888887775 665

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.21  E-value=5.6e-07  Score=67.14  Aligned_cols=45  Identities=33%  Similarity=0.773  Sum_probs=38.4

Q ss_pred             ccccccchhhh-ccccCCCCccchhhHHhhhcC-CCCCCCCCCcCcc
Q 048199           54 LCPICMQIIKE-AFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~   98 (495)
                      .|++|.-.+.. .+++||.|+||+.|+..|... ...||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            59999888876 468999999999999999754 5799999998864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.17  E-value=1.2e-05  Score=75.67  Aligned_cols=111  Identities=10%  Similarity=-0.069  Sum_probs=82.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc-ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .+......++|+|+++.+++.+.++.|.+||+. .+.  +. ....+. ..+...+.+++++++ +.++++.  ++.|.+
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~-~~~~~~-~~~~~~p~~i~~d~~-G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TE-YQGVHF-TVEPGKTDGLRVDAG-GLIWASA--GDGVHV  241 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EE-EEEEEE-CCSSSCCCSEEEBTT-SCEEEEE--TTEEEE
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--Cc-CCCeEe-eCCCCCCCeEEECCC-CCEEEEc--CCeEEE
Confidence            445677899999999988888888999999997 320  00 000111 123445678999999 7776666  789999


Q ss_pred             EeCCCCcceeecccccCcEEEEEee-cCCCCeEEEeeCCCcEe
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~s~s~D~~v~  494 (495)
                      ||.. +..+..+..+.. +.+++|. + ++..|+.++.++.++
T Consensus       242 ~~~~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          242 LTPD-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWS  281 (296)
T ss_dssp             ECTT-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEE
T ss_pred             ECCC-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEE
Confidence            9986 888888887777 9999995 6 888888888887655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.16  E-value=8.3e-06  Score=79.54  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             EEEccCCCEEEEEeC-----------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          382 IEFDRDDQLFATAGV-----------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       382 l~~~p~~~~l~s~s~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      ++|+|++..++.+..           ..+|.+||+.+.        ..+..+.... +++++|+|| +.+|+++.. ++|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------~~v~~i~~~~-p~~ia~spd-g~~l~v~n~-~~v  327 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------QRVARIPGRD-ALSMTIDQQ-RNLMLTLDG-GNV  327 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------EEEEEEECTT-CCEEEEETT-TTEEEEECS-SCE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------cEEEEEecCC-eeEEEECCC-CCEEEEeCC-CeE
Confidence            689999776665432           347999999886        3333333333 899999999 889998887 999


Q ss_pred             EEEeCCCC--cceeecccccCcEEEEEeecCCCC
Q 048199          451 TVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTEPS  482 (495)
Q Consensus       451 ~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~g~  482 (495)
                      .+||..++  +.+..+..+....+.++|+| +|.
T Consensus       328 ~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p-~G~  360 (361)
T 2oiz_A          328 NVYDISQPEPKLLRTIEGAAEASLQVQFHP-VGG  360 (361)
T ss_dssp             EEEECSSSSCEEEEEETTSCSSEEEEEECC-CSC
T ss_pred             EEEECCCCcceeeEEeccCCCCcEEEEecC-CCC
Confidence            99999999  99999877778889999999 775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.14  E-value=1.9e-05  Score=72.98  Aligned_cols=110  Identities=10%  Similarity=0.055  Sum_probs=82.8

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ..+.+++++++|+++++...++.|.+||.....       ...........+.+++++++ +.++++...++.|.+||..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-------QVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-------EEECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTT
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-------eEeecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCC
Confidence            467899999999988888888999999987651       11111122356899999999 7888888888999999987


Q ss_pred             CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       457 ~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ..........+...+.++++++ +|.++++.+.+++|++
T Consensus       222 ~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          222 STTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVK  259 (270)
T ss_dssp             CSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEE
T ss_pred             CCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEE
Confidence            5543333223445789999999 8998899888988864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.13  E-value=7.4e-06  Score=78.90  Aligned_cols=99  Identities=15%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             cEEEEEEccCCCEEEEEeCC---Cc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-----
Q 048199          378 IVSSIEFDRDDQLFATAGVS---RR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-----  447 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d---~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-----  447 (495)
                      .+..+.|+|+|+.|+.++.+   +.  |.+||+.++        .......... +..+.|+|| +..|+.++.+     
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--------~~~~l~~~~~-~~~~~wspd-g~~l~~~~~~~~~~~  129 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--------SSKKILEAKN-IRSLEWNED-SRKLLIVGFKRREDE  129 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--------EEEEEEEESE-EEEEEECTT-SSEEEEEEECCCC--
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--------ceEEEEcCCC-ccceeECCC-CCEEEEEEccCCCcC
Confidence            47789999999998887754   33  677777665        1222222233 899999999 7777766532     


Q ss_pred             ----------------------CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          448 ----------------------GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       448 ----------------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                                            ..|.+||+.++..+..+.. . .+..++|+| +| ++++++.+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~  190 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHR  190 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECC
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecc
Confidence                                  5699999998876455555 4 788999999 98 88887665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.12  E-value=8.6e-06  Score=79.43  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=82.2

Q ss_pred             hhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCC
Q 048199          345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       345 ~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..|..+.+||..   ..+.+..+..     +..+  .++|+|+++++++++          .+++|.+||+.+.      
T Consensus        28 ~~d~~v~v~D~~---t~~~~~~i~~-----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------   91 (361)
T 2oiz_A           28 LTESRVHVYDYT---NGKFLGMVPT-----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL------   91 (361)
T ss_dssp             GGGCEEEEEETT---TCCEEEEEEC-----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------
T ss_pred             cccCeEEEEECC---CCeEEEEecC-----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC------
Confidence            345678888863   2233445543     2333  899999999988876          3678999999875      


Q ss_pred             cCCCeeecC-------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeE
Q 048199          415 VHCPVVEMP-------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSML  484 (495)
Q Consensus       415 ~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l  484 (495)
                        ..+..+.       +......++|+|| +.+|+++..  +++|.+||+.+++.+.. +.. . ..+.+.+.|.++..+
T Consensus        92 --~~~~~i~~~~~~~~~g~~p~~i~~spd-g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~  166 (361)
T 2oiz_A           92 --TFEKEISLPPKRVQGLNYDGLFRQTTD-GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSF  166 (361)
T ss_dssp             --CEEEEEEECTTBCCBCCCGGGEEECTT-SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEE
T ss_pred             --cEEEEEEcCccccccCCCcceEEECCC-CCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeE
Confidence              2222111       2234678999999 888888764  57999999999988877 542 2 223344455222445


Q ss_pred             EEeeCCCcE
Q 048199          485 VSGSDDCKV  493 (495)
Q Consensus       485 ~s~s~D~~v  493 (495)
                      ++.+.||.+
T Consensus       167 ~~~~~dg~~  175 (361)
T 2oiz_A          167 MTICGDGGL  175 (361)
T ss_dssp             EEEETTSSE
T ss_pred             EEECCCCcE
Confidence            555555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.10  E-value=8.7e-06  Score=86.07  Aligned_cols=112  Identities=10%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCC--------cEEEEEcc-ccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSR--------RIKVFDFA-SVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASS  444 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~--------~i~vwd~~-~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg  444 (495)
                      +...+..++|+|||++|+.++.++        .|.+||+. ++.     ...... ...+...+..+.|+|| +.+++++
T Consensus       186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-----~~~~~~l~~~~~~~~~~~~~spd-g~l~~~~  259 (662)
T 3azo_A          186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-----FADTRTLLGGPEEAIAQAEWAPD-GSLIVAT  259 (662)
T ss_dssp             CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-----EEEEEEEEEETTBCEEEEEECTT-SCEEEEE
T ss_pred             CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-----ccccEEeCCCCCceEcceEECCC-CeEEEEE
Confidence            346788899999999999887654        79999998 330     001111 1234567899999999 6688899


Q ss_pred             cCCC--cEEEEeCCCCcceeecccccCc--------EEEEEeecCCCCeEEEeeCCCcEe
Q 048199          445 DYEG--IVTVWDVTTQQSVMEYEEHEKR--------AWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       445 ~~dg--~v~iwd~~~~~~~~~~~~h~~~--------v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +.++  .|.+||..++.......++...        +..++|++ ++.++++++. +.++
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAV  317 (662)
T ss_dssp             CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCE
T ss_pred             CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccE
Confidence            8888  5666666566654444433322        56788998 8999999887 6654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.10  E-value=1.3e-05  Score=74.97  Aligned_cols=135  Identities=7%  Similarity=-0.004  Sum_probs=96.9

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCC-CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSA-NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +..++.++.+..+.+|+.   ...+.+|.+..     +. ..+.++.+.|+|++|+  +.++.|..||. ++        
T Consensus         5 ~~~lv~~~~~~~v~~~d~---~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--------   65 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINK---DTKEIVWEYPL-----EKGWECNSVAATKAGEILF--SYSKGAKMITR-DG--------   65 (276)
T ss_dssp             CEEEEECTTCSEEEEEET---TTTEEEEEEEC-----CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS--------
T ss_pred             CcEEEeeCCCCEEEEEEC---CCCeEEEEeCC-----CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC--------
Confidence            345667788888999986   23456788773     22 4678999999999998  34788999998 55        


Q ss_pred             CCeeecC--CCCCeEEEEEcCCCCCEEEEecC-CCcEEEEeCCCCcceeecc------cccCcEEEEEeecCCCCeEEEe
Q 048199          417 CPVVEMP--TRSKLSCLSWNKFSKNRIASSDY-EGIVTVWDVTTQQSVMEYE------EHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       417 ~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd~~~~~~~~~~~------~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      ..+-.+.  ....+.++.+.++ +.++++.+. ++.|..+|. +|+.+..+.      ++......+++.+ +|.+|++.
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~d-G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~  142 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPD-GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPL  142 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTT-SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEE
T ss_pred             CEEEEEcCCCCccccccEECCC-CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEe
Confidence            1222221  2246888999999 889998877 788888885 677766654      2223455667788 99999999


Q ss_pred             eCCCcEe
Q 048199          488 SDDCKVL  494 (495)
Q Consensus       488 s~D~~v~  494 (495)
                      +.++.|.
T Consensus       143 ~~~~~v~  149 (276)
T 3no2_A          143 FATSEVR  149 (276)
T ss_dssp             TTTTEEE
T ss_pred             cCCCEEE
Confidence            8888875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.10  E-value=1.4e-06  Score=60.24  Aligned_cols=49  Identities=24%  Similarity=0.536  Sum_probs=40.3

Q ss_pred             CCccccccccchhhhccccCCC--C---ccchhhHHhhhcC--CCCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKEAFLTACG--H---SFCYMCIITHLRN--KSDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~CG--H---~FC~~Ci~~~~~~--~~~CP~Cr~~~~~   98 (495)
                      ++...|.||++...+|.++||.  |   .|.+.||.+|+..  +..||+|+.++..
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            3456799999988888888864  4   8999999999975  4689999998754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.05  E-value=3.9e-05  Score=79.23  Aligned_cols=137  Identities=13%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc--ccccCCCCcC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA--SVVNEPADVH  416 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~--~~~~~~~~~~  416 (495)
                      ..+++..++.++.++|..   ....+..+..|      ..+..+.|+|+|+++++++.|+.|.+||+.  +.        
T Consensus       168 ~~~V~~~~~~~V~viD~~---t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--------  230 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGS---TYEIKTVLDTG------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--------  230 (567)
T ss_dssp             EEEEEETTTTEEEEEETT---TCCEEEEEECS------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------
T ss_pred             eEEEEeCCCCeEEEEECC---CCeEEEEEeCC------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--------
Confidence            344555666788888873   33445555542      246689999999999999999999999996  43        


Q ss_pred             CCeeecCCCCCeEEEEEc----CCCCCEEEEec-CCCcEEEEeCCCCcceeeccc----------ccC-cEEEEEeecCC
Q 048199          417 CPVVEMPTRSKLSCLSWN----KFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEE----------HEK-RAWSVDFSRTE  480 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~----p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~v~~~~~~  480 (495)
                      ..+..+........++|+    || +.+++++. .+++|.|||..+.+.+..+..          |.. .+..+.+++.+
T Consensus       231 ~~v~~i~~G~~P~~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~  309 (567)
T 1qks_A          231 TTVAEIKIGSEARSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  309 (567)
T ss_dssp             CEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             cEeEEEecCCCCceeEEccccCCC-CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence            233344344457899999    68 76666655 458999999999888776542          222 67778888733


Q ss_pred             CCeEEEeeCCCcE
Q 048199          481 PSMLVSGSDDCKV  493 (495)
Q Consensus       481 g~~l~s~s~D~~v  493 (495)
                      +.++++...+|.|
T Consensus       310 ~~~vv~~~~~g~v  322 (567)
T 1qks_A          310 PEFIVNVKETGKI  322 (567)
T ss_dssp             SEEEEEETTTTEE
T ss_pred             CEEEEEecCCCeE
Confidence            4455555555555

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.02  E-value=1.1e-06  Score=81.46  Aligned_cols=49  Identities=18%  Similarity=0.557  Sum_probs=39.6

Q ss_pred             CCccccccccchhhh----cc----ccCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKE----AF----LTACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~----Pv----~l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   98 (495)
                      +....|+||+..+.+    |.    ..+|||.|+..||.+|+...           +.||.||++++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            455679999999987    42    24799999999999999642           479999998763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.00  E-value=5.4e-05  Score=71.15  Aligned_cols=136  Identities=10%  Similarity=-0.052  Sum_probs=89.2

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .+..+..+..+..|+...  .   ...+.     .+...+.+++|+|+|+++++...++.|.+||..++...     ...
T Consensus        42 l~~~~~~~~~i~~~~~~~--~---~~~~~-----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-----~~~  106 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDG--Q---LSPEM-----HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-----SIA  106 (296)
T ss_dssp             EEEEEGGGTEEEEEETTS--C---EEEEE-----SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-----EEE
T ss_pred             EEEEeCCCCEEEEEECCC--C---eEEEE-----CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-----EEe
Confidence            355666666677776532  1   22222     35677999999999999888877899999999765100     000


Q ss_pred             eec--CCCCCeEEEEEcCCCCCEEEE----ecC-------------CCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199          420 VEM--PTRSKLSCLSWNKFSKNRIAS----SDY-------------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE  480 (495)
Q Consensus       420 ~~~--~~~~~i~~~~~~p~~~~~l~s----g~~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  480 (495)
                      ...  .....++.++++|+ +.++++    |..             .+.|..||.. +. +..+..+....+.++|+| +
T Consensus       107 ~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~-d  182 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLP-S  182 (296)
T ss_dssp             CEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECT-T
T ss_pred             eccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECC-C
Confidence            000  11234678999999 888887    431             3456566654 43 444555667789999999 9


Q ss_pred             CCeEEEeeCCCcEe
Q 048199          481 PSMLVSGSDDCKVL  494 (495)
Q Consensus       481 g~~l~s~s~D~~v~  494 (495)
                      +.+|++.+.++.|+
T Consensus       183 g~~lv~~~~~~~i~  196 (296)
T 3e5z_A          183 GNLLVSDTGDNATH  196 (296)
T ss_dssp             SCEEEEETTTTEEE
T ss_pred             CCEEEEeCCCCeEE
Confidence            98888877777765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.97  E-value=2.2e-05  Score=76.77  Aligned_cols=95  Identities=11%  Similarity=0.012  Sum_probs=69.4

Q ss_pred             EEEccCCCEEEEEeC-CCc--EEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC
Q 048199          382 IEFDRDDQLFATAGV-SRR--IKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT  457 (495)
Q Consensus       382 l~~~p~~~~l~s~s~-d~~--i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~  457 (495)
                      .+|+|||++|+.++. ++.  |.+||+.++        ...... .+...+..+.|+|| +..|+.++.++.|.+||+.+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~  111 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLAT  111 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCC
Confidence            789999999988887 674  777787775        111111 22233446789999 88999999899999999999


Q ss_pred             CcceeecccccCcEEEEEe--ecCCCCeEEE
Q 048199          458 QQSVMEYEEHEKRAWSVDF--SRTEPSMLVS  486 (495)
Q Consensus       458 ~~~~~~~~~h~~~v~~v~~--~~~~g~~l~s  486 (495)
                      ++....+..+...+....|  ++ ++.+++.
T Consensus       112 g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~  141 (388)
T 3pe7_A          112 LEENVVYQVPAEWVGYGTWVANS-DCTKLVG  141 (388)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECT-TSSEEEE
T ss_pred             CcceeeeechhhcccccceeECC-CCCeecc
Confidence            8877766666666654444  77 8888764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.94  E-value=8.2e-05  Score=71.08  Aligned_cols=140  Identities=9%  Similarity=-0.024  Sum_probs=86.0

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPAD  414 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~  414 (495)
                      ..+..+..+..+.+|+... .+...+  ..     .+...+.+++|+|+++++++...+    +.|.+||..++...   
T Consensus        57 ~l~~~~~~~~~i~~~d~~~-~~~~~~--~~-----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---  125 (333)
T 2dg1_A           57 QLFLLDVFEGNIFKINPET-KEIKRP--FV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---  125 (333)
T ss_dssp             CEEEEETTTCEEEEECTTT-CCEEEE--EE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE---
T ss_pred             CEEEEECCCCEEEEEeCCC-CcEEEE--ee-----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---
Confidence            3344555556677776531 111111  11     245679999999999988887766    68999998875110   


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecC------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSG  487 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~  487 (495)
                        ...........++.+.|+|+ +.++++...      .+.|..||..++.. ..+..+...+..++|+| ++.+| ++.
T Consensus       126 --~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~-dg~~l~v~~  200 (333)
T 2dg1_A          126 --DIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALST-DEKVLWVTE  200 (333)
T ss_dssp             --EEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECT-TSSEEEEEE
T ss_pred             --EEEccCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECC-CCCEEEEEe
Confidence              00001123456899999999 777777654      35566666654443 33333445678999999 88755 454


Q ss_pred             eCCCcEe
Q 048199          488 SDDCKVL  494 (495)
Q Consensus       488 s~D~~v~  494 (495)
                      +.++.|.
T Consensus       201 ~~~~~i~  207 (333)
T 2dg1_A          201 TTANRLH  207 (333)
T ss_dssp             GGGTEEE
T ss_pred             CCCCeEE
Confidence            5555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.93  E-value=3.3e-05  Score=75.46  Aligned_cols=107  Identities=11%  Similarity=-0.019  Sum_probs=74.5

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEE--EcCCCCCEEEE--------
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS--WNKFSKNRIAS--------  443 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~p~~~~~l~s--------  443 (495)
                      +|...+.++.|+|+|+.|+.++.++.|.+||+.++       ........+...+....  ++|+ +.+++.        
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~  149 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDW  149 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGC
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC-------cceeeeechhhcccccceeECCC-CCeeccccccCccc
Confidence            44555556789999999999999999999999986       11111222333343333  4888 777763        


Q ss_pred             --------------ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          444 --------------SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       444 --------------g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                                    ...++.|.+||+.++.. ..+..+...+..++|+|.+|..|+..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEe
Confidence                          23456899999998854 4455677789999999856677776664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.90  E-value=9.8e-05  Score=68.07  Aligned_cols=110  Identities=10%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...+.+++++|+|+++++...++.|.+|+..+..       ...........+.+++++++ +.++++...++.|.+||.
T Consensus       107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-------QTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-------CEECCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECT
T ss_pred             cCCCcceEECCCCCEEEEECCCCEEEEEECCCce-------eEeeccccCCCceeEEEeCC-CCEEEEECCCCEEEEEec
Confidence            3568999999999988888888999999765431       11111122345788999998 778888877899999998


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...........+...+.++++.+ +|.++++...++.|.
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~  216 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVV  216 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEE
T ss_pred             CCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEE
Confidence            86654443333446788999999 888888777777664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.89  E-value=2.3e-05  Score=84.12  Aligned_cols=106  Identities=23%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199          375 SANIVSSIEFDRDDQLFATAGVS-----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI  449 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~  449 (495)
                      |...+.+++|+|||++|+.++.+     ..|++||+.++        ..+....+...+..++|+|| ..++++. .++.
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg--------~~~~~~~~~~~~~~~~wspD-~~l~~~~-~~~~  230 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG--------KPLADELKWVKFSGLAWLGN-DALLYSR-FAEP  230 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC--------CEEEEEEEEEESCCCEESTT-SEEEEEE-CCCC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCCccCCCceeccEEEECC-CEEEEEE-ecCc
Confidence            44468899999999998877654     46999999987        11111111112357899999 5555544 4443


Q ss_pred             --------------EEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          450 --------------VTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       450 --------------v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                                    |.+|++.++..    +.....|...+.++.|+| ||.+|+..+.++
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~  289 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEG  289 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECT
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEcc
Confidence                          89999987652    222233444688999999 999888777543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.74  E-value=0.00011  Score=71.74  Aligned_cols=99  Identities=11%  Similarity=-0.000  Sum_probs=68.0

Q ss_pred             cEEEEEEccCCCEEEEEeCC-----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcC-CCCCEEEEec------
Q 048199          378 IVSSIEFDRDDQLFATAGVS-----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK-FSKNRIASSD------  445 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~sg~------  445 (495)
                      .+..+.|+|+|+.|+.++.+     +.|.+||+.++        ......... ... +.|+| + +.+|++++      
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--------~~~~l~~~~-~~~-~~~s~~d-g~~l~~~~~~~p~~  307 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL--------ENEEVMVMP-PCS-HLMSNFD-GSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC--------CEEEEEECC-SEE-EEEECSS-SSEEEEEECCC---
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCC--------CeEEeeeCC-CCC-CCccCCC-CceEEEecCCccee
Confidence            57889999999987776554     44999999876        111111111 233 89999 8 77777654      


Q ss_pred             ----------CCCcEEEEeCCCCcceeecccccC-----------cEEEEEeecCCCCeEEEeeC
Q 048199          446 ----------YEGIVTVWDVTTQQSVMEYEEHEK-----------RAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       446 ----------~dg~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~~~~~g~~l~s~s~  489 (495)
                                .++.|.+||+.++.. ..+..|..           .+..++|+| +|..|+.++.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~  370 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSD  370 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEEC
T ss_pred             eccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEcc-CCCeEEEEec
Confidence                      347899999987764 44555544           256788999 9988887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.71  E-value=0.00015  Score=74.93  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=77.1

Q ss_pred             EccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC--CCcce
Q 048199          384 FDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT--TQQSV  461 (495)
Q Consensus       384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~--~~~~~  461 (495)
                      .+|.+.++++...+++|.+||..++        ..+..+.....+..+.|+|| +.++++++.|+.|.+||+.  +++.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v  233 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDTGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTV  233 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeCCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEe
Confidence            3455667788888999999999986        33444444456789999999 8899999999999999996  78877


Q ss_pred             eecccccCcEEEEEee----cCCCCeEEEeeC-CCcEe
Q 048199          462 MEYEEHEKRAWSVDFS----RTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       462 ~~~~~h~~~v~~v~~~----~~~g~~l~s~s~-D~~v~  494 (495)
                      ..+.... ....++|+    | ||+++++++. ++.|.
T Consensus       234 ~~i~~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          234 AEIKIGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             EEEECCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEE
T ss_pred             EEEecCC-CCceeEEccccCC-CCCEEEEEEccCCeEE
Confidence            7776533 45789999    7 9988887775 35543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.70  E-value=0.00025  Score=66.78  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CcEEEEEEccCCCEE-EEEeCCCcEEEEEcc--ccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          377 NIVSSIEFDRDDQLF-ATAGVSRRIKVFDFA--SVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .....++|+|+++.| ++.+.++.|.+||++  ++.  +.. ......+ .....+..++++++ ++++++...++.|.+
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~--~~~-~~~~~~~~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ--ISN-RRSVYKLEKEEQIPDGMCIDAE-GKLWVACYNGGRVIR  224 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC--EEE-EEEEEECCGGGCEEEEEEEBTT-SCEEEEEETTTEEEE
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc--ccC-cEEEEECCCCCCCCCeeEECCC-CCEEEEEcCCCEEEE
Confidence            446789999999855 566678899999984  320  000 0111111 12346789999999 888888777889999


Q ss_pred             EeCCCCcceeecccccCcEEEEEee-cCCCCeEEEee
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSGS  488 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~s~s  488 (495)
                      ||..+|+.+..+..+...+++++|. | ++..|+.++
T Consensus       225 ~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~  260 (297)
T 3g4e_A          225 LDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC  260 (297)
T ss_dssp             ECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred             EcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence            9999999998888777789999998 7 766654443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.68  E-value=0.00023  Score=68.19  Aligned_cols=128  Identities=10%  Similarity=0.083  Sum_probs=83.7

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----------CcEEEEEccccccCCCCcC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----------RRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----------~~i~vwd~~~~~~~~~~~~  416 (495)
                      +.++.++|...   ...+..+..+      .....+.++|+|++++++..+          +.|.+||..++        
T Consensus       151 ~~~v~viD~~t---~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--------  213 (328)
T 3dsm_A          151 QNRILKIDTET---DKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--------  213 (328)
T ss_dssp             CCEEEEEETTT---TEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--------
T ss_pred             CCEEEEEECCC---CeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--------
Confidence            44566666532   2333344321      234678899999988777655          78999999876        


Q ss_pred             CCeee--cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-e-cccccCcEEEEEeecCCCCeEEEe----e
Q 048199          417 CPVVE--MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-E-YEEHEKRAWSVDFSRTEPSMLVSG----S  488 (495)
Q Consensus       417 ~~~~~--~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~-~~~h~~~v~~v~~~~~~g~~l~s~----s  488 (495)
                      .....  ......++.++|+|+ +..|+.+..  .|.+||..+++... . +..+....+.++++|.++.++++.    .
T Consensus       214 ~v~~~~~~~~g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~  290 (328)
T 3dsm_A          214 TVEKQFKFKLGDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ  290 (328)
T ss_dssp             EEEEEEECCTTCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred             eEEEEEecCCCCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence            11112  222346899999999 777777654  89999998877542 2 222246789999998566666776    5


Q ss_pred             CCCcEe
Q 048199          489 DDCKVL  494 (495)
Q Consensus       489 ~D~~v~  494 (495)
                      .++.|.
T Consensus       291 ~~~~V~  296 (328)
T 3dsm_A          291 QQGIVY  296 (328)
T ss_dssp             SEEEEE
T ss_pred             cCCEEE
Confidence            566664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.68  E-value=0.0005  Score=64.77  Aligned_cols=112  Identities=10%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             CcEEEEEEc----cCCCEE-EEEeCCCcEEEEEcc-ccccCCCCcCCCeeecC-CC-CCeEEEEEcCCCCCEEEEecCCC
Q 048199          377 NIVSSIEFD----RDDQLF-ATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMP-TR-SKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       377 ~~V~~l~~~----p~~~~l-~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      .....++|+    |+++.+ ++...++.|.+||+. .+.  +.. ......+. +. ..+..++++++ +.++++...++
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~--~~~-~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~~  247 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--IEN-KKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSS  247 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--EEE-EEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTT
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--ccc-ceEEEECCCCCCCCCCceEECCC-CCEEEEEcCCC
Confidence            446789999    998654 455668999999986 220  000 00111121 22 55788999999 88888877788


Q ss_pred             cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcE
Q 048199          449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKV  493 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v  493 (495)
                      .|.+||..++..+..+..+...+.+++|++ ++..| ++...++.|
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l  292 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             EEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeE
Confidence            999999988887777777777899999999 88855 444445554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.64  E-value=0.00023  Score=66.41  Aligned_cols=94  Identities=11%  Similarity=0.073  Sum_probs=73.3

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CC-CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TR-SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~  464 (495)
                      .+++|++++.|+.|.+||..++        ..+-.+. +. ..++++.+.|+ +++|++  .++.|..||. +|+.+..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECT-TSCEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECC-CCCEEEEE
Confidence            3678999999999999999787        2222222 22 35789999999 888884  4788999998 89999888


Q ss_pred             cccc-CcEEEEEeecCCCCeEEEeeC-CCcE
Q 048199          465 EEHE-KRAWSVDFSRTEPSMLVSGSD-DCKV  493 (495)
Q Consensus       465 ~~h~-~~v~~v~~~~~~g~~l~s~s~-D~~v  493 (495)
                      ..+. ..+.++.+.+ +|.++++.+. ++.|
T Consensus        72 ~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v  101 (276)
T 3no2_A           72 AAPAGCEMQTARILP-DGNALVAWCGHPSTI  101 (276)
T ss_dssp             ECCTTCEEEEEEECT-TSCEEEEEESTTEEE
T ss_pred             cCCCCccccccEECC-CCCEEEEecCCCCEE
Confidence            8653 4788999999 9999999876 5544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.60  E-value=0.00019  Score=68.66  Aligned_cols=131  Identities=11%  Similarity=0.052  Sum_probs=84.8

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ..+.....+..+.+||...   .+.+..+.      .......++|++++.++++...++.|.+||..++        ..
T Consensus        55 ~lyv~~~~~~~v~viD~~t---~~~~~~i~------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~--------~~  117 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINT---FKEVGRIT------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY--------EI  117 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTT---CCEEEEEE------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT--------EE
T ss_pred             EEEEEEcCCCEEEEEECcc---cEEEEEcC------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC--------eE
Confidence            3444445556777887642   23344443      1356889999998866666658999999999886        11


Q ss_pred             eeecCCCC------CeEEEEEcCCCCCEEEEec-CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          419 VVEMPTRS------KLSCLSWNKFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       419 ~~~~~~~~------~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ...+....      ....+++  +++.++++.. .++.|.+||..+++.+..+... .....+.+++ +|.+++++..+
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~  192 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDK-YNKMWTITDGG  192 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECT-TSEEEEEBCCB
T ss_pred             EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcC-CCCEEEEECCC
Confidence            11111111      4556777  3244444443 4889999999999887777643 3456788999 88877777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.56  E-value=0.0012  Score=61.31  Aligned_cols=109  Identities=7%  Similarity=0.072  Sum_probs=79.5

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .+...+.++.++++|+++++...++.|.+||.. +       ...... ......+.+++++++ +.++++...++.|..
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-------~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-------KITEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGR   82 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-------CEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-------CeEEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEE
Confidence            345679999999999988887778999999987 4       111111 123457899999998 888888777889999


Q ss_pred             EeCCCCcceeec--ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          453 WDVTTQQSVMEY--EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       453 wd~~~~~~~~~~--~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ||.. +.. ..+  ..+...+.++++.+ +|.++++...++.|.
T Consensus        83 ~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~  123 (299)
T 2z2n_A           83 ITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIG  123 (299)
T ss_dssp             ECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred             ECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEE
Confidence            9976 432 222  22455789999999 888888776666553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.54  E-value=0.00044  Score=73.72  Aligned_cols=111  Identities=10%  Similarity=-0.087  Sum_probs=75.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEccc------cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGV-----SRRIKVFDFAS------VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS  443 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s  443 (495)
                      |...+.++.|+|+|++|+.++.     +..|.+||+.+      +..      .......+...+.. .|+|+ +..|+.
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~l~~~~~~~~~-~~s~d-g~~l~~  302 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------KWVKLIDNFEGEYD-YVTNE-GTVFTF  302 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC------CCEEEECSSSSCEE-EEEEE-TTEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc------ceEEeeCCCCcEEE-EEecc-CCEEEE
Confidence            4566889999999998887765     56899999986      300      12222234444444 48888 555554


Q ss_pred             ecC-C---CcEEEEeCCCCc--ceeecccccC--cEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          444 SDY-E---GIVTVWDVTTQQ--SVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       444 g~~-d---g~v~iwd~~~~~--~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+. +   +.|.+||+.++.  ....+..|..  .+.+++|++ ++.++++...|+..+
T Consensus       303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEE
T ss_pred             EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEE
Confidence            433 2   369999998764  3455555644  788899997 778889988888654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.54  E-value=3.4e-05  Score=75.44  Aligned_cols=87  Identities=14%  Similarity=0.023  Sum_probs=59.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCC-eEEEEEcCCCCCEEEEecCCCcE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSK-LSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      |...+.+++|+|+|++|+.....   ..|.+||+.++        .......+... ...+.|+|| +..|+.++.++.|
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~spd-g~~l~~~~~~~~l  104 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------QAVQLTEGKGDNTFGGFISTD-ERAFFYVKNELNL  104 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------EEEECCCSSCBCTTTCEECTT-SSEEEEEETTTEE
T ss_pred             cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------cEEEeecCCCCccccceECCC-CCEEEEEEcCCcE
Confidence            34447788999999988776543   46788888775        11111122222 223789999 8899888888899


Q ss_pred             EEEeCCCCcceeecccccCc
Q 048199          451 TVWDVTTQQSVMEYEEHEKR  470 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~  470 (495)
                      .+||+.++.....+..+..+
T Consensus       105 ~~~d~~~~~~~~~~~~~~~~  124 (396)
T 3c5m_A          105 MKVDLETLEEQVIYTVDEEW  124 (396)
T ss_dssp             EEEETTTCCEEEEEECCTTE
T ss_pred             EEEECCCCCcEEEEeccccc
Confidence            99999988766555544443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.54  E-value=0.00014  Score=77.33  Aligned_cols=103  Identities=20%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEE-----eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199          374 HSANIVSSIEFDRDDQLFATA-----GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~-----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      +|...+.+++|+|||++|+.+     +...+|++||+.++        ..+.......+...++|+ | +..|+.++.+.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg--------~~~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~  195 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK--------QPLETPLKDVKFSGISWL-G-NEGFFYSSYDK  195 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC--------SEEEEEEEEEESCCCEEE-T-TTEEEEEESSC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC--------CCCccccCCceeccEEEe-C-CCEEEEEEecC
Confidence            355678899999999988842     33367999999987        111111111113567899 8 77777776664


Q ss_pred             -------------cEEEEeCCCCcc----eeeccc-ccCcEEEEEeecCCCCeEEEe
Q 048199          449 -------------IVTVWDVTTQQS----VMEYEE-HEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       449 -------------~v~iwd~~~~~~----~~~~~~-h~~~v~~v~~~~~~g~~l~s~  487 (495)
                                   .|.+|++.++..    +..... |...+.++.|+| ||.+|+..
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~  251 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLIS  251 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEE
Confidence                         399999987643    333344 556678899999 99877543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.50  E-value=0.00089  Score=64.40  Aligned_cols=111  Identities=11%  Similarity=0.018  Sum_probs=77.1

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeec-----CCCCCeEEEEEcCCCCCEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEM-----PTRSKLSCLSWNKFSKNRIAS  443 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~l~s  443 (495)
                      +|...+.+++|+++++++++...     +..|.+||+.++..      .....+     .+...++.++++++++..+++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE------EEEEECChhhcccccccceEEEecCCCEEEEE
Confidence            46678999999999987776544     67899999987610      000111     123456899999874555566


Q ss_pred             ec---CCCcEEEEeCCCCcceeeccccc-----------------------------CcEEEEEeecCCCCeEEEeeCCC
Q 048199          444 SD---YEGIVTVWDVTTQQSVMEYEEHE-----------------------------KRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       444 g~---~dg~v~iwd~~~~~~~~~~~~h~-----------------------------~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ..   .++.|.+||..++.....+.+|.                             ..++.++|+| +|.+|+.+..++
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~  216 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHS  216 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSC
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCC
Confidence            55   67899999998877655554321                             2368899999 998888776654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.47  E-value=0.0005  Score=65.86  Aligned_cols=95  Identities=14%  Similarity=0.030  Sum_probs=66.8

Q ss_pred             CcEEEEEEccCCCEEEEEe---------CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC
Q 048199          377 NIVSSIEFDRDDQLFATAG---------VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE  447 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d  447 (495)
                      ..+....|  +|+.++...         .+..|.+||+.++        .. ..+   ..+..+.|+|| +..|+..+.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--------~~-~~l---~~~~~~~~SpD-g~~la~~~~~   79 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--------AR-RFI---ENATMPRISPD-GKKIAFMRAN   79 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--------CE-EEE---ESCEEEEECTT-SSEEEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--------ce-EEc---ccCCCeEECCC-CCEEEEEEec
Confidence            34667777  787766542         3667999999876        11 112   45788999999 8777776643


Q ss_pred             ---C--cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          448 ---G--IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       448 ---g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                         +  .|.+||+.+++.......+ . +..++|+| ||..|+.++.
T Consensus        80 ~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~  123 (347)
T 2gop_A           80 EEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGF  123 (347)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEE
T ss_pred             cCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEc
Confidence               3  3888898877665544433 3 99999999 9998888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.42  E-value=0.0022  Score=59.55  Aligned_cols=110  Identities=6%  Similarity=-0.110  Sum_probs=78.7

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      +...+.++.+++++.++++...++.|.+||. ++.      ............+..++++++ +.++++...++.|.+||
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK------IREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRIT  168 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC------EEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEEC
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCC------EEEecCCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEc
Confidence            3457899999999998888877889999998 430      011111123456899999999 78888877788999999


Q ss_pred             CCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      . ++..... +..+...+.++++.+ +|.++++...++.|.
T Consensus       169 ~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          169 E-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIG  207 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEE
T ss_pred             C-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEE
Confidence            8 6654432 333445688999999 888777766566553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.42  E-value=0.00063  Score=72.31  Aligned_cols=110  Identities=8%  Similarity=-0.118  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCC----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---C
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSR----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---Y  446 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~  446 (495)
                      .|...+.++.|+|+|++|+.++.++    .|.+|+..++        .......+...+....| ++++ +++++.   .
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~  293 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--------DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAP  293 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--------SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--------ceEEeecCCCceEEEEe-cCCc-EEEEECCCCC
Confidence            3556889999999999888777665    4555554332        22222334445566667 4535 666555   3


Q ss_pred             CCcEEEEeCCCCcc--eeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          447 EGIVTVWDVTTQQS--VMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       447 dg~v~iwd~~~~~~--~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ++.|.+||+.++..  ...+..|  ...+.+++|+  ++.++++...|+..+|
T Consensus       294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence            57899999987653  2344333  4568888887  5678888888887653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.35  E-value=0.0008  Score=66.55  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=74.5

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEEEEe
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~iwd  454 (495)
                      .....|+|+++++++++...++.|++||..++        ............. ++|+++ +..|+.++.++  .|.+||
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEEEE
Confidence            46889999999998888888899999999875        1111111222334 999999 77888888766  799999


Q ss_pred             CCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...+.....+    ..+...+++++++| ++..|+.+..++.|+
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~  243 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFG  243 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEE
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEE
Confidence            8765543333    22456678899998 444555565666654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.34  E-value=5.8e-05  Score=58.61  Aligned_cols=33  Identities=27%  Similarity=0.654  Sum_probs=28.4

Q ss_pred             Cccccccccch-hhhccc--cCCCCccchhhHHhhh
Q 048199           51 KDMLCPICMQI-IKEAFL--TACGHSFCYMCIITHL   83 (495)
Q Consensus        51 ~~l~C~IC~~~-~~~Pv~--l~CGH~FC~~Ci~~~~   83 (495)
                      +++.|+||.+. +.+|+.  +.|||+||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            46889999975 788887  8999999999999833

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.32  E-value=0.0022  Score=63.40  Aligned_cols=111  Identities=5%  Similarity=-0.050  Sum_probs=77.3

Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC-CC-----eeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEE
Q 048199          381 SIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH-CP-----VVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTV  452 (495)
Q Consensus       381 ~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~-----~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~i  452 (495)
                      .++|+| ++.++++...++.|+.|+.+.....+.+.. ..     ............++|+|+ +.++++-. .++.|+.
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEE
Confidence            999999 577777778889999999875311100000 00     000011235789999999 88888887 8999999


Q ss_pred             EeCCCCcceeecccc---------------cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          453 WDVTTQQSVMEYEEH---------------EKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       453 wd~~~~~~~~~~~~h---------------~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ||..++. +.++.++               -...+.|++++ +|.++++...+++|+
T Consensus       350 ~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          350 LDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIR  404 (409)
T ss_dssp             EETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEE
T ss_pred             EECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEE
Confidence            9987665 4444444               24688999999 888888888888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.29  E-value=0.0046  Score=58.89  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             CcEEEEEEccCCCEEE-EEeCCCcEEEEEcc--ccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          377 NIVSSIEFDRDDQLFA-TAGVSRRIKVFDFA--SVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .....++|+|+++.++ +.+.++.|.+||+.  ++.. +.. ......+ .....+..+.++++ +.++++...++.|.+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~-~~~-~~~~~~~~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP-TGK-AEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDR  255 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB-SSC-CEEEEECTTSSSEEEEEEECTT-SCEEEEEETTTEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc-ccC-ceEEEECCCCCCCCCeeEECCC-CCEEEEEeCCCEEEE
Confidence            3567899999998654 55567899999986  3200 000 0111111 12345788999999 777777766789999


Q ss_pred             EeCCCCcceeecccccCcEEEEEee-cCCCCeEE-EeeCC
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLV-SGSDD  490 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~-s~s~D  490 (495)
                      ||. ++..+..+..+...+.+++|. + ++..|+ +...+
T Consensus       256 ~d~-~g~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~~~~  293 (326)
T 2ghs_A          256 YDT-DGNHIARYEVPGKQTTCPAFIGP-DASRLLVTSARE  293 (326)
T ss_dssp             ECT-TCCEEEEEECSCSBEEEEEEEST-TSCEEEEEEBCT
T ss_pred             ECC-CCCEEEEEECCCCCcEEEEEecC-CCCEEEEEecCC
Confidence            998 577777777777789999998 7 766654 44443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.27  E-value=0.0012  Score=62.02  Aligned_cols=107  Identities=13%  Similarity=0.071  Sum_probs=72.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCC---------------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEc----CCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVS---------------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWN----KFS  437 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d---------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----p~~  437 (495)
                      ..+.+++++++|+++++...+               +.|..||.. +        .......+......++|+    |+ 
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~~~~~~~~~~~~i~~~~~~d~d-  186 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--------QMIQVDTAFQFPNGIAVRHMNDGR-  186 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------CEEEEEEEESSEEEEEEEECTTSC-
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C--------CEEEeccCCCCcceEEEecccCCC-
Confidence            458899999999988877655               455555544 2        111112223456889999    99 


Q ss_pred             CC-EEEEecCCCcEEEEeCC-CCc-----ceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          438 KN-RIASSDYEGIVTVWDVT-TQQ-----SVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       438 ~~-~l~sg~~dg~v~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +. ++++...++.|.+||.. ++.     ....+.++. ..+..+++.+ +|.++++...++.|.
T Consensus       187 g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE  250 (314)
T ss_dssp             EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEE
Confidence            64 45555678899999976 443     233444444 6688999999 998888877666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.25  E-value=0.00087  Score=65.19  Aligned_cols=98  Identities=17%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCCC
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      .+.+.|.   ...+.+..+..|     ..+  .+.++|+|++++.++          .+.+|.+||..+.        ..
T Consensus        60 ~V~ViD~---~t~~v~~~I~vG-----~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------~v  121 (386)
T 3sjl_D           60 QQFVIDG---EAGRVIGMIDGG-----FLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------LP  121 (386)
T ss_dssp             EEEEEET---TTTEEEEEEEEC-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------CE
T ss_pred             EEEEEEC---CCCeEEEEEECC-----CCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------eE
Confidence            5556555   344556666643     223  499999999877665          3678999999986        22


Q ss_pred             eeec--CC------CCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceeecc
Q 048199          419 VVEM--PT------RSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVMEYE  465 (495)
Q Consensus       419 ~~~~--~~------~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~~~  465 (495)
                      +..+  ..      ......+.|+|| +.+++.+..  ++.|.++|+.+++.+.++.
T Consensus       122 ~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          122 TADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             EEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            2222  11      124667999999 787777753  6899999999999888875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.17  E-value=0.0043  Score=60.44  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=65.0

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCCC
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ++.++|..   ..+.+..+..|     ..+  .+.|+|||+.++.+.          .+.+|.+||..+.        ..
T Consensus        48 ~v~v~D~~---t~~~~~~i~~g-----~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------~~  109 (373)
T 2mad_H           48 QQWVLDAG---SGSILGHVNGG-----FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------LP  109 (373)
T ss_pred             EEEEEECC---CCeEEEEecCC-----CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------cE
Confidence            45566652   33445555532     223  899999999888775          3678999999875        11


Q ss_pred             eeec--C------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceee-cc
Q 048199          419 VVEM--P------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVME-YE  465 (495)
Q Consensus       419 ~~~~--~------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~-~~  465 (495)
                      +..+  .      .......+.|+|| +.+|+.+..  ++.|.++| .+++.+.. +.
T Consensus       110 ~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          110 IADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             EEEEECCCccccccCCCccceEECCC-CCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence            1111  1      1123568999999 888887764  57899999 99988877 54

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.15  E-value=0.0092  Score=55.25  Aligned_cols=109  Identities=8%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ....+.++.++++|+++++...++.|.+||.. +.       ...... .....+.+++++++ +.++++...++.|..|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~   88 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKL   88 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEE
Confidence            35678999999999998888788999999987 41       111111 22356899999998 7888887778899999


Q ss_pred             eCCCCcce-eecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTTQQSV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |.. +... ..+......+.++++.+ +|.++++...++.|.
T Consensus        89 d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~  128 (300)
T 2qc5_A           89 SKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIG  128 (300)
T ss_dssp             CTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEE
T ss_pred             CCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEE
Confidence            987 5542 12222346788999998 888888776566553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.13  E-value=0.0043  Score=58.14  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             CcEEEEEEccCCCEEEEEeCC---------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecC
Q 048199          377 NIVSSIEFDRDDQLFATAGVS---------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDY  446 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~  446 (495)
                      ..+.++.++|+|+++++...+         ..-.||.+...       .............+.++|+|+ +. ++++.+.
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------g~~~~~~~~~~~pngi~~spd-g~~lyv~~~~  169 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-------HHVKKYFDQVDISNGLDWSLD-HKIFYYIDSL  169 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-------SCEEEEEEEESBEEEEEECTT-SCEEEEEEGG
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-------CCEEEEeeccccccceEEcCC-CCEEEEecCC
Confidence            457899999999977765332         34567766543       011111222345689999999 65 4566777


Q ss_pred             CCcEEEEeC--CCCcc-----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 EGIVTVWDV--TTQQS-----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 dg~v~iwd~--~~~~~-----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ++.|.+||+  .+|..     +..+..+...+..+++.+ +|.+.++...++.|.
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~  223 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVI  223 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEE
Confidence            889999997  44532     233444456788999999 888877776666553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.09  E-value=0.0026  Score=59.93  Aligned_cols=107  Identities=13%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             cEEEEEEccCCCEEEEEeCC------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          378 IVSSIEFDRDDQLFATAGVS------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      ....++|+|+++.|+.+...      +.|.+|++....  +.  ...+......+.+..+.++++ ++++++ ..+ .|.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~--~~~~~~~~~~~~pdgi~~d~~-G~lwv~-~~~-gv~  261 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LH--DRRHFASVPDGLPDGFCVDRG-GWLWSS-SGT-GVC  261 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EE--EEEEEECCSSSCCCSEEECTT-SCEEEC-CSS-EEE
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--cc--CCeEEEECCCCCCCeEEECCC-CCEEEe-cCC-cEE
Confidence            45789999999977666554      789999987541  00  000111112234567889998 775544 444 499


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +||. .+..+..+..+. .+.+++|.+ ++..|+.++.++..+
T Consensus       262 ~~~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          262 VFDS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWM  301 (305)
T ss_dssp             EECT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEE
T ss_pred             EECC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEE
Confidence            9997 577777776555 588999998 888887777776544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.07  E-value=2.1e-05  Score=76.83  Aligned_cols=136  Identities=10%  Similarity=0.007  Sum_probs=60.5

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      .+..+..|+.|+.+..|+..   ..+.+|.+..       +.+.+..+..++.++++++.|+.|..||..++..... ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~---tG~~~W~~~~-------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKR---TGSIKWTLKE-------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK-LP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETT---TCCEEEEEEC-------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE-CS
T ss_pred             eCCEEEEEcCCCEEEEEECC---CCCEEEEecC-------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee-ee
Confidence            34455667777788888863   3455676653       2333444556777888888999999999987621100 00


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ..........++    +. + +..+++|+.|+.|..||..+|+.+..+..+.    .+.++| ++..+++++.|+.|+
T Consensus        77 ~~~~~~~~~sp~----~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~  143 (369)
T 2hz6_A           77 FTIPELVQASPC----RS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTIT  143 (369)
T ss_dssp             CCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred             ccCccccccCce----Ee-c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEE
Confidence            000000011111    11 2 4467888889999999999999888777554    234567 777888888887765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.05  E-value=0.0097  Score=55.10  Aligned_cols=110  Identities=6%  Similarity=-0.045  Sum_probs=76.9

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ....+.++.++++++++++...++.|..||.....       ...........+..+.++++ +.++++...++.|.+||
T Consensus       144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-------~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          144 KGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL-------EEYPLPTNAAAPVGITSGND-GALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-------EEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEEC
T ss_pred             CCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE-------EEeeCCCCCCCcceEEECCC-CCEEEEccCCCEEEEEc
Confidence            34578999999999988777778889999983220       01111123356889999998 78877777778899999


Q ss_pred             CCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      . ++..... +..+...+.++++.+ +|.++++...++.|.
T Consensus       216 ~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~  254 (300)
T 2qc5_A          216 T-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIG  254 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEE
T ss_pred             C-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEE
Confidence            8 4543322 333456788999999 888777765556553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.99  E-value=0.0056  Score=56.24  Aligned_cols=105  Identities=10%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             CcEEEEEEccCCCEEEEEeC--CCcEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          377 NIVSSIEFDRDDQLFATAGV--SRRIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .....+.|+|++.++++.+.  +++|+++|+.++        ..+..+  ......-.++++.  +.++++.-.++.+.+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--------~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~v   90 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--------KVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFI   90 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--------CEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEE
Confidence            45689999998777766664  689999999987        222222  1222233455552  345556667889999


Q ss_pred             EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +|..+++.+.++..-...-+.  +++ ||..|+.+..++.|.
T Consensus        91 iD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~  129 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILY  129 (266)
T ss_dssp             EETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEE
T ss_pred             EECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEE
Confidence            999999988888532122233  455 666666655666664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.99  E-value=0.0014  Score=63.72  Aligned_cols=101  Identities=13%  Similarity=-0.036  Sum_probs=70.3

Q ss_pred             EEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CC
Q 048199          383 EFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YE  447 (495)
Q Consensus       383 ~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~d  447 (495)
                      ...|+++.++....     +++|.++|..+.        ..+..+....... +.++|| +.+++.++          .+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P~-va~spD-G~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLPN-PVVADD-GSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSCE-EEECTT-SSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCCc-EEECCC-CCEEEEEcccccccccCCCC
Confidence            45688887766654     679999999886        3333332222234 999999 76666654          36


Q ss_pred             CcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199          448 GIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL  494 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~  494 (495)
                      +.|.+||..+++.+..+.-.       ....+.++|+| ||.+|+.+..  ++.|.
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~Vs  163 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVG  163 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEE
Confidence            78999999999988877421       12456799999 9998887764  56654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.96  E-value=0.0083  Score=57.06  Aligned_cols=108  Identities=6%  Similarity=-0.104  Sum_probs=68.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEE
Q 048199          377 NIVSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVT  451 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~  451 (495)
                      ..+.++.++|+|+++++...+    ....||.++.+        ............+.++|+|+ +..| ++.+.++.|.
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g--------~~~~~~~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--------KVTKLFADISIPNSICFSPD-GTTGYFVDTKVNRLM  204 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--------EEEEEEEEESSEEEEEECTT-SCEEEEEETTTCEEE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC--------cEEEeeCCCcccCCeEEcCC-CCEEEEEECCCCEEE
Confidence            468899999999977765422    23455555433        11111122234679999999 6654 5556678999


Q ss_pred             EEeCC--CC-cc-----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          452 VWDVT--TQ-QS-----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~--~~-~~-----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +||+.  ++ ..     +..+......+.++++.+ +|.++++...++.|.
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEE
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEE
Confidence            99986  55 32     223333445678899998 888777765555553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.93  E-value=0.0033  Score=60.35  Aligned_cols=111  Identities=11%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEcccc--cc-CCCC--cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASV--VN-EPAD--VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~--~~-~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      .+..|+|+|+++.|+.+..++. ++|.+...  .. .+..  ....+...++.+....++++++ +.++++...++.|.+
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~  273 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-HNIYVGDLAHSAIGV  273 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT-CCEEEEEGGGTEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC-CCEEEEccCCCeEEE
Confidence            4688999999998888776664 55655432  00 0000  0001111223335667899999 899999999999999


Q ss_pred             EeCCCCcceeeccc-ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          453 WDVTTQQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       453 wd~~~~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                      ||..+++....... +-..+.+++|.+ ++.++++.+..+
T Consensus       274 ~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~  312 (343)
T 2qe8_A          274 ITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLH  312 (343)
T ss_dssp             EETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCGG
T ss_pred             EECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCccc
Confidence            99855653222221 245689999999 888888877543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.84  E-value=0.0075  Score=58.68  Aligned_cols=100  Identities=13%  Similarity=-0.075  Sum_probs=67.2

Q ss_pred             EccCCCEEEEEeC--CC---cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CCC
Q 048199          384 FDRDDQLFATAGV--SR---RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YEG  448 (495)
Q Consensus       384 ~~p~~~~l~s~s~--d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~dg  448 (495)
                      ..|+++.++....  ..   +|.+||..++        ..+..+...... .+.|+|| +..++.+.          .++
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p-~i~~spD-g~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP-NPVAAHS-GSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC-CeEECCC-CCEEEEEeccccccccCCCCC
Confidence            3467776555543  22   8899999886        223333322333 8999999 77777765          367


Q ss_pred             cEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199          449 IVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL  494 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~  494 (495)
                      .|.+||..+++.+..+.--       ......++|+| ||++|+.++.  ++.|.
T Consensus        98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~  151 (373)
T 2mad_H           98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVG  151 (373)
T ss_pred             eEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEE
Confidence            8999999988877765321       12345899999 9999988874  35453

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.83  E-value=0.0082  Score=56.40  Aligned_cols=108  Identities=9%  Similarity=-0.090  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE----ecC----
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS----SDY----  446 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s----g~~----  446 (495)
                      +...+.++.|+++|+++++...++.|.+|+.......+.    ..........++.+.++++ +.+++|    |..    
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~----~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLV----GRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE----CEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGG
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEE----eccCCCccCCCCCEEECCC-CCEEEeCcCCCcccccc
Confidence            456789999999999887766678899999762210000    0000001234678999999 888886    442    


Q ss_pred             ---------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          447 ---------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       447 ---------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                               .+.|..||..++......  +....+.++|+| ++..|+.+..+
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~  208 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQTP  208 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEECC
T ss_pred             ccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEecC
Confidence                     256788887666544333  445678899999 98877666544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.72  E-value=0.00067  Score=61.08  Aligned_cols=47  Identities=21%  Similarity=0.665  Sum_probs=38.9

Q ss_pred             ccccccccchhhhcccc-CCCCccchhhHHhhhcCC--CCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK--SDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~   98 (495)
                      ...|.||.++...-+.. .|+|.|+..|+.+|+...  ..||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            45699999999966544 499999999999999765  499999987543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.67  E-value=0.011  Score=53.82  Aligned_cols=106  Identities=9%  Similarity=0.239  Sum_probs=66.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ......|.|+ ++.++.+.+.++  .|+++|+.++        .......-...+......++++.+++..-.++.+.+|
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg--------kv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG--------KTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC--------CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEEECCCC--------cEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            5667899999 678888888876  8999999987        2222222223333322233323344444468899999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |..+++.+.++..-. .-+.++  + ++..|+.+..++.|.
T Consensus       113 D~~t~~~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~  149 (262)
T 3nol_A          113 NIRNLRQVRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLR  149 (262)
T ss_dssp             ETTTCCEEEEEECSS-CCCCEE--E-CSSCEEECCSSSEEE
T ss_pred             ECccCcEEEEEECCC-CceEEe--c-CCCEEEEECCCCeEE
Confidence            999999998887422 224454  4 556665555455554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.61  E-value=0.021  Score=52.01  Aligned_cols=103  Identities=14%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeE--EEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLS--CLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ......|.|+ ++.++.+.+.++.|+++|+.++        ...... -...+.  .+++..  +.++...-.++.+.+|
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tg--------kv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESA--------QPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCS--------SCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCC--------cEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEE
Confidence            4667899998 4678888999999999999997        112222 122333  355543  4555566678899999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |..+++.+.++..- ..-+.+++   ++..|+.+..++.|.
T Consensus       122 D~~Tl~~~~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~  158 (268)
T 3nok_A          122 SGMPPQRERTTRYS-GEGWGLCY---WNGKLVRSDGGTMLT  158 (268)
T ss_dssp             ETTTTEEEEEEECS-SCCCCEEE---ETTEEEEECSSSEEE
T ss_pred             ECCcCcEEEEEeCC-CceeEEec---CCCEEEEECCCCEEE
Confidence            99999999888742 33355654   556666655566654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.61  E-value=0.0041  Score=61.46  Aligned_cols=125  Identities=15%  Similarity=0.085  Sum_probs=79.8

Q ss_pred             HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCC
Q 048199          348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..+.+.|.   ...+.+..+..|     ..+  .+.|+|+++.++.+.          .++.|.++|..+.        .
T Consensus        99 ~~VsVID~---~t~~vv~~I~vG-----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------~  160 (426)
T 3c75_H           99 TQQFVIDG---STGRILGMTDGG-----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------L  160 (426)
T ss_dssp             EEEEEEET---TTTEEEEEEEEC-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------C
T ss_pred             CeEEEEEC---CCCEEEEEEECC-----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------c
Confidence            35666665   344566666653     233  899999999777665          3678999999886        2


Q ss_pred             Ceeec--C------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceeecccccC-------cEEEEEeecCC
Q 048199          418 PVVEM--P------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVMEYEEHEK-------RAWSVDFSRTE  480 (495)
Q Consensus       418 ~~~~~--~------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~~~~h~~-------~v~~v~~~~~~  480 (495)
                      .+..+  .      .......+.|+|| +.+++.+..  ++.|.+.|..+++.+..+.--..       .-.-+.+++ +
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~-d  238 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR-D  238 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-T
T ss_pred             EEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC-C
Confidence            22221  1      0123567899999 888887764  57899999999988777653110       011245666 6


Q ss_pred             CCeEEEeeCCCc
Q 048199          481 PSMLVSGSDDCK  492 (495)
Q Consensus       481 g~~l~s~s~D~~  492 (495)
                      |.+++....++.
T Consensus       239 G~~~~V~~~~~~  250 (426)
T 3c75_H          239 GSLARVDFADGE  250 (426)
T ss_dssp             SSEEEEECCTTC
T ss_pred             CCEEEEECCCCc
Confidence            666555444443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.56  E-value=0.019  Score=61.40  Aligned_cols=111  Identities=9%  Similarity=-0.033  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---  446 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---  446 (495)
                      |...+.++.|+|||++|+..+.++     .|.+||+.++...     .......+........ +|+ +..|+..+.   
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~~~~-~~d-g~~l~~~s~~~~  338 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----PVTALIPDLKAQWDFV-DGV-GDQLWFVSGDGA  338 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-----CCEEEECSSSSCEEEE-EEE-TTEEEEEECTTC
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-----ccEEecCCCCceEEEE-ecc-CCEEEEEECCCC
Confidence            334688999999999888777554     7999998764100     0122223333344443 477 666666554   


Q ss_pred             -CCcEEEEeCCCC--cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 -EGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 -dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       ++.|.+||+.++  .....+.++...+.+++|.  ++.++++...|+..+
T Consensus       339 ~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          339 PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEE
Confidence             345999999875  2333344455667778887  556888888888755

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.53  E-value=0.037  Score=49.82  Aligned_cols=105  Identities=10%  Similarity=0.139  Sum_probs=67.4

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCC--CcEEEEEccccccCCCCcCCCeeecCCCCCe--EEEEEcCCCCCEEEEecCCCcE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVS--RRIKVFDFASVVNEPADVHCPVVEMPTRSKL--SCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      ....+..+.|++ +.++.+.+.+  ..|+++|+.++        .......-...+  -.+++.  ++.++...-.++.+
T Consensus        19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--------kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG--------RILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG   87 (243)
T ss_dssp             TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred             CccccccEEEEC-CEEEEECCCCCCceEEEEECCCC--------CEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence            356788999987 6777777775  48999999987        222222222222  234443  24455556678899


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+||..+.+.+.++..- ..-+.+++   ++..|+.+..++.|.
T Consensus        88 ~v~D~~tl~~~~ti~~~-~~Gwglt~---dg~~L~vSdgs~~l~  127 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYP-GEGWALTS---DDSHLYMSDGTAVIR  127 (243)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCEEEE---CSSCEEEECSSSEEE
T ss_pred             EEEECCcCcEEEEEeCC-CCceEEee---CCCEEEEECCCCeEE
Confidence            99999999999888743 23356654   455554444466554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.16  E-value=0.11  Score=50.62  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=78.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC------cCCCeeecC-----CCCCeEEEEEcCCC--CCEEEEe
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD------VHCPVVEMP-----TRSKLSCLSWNKFS--KNRIASS  444 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~------~~~~~~~~~-----~~~~i~~~~~~p~~--~~~l~sg  444 (495)
                      .|..+..+|+|++||..+ +..|.|-.+..+......      ........+     ...+|..+.|||-+  +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            467899999999999886 679999999854211110      000011111     35679999999983  4589999


Q ss_pred             cCCCcEEEEeCCCCc--ceeec---------ccccCcEEEEEeecCCCCeEEEee--CCCcEe
Q 048199          445 DYEGIVTVWDVTTQQ--SVMEY---------EEHEKRAWSVDFSRTEPSMLVSGS--DDCKVL  494 (495)
Q Consensus       445 ~~dg~v~iwd~~~~~--~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s--~D~~v~  494 (495)
                      ..|++|++||+....  +. .+         ..+...|.+++|.. +|-.|...+  ..|-|+
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEE
Confidence            999999999998532  22 22         12235788999999 887777744  777764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.13  E-value=0.031  Score=59.18  Aligned_cols=132  Identities=10%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-------------EEEEEccccc
Q 048199          343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-------------IKVFDFASVV  409 (495)
Q Consensus       343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-------------i~vwd~~~~~  409 (495)
                      .|++...+.+|++.. .+.... .+.     +  ....+++|+ |++.|+.++.+..             |++|++.+..
T Consensus       150 ~G~~~~~i~v~dl~t-g~~~~~-~~~-----~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          150 AGSDWREIHLMDVES-KQPLET-PLK-----D--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ  219 (693)
T ss_dssp             SSCCEEEEEEEETTT-CSEEEE-EEE-----E--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG
T ss_pred             CCCceEEEEEEECCC-CCCCcc-ccC-----C--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc
Confidence            466667788888742 221111 111     1  112467899 9999888887754             9999987751


Q ss_pred             cCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEE-Eec---CCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCC
Q 048199          410 NEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIA-SSD---YEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPS  482 (495)
Q Consensus       410 ~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~-sg~---~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~  482 (495)
                      ..    ...+....  +...+.++.|+|| +.+|+ +.+   .+..|.+||+.++. ....+..+....... |++.++.
T Consensus       220 ~~----~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~  293 (693)
T 3iuj_A          220 ED----DRLVFGAIPAQHHRYVGATVTED-DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGST  293 (693)
T ss_dssp             GG----CEEEESCSGGGCCSEEEEEECTT-SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTE
T ss_pred             cc----ceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCE
Confidence            10    01111111  2335788999999 66654 333   23479999998764 456666666666555 5551344


Q ss_pred             eEEEeeCC
Q 048199          483 MLVSGSDD  490 (495)
Q Consensus       483 ~l~s~s~D  490 (495)
                      +++++..|
T Consensus       294 l~~~t~~~  301 (693)
T 3iuj_A          294 LYLLTNRD  301 (693)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            44454443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.10  E-value=0.0098  Score=57.60  Aligned_cols=88  Identities=11%  Similarity=-0.118  Sum_probs=62.0

Q ss_pred             EEEEEeCCC----cEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEec----------CCCcEEEEe
Q 048199          390 LFATAGVSR----RIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSD----------YEGIVTVWD  454 (495)
Q Consensus       390 ~l~s~s~d~----~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~----------~dg~v~iwd  454 (495)
                      .+++...+.    +|.++|..++        ..+..+. ...+  .+.++|| +..++.+.          .+++|.+||
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~--------~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD  102 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCG--------VTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             EEEECCccCCccceEEEEECCCC--------eEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEE
Confidence            444555444    7889999886        2333332 2223  7999999 66666664          368999999


Q ss_pred             CCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC
Q 048199          455 VTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       455 ~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..+++.+.++.-.       ......++|+| ||++|+.+..
T Consensus       103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~  143 (368)
T 1mda_H          103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLF  143 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEEC
T ss_pred             CCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEcc
Confidence            9999999888533       12356799999 9999888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.93  E-value=0.01  Score=60.53  Aligned_cols=109  Identities=13%  Similarity=0.110  Sum_probs=72.9

Q ss_pred             EEEEEEccCCCEEEE-EeCCCcEEEEEccccc----cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          379 VSSIEFDRDDQLFAT-AGVSRRIKVFDFASVV----NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       379 V~~l~~~p~~~~l~s-~s~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .-++.|+|||++++. +..+.+|.++|+.+..    ..+......+....-....+.++|+|+ |..+.+.-.|+.|.+|
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~d-G~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGR-GNAYTSLFLDSQVVKW  357 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTT-SEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCC-CeEEEEEecCCcEEEE
Confidence            347899999996665 4578999999999641    011111122334444567899999999 6656677789999999


Q ss_pred             eCCC----------CcceeecccccCcE-----EEEEeecCCCCeEEEeeC
Q 048199          454 DVTT----------QQSVMEYEEHEKRA-----WSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       454 d~~~----------~~~~~~~~~h~~~v-----~~v~~~~~~g~~l~s~s~  489 (495)
                      |+.+          ...+..+..|-.+-     .++.+++ ||++|++...
T Consensus       358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk  407 (595)
T 1fwx_A          358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSK  407 (595)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEES
T ss_pred             EhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCC
Confidence            9876          34455555443321     2235578 9999988864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.92  E-value=0.014  Score=57.62  Aligned_cols=98  Identities=12%  Similarity=-0.059  Sum_probs=65.6

Q ss_pred             cCCCEEEEE-eCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CCCcE
Q 048199          386 RDDQLFATA-GVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YEGIV  450 (495)
Q Consensus       386 p~~~~l~s~-s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~dg~v  450 (495)
                      |+++.++.+ ..+    ++|.++|..+.        ..+..+.-.... .+.++|| +..++.+.          .++.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P-gia~SpD-gk~lyVan~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP-HPVAAED-GSFFAQASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC-EEEECTT-SSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC-ceEECCC-CCEEEEEeccccccccCCCCCEE
Confidence            355544443 333    69999999886        333333222233 8999999 66666655          36789


Q ss_pred             EEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199          451 TVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL  494 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~  494 (495)
                      .++|..+++.+..+.--       ......+.|+| ||++|+.+..  ++.|.
T Consensus       152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~Vs  203 (426)
T 3c75_H          152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVG  203 (426)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEE
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEE
Confidence            99999999888776421       12345789999 9999988774  45553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.92  E-value=0.22  Score=45.33  Aligned_cols=101  Identities=8%  Similarity=-0.006  Sum_probs=65.2

Q ss_pred             cEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          378 IVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       378 ~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .+.+++|++++ .++++....+.|.+++....        ...... ........++++++++.++++-..++.|.++|.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--------~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSC--------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCC--------CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence            36799999965 45556667789999998764        111111 222468899999974556666667789999998


Q ss_pred             CCCcceeeccc-ccCcEEEEEeecCCCCeEEEee
Q 048199          456 TTQQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       456 ~~~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ... ....+.. .......++++| ++..|+.+.
T Consensus       109 ~g~-~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~  140 (267)
T 1npe_A          109 DGT-QRRVLFDTGLVNPRGIVTDP-VRGNLYWTD  140 (267)
T ss_dssp             TSC-SCEEEECSSCSSEEEEEEET-TTTEEEEEE
T ss_pred             CCC-CEEEEEECCCCCccEEEEee-CCCEEEEEE
Confidence            643 2222221 224568899998 555444333

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.78  E-value=0.0014  Score=63.83  Aligned_cols=70  Identities=3%  Similarity=-0.015  Sum_probs=42.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE  466 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~  466 (495)
                      ++..+++++.|+.|..||..++.        ..-.+.. +.+.+..+..+ +.++++++.||.|..||..+|+.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~--------~~W~~~~-~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS--------IKWTLKE-DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC--------EEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--------EEEEecC-CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            57788899999999999999871        1111111 23333444455 66788888999999999998887665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.74  E-value=0.024  Score=54.86  Aligned_cols=88  Identities=6%  Similarity=-0.011  Sum_probs=62.1

Q ss_pred             EEEccCCCEEEEEeC---------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEE
Q 048199          382 IEFDRDDQLFATAGV---------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVT  451 (495)
Q Consensus       382 l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~  451 (495)
                      +.|+|+++.++.+..         +..+.+||+.+.        ..+..+.-....+.+.|+||+..++++.. .++.|.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--------~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC--------eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence            679999887665432         235669999886        22333322235889999999444677777 599999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeec
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      ++|+.+++.+.++.... ..+.+++.+
T Consensus       341 VID~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          341 IYDAASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred             EEECCCCcEEEEEECCC-CCCEEEeec
Confidence            99999999999987554 345666653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.55  E-value=0.27  Score=44.67  Aligned_cols=109  Identities=11%  Similarity=-0.015  Sum_probs=67.0

Q ss_pred             CcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC--CCcEEEE
Q 048199          377 NIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--EGIVTVW  453 (495)
Q Consensus       377 ~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iw  453 (495)
                      .....++++|++ .++++....+.|.+++++...       ..............++++|+++.++++...  .+.|..+
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            467899999964 556666667899999987531       111111122467899999973544444433  4688888


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeE-EEeeCCCcEe
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSML-VSGSDDCKVL  494 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~  494 (495)
                      ++. +.....+. ..-.....++|++ ++..| ++....+.|.
T Consensus       152 ~~d-g~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          152 HMD-GTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             ETT-SCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEE
T ss_pred             ecC-CCCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEE
Confidence            876 43333332 2234678999999 66555 4444455553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.45  E-value=0.042  Score=58.72  Aligned_cols=100  Identities=16%  Similarity=0.031  Sum_probs=63.0

Q ss_pred             cEEEEEEc-cCCCEEEEEeC-CC----cEEEEEcccc-ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC---
Q 048199          378 IVSSIEFD-RDDQLFATAGV-SR----RIKVFDFASV-VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE---  447 (495)
Q Consensus       378 ~V~~l~~~-p~~~~l~s~s~-d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d---  447 (495)
                      .+.+..|+ |||++|+.+.. +|    +|+++|+.++ .. +.   ..+..     ....+.|+|| +..|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~---~~~~~-----~~~~~~WspD-g~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA---DKVSG-----TNGEIVWGPD-HTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC---CCEEE-----ECSCCEECSS-TTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC---ccccC-----ceeeEEEecC-CCEEEEEEECCCC
Confidence            67889999 99998775432 22    4999999876 21 10   11111     1246789999 6555554544   


Q ss_pred             --CcEEEEeCCCCcce--eecc-cccCcEEEEEeecCCCCeEEEee
Q 048199          448 --GIVTVWDVTTQQSV--MEYE-EHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       448 --g~v~iwd~~~~~~~--~~~~-~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                        ..|.+|++.++...  ..+. .+.....++.|+| ||.+|+..+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~  289 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGS  289 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEe
Confidence              25788888776432  2332 2234566889999 998877655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.27  E-value=0.09  Score=48.15  Aligned_cols=130  Identities=9%  Similarity=-0.038  Sum_probs=79.9

Q ss_pred             chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-
Q 048199          344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-  422 (495)
Q Consensus       344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-  422 (495)
                      ...+..+.++|..   ..+.+..+..+     ...=+.  +.++|..++.+..+++|.++|..+.        .....+ 
T Consensus        82 t~~~~~v~viD~~---t~~v~~~i~~g-----~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~--------~v~~~I~  143 (266)
T 2iwa_A           82 VWLKNIGFIYDRR---TLSNIKNFTHQ-----MKDGWG--LATDGKILYGSDGTSILYEIDPHTF--------KLIKKHN  143 (266)
T ss_dssp             ETTCSEEEEEETT---TTEEEEEEECC-----SSSCCE--EEECSSSEEEECSSSEEEEECTTTC--------CEEEEEE
T ss_pred             EecCCEEEEEECC---CCcEEEEEECC-----CCCeEE--EEECCCEEEEECCCCeEEEEECCCC--------cEEEEEE
Confidence            3334455555552   34455556543     111123  4457776666667889999999875        111111 


Q ss_pred             -C----CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------------cCcEEEEEeecCCCC-e
Q 048199          423 -P----TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPS-M  483 (495)
Q Consensus       423 -~----~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~-~  483 (495)
                       +    .-..++.+.|. + +.+++....++.|.+-|..+++.+..+.-.             ....+.|+|+| ++. +
T Consensus       144 Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~l  220 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRI  220 (266)
T ss_dssp             CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEE
T ss_pred             ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEE
Confidence             1    11247788888 5 655566556789999999999988877521             13568999999 665 5


Q ss_pred             EEEeeCCCcEe
Q 048199          484 LVSGSDDCKVL  494 (495)
Q Consensus       484 l~s~s~D~~v~  494 (495)
                      ++++....+|.
T Consensus       221 fVTgk~~~~v~  231 (266)
T 2iwa_A          221 FVTGKLWPKLF  231 (266)
T ss_dssp             EEEETTCSEEE
T ss_pred             EEECCCCCeEE
Confidence            56665565553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.15  E-value=0.026  Score=59.70  Aligned_cols=81  Identities=14%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEe
Q 048199          398 RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDF  476 (495)
Q Consensus       398 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~  476 (495)
                      ++|..||+.++.        .+-...+...++.-.+... +.+++.|+.||.|+.||.++|+.+..+...... ..-+.|
T Consensus       455 g~l~A~D~~tG~--------~~W~~~~~~~~~~g~~~ta-gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty  525 (689)
T 1yiq_A          455 GKLIAWDPVKQQ--------AAWEVPYVTIFNGGTLSTA-GNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY  525 (689)
T ss_dssp             EEEEEEETTTTE--------EEEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             eeEEEEECCCCC--------eEeEccCCCCccCccceEC-CCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence            668888887761        1111111222222244445 678899999999999999999999888754322 233556


Q ss_pred             ecCCCC-eEEEee
Q 048199          477 SRTEPS-MLVSGS  488 (495)
Q Consensus       477 ~~~~g~-~l~s~s  488 (495)
                      .. +|. +++..+
T Consensus       526 ~~-~G~qyv~~~~  537 (689)
T 1yiq_A          526 SV-DGEQYVTFMA  537 (689)
T ss_dssp             EE-TTEEEEEEEE
T ss_pred             EE-CCEEEEEEEe
Confidence            66 766 444333

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.0085  Score=56.67  Aligned_cols=64  Identities=20%  Similarity=0.411  Sum_probs=48.7

Q ss_pred             CCccccccccchhhhcc-ccCCCCccchhhH--HhhhcCC--CCCCCCCCcCccCCCcchHHHHHHHHH
Q 048199           50 DKDMLCPICMQIIKEAF-LTACGHSFCYMCI--ITHLRNK--SDCPCCGHYLTNNQLYPNFLLDKLLKK  113 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci--~~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~v~~  113 (495)
                      .-.|.|||.+..+..|+ ...|.|.-|....  ..+....  -.||+|.+.+...+|.....+..++..
T Consensus       247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            44689999999999998 6789999777642  2222222  389999999999999888777776553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.09  E-value=0.12  Score=50.84  Aligned_cols=138  Identities=13%  Similarity=0.159  Sum_probs=86.5

Q ss_pred             cccchhhHHhhhhhhhcc-cCceEEEEeecccccc--CCCcEEEEEEccCCCEEEEEeCC------CcEEEEEccccccC
Q 048199          341 YNAGLADFQSVLTTFTRY-SRLRVIAELRHGDIFH--SANIVSSIEFDRDDQLFATAGVS------RRIKVFDFASVVNE  411 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~-~~~~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~l~s~s~d------~~i~vwd~~~~~~~  411 (495)
                      ++.|..+.+|.++|+... .+.+.+.++...++..  ....-..+.+.|+| +++++..+      +.|.++|..+.   
T Consensus        99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~---  174 (462)
T 2ece_A           99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF---  174 (462)
T ss_dssp             EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC---
T ss_pred             EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC---
Confidence            456777778888887422 2334444453222210  11123456778999 77777666      78999999876   


Q ss_pred             CCCcCCCeeecC---C-CCCeEEEEEcCCCCCEEEEec-------------------CCCcEEEEeCCCCcceeecccc-
Q 048199          412 PADVHCPVVEMP---T-RSKLSCLSWNKFSKNRIASSD-------------------YEGIVTVWDVTTQQSVMEYEEH-  467 (495)
Q Consensus       412 ~~~~~~~~~~~~---~-~~~i~~~~~~p~~~~~l~sg~-------------------~dg~v~iwd~~~~~~~~~~~~h-  467 (495)
                           ..+..+.   . ..-.+.+-|+|+ ++.+++..                   .+.+|.+||+.+++.+.++.-- 
T Consensus       175 -----~v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          175 -----EPLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             -----CEEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             -----eEEEEEccCCCCccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence                 2222221   1 112346888999 78888885                   4689999999988877777532 


Q ss_pred             -cCcEEEEEe--ecCCCCeEEEeeC
Q 048199          468 -EKRAWSVDF--SRTEPSMLVSGSD  489 (495)
Q Consensus       468 -~~~v~~v~~--~~~~g~~l~s~s~  489 (495)
                       ......+.|  +| ++.+++.++.
T Consensus       249 ~g~~P~~i~f~~~P-dg~~aYV~~e  272 (462)
T 2ece_A          249 ENRMALELRPLHDP-TKLMGFINMV  272 (462)
T ss_dssp             TEEEEEEEEECSST-TCCEEEEEEE
T ss_pred             CCCccceeEeeECC-CCCEEEEEEe
Confidence             123445555  89 8888777663

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.02  E-value=0.24  Score=49.00  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CCcEEEEEEccCCCEEEEEeC-CC----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199          376 ANIVSSIEFDRDDQLFATAGV-SR----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v  450 (495)
                      ......|+|+++++.|+.+.. ++    .+.+++.....       .....+........++++|+++.++++-..++.|
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~-------~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V  250 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF-------KVITELTKGQNCNGAETHPINGELYFNSWNAGQV  250 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS-------CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce-------eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            456789999999995444433 22    23334433221       1001111223467889999548788887788899


Q ss_pred             EEEeCCCCcceeecc-cccCcEEEEEeecCCCCe-EEEeeCCCcEe
Q 048199          451 TVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSM-LVSGSDDCKVL  494 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~-l~s~s~D~~v~  494 (495)
                      ..||...+.....+. +.....+.++|+| +|.+ +++-...+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEE
Confidence            999988654322111 1124567899999 8884 45544555553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.90  E-value=0.42  Score=45.63  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=69.5

Q ss_pred             CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199          377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd  454 (495)
                      ....++++++ .++++++-...+.|.+++++..       ...+...........++++|.++.++++-..+ +.|..+|
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-------~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-------ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            3456899997 4566677777889999998764       11112222335678999999756666666555 7899998


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +. |.....+. ..-...+.|+|++.++.+.++-+..+.|
T Consensus       189 ~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          189 MD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             TT-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CC-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence            76 44333332 2344678999998344444554445544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=94.86  E-value=0.034  Score=58.68  Aligned_cols=78  Identities=12%  Similarity=0.067  Sum_probs=49.6

Q ss_pred             CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-CcEEEEEe
Q 048199          398 RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-KRAWSVDF  476 (495)
Q Consensus       398 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~  476 (495)
                      +.|..||+.++.        .+-...+...+++..+..+ +.+++.|+.||.+++||..+|+.+.++.... ....-+.|
T Consensus       457 g~l~A~D~~tG~--------~~W~~~~~~~~~~g~~~~~-g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y  527 (677)
T 1kb0_A          457 GRLLAWDPVAQK--------AAWSVEHVSPWNGGTLTTA-GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY  527 (677)
T ss_dssp             EEEEEEETTTTE--------EEEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             cEEEEEeCCCCc--------EEeecCCCCCCcCcceEeC-CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEE
Confidence            678888888761        1111122223344445555 6688889999999999999999998887432 22233455


Q ss_pred             ecCCCCeEE
Q 048199          477 SRTEPSMLV  485 (495)
Q Consensus       477 ~~~~g~~l~  485 (495)
                      .. +|..++
T Consensus       528 ~~-~G~~~v  535 (677)
T 1kb0_A          528 MV-DGRQYV  535 (677)
T ss_dssp             EE-TTEEEE
T ss_pred             Ee-CCEEEE
Confidence            56 665443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.69  E-value=0.52  Score=44.99  Aligned_cols=110  Identities=7%  Similarity=0.035  Sum_probs=68.2

Q ss_pred             CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ..+.+++|++. +.++.+-...+.|..+++....       ..............+++++.++.++++-...+.|.+++.
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            44789999975 4555666678889999987651       111111122345688888765667777777889999998


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCC-CcE
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD-CKV  493 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D-~~v  493 (495)
                      ........+...-.....+++.|.++.++++-..+ +.|
T Consensus       146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            74332222323335578899998445445554433 444

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=94.69  E-value=0.026  Score=40.78  Aligned_cols=47  Identities=28%  Similarity=0.693  Sum_probs=35.9

Q ss_pred             ccccccccchhh-----hcccc--CCCCccchhhHHhhhc-CCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIK-----EAFLT--ACGHSFCYMCIITHLR-NKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~-----~Pv~l--~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~   98 (495)
                      .-.|.||++..-     +|.+.  .|+-..|+.|.+--.. ....||+|+.++..
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr   70 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence            357999999864     34433  6999999999985444 45799999998863

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.68  E-value=0.49  Score=44.04  Aligned_cols=106  Identities=10%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-C-cEEEEe
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-G-IVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g-~v~iwd  454 (495)
                      ....+++|+++++++++...++.|..||....         ..........+..+++.++ +.++++.... + .|..+|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEeCCCCceeEEEcCC-CcEEEEeccCCcceEEEEc
Confidence            45679999999998888778899999987654         1111222346889999999 7766655432 2 466777


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ..++....... ........+++.+ ++..+++.+.++.|
T Consensus       102 ~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i  140 (306)
T 2p4o_A          102 KSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAI  140 (306)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEE
T ss_pred             CCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeE
Confidence            77765432111 1122234444444 44444444445544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.68  E-value=0.22  Score=45.31  Aligned_cols=96  Identities=9%  Similarity=-0.065  Sum_probs=62.6

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CC---CCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PT---RSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +.++  +++..|+.+..+.+|.++|..+.        ..+..+   ..   -..++.+.|. + +.+++....+..|.+-
T Consensus       139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~--------~v~~~I~V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vI  206 (268)
T 3nok_A          139 WGLC--YWNGKLVRSDGGTMLTFHEPDGF--------ALVGAVQVKLRGQPVELINELECA-N-GVIYANIWHSSDVLEI  206 (268)
T ss_dssp             CCEE--EETTEEEEECSSSEEEEECTTTC--------CEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEE
T ss_pred             eEEe--cCCCEEEEECCCCEEEEEcCCCC--------eEEEEEEeCCCCcccccccccEEe-C-CEEEEEECCCCeEEEE
Confidence            3444  45676666666889999998875        111111   11   1246778887 4 6555555567899999


Q ss_pred             eCCCCcceeecccc-------------cCcEEEEEeecCCCCeEEEe
Q 048199          454 DVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       454 d~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~~l~s~  487 (495)
                      |..+|+.+..+.-.             .+..+.|+|.|....+++||
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999887766421             24678999999444555555

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.55  E-value=0.015  Score=54.85  Aligned_cols=64  Identities=20%  Similarity=0.424  Sum_probs=48.2

Q ss_pred             CCCccccccccchhhhcc-ccCCCCccchhhHH--hhhcCC--CCCCCCCCcCccCCCcchHHHHHHHH
Q 048199           49 LDKDMLCPICMQIIKEAF-LTACGHSFCYMCII--THLRNK--SDCPCCGHYLTNNQLYPNFLLDKLLK  112 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~--~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~v~  112 (495)
                      +.-.|.|||.+..++.|+ ...|.|.-|.....  ......  -.||+|++.+...+|.....+..++.
T Consensus       212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~  280 (360)
T 4fo9_A          212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN  280 (360)
T ss_dssp             EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred             eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence            344688999999999998 67899997766432  222222  38999999999999988877776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.41  E-value=0.39  Score=43.09  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec--C-C-
Q 048199          349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM--P-T-  424 (495)
Q Consensus       349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~-~-  424 (495)
                      .+.++|.   ..+..+.++..+    ..+  +.++  +++..|+.+..+.+|.++|..+.        .....+  . + 
T Consensus        86 ~v~v~D~---~tl~~~~ti~~~----~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~--------~~~~~I~V~~~g  146 (243)
T 3mbr_X           86 EGFVYDL---ATLTPRARFRYP----GEG--WALT--SDDSHLYMSDGTAVIRKLDPDTL--------QQVGSIKVTAGG  146 (243)
T ss_dssp             EEEEEET---TTTEEEEEEECS----SCC--CEEE--ECSSCEEEECSSSEEEEECTTTC--------CEEEEEECEETT
T ss_pred             EEEEEEC---CcCcEEEEEeCC----CCc--eEEe--eCCCEEEEECCCCeEEEEeCCCC--------eEEEEEEEccCC
Confidence            4444444   334555555542    112  4554  45665555555888999998875        111111  1 1 


Q ss_pred             --CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------------cCcEEEEEeecCCCCeEEEee
Q 048199          425 --RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       425 --~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~~l~s~s  488 (495)
                        -..++-+.|. + +.+++....+..|.+.|..+|+.+..+.-.             .+..++|+|+| ++..|+..+
T Consensus       147 ~~~~~lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTG  222 (243)
T 3mbr_X          147 RPLDNLNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTG  222 (243)
T ss_dssp             EECCCEEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEE
T ss_pred             cccccceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEEC
Confidence              1346677776 3 555555546779999999999887766411             23678999999 555554444

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=94.19  E-value=0.017  Score=40.57  Aligned_cols=35  Identities=23%  Similarity=0.809  Sum_probs=29.8

Q ss_pred             CccccccccchhhhccccCC----CCccchhhHHhhhcC
Q 048199           51 KDMLCPICMQIIKEAFLTAC----GHSFCYMCIITHLRN   85 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~C----GH~FC~~Ci~~~~~~   85 (495)
                      ..|.|.+|.+.+.|-....|    +|-||..|-..+++.
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence            35889999999999865554    999999999988875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.01  E-value=0.58  Score=45.36  Aligned_cols=108  Identities=7%  Similarity=0.023  Sum_probs=66.4

Q ss_pred             CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...+.+++|++. +.++++-...+.|..|++....       ..............+++++.++.++++-...+.|.+++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            345789999974 5566666678889999987651       11111112234567888876466777777788899999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .........+...-.....+++.|.++.++++-..+
T Consensus       188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC
Confidence            874332222333335678899988344444444333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.97  E-value=0.88  Score=42.63  Aligned_cols=109  Identities=9%  Similarity=0.004  Sum_probs=67.2

Q ss_pred             CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199          377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd  454 (495)
                      ....++++++ .++++++-...+.|.++++...       ...............++++|.++.++++.... +.|..++
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            3457899987 4556667677889999998754       11111112335678999999745555555443 6888888


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +. |.....+. ..-...+.++|++.++.++++-+..+.|
T Consensus       150 ~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          150 LN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             TT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            75 44444332 2335678999998334444444444444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.94  E-value=0.47  Score=46.00  Aligned_cols=108  Identities=11%  Similarity=0.064  Sum_probs=67.1

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEeC
Q 048199          378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWDV  455 (495)
Q Consensus       378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd~  455 (495)
                      ....|++++ .+.++++-...+.|.+++++..       ...+...........++++|.++.++++-..+ +.|..+|+
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSC-------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            456788997 4556667777788888888754       11112222335679999999855555555555 78888887


Q ss_pred             CCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          456 TTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       456 ~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      . |.....+ ...-...+.|+|++.++.+.++-+..+.|
T Consensus       233 d-G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I  270 (386)
T 3v65_B          233 D-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  270 (386)
T ss_dssp             T-SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred             C-CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence            6 4333333 22344678999997344444555455554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=93.85  E-value=0.21  Score=49.11  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             CcEEEEEEccCCCEEEEEe-------------------CCCcEEEEEccccccCCCCcCCCeee--cC-CCCCeEEEEE-
Q 048199          377 NIVSSIEFDRDDQLFATAG-------------------VSRRIKVFDFASVVNEPADVHCPVVE--MP-TRSKLSCLSW-  433 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~-  433 (495)
                      ..-+++.|+|+++.++++.                   .+.+|.+||+.++        ..+..  .+ .......+.| 
T Consensus       188 ~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--------k~~~tI~vg~~g~~P~~i~f~  259 (462)
T 2ece_A          188 YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--------KRIHSLTLGEENRMALELRPL  259 (462)
T ss_dssp             CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--------EEEEEEESCTTEEEEEEEEEC
T ss_pred             cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--------cEeeEEecCCCCCccceeEee
Confidence            3345788999999988885                   3789999999875        11222  22 1123455555 


Q ss_pred             -cCCCCCEEEEec------CCCcEEEEeCCCCcc--eee-----------c-------ccccCcEEEEEeecCCCCeEEE
Q 048199          434 -NKFSKNRIASSD------YEGIVTVWDVTTQQS--VME-----------Y-------EEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       434 -~p~~~~~l~sg~------~dg~v~iwd~~~~~~--~~~-----------~-------~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                       +|+ +.+++.++      .+++|.+|....+..  .+.           +       .+-......|.+++ ||++|..
T Consensus       260 ~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYV  337 (462)
T 2ece_A          260 HDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYL  337 (462)
T ss_dssp             SSTT-CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEE
T ss_pred             ECCC-CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CCCEEEE
Confidence             999 77776666      566887765443310  010           1       01123467889999 9998877


Q ss_pred             eeC-CCcE
Q 048199          487 GSD-DCKV  493 (495)
Q Consensus       487 ~s~-D~~v  493 (495)
                      +.. .+.|
T Consensus       338 Snrg~d~V  345 (462)
T 2ece_A          338 SLWGIGEV  345 (462)
T ss_dssp             EETTTTEE
T ss_pred             EeCCCCEE
Confidence            765 4444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.79  E-value=0.19  Score=44.32  Aligned_cols=106  Identities=6%  Similarity=-0.091  Sum_probs=60.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC--CCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT--RSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .+.+++|||+|.+.+.  .++.+.-.+..+...  .........++.  -....++-|+|+ +.+.++  .||.|.-|+-
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~-G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPN-GYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTT-SCEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCC-CCEEEe--CCCEEEEeCC
Confidence            5679999999987766  566554444433100  000000111111  111468889998 777766  5699988886


Q ss_pred             CCCccee-----ecccc--cCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          456 TTQQSVM-----EYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       456 ~~~~~~~-----~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .+...-.     +..+.  =..+..|.|.| +|.+.+..  |+.+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~l  156 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQF  156 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcE
Confidence            4422111     11111  13578999999 98776666  6655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.78  E-value=0.49  Score=42.90  Aligned_cols=97  Identities=13%  Similarity=0.081  Sum_probs=60.3

Q ss_pred             cCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC-CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199          386 RDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT-RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       386 p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~  464 (495)
                      +++..|+.+..+.+|.++|..+... ..  .-.+...+. ...++.+.|. + +.+++..-.+..|.+.|..+|+.+..+
T Consensus       134 ~dg~~L~~SdGs~~i~~iDp~T~~v-~~--~I~V~~~g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          134 HNDQYLIMSDGTPVLRFLDPESLTP-VR--TITVTAHGEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             ECSSCEEECCSSSEEEEECTTTCSE-EE--EEECEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             cCCCEEEEECCCCeEEEEcCCCCeE-EE--EEEeccCCccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEE
Confidence            4666555555578899999887510 00  001111011 1345677887 4 656655556889999999999887766


Q ss_pred             ccc------------cCcEEEEEeecCCCCeEEEee
Q 048199          465 EEH------------EKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       465 ~~h------------~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      .-.            ....+.|+|+| ++..|+.++
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG  243 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG  243 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred             ECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence            431            23668999999 666555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.54  E-value=1.2  Score=41.59  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=63.2

Q ss_pred             CCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .....+++|++.+ .++++-...+.|..+++......    ....... .....+..+++++.++.++++-..++.|.++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence            3457899999854 56666667789999998762000    0111111 1223457888887646666776778899999


Q ss_pred             eCCCCcceeec-ccccCcEEEEEeecCCCCeEEEe
Q 048199          454 DVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       454 d~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      |... .....+ ...-.....+++.|.++.++++.
T Consensus       105 ~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A          105 DTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             eCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence            9874 333333 22334678899988344444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.41  E-value=1.3  Score=43.12  Aligned_cols=110  Identities=9%  Similarity=0.006  Sum_probs=68.2

Q ss_pred             CCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEE
Q 048199          376 ANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iw  453 (495)
                      .....+|++++ .++++++-...+.|.+.+++..       ...+...........++++|..+.++++-.. .+.|...
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            35678999998 5667777777889999998764       1111111233457899999974545555433 3789888


Q ss_pred             eCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 DVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 d~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ++. |.....+ ...-...+.|+|++.++.+.++-+..+.|
T Consensus       231 ~~d-G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          231 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             ETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eCC-CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            876 4433333 22335678999998344444444444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.37  E-value=0.43  Score=50.83  Aligned_cols=105  Identities=8%  Similarity=0.058  Sum_probs=60.5

Q ss_pred             EEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcEE
Q 048199          380 SSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIVT  451 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v~  451 (495)
                      .++.|+|||+.|+....|.     .|.++++.++...    ...+...........+.|+|| +.+|+..+.   ...|.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~----~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~  298 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSE----DVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQSPETAEVH  298 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGG----CEEEEECCCTTCEEEEEECTT-SSEEEEEEECSSCEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchh----cEEEEecCCCceEEEEEECCC-CCEEEEEecCCCCceEE
Confidence            4688999998877776652     4677777654100    011111122334678899999 776655442   33588


Q ss_pred             EEeCCCCc--c--eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          452 VWDVTTQQ--S--VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       452 iwd~~~~~--~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ++|+.++.  .  .....+.....+++.|+. ++.+++.+..+
T Consensus       299 ~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~  340 (751)
T 2xe4_A          299 LLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEG  340 (751)
T ss_dssp             EEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTT
T ss_pred             EEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCC
Confidence            88988752  2  223333455667777664 44444444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.27  E-value=1.1  Score=42.07  Aligned_cols=112  Identities=10%  Similarity=0.081  Sum_probs=70.6

Q ss_pred             cEEEEEE---ccCCCEEEEEe-------------CCCcEEEEEcc---ccccCCC-CcCCCeee-----cC-CCCCeEEE
Q 048199          378 IVSSIEF---DRDDQLFATAG-------------VSRRIKVFDFA---SVVNEPA-DVHCPVVE-----MP-TRSKLSCL  431 (495)
Q Consensus       378 ~V~~l~~---~p~~~~l~s~s-------------~d~~i~vwd~~---~~~~~~~-~~~~~~~~-----~~-~~~~i~~~  431 (495)
                      .+..|.|   +|++.++++..             .+..|..||+.   ++..... .. ..+..     .+ .......+
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL-~~~~~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF-EKVQDEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEES-HHHHHHHHHHHSSCCEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecC-ccccccccccccccccCCcee
Confidence            4689999   68888877543             26779999998   5411100 00 00000     00 12347899


Q ss_pred             EEcCCCCCEEEEecCC-CcEEEEeCCCCcceeeccc------ccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          432 SWNKFSKNRIASSDYE-GIVTVWDVTTQQSVMEYEE------HEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       432 ~~~p~~~~~l~sg~~d-g~v~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +..++ |+..++++.. +.|..+|.. |..+..+.-      .....+.++++| +|+.|+....++.+
T Consensus       143 avD~~-GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L  208 (334)
T 2p9w_A          143 AQDRD-GNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRAL  208 (334)
T ss_dssp             EECTT-SCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSE
T ss_pred             EECCC-CCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeE
Confidence            99999 9999999888 887777765 443333321      122367999999 99887777556655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.11  E-value=0.39  Score=48.95  Aligned_cols=64  Identities=20%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc------------ceeecccccCcEEEEEeecCCCCeEEEe-eCCCcE
Q 048199          427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ------------SVMEYEEHEKRAWSVDFSRTEPSMLVSG-SDDCKV  493 (495)
Q Consensus       427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~-s~D~~v  493 (495)
                      ...++.++||+...++++..+.+|.++|+.+..            .+.... -....+.++|++ +| ++++. --|+.|
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG-~aY~t~~ldsqV  354 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RG-NAYTSLFLDSQV  354 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TS-EEEEEETTTTEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CC-eEEEEEecCCcE
Confidence            456899999944456667788899999998653            122222 234578899999 98 55444 346655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.85  E-value=0.19  Score=52.98  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          448 GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      |.|..||+.+++.+-.+. +..++++..+.. .+.+++.++.|+.|+
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLV  501 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEE
Confidence            789999999999887775 344555566666 777888889999876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.84  E-value=2.1  Score=38.65  Aligned_cols=107  Identities=12%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             cCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      +-...+..++|+|++. +++....++.|...|....  .     .....+......-.+++.++ +.++++.-.++.+.+
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~--v-----~~~i~l~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD--L-----IRTIPLDFVKDLETIEYIGD-NQFVISDERDYAIYV   95 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC--E-----EEEEECSSCSSEEEEEECST-TEEEEEETTTTEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC--E-----EEEEecCCCCChHHeEEeCC-CEEEEEECCCCcEEE
Confidence            4456799999999765 5555667788888887722  0     11111233356888999988 667677666788999


Q ss_pred             EeCCCCcc---eeecc------cccCcEEEEEeecCCCCeEEEeeC
Q 048199          453 WDVTTQQS---VMEYE------EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       453 wd~~~~~~---~~~~~------~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      +++.....   +....      ......-+++|.| .+..|+++..
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E  140 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKE  140 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEE
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEEC
Confidence            98765332   12211      1234568999999 6666655554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.82  E-value=2.1  Score=41.56  Aligned_cols=108  Identities=10%  Similarity=0.046  Sum_probs=65.7

Q ss_pred             CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ...+.+|+|++. +.++.+-...+.|..+++......    ........ .......+++.+.++.++++-...+.|.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC----CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            456889999985 455666667788999988763100    01111222 334578888887546777777778899999


Q ss_pred             eCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      |+........+...-.....|++.|.++.++++-
T Consensus       187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence            9874433333333334578888888344444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.59  E-value=0.91  Score=42.14  Aligned_cols=102  Identities=9%  Similarity=0.094  Sum_probs=64.0

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ....|  +|++. ++++-...+.|.+|++... ..+    .....+........++++++ ++++++....+.|.+||..
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~----~~~~~~~~~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKP----GEPEIFVEQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCB----CCCEEEEESCCCSSEEEBTT-CCEEEECBTTCCEEEECTT
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCC----CccEEEeccCCCCCeEECCC-CCEEEEeCCCCeEEEECCC
Confidence            34555  77776 4556667789999998752 001    00111111134567889998 7887777778899999975


Q ss_pred             CCcc--eeecccccCcEEEEEee---cCCCCeEEEeeC
Q 048199          457 TQQS--VMEYEEHEKRAWSVDFS---RTEPSMLVSGSD  489 (495)
Q Consensus       457 ~~~~--~~~~~~h~~~v~~v~~~---~~~g~~l~s~s~  489 (495)
                       |+.  +..+.......++++|.   + ++..|+.++.
T Consensus       242 -G~~~~~~~~~~~~~~p~~~a~~g~~~-d~~~LyVt~~  277 (306)
T 2p4o_A          242 -RSTTIIAQAEQGVIGSTAVAFGQTEG-DCTAIYVVTN  277 (306)
T ss_dssp             -CCEEEEECGGGTCTTEEEEEECCSTT-TTTEEEEEEC
T ss_pred             -CCEEEEeecccccCCceEEEEecccC-CCCEEEEECC
Confidence             654  32343333568899998   7 7666655544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.54  E-value=0.69  Score=44.25  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~  464 (495)
                      ++..++.++.++.|..+|..++..        .-...  ....+......   +..|+.++.+|.|.+||..+|+.+..+
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~--------~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVT--------LWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCE--------EEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcE--------EEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            456777778899999999988721        11111  11112222222   457888999999999999999988776


Q ss_pred             ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          465 EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       465 ~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ......+.+....  .+..|+.++.||.|.
T Consensus       345 ~~~~~~~~~~~~~--~~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          345 KVDSSGFQTEPVA--ADGKLLIQAKDGTVY  372 (376)
T ss_dssp             ECCTTCBCSCCEE--ETTEEEEEBTTSCEE
T ss_pred             ecCCCcceeCCEE--ECCEEEEEeCCCEEE
Confidence            6533333322111  235677888888775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=92.54  E-value=1.8  Score=40.66  Aligned_cols=109  Identities=9%  Similarity=-0.030  Sum_probs=66.7

Q ss_pred             CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEe
Q 048199          377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd  454 (495)
                      ....++++++ .+.++++-...+.|.+++++..       ...+...........++++|.++.++++-. ..+.|..++
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-------~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            3456899997 5666677777889999998764       111111133456789999997454444432 357888888


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +. |.....+. ..-...+.|+|++.++.+.++-+..+.|
T Consensus       152 ~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          152 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             TT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence            76 44333332 2234568999998344444444444544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=92.31  E-value=0.74  Score=43.07  Aligned_cols=101  Identities=7%  Similarity=0.014  Sum_probs=61.8

Q ss_pred             CcEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCC
Q 048199          377 NIVSSIEFDR-DDQLFATAGV-----------------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK  438 (495)
Q Consensus       377 ~~V~~l~~~p-~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  438 (495)
                      ....++++++ +|++.++...                 ++.|..||..++        ............+.++|+|+ +
T Consensus       126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~p~gia~~~d-g  196 (322)
T 2fp8_A          126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK--------ETTLLLKELHVPGGAEVSAD-S  196 (322)
T ss_dssp             SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT--------EEEEEEEEESCCCEEEECTT-S
T ss_pred             cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC--------EEEEeccCCccCcceEECCC-C
Confidence            3478899999 9988776533                 356777777654        11111111123567999999 7


Q ss_pred             CEE-EEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEee
Q 048199          439 NRI-ASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       439 ~~l-~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ..| ++-..++.|.+||+....  ....+....+ ...+++.+ +|.++++..
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~  247 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSS  247 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEec
Confidence            644 455667899999987421  1122211223 67788888 887666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=92.30  E-value=0.76  Score=42.97  Aligned_cols=105  Identities=10%  Similarity=-0.034  Sum_probs=65.8

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----------C
Q 048199          379 VSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY----------E  447 (495)
Q Consensus       379 V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~----------d  447 (495)
                      ...|+|+|+++.| ++-...+.|.+|++.....  .. ......  ..+ ...+++.++ +.++++...          .
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--~~-~~~~~~--~~g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~  259 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--GT-AEVLVK--IPN-PGNIKRNAD-GHFWVSSSEELDGNMHGRVD  259 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--TC-EEEEEE--CSS-EEEEEECTT-SCEEEEEEEETTSSTTSCEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--Cc-cceEEe--CCC-CCCeEECCC-CCEEEEecCcccccccCCCc
Confidence            4578999999854 4556678999999875310  00 011111  223 788999998 776666544          4


Q ss_pred             CcEEEEeCCCCcceeeccccc----CcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          448 GIVTVWDVTTQQSVMEYEEHE----KRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~h~----~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +.|..+|.. ++.+..+....    ..+.++++.  ++.++++...++.|
T Consensus       260 ~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          260 PKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSV  306 (322)
T ss_dssp             EEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEE
T ss_pred             cEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCce
Confidence            678888864 77766665432    346677763  66666665555554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.23  E-value=1.5  Score=46.70  Aligned_cols=110  Identities=9%  Similarity=-0.012  Sum_probs=68.3

Q ss_pred             CCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEE
Q 048199          376 ANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iw  453 (495)
                      .....+|++++.+ +++++-...+.|.+.+++..       ...+...........|+++|..+.++++-..+ +.|.+.
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            3456789999865 56667777889999999864       11112123344688999999845455554333 678888


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ++. |.....+. ..-.+.+.|++.+.++.++++-.....|
T Consensus       543 ~~d-G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          543 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ecC-CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            886 44444433 2335788899987344444444444444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.14  E-value=0.62  Score=44.52  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecCC-----C
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDYE-----G  448 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~d-----g  448 (495)
                      ..-++++|.|+|+++++- .++.|.+++ ......+..  .+ ...........++|+|+   ++.++++-..+     +
T Consensus        31 ~~P~~ia~~pdG~l~V~e-~~g~I~~i~-~g~~~~~~~--~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAE-RPGRIRLFR-EGRLSTYAE--LS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTTEEEEEE-TTEEEEEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEEe-CCCeEEEEE-CCCccEeec--ce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            346799999999977664 568999998 221000000  01 11123456899999997   55555554433     5


Q ss_pred             cEEEEeCCCCc-----c-eeecc---cccCcEEEEEeecCCCCeEEEee
Q 048199          449 IVTVWDVTTQQ-----S-VMEYE---EHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       449 ~v~iwd~~~~~-----~-~~~~~---~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      .|..|+...+.     . +..+.   +.......++|.| +|.++++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            68888876431     1 11122   1112346899999 997777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=92.07  E-value=0.3  Score=45.59  Aligned_cols=101  Identities=9%  Similarity=-0.055  Sum_probs=57.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...+.++.+.+++.++ .++.++.|..||.. +.       ...........+.++.+.++ +.+++ |+  +.|..|| 
T Consensus       136 ~~~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~d~~-g~l~v-~t--~~l~~~d-  201 (330)
T 3hxj_A          136 KAIYATPIVSEDGTIY-VGSNDNYLYAINPD-GT-------EKWRFKTNDAITSAASIGKD-GTIYF-GS--DKVYAIN-  201 (330)
T ss_dssp             SCCCSCCEECTTSCEE-EECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTT-CCEEE-ES--SSEEEEC-
T ss_pred             CceeeeeEEcCCCEEE-EEcCCCEEEEECCC-CC-------EeEEEecCCCceeeeEEcCC-CEEEE-Ee--CEEEEEC-
Confidence            3445666677777654 56678899999987 41       10011112233455566555 55444 43  7788888 


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .++..+..+......+.++.+.+ +|.+. .++.++.
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~-~g~l~-v~t~~~g  236 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAISE-DGTIY-VTSLDGH  236 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEECT-TSCEE-EEETTTE
T ss_pred             CCCcEEEEEccCCcceeceEECC-CCeEE-EEcCCCe
Confidence            66766655554445566677766 55443 3444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.96  E-value=1.6  Score=46.49  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=65.9

Q ss_pred             CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ....+.+|+|++ .+.++++-...+.|+.+++......    ......+. ....+..|++.+.+++++++-...+.|.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v  497 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  497 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence            345678999998 4556667667788999988753100    01111121 33456678888775577777778889999


Q ss_pred             EeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199          453 WDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       453 wd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      .|+. |.....+. ..-.....|++.|..|.++++-
T Consensus       498 ~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          498 ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             EeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEec
Confidence            9987 44444433 2334578899988345444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=91.51  E-value=0.86  Score=44.90  Aligned_cols=106  Identities=9%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CC----cEE
Q 048199          378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EG----IVT  451 (495)
Q Consensus       378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg----~v~  451 (495)
                      ....|+|+| ++..|..+...+.|+.+|+...        ..............++|+++ +..|+.+.. ++    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--------~v~~~~~~~~~P~~ia~d~~-G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--------YVSTVYSGLSKVRTICWTHE-ADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--------EEEEEECCCSCEEEEEECTT-SSEEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--------EEEEEecCCCCcceEEEeCC-CCEEEEEeCCCCcccceEE
Confidence            457899998 3444545444488999998775        11122234456899999999 775554443 22    233


Q ss_pred             EEeCCCCcce--eecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          452 VWDVTTQQSV--MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~~~~~~--~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +++ ..+...  ..+. .......++++|.++.++++-..++.|.
T Consensus       209 ~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~  251 (430)
T 3tc9_A          209 ILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVF  251 (430)
T ss_dssp             EEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             EEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence            344 333222  2222 1234567888885566666655555553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.33  E-value=0.86  Score=44.94  Aligned_cols=111  Identities=8%  Similarity=0.052  Sum_probs=64.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCC---Cc-EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVS---RR-IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d---~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      .....+|+|+++|+++++....   .. +..++.....       ..............++++|+++.++++-..++.|.
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~  253 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF-------TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS  253 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT-------CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe-------eccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence            4568899999999966555422   12 2223322220       00011112344577899995477777777788999


Q ss_pred             EEeCCCCcceeeccc--ccCcEEEEEeecCCCC-eEEEeeCCCcEe
Q 048199          452 VWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPS-MLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~-~l~s~s~D~~v~  494 (495)
                      .+|..++.....+..  ....-..++|+| ++. ++++-...+.|+
T Consensus       254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          254 SYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             EECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             EEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEE
Confidence            999887765222221  122335699999 887 445554555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=91.31  E-value=3.4  Score=37.31  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee------cCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE------MPTRSKLSCLSWNKFSKNRIASSDYEG  448 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~p~~~~~l~sg~~dg  448 (495)
                      .+....+|+|+|.++.|.++.......||.++..... .  ...+..      ...-..+.+++++|..+.+++.+....
T Consensus       119 ~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~  195 (255)
T 3qqz_A          119 TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-N--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR  195 (255)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-S--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-C--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC
Confidence            4566899999998877777766666677777621000 0  001110      012335789999999788888888888


Q ss_pred             cEEEEeCCCCcceeec--c-cc------cCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          449 IVTVWDVTTQQSVMEY--E-EH------EKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       449 ~v~iwd~~~~~~~~~~--~-~h------~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      .|.++|.. |..+..+  . +.      -..--.|+|.+ +|++.++ |.-..
T Consensus       196 ~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~  245 (255)
T 3qqz_A          196 ALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNR  245 (255)
T ss_dssp             EEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTE
T ss_pred             eEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCce
Confidence            99999965 5544433  2 11      12457899999 8886666 44333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.17  E-value=0.31  Score=47.43  Aligned_cols=28  Identities=18%  Similarity=0.133  Sum_probs=13.3

Q ss_pred             CCCCC-CCCcCccCCCcchHHHHHHHHHHhH
Q 048199           87 SDCPC-CGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        87 ~~CP~-Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      .+||. ||-.-.+  +..+..+.+.|++++.
T Consensus        43 vkCPSGCrLQglL--dkqErDltkrINELKn   71 (562)
T 3ghg_A           43 YKCPSGCRMKGLI--DEVNQDFTNRINKLKN   71 (562)
T ss_dssp             TEEECHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCcccchhhhH--HhhcCcHHHHHHHHHH
Confidence            36775 5433222  2234555555555544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.98  E-value=1  Score=44.64  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC------
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY------  446 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~------  446 (495)
                      ..-++|+|.|+|+++++-...+.|++++...+... +...............+..++|+|+   ++.++++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999998887655557888876543110 0000000000113457889999995   4655555432      


Q ss_pred             ------CCcEEEEeCCCC-------ccee-ecc-cccCcEEEEEeecCCCCeEEEeeC
Q 048199          447 ------EGIVTVWDVTTQ-------QSVM-EYE-EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       447 ------dg~v~iwd~~~~-------~~~~-~~~-~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                            ...|.-|+...+       +.+. .+. +..+....|+|.| ||.++++.++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence                  234555554321       1111 121 1123578899999 9988777654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.69  E-value=1.2  Score=43.88  Aligned_cols=109  Identities=13%  Similarity=0.017  Sum_probs=66.5

Q ss_pred             EEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCC
Q 048199          379 VSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVT  456 (495)
Q Consensus       379 V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~  456 (495)
                      ...++++| ++.++++-..++.|+.+|..++..     ...+...........++|+|+ +. ++++-..++.|..+|..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-----~~~~~~~~~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-----TEEEVMMDTKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-----EEEEEECSCCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-----EEEEeccCCCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCC
Confidence            45788999 777777777788899999875510     011112222233457999999 66 55666667899998865


Q ss_pred             --CCcc--eeecccc---------------cCcEEEEEe---------ecCCCCeEEEeeCCCcEe
Q 048199          457 --TQQS--VMEYEEH---------------EKRAWSVDF---------SRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       457 --~~~~--~~~~~~h---------------~~~v~~v~~---------~~~~g~~l~s~s~D~~v~  494 (495)
                        ++..  ...+.+.               -.....++|         .. +|.++++-...++|+
T Consensus       304 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          304 RETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVR  368 (433)
T ss_dssp             TTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEE
T ss_pred             CCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEE
Confidence              2321  1122111               123567888         55 676777766666664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=90.65  E-value=1.1  Score=47.29  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +|.|..||+.+|+.+-.+..+. +++...+.. .+.+++.|+.|+.|+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~  499 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVI  499 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEE
Confidence            4789999999999888776543 334445565 677899999999886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=90.40  E-value=2.1  Score=40.21  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=69.2

Q ss_pred             EEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCC-----C--CCeEEEEE---cCCCCCEEEEec--
Q 048199          379 VSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPT-----R--SKLSCLSW---NKFSKNRIASSD--  445 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----~--~~i~~~~~---~p~~~~~l~sg~--  445 (495)
                      --++.|++....|..++ ..++|..||...+.       .....+..     .  ..+..+.|   .|+ +.++++..  
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~   86 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-------HFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA   86 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCC-------EEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-------EEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence            34788998555555554 79999999987540       11111211     1  13689999   688 77777543  


Q ss_pred             -----------CCCcEEEEeCC---CCcceeecc--ccc-----------CcEEEEEeecCCCCeEEEeeCC-CcE
Q 048199          446 -----------YEGIVTVWDVT---TQQSVMEYE--EHE-----------KRAWSVDFSRTEPSMLVSGSDD-CKV  493 (495)
Q Consensus       446 -----------~dg~v~iwd~~---~~~~~~~~~--~h~-----------~~v~~v~~~~~~g~~l~s~s~D-~~v  493 (495)
                                 .+..|..||+.   +++.+....  +..           .....++..+ +|+..++++.- +.|
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAI  161 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeE
Confidence                       26789999998   776654332  211           2478899999 99988888765 544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=89.59  E-value=1.1  Score=41.67  Aligned_cols=104  Identities=9%  Similarity=0.071  Sum_probs=63.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...+.++.+++++.+.+ ++.++.+..+|....         ..... .....+.++.+.++ + .|+.|+.+|.|..+|
T Consensus       214 ~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~-g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          214 YWTVTRPAISEDGTIYV-TSLDGHLYAINPDGT---------EKWRFKTGKRIESSPVIGNT-D-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             SCCCSCCEECTTSCEEE-EETTTEEEEECTTSC---------EEEEEECSSCCCSCCEECTT-S-CEEEECTTCEEEEEC
T ss_pred             CcceeceEECCCCeEEE-EcCCCeEEEECCCCC---------EeEEeeCCCCccccceEcCC-C-eEEEecCCCCEEEEC
Confidence            35577788887776554 555777877774332         11111 11122233445544 4 566777888999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      . ++..+..+......+.++...+ +|. |..|+.+|.++
T Consensus       282 ~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~  318 (330)
T 3hxj_A          282 P-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFY  318 (330)
T ss_dssp             T-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEE
T ss_pred             C-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEE
Confidence            5 6777666654455667777766 665 55677888775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=89.43  E-value=2.9  Score=41.76  Aligned_cols=113  Identities=10%  Similarity=0.030  Sum_probs=67.0

Q ss_pred             CcEEEEEE-------ccCCCEEEEEeCCC-------cEEEEEccccccCCCC-c-CCCeeecCCCCCeEEEEEcCCCCCE
Q 048199          377 NIVSSIEF-------DRDDQLFATAGVSR-------RIKVFDFASVVNEPAD-V-HCPVVEMPTRSKLSCLSWNKFSKNR  440 (495)
Q Consensus       377 ~~V~~l~~-------~p~~~~l~s~s~d~-------~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~p~~~~~  440 (495)
                      .....|+|       ++++..|+.+....       .|.+++.... ..+.. . ...+..+   ...+.++++|+++.+
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-G~~~~~~~~~~v~~~---~~p~giavdp~~g~L  261 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-GTFDDRSDIQLIAAY---KQCNGATIHPINGEL  261 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-SCCSTTSCEEEEEEE---SCCCCEEECTTTCCE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-CceeecccceeeccC---CCceEEEEcCCCCeE
Confidence            35899999       99998555554432       2555553331 01110 0 0111122   234678899975777


Q ss_pred             EEEecCCCcEEEEeCC-------CCcc-----------eeecc--cccCcEEEEEeecCCCCe-EEEeeCCCcEe
Q 048199          441 IASSDYEGIVTVWDVT-------TQQS-----------VMEYE--EHEKRAWSVDFSRTEPSM-LVSGSDDCKVL  494 (495)
Q Consensus       441 l~sg~~dg~v~iwd~~-------~~~~-----------~~~~~--~h~~~v~~v~~~~~~g~~-l~s~s~D~~v~  494 (495)
                      +++-..++.|..+|+.       ++..           ...+.  +...+.+.|+|+| +|.+ +++-+....|+
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~  335 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFM  335 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEE
Confidence            8888888899999987       5543           11211  1234568999999 8884 55555555554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.34  E-value=1.9  Score=41.07  Aligned_cols=108  Identities=9%  Similarity=0.037  Sum_probs=60.5

Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC------
Q 048199          378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY------  446 (495)
Q Consensus       378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~------  446 (495)
                      .-+.|+|.|+|+ ++++- ..+.|++++....... +..  .+.........+..++|+|+   ++.++++-..      
T Consensus        19 ~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~--~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSG--VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBS--CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecC--CcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            467999999999 66554 5789999985432111 111  11111123456889999995   4655555332      


Q ss_pred             -CCcEEEEeCCCC--c--ce----eecc---cccCcEEEEEeecCCCCeEEEeeC
Q 048199          447 -EGIVTVWDVTTQ--Q--SV----MEYE---EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       447 -dg~v~iwd~~~~--~--~~----~~~~---~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       ...|..|+...+  .  ..    ..+.   ........+.|.| ||.++++.++
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd  149 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECC
Confidence             235666665432  1  11    1111   1112245799999 9876666543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=89.20  E-value=7.6  Score=36.20  Aligned_cols=108  Identities=6%  Similarity=-0.005  Sum_probs=62.6

Q ss_pred             CCcEEEEEEccCCC-EEEEE-eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDDQ-LFATA-GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~~-~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .....+|+++|.+. ++.+- +....|..++++..       .........-...+.++|+++++.++++-...+.|..+
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-------CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            34568999998644 44444 23577887777653       11111112234578999999856666666677889999


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      |+. |.....+. +......++++..  +.++.+....+.|
T Consensus       194 d~d-G~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V  231 (318)
T 3sov_A          194 NLD-GTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSI  231 (318)
T ss_dssp             ETT-SCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEE
T ss_pred             cCC-CCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeE
Confidence            986 33333332 2334456666643  3444454444444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.16  E-value=0.55  Score=48.22  Aligned_cols=47  Identities=6%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEeecCCCCeEE
Q 048199          438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDFSRTEPSMLV  485 (495)
Q Consensus       438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~g~~l~  485 (495)
                      +..++.++.||.|..||.++|+.+..+...... -.-+.|.. +|..++
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~-~G~~yv  522 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF-KGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE-CCEEEE
Confidence            557777999999999999999998887643211 11233445 665443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.02  E-value=1.2  Score=42.43  Aligned_cols=107  Identities=12%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC---C---
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY---E---  447 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~---d---  447 (495)
                      ..-++|+|.|+|+++++- .++.|+++|. .+...+..  .+ ...........++|+|+   ++.++++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~--~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVAS--FD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeec--cc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            457899999999866664 5689998873 33100000  00 01123356899999997   5655555432   3   


Q ss_pred             -CcEEEEeCCCC--c-----ce-eeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199          448 -GIVTVWDVTTQ--Q-----SV-MEYEE-HEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       448 -g~v~iwd~~~~--~-----~~-~~~~~-h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       ..|..|+....  .     .+ ..+.. .......++|.| +|.++++.+.
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~  154 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGD  154 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECC
Confidence             56777776543  1     11 11221 112346799999 9987777543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=88.55  E-value=6.8  Score=40.55  Aligned_cols=103  Identities=11%  Similarity=0.019  Sum_probs=65.5

Q ss_pred             CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ...+.+|+|++. +.++.+-..++.|..++++..        ....... ....+..+++++.+++++++-...+.|.+.
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~--------~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~  107 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS--------ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS  107 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC--------CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEE
Confidence            345789999985 455666667889999988764        1111111 123466788877656677777778899999


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      |.... ....+. ..-.....|++.|.+|.+++|-
T Consensus       108 ~~dG~-~~~~l~~~~l~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A          108 KLDGQ-HRQVLVWKDLDSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             ETTST-TCEEEECSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCC-cEEEEEeCCCCCcccEEEccCCCeEEEeC
Confidence            98643 333332 3334568899998455544443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=88.46  E-value=0.59  Score=49.33  Aligned_cols=108  Identities=9%  Similarity=-0.008  Sum_probs=63.9

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199          378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD  454 (495)
Q Consensus       378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd  454 (495)
                      ....|++++ .++++++-...+.|.++++...        .....+ ........++++|.++.++++-... +.|.+++
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCC--------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence            356788885 5566666667889999998764        111111 1223467889999745555554333 7888888


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      +. |.....+. ..-...+.|+|++.++.++++-+..+.|.
T Consensus       526 ~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          526 LN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             SS-SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             CC-CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            75 33332222 22345678999983455555555555553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.42  E-value=10  Score=35.35  Aligned_cols=108  Identities=7%  Similarity=0.086  Sum_probs=62.0

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      +...+.++.+.|++.+++.+.....++-+|-...  .    -.+ ........+..+.+.++ +.+++.+ .+|.+.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~--t----W~~-~~~~~~~~~~~~~~~~~-g~~~~~~-~~G~~~~s~  231 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT--A----WEP-HNRTTSRRLHNMGFTPD-GRLWMIV-NGGKIAFSD  231 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCS--S----CEE-EECCSSSCEEEEEECTT-SCEEEEE-TTTEEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCC--c----eeE-CCCCCCCccceeEECCC-CCEEEEe-CCceEEEec
Confidence            3457889999998888876654433333332111  0    011 12233456889999888 6655544 578888775


Q ss_pred             CCCCcceeecc----cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ...|..-..+.    .+...+..+.|.+ ++.+++.+. ++.|
T Consensus       232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          232 PDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL  272 (327)
T ss_dssp             TTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE
T ss_pred             CCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE
Confidence            33233222221    1233588899987 777666654 5544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=87.85  E-value=0.61  Score=48.00  Aligned_cols=45  Identities=7%  Similarity=0.202  Sum_probs=32.5

Q ss_pred             CCEEEEecCCCcEEEEeCCCCcceeecccccCcE-EEEEeecCCCCe
Q 048199          438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA-WSVDFSRTEPSM  483 (495)
Q Consensus       438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~g~~  483 (495)
                      +.+++.|+.||.++.||.++|+.+-.+......+ .-+.|.. +|..
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~-~G~q  542 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ-DGEQ  542 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEE
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE-CCEE
Confidence            5678889999999999999999998887543221 1245555 6653

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=87.80  E-value=0.55  Score=33.93  Aligned_cols=42  Identities=19%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             cccccccchhhh--ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           53 MLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        53 l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ..|..|...+.-  |....||.+||..=  ++. ..-.|+.--+...
T Consensus        26 ~rC~~C~kkvgl~~~f~CrCg~~FC~~H--Ry~-e~H~C~fDyK~~g   69 (85)
T 1wff_A           26 KHCFLCGKKTGLATSFECRCGNNFCASH--RYA-EAHGCNYDYKSAG   69 (85)
T ss_dssp             CBCSSSCCBCSSSSCEECTTCCEECTTT--CST-GGGTCCSCCSSSC
T ss_pred             ccchhhCCeecccCCeEcCCCCEecccC--CCc-cCCCCcchhhHHH
Confidence            469999986654  88889999999852  222 2235776544333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.13  E-value=5.4  Score=37.79  Aligned_cols=112  Identities=9%  Similarity=-0.004  Sum_probs=64.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEE--ecCCCcE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIAS--SDYEGIV  450 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~s--g~~dg~v  450 (495)
                      -..-+.|+|.|+|.+|++--..+.|++++...+...... ..+............++|+|+   ++.++++  ...++.|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~-~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG-EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec-ccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            455789999999998888766899999986544110000 000011224557899999995   3444333  2234456


Q ss_pred             EEEeCCCCc--------c---eeecc-cccCcEEEEEeecCCCCeEEEeeC
Q 048199          451 TVWDVTTQQ--------S---VMEYE-EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       451 ~iwd~~~~~--------~---~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .-|....+.        .   +..+. +..+....|.|.| ||.++++.++
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd  159 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGE  159 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECC
Confidence            666554311        1   11121 1122345799999 9988887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=87.09  E-value=3.6  Score=42.80  Aligned_cols=99  Identities=6%  Similarity=0.025  Sum_probs=60.0

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------cEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecC
Q 048199          381 SIEFDR-DDQLFATAGVSR-----------RIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDY  446 (495)
Q Consensus       381 ~l~~~p-~~~~l~s~s~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~  446 (495)
                      ..++.| ++++++.||.+.           .+.+||..++.     . ..+..+  .+.....++++..+ +.+++.|+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w-~~~~~~~~~~~~~~~~~~~~~~-g~lyv~GG~  262 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----V-SDRTVTVTKHDMFCPGISMDGN-GQIVVTGGN  262 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----B-CCCEEEECSCCCSSCEEEECTT-SCEEEECSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----E-EeCcccCCCCCCccccccCCCC-CCEEEeCCC
Confidence            556777 888888887653           57889988751     1 111111  22223345677777 778888874


Q ss_pred             -CCcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199          447 -EGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       447 -dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                       +..+.+||..+..-  +..+.... .-.++++.+ ++.+++.|+
T Consensus       263 ~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG  305 (656)
T 1k3i_A          263 DAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS-DGRVFTIGG  305 (656)
T ss_dssp             STTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT-TSCEEEECC
T ss_pred             CCCceEEecCcCCceeECCCCCccc-cccceEEec-CCeEEEEeC
Confidence             45899999876532  22222111 123445556 888999988

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=87.07  E-value=0.78  Score=48.39  Aligned_cols=107  Identities=10%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ..+.+|+|++.+. ++++-...+.|+.+++......    ......+ .....+..+++.+.++.++++-...+.|.++|
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            4466889998655 4555556788999998752000    0011111 11123456788765466667766778999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      .........+.........|++.|.++.++++.
T Consensus       482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             SSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred             cCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence            874432222222223456788887344444443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=86.98  E-value=3.9  Score=28.44  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048199          182 VDELKEIQTDLHYIKEDINAVERHRIDLYRARDRY  216 (495)
Q Consensus       182 ~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~~~  216 (495)
                      .+++.+.+..++.++..+.+.+..+.+|+..+++.
T Consensus        32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           32 IEELRQRDALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444446666666777777777777666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=86.96  E-value=4.6  Score=38.33  Aligned_cols=92  Identities=12%  Similarity=0.056  Sum_probs=55.9

Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      +..++.++.++.+..+|..++        ...-... ......+...   +..++.++.++.|..||..+|+.+......
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG--------~~~w~~~-~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~  306 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSG--------QIMWKRE-LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL  306 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTC--------CEEEEEC-CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred             CCEEEEEecCcEEEEEECCCC--------cEEeecc-CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence            456677778999999999887        1111111 1234444444   557888888999999999999876655421


Q ss_pred             -cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          468 -EKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       468 -~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       ...+......   +..|+.++.+|.|.
T Consensus       307 ~~~~~~~~~~~---~~~l~v~~~~g~l~  331 (376)
T 3q7m_A          307 LHRLLTSPVLY---NGNLVVGDSEGYLH  331 (376)
T ss_dssp             TTSCCCCCEEE---TTEEEEECTTSEEE
T ss_pred             CCCcccCCEEE---CCEEEEEeCCCeEE
Confidence             1122222222   24566666666553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=86.79  E-value=11  Score=40.13  Aligned_cols=108  Identities=7%  Similarity=0.017  Sum_probs=67.1

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc-CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...|.++..++++++|..|..++-|.+||..++.. .+.. ..+   ......|.++...++ +.+++.. . +-|.+||
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~---~l~~~~v~~i~~d~~-g~lwigt-~-~Gl~~~~  477 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNS---QLVNENVYAILPDGE-GNLWLGT-L-SALVRFN  477 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT-TTS---CCSCSCEEEEEECSS-SCEEEEE-S-SCEEEEE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec-CCC---CcCCCeeEEEEECCC-CCEEEEe-c-CceeEEe
Confidence            35799999998888455667777799999876510 0000 000   012356899998887 6655544 3 4588899


Q ss_pred             CCCCcceeeccc------ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          455 VTTQQSVMEYEE------HEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       455 ~~~~~~~~~~~~------h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      ..++........      ....|.++...+ +|.+.+.+. +|.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~-~Gl  519 (795)
T 4a2l_A          478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE-EGL  519 (795)
T ss_dssp             TTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES-SCE
T ss_pred             CCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC-Cce
Confidence            877643322111      235788888887 777666554 553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=86.77  E-value=5.7  Score=37.76  Aligned_cols=103  Identities=8%  Similarity=-0.043  Sum_probs=62.1

Q ss_pred             CcEEEEEEccCCCEEEEEeC---C------------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-
Q 048199          377 NIVSSIEFDRDDQLFATAGV---S------------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR-  440 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~---d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-  440 (495)
                      ....++.+.++|.+.++...   |            ..=+||.++.+        ........-...+.++|+|| +.. 
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--------~~~~~~~~l~~pNGia~spD-g~~l  235 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--------DVRVVAEGFDFANGINISPD-GKYV  235 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--------CCEEEEEEESSEEEEEECTT-SSEE
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--------eEEEeecCCcccCcceECCC-CCEE
Confidence            45789999999998877652   1            22344444332        11111122245789999999 654 


Q ss_pred             EEEecCCCcEEEEeCCC-Ccc--eeecccccCcEEEEEeecCC-CCeEEEeeCC
Q 048199          441 IASSDYEGIVTVWDVTT-QQS--VMEYEEHEKRAWSVDFSRTE-PSMLVSGSDD  490 (495)
Q Consensus       441 l~sg~~dg~v~iwd~~~-~~~--~~~~~~h~~~v~~v~~~~~~-g~~l~s~s~D  490 (495)
                      +++-+..+.|..||+.. +..  ...+ ...+....+++.+ + |.+.+++..+
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~-e~G~lwva~~~~  287 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDP-VTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECT-TTCCEEEEEESC
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeC-CCCcEEEEecCC
Confidence            45555678999999863 321  2233 2245567778876 4 7777766544

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=86.57  E-value=0.25  Score=37.33  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             hccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           64 EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        64 ~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .|....||++|+     .-+.....||.|+..-.
T Consensus        67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I   95 (105)
T 2gmg_A           67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred             CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence            456778999992     23344579999997643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=86.37  E-value=10  Score=40.25  Aligned_cols=111  Identities=10%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc-cCCCCcCCCee-e-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV-NEPADVHCPVV-E-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~-~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ...|.++..+++|++.+ |..++-|..||..++. ..+..  .... . ......|.++...++ +.+|..|+.++-|.+
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~--~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~  431 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTL--QEDESARGIGSNNIKAVYVDEK-KSLVYIGTHAGGLSI  431 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECC--C------CCSCSCEEEEEEETT-TTEEEEEETTTEEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEec--CCCCcccCCCCccEEEEEEcCC-CCEEEEEeCcCceeE
Confidence            45699999998887664 5667678999887641 00000  0000 0 012356889988877 764666777778999


Q ss_pred             EeCCCCcceeecc----cccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199          453 WDVTTQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSDDCK  492 (495)
Q Consensus       453 wd~~~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~D~~  492 (495)
                      ||..++....-..    -+...|+++...+ +|.+.+... +|.
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-~Gl  473 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-SAL  473 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-SCE
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-Cce
Confidence            9988765332211    1245788888877 776555443 553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=86.29  E-value=0.82  Score=47.96  Aligned_cols=62  Identities=10%  Similarity=0.152  Sum_probs=40.1

Q ss_pred             CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      ++.|..||+.++..        +-........+...+... +.+++.|+.||.|++||.++|+.+..+...
T Consensus       437 ~g~l~A~D~~tG~~--------~W~~~~~~~~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKA--------AWKVPYPTHWNGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEE--------EEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcE--------EEEccCCCCCcCceeEeC-CCEEEEECCcccchhhhhhcChhheEecCC
Confidence            47788888887611        111111112222223334 678888999999999999999998888654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=86.13  E-value=2.8  Score=40.75  Aligned_cols=78  Identities=13%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             CCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEec--C
Q 048199          375 SANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSD--Y  446 (495)
Q Consensus       375 h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~--~  446 (495)
                      ....|..+.|||   .+..|++-..|++||+||+................+   .....|.+++|.++ +..|+..+  .
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~-~lTLYvl~~t~  201 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD-GLTLYCLNTTE  201 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT-SSCEEEEECTT
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC-CcEEEEEecCC
Confidence            367899999999   456788888899999999987421111111111111   12256889999997 77777744  7


Q ss_pred             CCcEEEE
Q 048199          447 EGIVTVW  453 (495)
Q Consensus       447 dg~v~iw  453 (495)
                      +|-|.-.
T Consensus       202 ~GDIYAl  208 (452)
T 3pbp_A          202 GGDIFAF  208 (452)
T ss_dssp             SCEEEEE
T ss_pred             CCCEEEE
Confidence            7877543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=86.01  E-value=10  Score=39.09  Aligned_cols=103  Identities=10%  Similarity=0.007  Sum_probs=65.6

Q ss_pred             CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ..+.+|+|++. +.++++-...+.|..++.+..       .........-..+..+++...+++++++-...+.|.+.+.
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-------~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~  421 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-------GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL  421 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-------ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence            45789999984 556666666888999988764       1111111222356678887654667777777889999998


Q ss_pred             CCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199          456 TTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG  487 (495)
Q Consensus       456 ~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~  487 (495)
                      .. .....+. ..-...++|++.|.+|.+++|-
T Consensus       422 ~G-~~~~~l~~~~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          422 NG-TMRKILISEDLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             TS-CSCEEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred             CC-CeEEEEEECCCCCeeeEEEEcCCCcEEEec
Confidence            74 3333333 2334678899988445555553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.28  E-value=9.8  Score=39.26  Aligned_cols=109  Identities=9%  Similarity=-0.046  Sum_probs=66.3

Q ss_pred             CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEEe
Q 048199          377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd  454 (495)
                      ....+|++++. ++++++-...+.|.+.+++..       ...+...........++++|..+.++++-.. .+.|...+
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~  156 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  156 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-------CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence            56889999984 556667777899999999865       1111211333457789999984544444322 45677777


Q ss_pred             CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      +. |.....+. ..-...+.|++.+.++.++++-+..+.|
T Consensus       157 ~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          157 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             TT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             CC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            65 44433332 2345678899998334444444444444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=85.15  E-value=11  Score=38.85  Aligned_cols=108  Identities=11%  Similarity=0.010  Sum_probs=66.4

Q ss_pred             CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEe
Q 048199          377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd  454 (495)
                      ....+|++++. ++++++-...+.|.+.+++..       ...+...........++++|..+.++++-. ..+.|...+
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~-------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~  152 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ-------HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA  152 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTST-------TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCC-------cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence            34678999875 556667777889999998764       111111133456799999997455444432 256788888


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcE
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKV  493 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v  493 (495)
                      +. |.....+...-...+.|++.+ ++..| ++-+..+.|
T Consensus       153 ~d-G~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          153 MD-GSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLI  190 (628)
T ss_dssp             TT-SCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEE
T ss_pred             CC-CCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCEE
Confidence            76 444444433445678899988 54444 443344444

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=85.08  E-value=5.5  Score=28.55  Aligned_cols=40  Identities=18%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199          172 DFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYR  211 (495)
Q Consensus       172 ~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~  211 (495)
                      +.|..+++.+.+++..-..+|+.+++.|...+..+.+|..
T Consensus        40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444555566666666667777777777777777777664

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=84.90  E-value=11  Score=28.65  Aligned_cols=50  Identities=12%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199          165 RNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD  214 (495)
Q Consensus       165 ~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~  214 (495)
                      .....|+.-|++...+....+++++.+|..|+.+++....+++.|++...
T Consensus        53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           53 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            34456666666666666666777777777777777777777777765543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.51  E-value=10  Score=37.54  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=60.6

Q ss_pred             cEEEEEEccCCC--EEEEEeCCCcEEEEEcccccc--CCCCcCCCeee---cCCCCCeEEEEEcCC---CCCEEEEecC-
Q 048199          378 IVSSIEFDRDDQ--LFATAGVSRRIKVFDFASVVN--EPADVHCPVVE---MPTRSKLSCLSWNKF---SKNRIASSDY-  446 (495)
Q Consensus       378 ~V~~l~~~p~~~--~l~s~s~d~~i~vwd~~~~~~--~~~~~~~~~~~---~~~~~~i~~~~~~p~---~~~~l~sg~~-  446 (495)
                      .-+.|+|.|++.  +|+ +...+.|++++......  .+......+..   ......+..|+|+|+   ++.++++-+. 
T Consensus        15 ~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            467999999986  554 45689999997543210  11111111110   012457889999996   3334443221 


Q ss_pred             -C----------CcEEEEeCCCC----------cceeecc--cccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          447 -E----------GIVTVWDVTTQ----------QSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       447 -d----------g~v~iwd~~~~----------~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                       +          ..|.-|.+..+          +.+..+.  ........|.|.| ||.+.++.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence             1          13444554321          1122221  1123467899999 998887776543

>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1

Probab=83.09  E-value=0.28  Score=45.66  Aligned_cols=46  Identities=20%  Similarity=0.478  Sum_probs=36.5

Q ss_pred             CCccccccccchhhhcccc----CCC--CccchhhHHhhhcCCCCCCCCCCc
Q 048199           50 DKDMLCPICMQIIKEAFLT----ACG--HSFCYMCIITHLRNKSDCPCCGHY   95 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l----~CG--H~FC~~Ci~~~~~~~~~CP~Cr~~   95 (495)
                      ...-.||||+....--++.    .=|  |.+|..|-..|--....||.|+..
T Consensus       180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~  231 (309)
T 2fiy_A          180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES  231 (309)
T ss_dssp             TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred             ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence            4457899999998766554    245  678999999998777899999986

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=83.07  E-value=0.23  Score=35.60  Aligned_cols=41  Identities=22%  Similarity=0.585  Sum_probs=28.7

Q ss_pred             cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.||.|...+.-    .=++.+|..|-..+.... .||.|++++..
T Consensus         3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~   43 (81)
T 2jrp_A            3 ITCPVCHHALER----NGDTAHCETCAKDFSLQA-LCPDCRQPLQV   43 (81)
T ss_dssp             CCCSSSCSCCEE----CSSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred             CCCCCCCCcccc----CCCceECccccccCCCcc-cCcchhhHHHH
Confidence            679999877652    123555888877765555 89999988754

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=82.75  E-value=5.1  Score=24.34  Aligned_cols=33  Identities=6%  Similarity=0.374  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199          180 QKVDELKEIQTDLHYIKEDINAVERHRIDLYRA  212 (495)
Q Consensus       180 ~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~  212 (495)
                      ++.+.++.+.+++..-+++|.+++.++.+|++.
T Consensus         6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~   38 (42)
T 2l5g_B            6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666777777777777777777777777654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=82.53  E-value=0.42  Score=33.68  Aligned_cols=18  Identities=28%  Similarity=0.634  Sum_probs=14.4

Q ss_pred             CCCCCCCCcCccCCCcch
Q 048199           87 SDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        87 ~~CP~Cr~~~~~~~l~~n  104 (495)
                      .+||.|++.+--+.|+.+
T Consensus        52 FkCP~CgEEFyG~~Lp~~   69 (95)
T 2k5c_A           52 FKCPVCGEEFYGKTLPRR   69 (95)
T ss_dssp             EECTTTCCEEETTSSCTT
T ss_pred             hcCCCccHHHhcccCChH
Confidence            589999999877777654

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=82.52  E-value=1.9  Score=31.83  Aligned_cols=47  Identities=21%  Similarity=0.573  Sum_probs=29.8

Q ss_pred             CCCCccccccccchhhhccccC-----CC-CccchhhHHhhhc--CCCCCCCCCCcC
Q 048199           48 ELDKDMLCPICMQIIKEAFLTA-----CG-HSFCYMCIITHLR--NKSDCPCCGHYL   96 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~-----CG-H~FC~~Ci~~~~~--~~~~CP~Cr~~~   96 (495)
                      +..+...| ||....... ++.     |. .-|+..|+.--..  ....||.|+...
T Consensus        32 d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           32 DPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred             CCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence            33567889 999976543 443     54 4688888862111  224799998654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.52  E-value=10  Score=37.81  Aligned_cols=76  Identities=5%  Similarity=-0.059  Sum_probs=47.9

Q ss_pred             EEEEEEcc-CCCEEEEEeCCCcEEEEEcc-------cccc------CCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEE
Q 048199          379 VSSIEFDR-DDQLFATAGVSRRIKVFDFA-------SVVN------EPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IAS  443 (495)
Q Consensus       379 V~~l~~~p-~~~~l~s~s~d~~i~vwd~~-------~~~~------~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~s  443 (495)
                      ...++++| ++.++++-..++.|..||+.       ++..      ........+.........+.++|+|+ +.+ +++
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-G~~lYva  327 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-GKYAYFG  327 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT-SSEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC-CCEEEEE
Confidence            34778899 56677777788889999998       4411      00000011223333455789999999 774 555


Q ss_pred             ecCCCcEEEEeC
Q 048199          444 SDYEGIVTVWDV  455 (495)
Q Consensus       444 g~~dg~v~iwd~  455 (495)
                      -..+..|+.+|.
T Consensus       328 D~~~h~I~kid~  339 (496)
T 3kya_A          328 VINNHYFMRSDY  339 (496)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             eCCCCEEEEEec
Confidence            566778998664

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=82.02  E-value=0.18  Score=37.16  Aligned_cols=41  Identities=29%  Similarity=0.616  Sum_probs=30.0

Q ss_pred             cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      +.||+|...+.-    .=|+.+|..|-..+. ....||.|.+++..
T Consensus        33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~-~~a~CPdC~q~Lev   73 (101)
T 2jne_A           33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE-MKALCPDCHQPLQV   73 (101)
T ss_dssp             CBCSSSCSBEEE----ETTEEEETTTCCEEE-EEEECTTTCSBCEE
T ss_pred             ccCccCCCccee----cCCEEECccccchhh-ccccCcchhhHHHH
Confidence            789999987652    135556999977643 34679999999864

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.54  E-value=0.2  Score=29.44  Aligned_cols=16  Identities=31%  Similarity=0.796  Sum_probs=10.5

Q ss_pred             Cccccccccchhhhcc
Q 048199           51 KDMLCPICMQIIKEAF   66 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv   66 (495)
                      +.+.||||+..+..|-
T Consensus         4 EGFiCP~C~~~l~s~~   19 (34)
T 3mjh_B            4 EGFICPQCMKSLGSAD   19 (34)
T ss_dssp             EEEECTTTCCEESSHH
T ss_pred             cccCCcHHHHHcCCHH
Confidence            3467777777776653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=81.25  E-value=2.8  Score=42.86  Aligned_cols=47  Identities=17%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      .+|.|..||..+|+.+-.+.. ...+.+..+.. .+.+++.++.|+.|+
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t-~gg~v~~g~~dg~l~  488 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYT-KGGLVWYATLDGYLK  488 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEE
T ss_pred             CCCeEEEEECCCCCEEEEecC-CCCccceeEEE-CCCEEEEEcCCCeEE
Confidence            357899999999988776653 22333333333 456677788888775

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=80.72  E-value=24  Score=32.66  Aligned_cols=105  Identities=10%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      +.+..|.+.+++..++.+. ++.|.. ..+.+ ..     -..........+..+.+.++ +.+++.+...+.++-+|-.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG-~t-----W~~~~~~~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~g  192 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSG-KN-----WQALVQEAIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPG  192 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCEEE-ESSTT-SS-----EEEEECSCCCCEEEEEECTT-SCEEEEETTSSEEEEECTT
T ss_pred             CCeEEEEEECCCCEEEEeC-CccEEE-EcCCC-CC-----CEEeecCCCcceEEEEEcCC-CcEEEEECCCcEEEEeCCC
Confidence            4577888877777666654 554321 12222 00     11112233456889999998 7788777654445555531


Q ss_pred             CCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          457 TQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       457 ~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       +..-..+ ......+..+.+.+ ++.+++.+ .+|.+
T Consensus       193 -G~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~G~~  227 (327)
T 2xbg_A          193 -QTAWEPHNRTTSRRLHNMGFTP-DGRLWMIV-NGGKI  227 (327)
T ss_dssp             -CSSCEEEECCSSSCEEEEEECT-TSCEEEEE-TTTEE
T ss_pred             -CCceeECCCCCCCccceeEECC-CCCEEEEe-CCceE
Confidence             2211111 12345678888888 77655443 44544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=80.16  E-value=17  Score=38.40  Aligned_cols=108  Identities=13%  Similarity=0.046  Sum_probs=65.7

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...|.++..++++.+.+ |..++-+..||..++.-.  .....   ......|.++...++ +.+++ |+. +-|.+||.
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~--~~~~~---~~~~~~v~~i~~d~~-g~lwi-gt~-~Gl~~~~~  476 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ--IIELE---KNELLDVRVFYEDKN-KKIWI-GTH-AGVFVIDL  476 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE--ECCST---TTCCCCEEEEEECTT-SEEEE-EET-TEEEEEES
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE--EeccC---CCCCCeEEEEEECCC-CCEEE-EEC-CceEEEeC
Confidence            46799999988887765 555667888887664100  00000   113456889988877 55444 444 56889998


Q ss_pred             CCCcceeecccc-----cCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          456 TTQQSVMEYEEH-----EKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       456 ~~~~~~~~~~~h-----~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .++.........     ...|.++...+ +|.+.+....+|..
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGGGVG  518 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESSSCEE
T ss_pred             CCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcCCCEE
Confidence            766543222111     35788888887 77766555445543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-15
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-13
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-10
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	8e-10
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	9e-10
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	3e-09
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	9e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	0.002
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	0.003

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 3e-15
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL---RNKSDCPCCGHYLTNNQLY 102
           ++ + K + CPIC+++IKE   T C H FC  C++  L   +  S CP C + +T   L 
Sbjct: 15  INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74

Query: 103 PNF----LLDKLLKKTSARQI 119
            +     L+++LLK   A Q+
Sbjct: 75  ESTRFSQLVEELLKIICAFQL 95

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.2 bits (153), Expect = 2e-13
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 45  GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYP 103
           G  E  +   CPI ++++K+  + + G ++    I   L      CP     L +  L P
Sbjct: 1   GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60

Query: 104 NFLLDKL 110
           N++L  L
Sbjct: 61  NYVLKSL 67

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 46  VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYP- 103
            +   K + C IC  I+ +   T+C H FC +CI+  L+   S CP C +      L   
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76

Query: 104 -NFLLDKL 110
               L+ L
Sbjct: 77  VKSFLNIL 84

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-----PADVHCPVVEMPTRSKLSCLSW 433
           V S+ F RD Q   +  + R +K+++  +  N+     P    C V  +  +  +  ++ 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 434 NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-----EPSMLVSGS 488
            + +   I S   +  V  WD  +   ++  + H     SV  +       E ++  +GS
Sbjct: 317 TQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 489 DDCKV 493
            DCK 
Sbjct: 376 GDCKA 380

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 6e-11
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           +++I F  +   FAT       ++FD                       ++ +S++K S 
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDL-----RADQELMTYSHDNIICGITSVSFSK-SG 282

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             + +   +    VWD            H+ R   +  +  +   + +GS D  +
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 1/78 (1%)

Query: 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD 475
                     +                S   +    +WDV        +  HE    ++ 
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233

Query: 476 FSRTEPSMLVSGSDDCKV 493
           F     +   +GSDD   
Sbjct: 234 FFPNG-NAFATGSDDATC 250

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 6e-11
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 36  TAAASTSEVGVSELDKDMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGH 94
             A + S   +  L+K + C  C  I++E   L  C H FC  C+   +     CP C  
Sbjct: 6   RGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG--CPVCYT 63

Query: 95  YLTNNQLYPNFLLDKLLKK 113
                 L  N  LD +++ 
Sbjct: 64  PAWIQDLKINRQLDSMIQL 82

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 6e-10
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCC 92
          E+         LC IC +  K+  +  CGH  C  C+ +   ++   CP C
Sbjct: 14 ELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 64

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 53.0 bits (127), Expect = 7e-10
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 55 CPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCC 92
          CPIC++     +    C H+FCY+CI   +R    CP C
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 8e-10
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
          E  + + C  C    K   L  C H+ C  C+     +   CP C
Sbjct: 2  EEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLE---ASGMQCPIC 43

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (125), Expect = 9e-10
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 53  MLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103
           MLC I  ++ +   L+      F    +  ++++  + P     L+  ++  
Sbjct: 1   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 48  ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL-RNKSDCPCCGHYLTNNQLYPNFL 106
           ++   +   I  ++++E  +T  G ++    I  HL R     P     LT  QL PN  
Sbjct: 3   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 107 LDKLL 111
           + +++
Sbjct: 63  MKEVI 67

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 49 LDKDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRNKSDCPCC 92
          +D  + C +C+  +++     FL  CGH F   C+   L + S CP C
Sbjct: 2  MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
             + +  +      +    + IK++D ++         C +  +   + +  + ++    
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHS-GG 259

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             I S   +  + VWD   ++ +     HE    S+DF +T P  +V+GS D  V
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTV 313

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 35/149 (23%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS------------------------------- 407
           V+ + F     +  +A     IKV+D+ +                               
Sbjct: 20  VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 408 ---VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464
              +          +  M              + + I S+  +  + +W+V T   V  +
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 465 EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
             H +    V  ++ + +++ S S+D  V
Sbjct: 140 TGHREWVRMVRPNQ-DGTLIASCSNDQTV 167

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM 483
             S ++CL    F  N + +   + ++ V+D   ++ +++   H+   W++ ++     +
Sbjct: 12  MTSVITCLQ---FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GI 66

Query: 484 LVSGSDDC 491
           LVSGS D 
Sbjct: 67  LVSGSTDR 74

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVS 486
           SC +WNK  + +IA       V +++ +  +   V E +EH  +   VD++    + +V+
Sbjct: 11  SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVT 68

Query: 487 GSDDCKV 493
              D   
Sbjct: 69  CGTDRNA 75

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 373 FHSANI--VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSC 430
           +HS  +  +S   +++D    A    +  + +++ +   N+   VH          +++ 
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVH---ELKEHNGQVTG 56

Query: 431 LSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW 472
           + W     NRI +   +    VW +  +              
Sbjct: 57  VDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 6/63 (9%)

Query: 52  DMLCPICMQIIKE-----AFLTACGHSFCYMCIITHLRNKSD-CPCCGHYLTNNQLYPNF 105
           D  CP C             +  CGH+ C  C+       +  CP CG  L  +      
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62

Query: 106 LLD 108
             D
Sbjct: 63  FED 65

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 9e-06
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD 475
                     S +  L +         S+  + ++  W      S+ +  +      S D
Sbjct: 256 PDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD 313

Query: 476 FSRTEPSMLVSGSDDCKV 493
            S  +   +V+GS D K 
Sbjct: 314 ISVDD-KYIVTGSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 381 SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR 440
           S++F    + F + G    +  +               + +    S +     +   K  
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPY--------GASIFQSKESSSVLSCDISVDDK-Y 320

Query: 441 IASSDYEGIVTVWDV 455
           I +   +   TV++V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 428 LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
           ++CL    F  NRI S   +  + VW   T + +     H    WS    
Sbjct: 20  ITCLQ---FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
           ++ S +E    D +  +      +K++D  +             +       S ++  +F
Sbjct: 218 SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ-------SAVTCLQF 268

Query: 437 SKNRIASSDYEGIVTVWDVTTQQSV-----MEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
           +KN + +S  +G V +WD+ T + +     +E        W +  S T+  +   GS +
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY 446
           D     +  +   I+V+D           +C       +S  S +       N + S + 
Sbjct: 186 DGIHVVSGSLDTSIRVWDVE-------TGNCIHTLTGHQSLTSGME---LKDNILVSGNA 235

Query: 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +  V +WD+ T Q +   +   K   +V   +   + +++ SDD  V
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 55 CPICMQII----KEAFLTACGHSFCYMCIITHLRNKSDCPC 91
          CP+CM+ +       F   CG+  C  C      +++    
Sbjct: 3  CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP 43

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 22/116 (18%)

Query: 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY 446
            D+L  +      I+++D          + C             +   +F   RI S  Y
Sbjct: 187 RDRLVVSGSSDNTIRLWD----------IECGACLRVLEGHEELVRCIRFDNKRIVSGAY 236

Query: 447 EGIVTVWDVTTQQS---------VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
           +G + VWD+              +    EH  R + + F       +VS S D  +
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
            CL ++     +I S   +  + +WD  T +       H      + + 
Sbjct: 19  YCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWS 473
              + +     +    + +     + A+   +  + VWDVTT + V ++  ++ +     
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 474 VDFSRTEPSMLVSGSDDCKV 493
           V    T    ++S S D  +
Sbjct: 301 VGVVATGNGRIISLSLDGTL 320

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--QSVMEYEEHEKRA-WSVDFSRTE 480
            R+  + LS++  +            V   D        V+++  H      +V FS  +
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 481 PS-MLVSGSDDCKV 493
            S  L SG +  KV
Sbjct: 76  GSQYLCSGDESGKV 89

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 47  SELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105
           ++   + L PI   ++ +  +      +     I  HL +    P     LT +Q+ PN 
Sbjct: 17  ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76

Query: 106 LLDKLLKKTSARQISKTAS 124
            L + +++  A +  ++  
Sbjct: 77  ELKEKIQRWLAERKQQSGP 95

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLV 485
           S +     SK+ +  + ++G +TV+    Q   ++      ++      +F       + 
Sbjct: 15  SDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 486 SGSDDC 491
            G+   
Sbjct: 74  VGTVQG 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
           +S I+      L         + V+      +  A     +  +  +  L C ++   + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYK----FDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW 472
            +I     +G +   D+    S      +E    
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 50 DKDMLCPICMQ-----IIKEAFLTACGHSFCYMCIITHLR--NKSDCPCCGH 94
          +   +C IC +       +    T    +    C+ T L     + C  CG 
Sbjct: 4  EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 22/139 (15%)

Query: 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR-----SKL 428
           H A+I  S+     +    +      +KV+D   + NE          +          L
Sbjct: 13  HDADI-FSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR--------------AWSV 474
             +  + F    +A++ + G +  + +T +    +    +                 W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 475 DFSRTEPSMLVSGSDDCKV 493
              R     LV+       
Sbjct: 130 SNDRLLSHRLVATDVKGTT 148

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 423 PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS 482
             R     L     + ++I   +   +     V +      Y EH  +      S +   
Sbjct: 15  TARGTAVVLGNTP-AGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGY- 71

Query: 483 MLVSGSDDCKVLY 495
              SG     V  
Sbjct: 72  YCASGDVHGNVRI 84

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH---EKRAW 472
               ++    S             +IAS+  +  + +W+V T +           E +  
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 473 SVDFSRTEPSMLVSGSDDCKV 493
            + ++      LVS S +  +
Sbjct: 288 GIIWT---KQALVSISANGFI 305

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 18/56 (32%)

Query: 55 CPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNKSDCPCC 92
          C IC   I +                       C H+F + CI   L+ +  CP  
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 14/76 (18%)

Query: 52  DMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNKS-----------DCPCCGHYLT 97
              C +C+          +  C   FC +C+  ++               D  C      
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64

Query: 98  NNQLYPNFLLDKLLKK 113
                   +  +++++
Sbjct: 65  QENEIECMVAAEIMQR 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.82
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.76
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.76
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.75
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.75
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.73
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.73
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.73
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.73
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.72
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.7
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.7
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.69
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.69
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.69
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.68
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.68
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.67
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.67
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.63
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.6
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.59
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.58
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.58
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.58
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.55
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.54
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.53
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.51
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.45
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.44
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.44
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.42
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.4
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.38
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.38
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.37
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.16
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.14
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.12
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.03
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.01
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.98
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.97
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.59
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.41
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.07
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.02
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.0
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.48
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.34
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.01
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.42
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.95
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.77
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	94.69
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	94.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.43
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	90.24
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	89.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	88.62
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	87.68
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	87.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	86.73
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	83.58
d2fiya1	290	FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId	82.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.45
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	82.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.05

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=5.8e-20  Score=175.23  Aligned_cols=141  Identities=14%  Similarity=0.152  Sum_probs=122.2

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ....+++|..|..+++|++.   ....+..+.     +|.+.|++++|+|++++|++|+.|++|++||+...        
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~---~~~~~~~~~-----~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--------  258 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVR---EGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--------  258 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETT---TTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred             ccceeEEeecCceEEEEECC---CCcEEEEEe-----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc--------
Confidence            34456778889999999984   345555555     89999999999999999999999999999999876        


Q ss_pred             CCee---ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          417 CPVV---EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       417 ~~~~---~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ....   ...+...+.+++|+|+ +.+|++|+.||.|+|||+.++..+..+.+|.++|++++|+| ++.+|+|||.||+|
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSS-SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCE
T ss_pred             ccccccccccccCceEEEEECCC-CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEE
Confidence            2222   2245567999999999 89999999999999999999999999999999999999999 99999999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       337 ~i  338 (340)
T d1tbga_         337 KI  338 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.3e-18  Score=169.51  Aligned_cols=150  Identities=13%  Similarity=0.199  Sum_probs=122.3

Q ss_pred             cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      .+..++..+++|+.|+.|.||+... .+...+..++     +|.+.|++++|+|++++|++|+.|++|+|||+..+.   
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~-----gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~---   84 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT---   84 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE---
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCC-CCEEEEEEec-----CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc---
Confidence            3445677788899999999999742 3344566666     899999999999999999999999999999998751   


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEee
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                        .........|...|.+++|+|+ +..|++|+.|++|++|++.....    .....+|...|.+++|+| ++.+|++|+
T Consensus        85 --~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s  160 (371)
T d1k8kc_          85 --WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGS  160 (371)
T ss_dssp             --EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred             --cccccccccccccccccccccc-cccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccc
Confidence              1112223357788999999999 89999999999999999876543    344567899999999999 999999999


Q ss_pred             CCCcEeC
Q 048199          489 DDCKVLY  495 (495)
Q Consensus       489 ~D~~v~l  495 (495)
                      .|++|++
T Consensus       161 ~D~~v~v  167 (371)
T d1k8kc_         161 CDFKCRI  167 (371)
T ss_dssp             TTSCEEE
T ss_pred             cCcEEEE
Confidence            9999874

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2e-19  Score=132.93  Aligned_cols=69  Identities=20%  Similarity=0.325  Sum_probs=63.2

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ++.++|.||||+++|++||+++|||+||+.||.+|+... ..||.||.++...++.+|..+.++|+.+..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~   72 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS   72 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999754 589999999999999999999999998753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=2.1e-19  Score=132.27  Aligned_cols=69  Identities=23%  Similarity=0.483  Sum_probs=63.6

Q ss_pred             CCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ++.++|.||||+++|+|||+++|||+||+.||.+|+... ..||.|+.++...++.+|+.+.++|+.+..
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~   73 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999765 579999999999999999999999998854

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.4e-18  Score=167.68  Aligned_cols=154  Identities=19%  Similarity=0.247  Sum_probs=118.7

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC-
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA-  413 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~-  413 (495)
                      ++..+++|+.|+.+.+|+....   ..+..+..  ....+|.+.|+++.|+|++++|++++.|++|++||+........ 
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             CCCeEEEEcCCCeEEEeecccC---ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence            4456778899999999998532   22333322  12337999999999999999999999999999999987621110 


Q ss_pred             ----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEe------ecCCCCe
Q 048199          414 ----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF------SRTEPSM  483 (495)
Q Consensus       414 ----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~------~~~~g~~  483 (495)
                          ..........|...|.+++|+|+ +.+|++|+.||.|++||+++++++.++.+|.+.|.++++      +| ++.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~  370 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNV  370 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEE
T ss_pred             ccccccceeeecccccceEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCE
Confidence                11122334467889999999999 899999999999999999999999999999999999974      66 8899


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      |+|||.||+|+|
T Consensus       371 l~s~s~Dg~I~i  382 (388)
T d1erja_         371 FATGSGDCKARI  382 (388)
T ss_dssp             EEEEETTSEEEE
T ss_pred             EEEEeCCCEEEE
Confidence            999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1.5e-17  Score=158.02  Aligned_cols=148  Identities=16%  Similarity=0.134  Sum_probs=122.6

Q ss_pred             ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC--CCcEEEEEccccccC
Q 048199          334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV--SRRIKVFDFASVVNE  411 (495)
Q Consensus       334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~--d~~i~vwd~~~~~~~  411 (495)
                      ..+++..+++|+.|++++||++.... ......+.     +|.+.|.+++|+|++++|++++.  ++.++||+++++   
T Consensus        66 ~sp~g~~latg~~dg~i~iwd~~~~~-~~~~~~~~-----~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~---  136 (311)
T d1nr0a1          66 TSPSGYYCASGDVHGNVRIWDTTQTT-HILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---  136 (311)
T ss_dssp             ECTTSSEEEEEETTSEEEEEESSSTT-CCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---
T ss_pred             EeCCCCeEeccccCceEeeeeeeccc-cccccccc-----cccCccccccccccccccccccccccccccccccccc---
Confidence            34567778899999999999985422 22233444     78999999999999999999875  566999999886   


Q ss_pred             CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                          ........|...|++++|+|++...|++|+.||.|++||++++.....+.+|...|+++.|+| ++.+|++++.|+
T Consensus       137 ----~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~  211 (311)
T d1nr0a1         137 ----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDG  211 (311)
T ss_dssp             ----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             ----cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc-cccccccccccc
Confidence                111223457788999999999555689999999999999999999999999999999999999 999999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|++
T Consensus       212 ~v~~  215 (311)
T d1nr0a1         212 TIVL  215 (311)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            9874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-17  Score=158.81  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=120.3

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      ..+..+..|+.|+.+++|++..   ...+..+      .|.+.|.+++|+|++++|++++.|+.|++||+...       
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~---~~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-------  256 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLRE---GRQLQQH------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------  256 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT---TEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------
T ss_pred             cccccccccccccccccccccc---ceeeccc------ccccceEEEEEcccccccceecccccccccccccc-------
Confidence            4456677888899999999843   2333332      46889999999999999999999999999999886       


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                       .......|...|++++|+|+ +.+|++|+.||.|++||+.++..+..+. |...|++++|+| ++.+|++||.||+|+|
T Consensus       257 -~~~~~~~~~~~i~~v~~s~~-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D~~I~v  332 (337)
T d1gxra_         257 -DKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATV  332 (337)
T ss_dssp             -CEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEE
T ss_pred             -ccccccccccccceEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Confidence             34455678889999999999 8999999999999999999999888765 788999999999 9999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.6e-17  Score=163.07  Aligned_cols=153  Identities=18%  Similarity=0.292  Sum_probs=112.6

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeecc-ccccCCCcEEEEEEccCCCEEEEEeCCCc---EEEEEcccccc--CC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRR---IKVFDFASVVN--EP  412 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~l~s~s~d~~---i~vwd~~~~~~--~~  412 (495)
                      ..+++|+.|++++||++..   ...+..+... .+.+|...|++++|+|++++|++|+.|++   |++||+.++..  .+
T Consensus       196 g~lasgs~Dg~i~iwd~~~---~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l  272 (393)
T d1sq9a_         196 GLIATGFNNGTVQISELST---LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  272 (393)
T ss_dssp             SEEEEECTTSEEEEEETTT---TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeecc---cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeee
Confidence            4677899999999999843   3444444432 34589999999999999999999999975   99999987611  10


Q ss_pred             C----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcE-----------------
Q 048199          413 A----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA-----------------  471 (495)
Q Consensus       413 ~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v-----------------  471 (495)
                      .    .........+|.+.|++++|+|+ +.+|+||+.|++|+|||+.+|+++.++.+|.+.|                 
T Consensus       273 ~~~~~~~~~~~~~~gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         273 SVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ccccccccceeeeecccCceeeeccCCC-CCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            0    11112223478899999999999 8999999999999999999999999999986544                 


Q ss_pred             ----EEEEeecC---------CCCeEEEeeCCCcEeC
Q 048199          472 ----WSVDFSRT---------EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       472 ----~~v~~~~~---------~g~~l~s~s~D~~v~l  495 (495)
                          +++.|.+.         ....|++++.|+.||+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         352 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             EcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence                45555441         1134777788887764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=8.1e-18  Score=165.12  Aligned_cols=153  Identities=11%  Similarity=0.154  Sum_probs=113.1

Q ss_pred             cCcccchhhHHhhhhhhhcccC--------ceEEEEee--ccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199          339 EGYNAGLADFQSVLTTFTRYSR--------LRVIAELR--HGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV  408 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~--------~~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~  408 (495)
                      ..+..++.|+++.+|++.....        ......+.  ......+...+.+++|+|++ +|++|+.|++|+|||+.++
T Consensus       137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred             cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc
Confidence            3456677788999998642211        01111111  11222467789999999987 8899999999999999876


Q ss_pred             ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc---EEEEeCCCCcceeecc-------------cccCcEE
Q 048199          409 VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI---VTVWDVTTQQSVMEYE-------------EHEKRAW  472 (495)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~---v~iwd~~~~~~~~~~~-------------~h~~~v~  472 (495)
                      ... ..........+|...|++++|+|+ +.+|++|+.|++   |++||+.++..+..+.             +|.+.|+
T Consensus       216 ~~~-~~~~~~~~l~~h~~~V~~l~~spd-g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         216 RPL-YNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             EEE-EEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             ccc-cccccccccccccceEEEcccccc-cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            111 000111123468889999999999 999999999875   9999999988777663             7999999


Q ss_pred             EEEeecCCCCeEEEeeCCCcEeC
Q 048199          473 SVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       473 ~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +++|+| ++.+|+|||.|++|+|
T Consensus       294 ~l~fsp-d~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         294 SLSFND-SGETLCSAGWDGKLRF  315 (393)
T ss_dssp             EEEECS-SSSEEEEEETTSEEEE
T ss_pred             eeccCC-CCCeeEEECCCCEEEE
Confidence            999999 9999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.4e-17  Score=156.09  Aligned_cols=143  Identities=18%  Similarity=0.245  Sum_probs=120.5

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC--------------------CEEEEEe
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD--------------------QLFATAG  395 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~--------------------~~l~s~s  395 (495)
                      .++..+++|+.|+.+++|+...   ...+..+.     +|...|.++.|+|++                    .++++++
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVAT---KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeecc---ceeeEEEe-----cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            3456678889999999999843   23444444     678888888887753                    4689999


Q ss_pred             CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEE
Q 048199          396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD  475 (495)
Q Consensus       396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~  475 (495)
                      .|+.|++||+.++       .......+|...|.+++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|.+.|++++
T Consensus       225 ~d~~i~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         225 RDKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  296 (317)
T ss_dssp             TTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             CCCEEEEEECCCC-------cEEEEEeCCCCCEEEEEECCC-CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            9999999999987       222233468889999999999 89999999999999999999999999999999999999


Q ss_pred             eecCCCCeEEEeeCCCcEeC
Q 048199          476 FSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       476 ~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+| ++.+|+|||.||+|+|
T Consensus       297 ~s~-~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         297 FHK-TAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             ECS-SSSCEEEEETTSEEEE
T ss_pred             EcC-CCCEEEEEeCCCeEEE
Confidence            999 9999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=1.9e-17  Score=157.14  Aligned_cols=144  Identities=15%  Similarity=0.226  Sum_probs=113.6

Q ss_pred             CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      .+++|+.|+.+++|++..   ......+.     +|...|+++.|+|++++|++++.|+.|++||+..+...........
T Consensus       161 ~l~sgs~d~~i~i~d~~~---~~~~~~~~-----~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~  232 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPP---FKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  232 (311)
T ss_dssp             EEEEEETTSCEEEEETTT---BEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             eecccccccccccccccc---cccccccc-----cccccccccccCcccccccccccccccccccccccccccccccccc
Confidence            367899999999999853   34445444     7899999999999999999999999999999987621110001122


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC---cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK---RAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      ...+|.+.|++++|+|+ +.+|++|+.||+|+|||+++++++.++..|..   .+.++.|   ++.+|++++.||.|++
T Consensus       233 ~~~~h~~~V~~~~~s~~-~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~---~~~~l~s~s~dG~i~~  307 (311)
T d1nr0a1         233 KNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINF  307 (311)
T ss_dssp             SSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEE
T ss_pred             ccccccccccccccCCC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe---cCCEEEEEECCCEEEE
Confidence            23467889999999999 89999999999999999999999999887643   3445555   4578999999999975

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.9e-19  Score=137.80  Aligned_cols=71  Identities=32%  Similarity=0.751  Sum_probs=62.6

Q ss_pred             ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      ...+++.|.||||+++|.+|++++|||+||+.||.+|+...   ..||.||.++..+++.+|..+.++++.+..
T Consensus        15 ~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             HHhcccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999764   489999999999999999888888887643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=5.4e-16  Score=147.13  Aligned_cols=162  Identities=11%  Similarity=0.120  Sum_probs=127.0

Q ss_pred             CCCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 048199          324 QPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKV  402 (495)
Q Consensus       324 ~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~v  402 (495)
                      .+|...+....+ .++..+++|+.|++++||++.   ....+..+.     +|...|.+++|+|++.++++|+.|+++++
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~---~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY---TTNKVHAIP-----LRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT---TTEEEEEEE-----CSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecc---cceeEEEEe-----cccccEEeeEeeccceeeeeecccceeec
Confidence            444444444433 456678999999999999984   345566665     78999999999999999999999999999


Q ss_pred             EEccccccCCC------CcCC--------------------------------CeeecCCCCCeEEEEEcCCCCCEEEEe
Q 048199          403 FDFASVVNEPA------DVHC--------------------------------PVVEMPTRSKLSCLSWNKFSKNRIASS  444 (495)
Q Consensus       403 wd~~~~~~~~~------~~~~--------------------------------~~~~~~~~~~i~~~~~~p~~~~~l~sg  444 (495)
                      |+.........      .+..                                ......+...+....+.+. ..++++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  202 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSG  202 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT-SSEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc-cceeEEe
Confidence            99776421110      0000                                0011123455778888888 8899999


Q ss_pred             cCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          445 DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +.|+.|++||++++.++..+.+|...|++++|+| ++.+|++|+.|+.|++
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~  252 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRL  252 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Confidence            9999999999999999999999999999999999 9999999999999874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.8e-18  Score=128.08  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             cCCCCccccccccchhhhccccCCC-CccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199           47 SELDKDMLCPICMQIIKEAFLTACG-HSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ  118 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~CG-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~  118 (495)
                      .++.++|.||||+++|+|||+++|| |+||+.||.+|+.....||.|++++...+|.+|..+.+.|+.+....
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~   89 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHH
Confidence            4566789999999999999999876 58999999999999999999999999999999999999999887643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.9e-17  Score=153.67  Aligned_cols=150  Identities=16%  Similarity=0.167  Sum_probs=121.9

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      ..++..+++|+ |+.|+||++........+..+.   ..+|.+.|.+++|+|++++|++|+.|++|++||+.....    
T Consensus        60 s~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~---~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~----  131 (337)
T d1gxra_          60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP----  131 (337)
T ss_dssp             CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------
T ss_pred             CCCCCEEEEEE-CCEEEEEEccCCcccceeEEee---ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc----
Confidence            34556677776 6789999986543333333222   237999999999999999999999999999999986511    


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                       ........|...+..+.|+|+ +.++++++.|+.|++||+.++.....+.+|...|++++|++ ++.++++|+.|+.|+
T Consensus       132 -~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~  208 (337)
T d1gxra_         132 -RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVR  208 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             -ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence             111223357778999999999 89999999999999999999999999999999999999999 999999999999987


Q ss_pred             C
Q 048199          495 Y  495 (495)
Q Consensus       495 l  495 (495)
                      +
T Consensus       209 i  209 (337)
T d1gxra_         209 S  209 (337)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.7e-18  Score=126.57  Aligned_cols=66  Identities=29%  Similarity=0.561  Sum_probs=53.7

Q ss_pred             cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCc-chHHHHHH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLY-PNFLLDKL  110 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~-~n~~l~~~  110 (495)
                      ..+++.+.+.|+||++.|.+|++++|||+||+.||.+|++.. .+||.||.++...++. |...+.++
T Consensus        16 ~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~   83 (86)
T d1rmda2          16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI   83 (86)
T ss_dssp             CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHH
T ss_pred             chhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHH
Confidence            345556678999999999999999999999999999999754 5899999999877764 44444443

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.9e-18  Score=131.74  Aligned_cols=70  Identities=27%  Similarity=0.557  Sum_probs=61.8

Q ss_pred             cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199           45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA  116 (495)
Q Consensus        45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~  116 (495)
                      .++.+++.|.|+||+++|.+|+.+ +|||+||+.||.+|+.  ..||.||.++...++.+|..+..+++.+..
T Consensus        15 ~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            346677889999999999999975 8999999999999985  469999999999999999999999887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.8e-16  Score=154.10  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=123.1

Q ss_pred             CCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          325 PHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      .|...+.... .+++..+++|+.|++++||++.. ........+.     +|...|.++.|+|+++.|++++.|++|++|
T Consensus        49 gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~~~-----~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVIL-----RINRAARCVRWAPNEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEECC-----CCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc-cccccccccc-----cccccccccccccccccceeecccCcceee
Confidence            3444444443 34667788999999999999842 2223333333     788999999999999999999999999999


Q ss_pred             EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC------------------cceeecc
Q 048199          404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ------------------QSVMEYE  465 (495)
Q Consensus       404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~------------------~~~~~~~  465 (495)
                      ++.......   ........|...|.+++|+|+ +.+|++|+.||+|++||....                  ..+....
T Consensus       123 ~~~~~~~~~---~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (371)
T d1k8kc_         123 YFEQENDWW---VCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  198 (371)
T ss_dssp             EEETTTTEE---EEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             eeecccccc---ccccccccccccccccccccc-ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc
Confidence            998751100   011222357788999999999 899999999999999997642                  2455667


Q ss_pred             cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          466 EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|...|.+++|+| ++.+|++++.|+.|++
T Consensus       199 ~~~~~v~~~~~s~-~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         199 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             CccCcEEEEEeec-ccccccccccCCcceE
Confidence            8999999999999 9999999999999874

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.7e-18  Score=116.63  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=48.3

Q ss_pred             cccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199           53 MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN  104 (495)
Q Consensus        53 l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n  104 (495)
                      |.|+||++.+++||++ .|||+||+.||.+|+..+.+||+||+++...+|.+.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence            6799999999999987 599999999999999999999999999999888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.5e-16  Score=145.79  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=110.2

Q ss_pred             ccCcccchh-hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          338 REGYNAGLA-DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       338 ~~~~~~g~~-d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      +..++.|.. +..+++|++...   .....+..    .|.+.|++++|+|++.+|++|+.|+.|++||+.++.       
T Consensus       130 ~~~~~v~~~~~~~v~~~~~~~~---~~~~~~~~----~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------  195 (287)
T d1pgua2         130 QNYVAVGLEEGNTIQVFKLSDL---EVSFDLKT----PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-------  195 (287)
T ss_dssp             SSEEEEEETTTSCEEEEETTEE---EEEEECSS----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------
T ss_pred             Ccceeeeccccceeeeeecccc---ceeeeeee----ccCCceeEEEeccCccccccccccccccceeecccc-------
Confidence            334444444 456888987421   22222322    578899999999999999999999999999998861       


Q ss_pred             CCe-eecCCCCCeEEEEEcCCC---------CCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEE
Q 048199          417 CPV-VEMPTRSKLSCLSWNKFS---------KNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLV  485 (495)
Q Consensus       417 ~~~-~~~~~~~~i~~~~~~p~~---------~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~  485 (495)
                      ... ....|..+|.+++|+|..         +.+|++|+.|++|+|||+++ +..+..+.+|...|++++|+| ++ .|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~  273 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLV  273 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEE
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEE
Confidence            111 123578889999999852         56899999999999999977 567788889999999999998 75 689


Q ss_pred             EeeCCCcEeC
Q 048199          486 SGSDDCKVLY  495 (495)
Q Consensus       486 s~s~D~~v~l  495 (495)
                      |+|.|++|+|
T Consensus       274 s~g~D~~v~i  283 (287)
T d1pgua2         274 SSGADACIKR  283 (287)
T ss_dssp             EEETTSCEEE
T ss_pred             EEECCCeEEE
Confidence            9999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.63  E-value=1.1e-15  Score=143.24  Aligned_cols=145  Identities=15%  Similarity=0.263  Sum_probs=109.1

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH  416 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  416 (495)
                      ++..++.|..|+.+.+|++... ....+.      ...|...|++++|+|++.+|++++.|+.|++||+.++...    .
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~-~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----~  215 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGA-SVSEVK------TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL----A  215 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETT-EEEEEE------EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE----S
T ss_pred             cccccccccccccccccccccc-cccccc------cccccccccccccccccccccccccccccccccccccccc----c
Confidence            4456778889999999997421 111111      1268899999999999999999999999999999876111    0


Q ss_pred             CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce--eecccc-cCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV--MEYEEH-EKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~--~~~~~h-~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      .......|...|++++|+|+ +.+|++|+.||.|+|||++++...  .....| ...|.++.|.  ++.+|+|||.|++|
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPD-NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNI  292 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE--ETTEEEEEETTSCE
T ss_pred             cccccccccccccccccccc-ccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC--CCCEEEEEeCCCEE
Confidence            11122357789999999999 899999999999999999876543  333334 4567777665  56799999999999


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       293 ~i  294 (299)
T d1nr0a2         293 KF  294 (299)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3e-15  Score=145.34  Aligned_cols=119  Identities=19%  Similarity=0.326  Sum_probs=99.1

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--CCCc---------CCCeeecCCCCCeEEEEEcCCCCCEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--PADV---------HCPVVEMPTRSKLSCLSWNKFSKNRIA  442 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~---------~~~~~~~~~~~~i~~~~~~p~~~~~l~  442 (495)
                      +|++.|++++|+|+|++|++|+ |++|+|||+.++...  +...         ........|...|++++|+|+ +.+|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCcce
Confidence            7999999999999999999987 999999999876110  0000         011112246678999999999 99999


Q ss_pred             EecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       443 sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|+.||.|++||...+..+..+.+|...|++++|++ ++..+++|+.|+.|++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             eccccccccccccccccccccccccccccccccccc-ccccccccccceeeee
Confidence            999999999999999999999999999999999999 9999999999998864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3.2e-15  Score=139.62  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=129.8

Q ss_pred             CCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          325 PHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       325 ~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      +|...+....+ .++..+++|+.|++|+||++..   ...+..+.     +|.+.|+++.|+|++.++++++.++++.+|
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~-----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT---CCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCEEEEEe-----CCCCcEEEEeeecccccccccccccccccc
Confidence            44444444443 4567789999999999999853   23455555     899999999999999999999999999999


Q ss_pred             EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199          404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM  483 (495)
Q Consensus       404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~  483 (495)
                      +....       ........+...+.++.|+|+ +..+++++.|+.+++||++++..+..+.+|...+.+++|++ ++.+
T Consensus        87 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  157 (317)
T d1vyhc1          87 DFQGF-------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTL  157 (317)
T ss_dssp             ETTSS-------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSE
T ss_pred             ccccc-------ccccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCE
Confidence            98876       223333467788999999999 89999999999999999999999999999999999999999 9999


Q ss_pred             EEEeeCCCcEeC
Q 048199          484 LVSGSDDCKVLY  495 (495)
Q Consensus       484 l~s~s~D~~v~l  495 (495)
                      |++++.|+.|++
T Consensus       158 l~~~~~d~~v~~  169 (317)
T d1vyhc1         158 IASCSNDQTVRV  169 (317)
T ss_dssp             EEEEETTSCEEE
T ss_pred             EEEEeCCCeEEE
Confidence            999999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.6e-15  Score=139.66  Aligned_cols=139  Identities=17%  Similarity=0.263  Sum_probs=108.8

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .++..+++|+.|+.+++|++..   ...+..+.     +|...|.++.+++  ++|++++.|++|++||+......    
T Consensus       185 ~~~~~l~s~~~dg~i~~~d~~~---~~~~~~~~-----~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~----  250 (342)
T d2ovrb2         185 FDGIHVVSGSLDTSIRVWDVET---GNCIHTLT-----GHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL----  250 (342)
T ss_dssp             ECSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEE----
T ss_pred             CCCCEEEEEeCCCeEEEeeccc---ceeeeEec-----ccccceeEEecCC--CEEEEEcCCCEEEEEeccccccc----
Confidence            3456678899999999999843   23444444     7889999888764  69999999999999999876110    


Q ss_pred             CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-----cccCcEEEEEeecCCCCeEEEeeCC
Q 048199          416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ........|...+.++.|+   +.++++|+.||+|+|||+++++.+..+.     +|...|++++|+| ++.+|++|+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~d  326 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN  326 (342)
T ss_dssp             EEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred             ccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCC
Confidence            0000112355677888887   4599999999999999999999887764     6788999999999 99999999999


Q ss_pred             Cc
Q 048199          491 CK  492 (495)
Q Consensus       491 ~~  492 (495)
                      |+
T Consensus       327 Gt  328 (342)
T d2ovrb2         327 GT  328 (342)
T ss_dssp             SS
T ss_pred             CC
Confidence            96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4e-15  Score=141.72  Aligned_cols=136  Identities=8%  Similarity=0.083  Sum_probs=106.0

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeeecCCC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR  425 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  425 (495)
                      +..+.+|+..   ....+..+.     +|...|.+++|+|++.+ +++++.|+.|++||.......    ........|.
T Consensus       138 ~~~~~~~~~~---~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~~~~~~  205 (325)
T d1pgua1         138 DNFGVFISWD---SGNSLGEVS-----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRTHHKQG  205 (325)
T ss_dssp             SCSEEEEETT---TCCEEEECC-----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECSSSCTT
T ss_pred             cceEEEEeec---ccccceeee-----ecccccccccccccccceEEEeecccccccccccccccc----eecccccCCC
Confidence            4456666652   234455554     79999999999998774 778999999999998765110    0001112466


Q ss_pred             CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEee---cCCCCeEEEeeCCCcEeC
Q 048199          426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS---RTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       426 ~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~---~~~g~~l~s~s~D~~v~l  495 (495)
                      ..|++++|+|+.+.+|++|+.||.|++||+++++.+..+.+|...+.++.|+   + +|.+|++++.|+.|+|
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRV  277 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEE
Confidence            7799999999878899999999999999999999999999998877666555   5 7899999999999985

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-16  Score=105.65  Aligned_cols=47  Identities=23%  Similarity=0.485  Sum_probs=42.1

Q ss_pred             CccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199           51 KDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ  100 (495)
Q Consensus        51 ~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  100 (495)
                      +.|.|+||++.|.+|++++|||+||+.||.+|   ..+||.||+++....
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            45899999999999999999999999999875   568999999998654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=9e-15  Score=139.18  Aligned_cols=150  Identities=11%  Similarity=0.078  Sum_probs=114.7

Q ss_pred             ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEccccccCCCCc
Q 048199          338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG--VSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~  415 (495)
                      +..+++|+.|++++||++........+.......+..|.+.|.+++|++++.++++++  .++.+++|+.+++       
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~-------  149 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-------  149 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-------
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-------
Confidence            3457789999999999985433222222211122336889999999999999888765  4778999999876       


Q ss_pred             CCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee---cccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          416 HCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       416 ~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                       ..+.. .+|...|.+++|+|++..++++++.||.|++||...+.....   +.+|...|++++|+|..+.+|++++.|+
T Consensus       150 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         150 -NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             -CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             -ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc
Confidence             22333 357889999999999556788999999999999987765444   4567888999999994578999999999


Q ss_pred             cEeC
Q 048199          492 KVLY  495 (495)
Q Consensus       492 ~v~l  495 (495)
                      .|++
T Consensus       229 ~i~i  232 (325)
T d1pgua1         229 KISC  232 (325)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence            9975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=1.7e-14  Score=134.80  Aligned_cols=112  Identities=16%  Similarity=0.274  Sum_probs=96.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ...+.+++|+|++++|++|+.|+.|++||+.+..      ........|...|++++|+|+ +.+|++|+.||.|++||+
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~  208 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS------VSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSV  208 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE------EEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEEG
T ss_pred             cccccccccccccccccccccccccccccccccc------ccccccccccccccccccccc-cccccccccccccccccc
Confidence            4567889999999999999999999999998751      122344568889999999999 899999999999999999


Q ss_pred             CCCcce---eecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          456 TTQQSV---MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       456 ~~~~~~---~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .++..+   ..+.+|...|++++|+| ++.+|++|+.|+.|+|
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~i  250 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIV  250 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccccccc-cccceEEEcCCCEEEE
Confidence            876543   55678999999999999 9999999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.3e-15  Score=139.60  Aligned_cols=137  Identities=14%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV  415 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  415 (495)
                      .....+..++.|+++++|++..   ...+..+.     +|...|.++.|+  +++|++++.|++|++||+.+.       
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~-----~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~-------  273 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLEN---GELMYTLQ-----GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY-------  273 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC-------
T ss_pred             ccceeeecccccceEEeeeccc---cccccccc-----cccccccccccc--cceeeeeeccccccccccccc-------
Confidence            3455677888899999999843   34455555     899999999996  469999999999999999876       


Q ss_pred             CCCeeecCCCCCeEEEE-EcCCCCCEEEEecCCCcEEEEeCCCCccee-ecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          416 HCPVVEMPTRSKLSCLS-WNKFSKNRIASSDYEGIVTVWDVTTQQSVM-EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       416 ~~~~~~~~~~~~i~~~~-~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       .... ..|...+.++. |+++ +.+|++|+ ||+|+|||+++|+.+. .+.+|.+.|++++|+| + .++++++.||++
T Consensus       274 -~~~~-~~~~~~~~~~~~~~~~-~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~  347 (355)
T d1nexb2         274 -SRKF-SYHHTNLSAITTFYVS-DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQS  347 (355)
T ss_dssp             -CEEE-EEECTTCCCCCEEEEC-SSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCE
T ss_pred             -ceec-ccccCCceEEEEEcCC-CCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcE
Confidence             2222 23444455554 4555 77777765 8999999999999885 5788999999999998 6 578889999987


Q ss_pred             eC
Q 048199          494 LY  495 (495)
Q Consensus       494 ~l  495 (495)
                      +|
T Consensus       348 ~l  349 (355)
T d1nexb2         348 FL  349 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.3e-14  Score=134.17  Aligned_cols=148  Identities=11%  Similarity=0.178  Sum_probs=115.7

Q ss_pred             cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC---
Q 048199          335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE---  411 (495)
Q Consensus       335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~---  411 (495)
                      ..++..+++|+.|++|+||++.   ....+..+.     +|.+.|++++|+|+ .+|++|+.|++|++|++......   
T Consensus        20 ~~~~~~l~tgs~Dg~i~vWd~~---~~~~~~~l~-----~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          20 QFEDNYVITGADDKMIRVYDSI---NKKFLLQLS-----GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             EEETTEEEEEETTTEEEEEETT---TTEEEEEEE-----CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEECC---CCcEEEEEE-----CCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc
Confidence            4467789999999999999984   345666766     89999999999985 58899999999999997653100   


Q ss_pred             ----------------------------------CCCc--------------------------------C---------
Q 048199          412 ----------------------------------PADV--------------------------------H---------  416 (495)
Q Consensus       412 ----------------------------------~~~~--------------------------------~---------  416 (495)
                                                        +...                                .         
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (355)
T d1nexb2          91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH  170 (355)
T ss_dssp             CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred             ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence                                              0000                                0         


Q ss_pred             ----------CCe------------eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEE
Q 048199          417 ----------CPV------------VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV  474 (495)
Q Consensus       417 ----------~~~------------~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v  474 (495)
                                ..+            ....+...+.++.|+|+ +.++++++.||.|++||+.++..+..+.+|...|.++
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred             cceeeeecccceeeeeecccccceeeeecccccccccccccc-ceeeecccccceEEeeecccccccccccccccccccc
Confidence                      000            00123345677889998 8899999999999999999999999999999999999


Q ss_pred             EeecCCCCeEEEeeCCCcEeC
Q 048199          475 DFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       475 ~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      +|++   .+|++|+.||+|++
T Consensus       250 ~~~~---~~l~~~~~dg~i~i  267 (355)
T d1nexb2         250 RLSD---KFLVSAAADGSIRG  267 (355)
T ss_dssp             EECS---SEEEEECTTSEEEE
T ss_pred             cccc---ceeeeeeccccccc
Confidence            9965   79999999999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=3.3e-14  Score=133.89  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      +|.+.|++|+|+|++++|++||.|++|+|||+......    ........|.+.|.+++|+|+++.+|++|+.||.|++|
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc----eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            89999999999999999999999999999999875110    11223346889999999999867799999999999999


Q ss_pred             eCCCCcceeecccccCcE-EEEEeecCCCCeEEEeeCCCcEeC
Q 048199          454 DVTTQQSVMEYEEHEKRA-WSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       454 d~~~~~~~~~~~~h~~~v-~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |+..+........+...+ ....+.+ ++..+++++.|+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEV  126 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEE
T ss_pred             eccccccccccccccccccccccccc-ccccccccccccccce
Confidence            999887776666554433 4445556 8889999999998864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.9e-15  Score=107.67  Aligned_cols=48  Identities=27%  Similarity=0.686  Sum_probs=43.0

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccC
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNN   99 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~   99 (495)
                      ...|+||++.+.+|++++|||+||+.||.+|+.. ...||.||..+...
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3469999999999999999999999999999975 46899999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-14  Score=100.85  Aligned_cols=51  Identities=27%  Similarity=0.719  Sum_probs=42.0

Q ss_pred             Cccccccccchhhhc-----cccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCC
Q 048199           51 KDMLCPICMQIIKEA-----FLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQL  101 (495)
Q Consensus        51 ~~l~C~IC~~~~~~P-----v~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l  101 (495)
                      |+..||||++.+..+     ++++|||+||..||.+|+.. ..+||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            467899999986543     46699999999999999965 4589999999876654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-13  Score=126.18  Aligned_cols=156  Identities=14%  Similarity=0.134  Sum_probs=113.2

Q ss_pred             CCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199          324 QPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF  403 (495)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw  403 (495)
                      .+|...+..-...++..+++|+.|++|+||++.   ..+.+..+.     +|.+.|++++|+|+  +|++|+.|+++++|
T Consensus        13 ~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~---~~~~~~~~~-----~h~~~V~~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          13 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV---TGKCLRTLV-----GHTGGVWSSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             ECSTTSCEEEEEEETTEEEEEETTSCEEEEETT---TCCEEEECC-----CCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             CCcCCceEEEEEECCCEEEEEeCCCeEEEEECC---CCCEEEEEe-----CCCCCEEEEEeCCC--ccccceeccccccc
Confidence            345443322244567789999999999999984   334566665     89999999999874  99999999999999


Q ss_pred             EccccccCCC---------------------------------CcC----------------------------CC----
Q 048199          404 DFASVVNEPA---------------------------------DVH----------------------------CP----  418 (495)
Q Consensus       404 d~~~~~~~~~---------------------------------~~~----------------------------~~----  418 (495)
                      +.........                                 ...                            ..    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence            9765310000                                 000                            00    


Q ss_pred             --------eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          419 --------VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       419 --------~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                              .....|...+..  +.++ +.+|++|+.||.|++||++.+..+..+.+|...+.++++++   .+|++|+.|
T Consensus       163 d~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d  236 (342)
T d2ovrb2         163 DPETETCLHTLQGHTNRVYS--LQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNAD  236 (342)
T ss_dssp             EGGGTEEEEEECCCSSCEEE--EEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETT
T ss_pred             ecccceeeEEEcCccccccc--ccCC-CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcCC
Confidence                    000112223333  3344 77999999999999999999999999999999999988865   699999999


Q ss_pred             CcEeC
Q 048199          491 CKVLY  495 (495)
Q Consensus       491 ~~v~l  495 (495)
                      +.|++
T Consensus       237 ~~i~i  241 (342)
T d2ovrb2         237 STVKI  241 (342)
T ss_dssp             SCEEE
T ss_pred             CEEEE
Confidence            99875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-13  Score=122.23  Aligned_cols=144  Identities=17%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC--
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA--  413 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~--  413 (495)
                      .++..+++|+.|++|+||++.   ....+..+.     +|.+.|++++|  ++++|++|+.|++|++|++..+.....  
T Consensus        23 ~d~~~l~sgs~Dg~i~vWd~~---~~~~~~~l~-----~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          23 YDDQKIVSGLRDNTIKIWDKN---TLECKRILT-----GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             CCSSEEEEEESSSCEEEEESS---SCCEEEEEC-----CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             EcCCEEEEEeCCCeEEEEECC---CCcEEEEEe-----cCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence            356789999999999999984   345566666     89999999987  578999999999999999876411000  


Q ss_pred             -------------------------------CcC---CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199          414 -------------------------------DVH---CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ  459 (495)
Q Consensus       414 -------------------------------~~~---~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~  459 (495)
                                                     ...   .......|...+..+.+.   ...+++++.|+.|++||++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~  169 (293)
T d1p22a2          93 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCE  169 (293)
T ss_dssp             CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCC
T ss_pred             ccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec---ccccccccCCCceeeecCCCCc
Confidence                                           000   000011233445555554   3356666667777777777666


Q ss_pred             ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          460 SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       460 ~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      .+..+.+|...|..+.+++   .+|++++.|++|+|
T Consensus       170 ~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i  202 (293)
T d1p22a2         170 FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRL  202 (293)
T ss_dssp             EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEE
T ss_pred             EEEEEcccccccccccCCC---CeEEEecCCCEEEE
Confidence            6666666666666665543   56666666666653

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.44  E-value=2.9e-14  Score=95.60  Aligned_cols=49  Identities=27%  Similarity=0.718  Sum_probs=42.4

Q ss_pred             CCCccccccccchhhhc---ccc-CCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           49 LDKDMLCPICMQIIKEA---FLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        49 ~~~~l~C~IC~~~~~~P---v~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      ++++..|+||++.|.+.   +.+ +|||.||..||.+|+..+.+||.||.++.
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            46778899999999864   334 69999999999999999999999999763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.42  E-value=1.7e-14  Score=102.14  Aligned_cols=44  Identities=34%  Similarity=0.865  Sum_probs=40.5

Q ss_pred             ccccccchhhhcc-ccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199           54 LCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLT   97 (495)
Q Consensus        54 ~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~   97 (495)
                      .|+||++.|.+|+ .++|||+||..||.+|+..+.+||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            4999999999875 5799999999999999999999999999875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.1e-13  Score=124.34  Aligned_cols=134  Identities=19%  Similarity=0.335  Sum_probs=102.1

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP  418 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  418 (495)
                      ....+++.|..+++|+...   ...+..+.     +|...|..+.++  +.++++++.|++|++||+.+.       ...
T Consensus       149 ~~~~~~s~d~~i~~~d~~~---~~~~~~~~-----~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-------~~~  211 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTST---CEFVRTLN-----GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-------ACL  211 (293)
T ss_dssp             TEEEEEETTSEEEEEETTT---CCEEEEEE-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-------CEE
T ss_pred             cccccccCCCceeeecCCC---CcEEEEEc-----ccccccccccCC--CCeEEEecCCCEEEEEecccc-------eee
Confidence            3455677888999999843   34455555     677888888775  568999999999999999886       122


Q ss_pred             eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---------CcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---------QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .....+...+..+.  ++ +.+|++|+.||.|++||+.+         ...+..+.+|.+.|++++|+   +.+|+|||.
T Consensus       212 ~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~  285 (293)
T d1p22a2         212 RVLEGHEELVRCIR--FD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSH  285 (293)
T ss_dssp             EEECCCSSCEEEEE--CC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCS
T ss_pred             eeecccceeeeecc--cc-ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEec
Confidence            22334555566544  44 77999999999999999743         34577889999999999995   478999999


Q ss_pred             CCcEeC
Q 048199          490 DCKVLY  495 (495)
Q Consensus       490 D~~v~l  495 (495)
                      ||+|+|
T Consensus       286 Dg~i~i  291 (293)
T d1p22a2         286 DDTILI  291 (293)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            999985

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.8e-14  Score=92.30  Aligned_cols=46  Identities=26%  Similarity=0.731  Sum_probs=38.9

Q ss_pred             cccccccchhhhc----cccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc
Q 048199           53 MLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN   98 (495)
Q Consensus        53 l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~   98 (495)
                      |.||||++.|.+.    +.++|||.||+.||.+|+... .+||.||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            5799999999643    456899999999999999864 589999998864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.1e-12  Score=119.60  Aligned_cols=159  Identities=16%  Similarity=0.200  Sum_probs=108.3

Q ss_pred             ccccccccccccCcccchhhHHhhhhhhhccc--Cc-e-------------------EEEEeeccccc---cCCCcEEEE
Q 048199          328 KQESDKNIIHREGYNAGLADFQSVLTTFTRYS--RL-R-------------------VIAELRHGDIF---HSANIVSSI  382 (495)
Q Consensus       328 ~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~--~~-~-------------------~~~~~~~~~~~---~h~~~V~~l  382 (495)
                      ..+....+.....+++++.|.++++|++....  .. .                   .++....++..   .+...  ..
T Consensus        47 ~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  124 (287)
T d1pgua2          47 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GS  124 (287)
T ss_dssp             SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EE
T ss_pred             CCEEEEEecCCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--ee
Confidence            33334444556677888899999999864321  00 0                   01111111111   11222  23


Q ss_pred             EEccCCCEEEEEeCC-CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce
Q 048199          383 EFDRDDQLFATAGVS-RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV  461 (495)
Q Consensus       383 ~~~p~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~  461 (495)
                      ++++++..++.++.| +.|++|++.....      .......+...+++++|+|+ +.+|++|+.||.|++||+.++...
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEV------SFDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEE------EEECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred             eeeccCcceeeeccccceeeeeeccccce------eeeeeeccCCceeEEEeccC-ccccccccccccccceeecccccc
Confidence            566778888877776 5799999876510      11122246678999999999 899999999999999999988765


Q ss_pred             e-ecccccCcEEEEEeecC---------CCCeEEEeeCCCcEeC
Q 048199          462 M-EYEEHEKRAWSVDFSRT---------EPSMLVSGSDDCKVLY  495 (495)
Q Consensus       462 ~-~~~~h~~~v~~v~~~~~---------~g~~l~s~s~D~~v~l  495 (495)
                      . .+.+|..+|.+++|+|.         ++.+|+|||.|++|+|
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence            4 57889999999999872         4568999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.4e-12  Score=122.33  Aligned_cols=151  Identities=9%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199          336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD  414 (495)
Q Consensus       336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~  414 (495)
                      .....+..|+.|+.+++|++.............     .+...+.+..+.+ ++..+++++.|+.+.+|++.........
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES-----GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEEC-----SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeec-----ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence            344557788889999999975433322222222     3445566666655 6789999999999999998765222111


Q ss_pred             cC--------CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          415 VH--------CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       415 ~~--------~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      ..        .......|...+++++|+|+ +.+|+||+.||+|+|||+.+++.+..+..+ ..+..++|++ +|.+|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~  309 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCL  309 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEE
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCC-ccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEE
Confidence            10        11112245567999999999 889999999999999999999999888643 2344577788 8899999


Q ss_pred             eeCCCcEe
Q 048199          487 GSDDCKVL  494 (495)
Q Consensus       487 ~s~D~~v~  494 (495)
                      ++.|++++
T Consensus       310 a~sdd~~~  317 (342)
T d1yfqa_         310 ATSDDTFK  317 (342)
T ss_dssp             EEECTHHH
T ss_pred             EEcCCcEE
Confidence            98887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.28  E-value=1.1e-11  Score=117.82  Aligned_cols=133  Identities=7%  Similarity=-0.002  Sum_probs=106.6

Q ss_pred             cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC--cEEEEEccccccCCCC
Q 048199          337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR--RIKVFDFASVVNEPAD  414 (495)
Q Consensus       337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~--~i~vwd~~~~~~~~~~  414 (495)
                      ++..++.++ +..+.+|+... .  . +..      ++|...|++++|+|||++|++++.+.  .|++||+.++      
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~-~--~-~~~------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~------   76 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSG-T--Y-VLK------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG------   76 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTS-S--B-EEE------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC------
T ss_pred             CCCEEEEEE-CCeEEEEECCC-C--c-EEE------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC------
Confidence            444454443 34788888742 1  1 111      16788999999999999998877664  7999999986      


Q ss_pred             cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                        .......|...+.+++|+|+ +.+|++++.++.+.+||+.++.....+..|...+.+++|+| +|.+|+.++.+
T Consensus        77 --~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~  148 (360)
T d1k32a3          77 --KAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPL  148 (360)
T ss_dssp             --CEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEE
T ss_pred             --cEEEeeCCCceEEeeeeccc-ccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccc
Confidence              34445578889999999999 99999999999999999999999999999999999999999 99999876543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.16  E-value=5.2e-11  Score=113.15  Aligned_cols=141  Identities=11%  Similarity=0.021  Sum_probs=104.7

Q ss_pred             cccccCcccchhh--HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199          335 IIHREGYNAGLAD--FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP  412 (495)
Q Consensus       335 ~~~~~~~~~g~~d--~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~  412 (495)
                      ..++..++.++.+  ..+.+|+... .   .+..+.     +|.+.|.+++|+|++++|++++.++.+++|++..+    
T Consensus        51 spDg~~l~~~~~~~g~~v~v~d~~~-~---~~~~~~-----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----  117 (360)
T d1k32a3          51 GGDTKVAFIHGTREGDFLGIYDYRT-G---KAEKFE-----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----  117 (360)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEETTT-C---CEEECC-----CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----
T ss_pred             CCCCCEEEEEEcCCCCEEEEEECCC-C---cEEEee-----CCCceEEeeeecccccccceecccccccccccccc----
Confidence            3444445444333  3678888742 1   122233     78999999999999999999999999999999886    


Q ss_pred             CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe----------cCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCC
Q 048199          413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS----------DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS  482 (495)
Q Consensus       413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg----------~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~  482 (495)
                         ........+...+.+++|+|+ +.+|+.+          ..++.+++||+.++...... .|...+..++|+| +|.
T Consensus       118 ---~~~~~~~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp-dg~  191 (360)
T d1k32a3         118 ---KPTVIERSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA-DSK  191 (360)
T ss_dssp             ---CEEEEEECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT-TSC
T ss_pred             ---ceeeeeecccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC-CCC
Confidence               222233356677889999999 8888743          44557999999977655444 4677888999999 999


Q ss_pred             eEEEeeCCCcEe
Q 048199          483 MLVSGSDDCKVL  494 (495)
Q Consensus       483 ~l~s~s~D~~v~  494 (495)
                      +|++++.|+.++
T Consensus       192 ~l~~~s~~~~~~  203 (360)
T d1k32a3         192 NLYYLSYRSLDP  203 (360)
T ss_dssp             EEEEEESCCCCC
T ss_pred             EEEEEeCCCceE
Confidence            999999988764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=5.4e-11  Score=117.30  Aligned_cols=137  Identities=15%  Similarity=0.038  Sum_probs=100.9

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      +++.++|+++.|||..   ..+.+..+..     | ..+..++|+|||+++++++.|++|++||+.++..      ..+.
T Consensus        35 ~v~~~d~g~v~v~D~~---t~~v~~~~~~-----g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~------~~~~   99 (432)
T d1qksa2          35 SVTLRDAGQIALIDGS---TYEIKTVLDT-----G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP------TTVA   99 (432)
T ss_dssp             EEEETTTTEEEEEETT---TCCEEEEEEC-----S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC------CEEE
T ss_pred             EEEEcCCCEEEEEECC---CCcEEEEEeC-----C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc------eEEE
Confidence            5788889999999984   3455666663     2 3589999999999999999999999999987611      1111


Q ss_pred             ec----CCCCCeEEEEEcCCCCCE-EEEecCCCcEEEEeCCCCcceeecccc-----------cCcEEEEEeecCCCCeE
Q 048199          421 EM----PTRSKLSCLSWNKFSKNR-IASSDYEGIVTVWDVTTQQSVMEYEEH-----------EKRAWSVDFSRTEPSML  484 (495)
Q Consensus       421 ~~----~~~~~i~~~~~~p~~~~~-l~sg~~dg~v~iwd~~~~~~~~~~~~h-----------~~~v~~v~~~~~~g~~l  484 (495)
                      .+    .+.+.+.+..|+|| |.+ ++++..+++|+|||..+++.+..+..|           ......+.+++ +|..+
T Consensus       100 ~i~~~~~~~~~~~s~~~SpD-G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~  177 (432)
T d1qksa2         100 EIKIGSEARSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEF  177 (432)
T ss_dssp             EEECCSEEEEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEE
T ss_pred             EEecCCCCCCeEEecccCCC-CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEE
Confidence            21    23344566678889 665 578889999999999999988777654           34566788898 66654


Q ss_pred             -EEeeCCCcEe
Q 048199          485 -VSGSDDCKVL  494 (495)
Q Consensus       485 -~s~s~D~~v~  494 (495)
                       ++.+.++.|.
T Consensus       178 ~vs~~~~~~i~  188 (432)
T d1qksa2         178 IVNVKETGKIL  188 (432)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEEccCCeEE
Confidence             5666667664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=2.4e-11  Score=119.62  Aligned_cols=122  Identities=12%  Similarity=0.016  Sum_probs=89.4

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      +++..+|++|.|||..   ....+..+..     | ..+.+++|+|||++|++++.|++|++||+.++..      ..+.
T Consensus        35 ~V~~~~dg~v~vwD~~---t~~~~~~l~~-----g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~------~~~~   99 (426)
T d1hzua2          35 SVTLRDAGQIALVDGD---SKKIVKVIDT-----G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP------TKVA   99 (426)
T ss_dssp             EEEETTTTEEEEEETT---TCSEEEEEEC-----C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC------EEEE
T ss_pred             EEEEcCCCEEEEEECC---CCcEEEEEeC-----C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce------eEEE
Confidence            4678889999999985   3455666763     3 3589999999999999999999999999998711      1111


Q ss_pred             ec----CCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199          421 EM----PTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       421 ~~----~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      .+    +|.+.+.+++|+|| |.++ +++..++++.+||..++..+..+.+|...+..+.|.+
T Consensus       100 ~i~~~~~~~~~~~s~~~spD-G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             EEeCCCCCcceEEeeeecCC-CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence            11    34445677788899 6665 5566899999999999988887776655444444443

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.8e-11  Score=89.28  Aligned_cols=45  Identities=27%  Similarity=0.581  Sum_probs=39.1

Q ss_pred             ccccccchhhhc------------------cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           54 LCPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        54 ~C~IC~~~~~~P------------------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      .|+||++.+.++                  +.++|||.||..||.+|+..+.+||+||+++..
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            499999888753                  346899999999999999999999999998754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=4.9e-11  Score=93.84  Aligned_cols=47  Identities=32%  Similarity=0.726  Sum_probs=38.6

Q ss_pred             ccccccccchhhhc------------------cccCCCCccchhhHHhhhcCC-----CCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNK-----SDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~P------------------v~l~CGH~FC~~Ci~~~~~~~-----~~CP~Cr~~~~~   98 (495)
                      +-.|+||++.|.++                  +.++|||.||..||..|+...     .+||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            44699999998754                  357899999999999999743     479999988754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.98  E-value=2.3e-09  Score=98.67  Aligned_cols=135  Identities=15%  Similarity=0.110  Sum_probs=100.9

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      ++++..|++|.+||..   ..+.+..+..      ...+..++|+|+|++| ++++.+++|++||+.++        ..+
T Consensus         5 yV~~~~~~~v~v~D~~---t~~~~~~i~~------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--------~~~   67 (301)
T d1l0qa2           5 YIANSESDNISVIDVT---SNKVTATIPV------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVI   67 (301)
T ss_dssp             EEEETTTTEEEEEETT---TTEEEEEEEC------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEE
T ss_pred             EEEECCCCEEEEEECC---CCeEEEEEEC------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--------cee
Confidence            3456777889999984   3355666653      2457899999999976 57778999999999986        344


Q ss_pred             eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCcEe
Q 048199          420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCKVL  494 (495)
Q Consensus       420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~v~  494 (495)
                      ..+.....+..+.|++++...++++..++.+.+||..+++.+..+..+ ..+..+.|+| ++..++ +++.|+.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~  141 (301)
T d1l0qa2          68 ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVS  141 (301)
T ss_dssp             EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             eeeeccccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeecccccee
Confidence            444455568899999995556677788889999999999888888755 4567899999 877765 444565543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.97  E-value=4.3e-10  Score=110.36  Aligned_cols=99  Identities=11%  Similarity=-0.060  Sum_probs=78.6

Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee----
Q 048199          387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM----  462 (495)
Q Consensus       387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~----  462 (495)
                      .+-++++++.|++|+|||+.++        ..+..+.....+..++|+|| |.+|++++.||+|++||+.+++...    
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~--------~~~~~l~~g~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEI  101 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC--------SEEEEEECCSSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCC--------cEEEEEeCCCCeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence            3336688889999999999987        44455555567999999999 9999999999999999999887533    


Q ss_pred             -ecccccCcEEEEEeecCCCCeEEEee-CCCcEeC
Q 048199          463 -EYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKVLY  495 (495)
Q Consensus       463 -~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~l  495 (495)
                       ...+|.+.+.+++|+| ||.+|++++ .++.|++
T Consensus       102 ~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2         102 KIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             ECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEE
T ss_pred             eCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEE
Confidence             3347888889999999 999875554 6777653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.93  E-value=2e-10  Score=78.52  Aligned_cols=49  Identities=22%  Similarity=0.474  Sum_probs=41.0

Q ss_pred             CCccccccccchhhhccccCC-----CCccchhhHHhhhcC--CCCCCCCCCcCcc
Q 048199           50 DKDMLCPICMQIIKEAFLTAC-----GHSFCYMCIITHLRN--KSDCPCCGHYLTN   98 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~C-----GH~FC~~Ci~~~~~~--~~~CP~Cr~~~~~   98 (495)
                      ++...|+||++.+.++.+.+|     +|.||..||.+|+..  ..+||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            456779999999998877765     599999999999964  4589999998864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.90  E-value=2.5e-09  Score=100.05  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=100.2

Q ss_pred             cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199          341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPV  419 (495)
Q Consensus       341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~  419 (495)
                      +++++.|.++.+||...   .+.+..+.-.   .+...+.+++|+|||+++ ++++.++.|.+||+.++        ..+
T Consensus         4 ~vt~~~d~~v~v~D~~s---~~~~~~i~~~---~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--------~~~   69 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEK---MAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--------ETL   69 (337)
T ss_dssp             EEEEETTTEEEEEETTT---TEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--------CEE
T ss_pred             EEEEcCCCEEEEEECCC---CeEEEEEECC---CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC--------cEE
Confidence            56678889999999853   3455555421   344567899999999976 56778999999999987        111


Q ss_pred             eecC------CCCCeEEEEEcCCCCCEEEEec------------CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199          420 VEMP------TRSKLSCLSWNKFSKNRIASSD------------YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP  481 (495)
Q Consensus       420 ~~~~------~~~~i~~~~~~p~~~~~l~sg~------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g  481 (495)
                      ....      +...+..++|+|+ +.+++++.            .++.+.+||..++..+..+.. ...+..++|+| +|
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg  146 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DG  146 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TS
T ss_pred             EEEecCCCcccccceeeEEEcCC-CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CC
Confidence            1111      1123457899999 77777765            467899999999988888874 45678899999 99


Q ss_pred             CeEEEeeCCCcE
Q 048199          482 SMLVSGSDDCKV  493 (495)
Q Consensus       482 ~~l~s~s~D~~v  493 (495)
                      .++++++.|..+
T Consensus       147 ~~l~~~~~~~~~  158 (337)
T d1pbyb_         147 SKLYGLGRDLHV  158 (337)
T ss_dssp             SCEEEESSSEEE
T ss_pred             CEEEEEcCCcce
Confidence            999998876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.2e-09  Score=102.28  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=98.5

Q ss_pred             cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEE-EeCCCcEEEEEccccccCCCCcCC
Q 048199          339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFAT-AGVSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ..++++.+|.+|.+|++........+..+      .|.+.|.+|+|+|||++|++ +..|+.|++|++.......    .
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~----~   74 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----T   74 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----E
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEE------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE----E
Confidence            34577888999999998543333434443      45688999999999998854 4558999999998751110    1


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEEeCCCCcce--eecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVWDVTTQQSV--MEYEEHEKRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd~~~~~~~--~~~~~h~~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ..........+..++|+|| +.+|++++. ++.|.+|+.......  .....+...+.++.|+| ++.+++.++.+
T Consensus        75 ~~~~~~~~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~  148 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK  148 (333)
T ss_dssp             EEEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred             EeeecccCCCceEEEEcCC-CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccc
Confidence            1222234455778999999 888877764 678999987765433  33345667788999999 88888877753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.87  E-value=1.6e-09  Score=106.51  Aligned_cols=101  Identities=11%  Similarity=-0.039  Sum_probs=80.3

Q ss_pred             ccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----
Q 048199          385 DRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----  460 (495)
Q Consensus       385 ~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----  460 (495)
                      +++.-++++.+.|++|.|||..++        ..+..+.....+..++|+|| |.++++++.||+|++||+.++..    
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~--------~v~~~~~~g~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~   99 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDTGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVA   99 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC--------CEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCC--------cEEEEEeCCCCeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEE
Confidence            334445689999999999999997        34444444456999999999 99999999999999999988763    


Q ss_pred             -eeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199          461 -VMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY  495 (495)
Q Consensus       461 -~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l  495 (495)
                       +....+|.+.+++..|+| ||++| ++++.|++|+|
T Consensus       100 ~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i  135 (432)
T d1qksa2         100 EIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVI  135 (432)
T ss_dssp             EEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEE
T ss_pred             EEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEE
Confidence             333456788888889999 99876 77888888864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.72  E-value=9.4e-09  Score=96.33  Aligned_cols=98  Identities=11%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee--ecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCC
Q 048199          382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV--EMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQ  458 (495)
Q Consensus       382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~  458 (495)
                      ++|++++++|++++.|++|.+||+.++        ..+.  .+.+...+.+++|+|| +.++ +++..++.|.+||+.++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--------~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--------CEEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccC
Confidence            468999999999999999999999986        3333  2345567889999999 6655 67778999999999999


Q ss_pred             cceeecccc------cCcEEEEEeecCCCCeEEEeeC
Q 048199          459 QSVMEYEEH------EKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       459 ~~~~~~~~h------~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      ..+..+...      ...+..++|+| ||.+++.++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~  108 (346)
T d1jmxb_          73 KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVN  108 (346)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEE
T ss_pred             eeeeeecccccccccCCceEEEEEec-CCCEEEEEec
Confidence            887766532      23467899999 9998887764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=2.8e-08  Score=92.63  Aligned_cols=92  Identities=9%  Similarity=0.010  Sum_probs=72.5

Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeec
Q 048199          389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEY  464 (495)
Q Consensus       389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~  464 (495)
                      ++|++++.|++|+|||+.+.        ..+..+   .+...+.+++|+|| +.++ ++++.++.|.+||+.+++.+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--------~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~   72 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC--------eEEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            58999999999999999986        222222   23345789999999 7765 67888999999999999988887


Q ss_pred             cccc-----CcEEEEEeecCCCCeEEEeeCC
Q 048199          465 EEHE-----KRAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       465 ~~h~-----~~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      ..+.     ..+..++|+| ++.++++++.+
T Consensus        73 ~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~  102 (337)
T d1pbyb_          73 DLSTPEERVKSLFGAALSP-DGKTLAIYESP  102 (337)
T ss_dssp             ECCBTTEEEECTTCEEECT-TSSEEEEEEEE
T ss_pred             ecCCCcccccceeeEEEcC-CCcEEEEeecC
Confidence            6553     3456789999 99999888754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=7.2e-08  Score=89.81  Aligned_cols=98  Identities=9%  Similarity=0.104  Sum_probs=71.8

Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeeccc--
Q 048199          390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEE--  466 (495)
Q Consensus       390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~--  466 (495)
                      .+++++.|++|++|++...     +.......+.+.+.+..++|+|| +.+| +++..|+.|++|++........+..  
T Consensus         6 v~v~~~~~~~I~v~~~~~~-----~~l~~~~~~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHE-----GALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTT-----SCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCC-----CCeEEEEEEcCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            4578889999999999864     11123344567788999999999 7777 5555689999999987654433333  


Q ss_pred             -ccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199          467 -HEKRAWSVDFSRTEPSMLVSGSD-DCKVL  494 (495)
Q Consensus       467 -h~~~v~~v~~~~~~g~~l~s~s~-D~~v~  494 (495)
                       +...+..++|+| ||++|++++. ++.|.
T Consensus        80 ~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~  108 (333)
T d1ri6a_          80 ALPGSLTHISTDH-QGQFVFVGSYNAGNVS  108 (333)
T ss_dssp             ECSSCCSEEEECT-TSSEEEEEETTTTEEE
T ss_pred             ccCCCceEEEEcC-CCCEEeecccCCCcee
Confidence             345577899999 9999998886 44543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.55  E-value=4.9e-07  Score=82.52  Aligned_cols=134  Identities=13%  Similarity=0.049  Sum_probs=92.2

Q ss_pred             ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC-CcEEEEEccccccCCCCcCCCee
Q 048199          342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS-RRIKVFDFASVVNEPADVHCPVV  420 (495)
Q Consensus       342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~  420 (495)
                      ..+..+..+.+|+...   ...+..+.      +...+..+.|+|++..+++++.+ +.+.+|+....        ....
T Consensus       132 ~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  194 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVT---KAVINTVS------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--------SVID  194 (301)
T ss_dssp             EEETTTTEEEEEETTT---TEEEEEEE------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------EEEE
T ss_pred             eeeccccceeeeeccc---cceeeecc------cCCCceEEEeeccccceeeecccccccccccccce--------eeee
Confidence            3444455566666532   22233332      34567899999999988777765 55667766654        2333


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEec---CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199          421 EMPTRSKLSCLSWNKFSKNRIASSD---YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY  495 (495)
Q Consensus       421 ~~~~~~~i~~~~~~p~~~~~l~sg~---~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l  495 (495)
                      .......+..+.|+++ +..++.+.   .+++|.+||..+++.+..+..+ ..+++++|+| ||.+| ++++.|++|++
T Consensus       195 ~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~sp-dg~~l~va~~~~~~i~v  270 (301)
T d1l0qa2         195 TVKVEAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTP-DGKKVYVALSFCNTVSV  270 (301)
T ss_dssp             EEECSSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             cccccCCcceeecccc-ccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeC-CCCEEEEEECCCCeEEE
Confidence            3345566789999999 66665443   4468999999999988887654 4679999999 99876 68888998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=7.7e-08  Score=95.06  Aligned_cols=132  Identities=8%  Similarity=0.021  Sum_probs=94.3

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC---------CCcEEEEEccccccCCCCcCC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV---------SRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      |+.+.+|+... .+  ....+....+..|...|.++.|+|||++|+.++.         ++.+.|||+.++        .
T Consensus        35 ~~~~~~~~~~t-~~--~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~--------~  103 (470)
T d2bgra1          35 ENNILVFNAEY-GN--SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--------Q  103 (470)
T ss_dssp             SSCEEEEETTT-CC--EEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--------E
T ss_pred             CCcEEEEECCC-CC--EEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC--------c
Confidence            44677888742 22  2233444455577889999999999999888753         567889999987        2


Q ss_pred             CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc------------------cCcEEEEEeecC
Q 048199          418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH------------------EKRAWSVDFSRT  479 (495)
Q Consensus       418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h------------------~~~v~~v~~~~~  479 (495)
                      ......+...+..+.|+|| |..||.. .++.+.+|+..++........+                  .+....+.|+| 
T Consensus       104 ~~~l~~~~~~~~~~~~SPD-G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-  180 (470)
T d2bgra1         104 LITEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-  180 (470)
T ss_dssp             ECCSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-
T ss_pred             ccccccCCccccccccccC-cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-
Confidence            2233356678999999999 8888875 4678999999988765443221                  22345678999 


Q ss_pred             CCCeEEEeeCCCc
Q 048199          480 EPSMLVSGSDDCK  492 (495)
Q Consensus       480 ~g~~l~s~s~D~~  492 (495)
                      ||.+|+....|.+
T Consensus       181 DGk~ia~~~~d~~  193 (470)
T d2bgra1         181 NGTFLAYAQFNDT  193 (470)
T ss_dssp             TSSEEEEEEEECT
T ss_pred             CCCccceeEecCC
Confidence            9999999886643

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-08  Score=75.13  Aligned_cols=44  Identities=18%  Similarity=0.474  Sum_probs=34.3

Q ss_pred             ccccccccchhhh---ccccCCCCccchhhHHhhhcCC--------CCCCCCCCc
Q 048199           52 DMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNK--------SDCPCCGHY   95 (495)
Q Consensus        52 ~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~--------~~CP~Cr~~   95 (495)
                      ...|+||++.+..   +..++|||.||+.||..|+...        .+||.|+-+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            4579999999853   4466899999999999998632        279986543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.35  E-value=4.5e-07  Score=84.43  Aligned_cols=85  Identities=9%  Similarity=0.051  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      .|...+..+.+++++.+++... ++.|.+||+.++        ..+....+...+++++|+|| +.+|++|+.||.|+||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--------~~~~~~~~~~~~~~va~s~D-G~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--------KLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT--------EEEEEEECSSCCCEEEECSS-SSCEEEESBSSEEEEE
T ss_pred             cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC--------cEEEEEcCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Confidence            5678889999999888877766 457999999886        33444445567899999999 8899999999999999


Q ss_pred             eCCCCcceeeccccc
Q 048199          454 DVTTQQSVMEYEEHE  468 (495)
Q Consensus       454 d~~~~~~~~~~~~h~  468 (495)
                      |+.+++.+.++.-..
T Consensus       319 D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ETTTTEEEEEEECSS
T ss_pred             ECccCCEEEEEECCC
Confidence            999999998887443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.07  E-value=1.2e-05  Score=75.70  Aligned_cols=80  Identities=6%  Similarity=-0.011  Sum_probs=65.6

Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC--EEEEecCCCcEEEEeCCCCcceeecccc
Q 048199          390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~sg~~dg~v~iwd~~~~~~~~~~~~h  467 (495)
                      .+++...++.+.+||+.++        ..+..+.+...+..++|+|| +.  ++++++.|++|+|||+.+++.+.++.++
T Consensus       290 ~~~~~~~~~~v~~~d~~t~--------~~~~~~~~~~~~~~~a~spD-G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVG--------QTSSQISLGHDVDAISVAQD-GGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             eEEeecCCCeEEEEECCCC--------cEEEEecCCCCeeEEEECCC-CCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            4455666788999999887        45556667778999999999 65  4578999999999999999999999988


Q ss_pred             cCcEEEEEeec
Q 048199          468 EKRAWSVDFSR  478 (495)
Q Consensus       468 ~~~v~~v~~~~  478 (495)
                      ......|++..
T Consensus       361 g~~P~~l~~~~  371 (373)
T d2madh_         361 GSGPQVLSVMN  371 (373)
T ss_pred             CCCCcEEEEec
Confidence            87788887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.02  E-value=1.2e-05  Score=75.64  Aligned_cols=105  Identities=12%  Similarity=-0.019  Sum_probs=75.0

Q ss_pred             cCCCcEEEEEEccCCCEEEEE-----eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---
Q 048199          374 HSANIVSSIEFDRDDQLFATA-----GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---  445 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~-----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---  445 (495)
                      .+.+++.+++|+|+|+.++..     +.++.|.+||..++        ..+..+.. +....+.|+|| |.+|+++.   
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~-~~~~~~a~SpD-G~~l~va~~~~   87 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNG-GFLPNPVAAHS-GSEFALASTSF   87 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--------CEEEEEeC-CCCccEEEcCC-CCEEEEEeecC
Confidence            467889999999999987654     23456889998886        23333321 22337999999 88887764   


Q ss_pred             -------CCCcEEEEeCCCCcceeecccccCcE-------EEEEeecCCCCeEEEeeC
Q 048199          446 -------YEGIVTVWDVTTQQSVMEYEEHEKRA-------WSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       446 -------~dg~v~iwd~~~~~~~~~~~~h~~~v-------~~v~~~~~~g~~l~s~s~  489 (495)
                             .++.|.+||..+++.+..+..+....       ..+.|++ ++..++....
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~  144 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQF  144 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEE
Confidence                   45789999999999988887665543       4467888 7776655543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.00  E-value=6e-06  Score=77.14  Aligned_cols=91  Identities=8%  Similarity=0.044  Sum_probs=67.7

Q ss_pred             EEEEEEccCCCEEEEEeCC----------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC--EEEEecC
Q 048199          379 VSSIEFDRDDQLFATAGVS----------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSDY  446 (495)
Q Consensus       379 V~~l~~~p~~~~l~s~s~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~sg~~  446 (495)
                      ...++++|++..++..+.+          ..|.+||..++        ..+..+.+...+.+++|+|| +.  +++++..
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~--------~~~~~~~~~~~~~~~a~spD-G~~~l~v~~~~  321 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEMGHEIDSINVSQD-EKPLLYALSTG  321 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEEEEEECEEEECCS-SSCEEEEEETT
T ss_pred             eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC--------cEEEEecCCCCEEEEEEcCC-CCeEEEEEECC
Confidence            3457889998877765543          36999999886        33344444456889999999 55  5678888


Q ss_pred             CCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199          447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      |++|.|||..+++.+.++.++......|.+..
T Consensus       322 d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             CCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            99999999999999999987765555555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=9.9e-06  Score=79.36  Aligned_cols=102  Identities=14%  Similarity=0.034  Sum_probs=75.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---------CCCcEE
Q 048199          381 SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---------YEGIVT  451 (495)
Q Consensus       381 ~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---------~dg~v~  451 (495)
                      ++.|.++++++..  .|+.|.+||+.++.....  ........+...|.++.|+|| +.+|+.++         .++.+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE--ECTTTTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE--EchhhhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEE
Confidence            5778898887764  478899999999721100  000011134467899999999 88888774         356789


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      |||+.++. +..+..|...+..+.|+| ||..||....
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SP-DG~~ia~~~~  131 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSP-VGHKLAYVWN  131 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECS-STTCEEEEET
T ss_pred             EEECCCCc-ccccccCCcccccccccc-CcceeeEeec
Confidence            99999776 566888999999999999 9999998764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=4.4e-05  Score=70.97  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC-cCCCee---ec-CCCCCeEEEEEcCCCCCEEEEecCC--
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD-VHCPVV---EM-PTRSKLSCLSWNKFSKNRIASSDYE--  447 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~---~~-~~~~~i~~~~~~p~~~~~l~sg~~d--  447 (495)
                      +...+....+.+++..++.++.++.+.+|++..+...... ......   .. ........++++++ +..++....+  
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d-~~~~~~~~~~~~  271 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA-LDRIYLLVDQRD  271 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT-TTEEEEEEEECC
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC-CCeEEEEeccCC
Confidence            4455666778888888899999999999999876111000 000000   00 01122345788998 6666654433  


Q ss_pred             --------CcEEEEeCCCCcceeecccccCcEEEEEeecCCCC--eEEEeeCCCcEeC
Q 048199          448 --------GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDCKVLY  495 (495)
Q Consensus       448 --------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~--~l~s~s~D~~v~l  495 (495)
                              ..|.+||..+++.+..+. +...+.+++|+| ||+  ++++++.|+.|+|
T Consensus       272 ~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v  327 (355)
T d2bbkh_         272 EWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYI  327 (355)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEE
T ss_pred             ceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEEEEEECCCCEEEE
Confidence                    369999999999888886 345688999999 887  4567778998864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=8.7e-05  Score=69.77  Aligned_cols=100  Identities=12%  Similarity=-0.017  Sum_probs=67.0

Q ss_pred             EEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCCCeeec--------CCCCCeEEEEEcCCCCCEEE
Q 048199          381 SIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHCPVVEM--------PTRSKLSCLSWNKFSKNRIA  442 (495)
Q Consensus       381 ~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~p~~~~~l~  442 (495)
                      .++|+|||+.|+.++          .|++|++||..++        .++..+        ........++|+|| +.+|+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--------~~~~~i~~p~~~~~~~g~~p~~~a~SpD-Gk~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVHIIGNCAS-SACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTTSEEECTT-SSCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--------cEeeeecCCccceecccCCccceEECCC-CCEEE
Confidence            588999999887654          4778999999886        111111        11122346899999 66666


Q ss_pred             Eec-CCCcEEEEeCCCCcceeecccccC-------cEEEEEeecCCCCeEEEeeCC
Q 048199          443 SSD-YEGIVTVWDVTTQQSVMEYEEHEK-------RAWSVDFSRTEPSMLVSGSDD  490 (495)
Q Consensus       443 sg~-~dg~v~iwd~~~~~~~~~~~~h~~-------~v~~v~~~~~~g~~l~s~s~D  490 (495)
                      .+. .++.|.+||+.+++.+..+..+..       ....+.+++ ||.+++....+
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-Dg~~~~~~~~~  194 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC-PASLAASDLAA  194 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCC-TTSCEEEECCS
T ss_pred             EEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcC-CCCEEEEEecC
Confidence            554 679999999999888777655432       223456666 66666555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.48  E-value=3.6e-05  Score=73.75  Aligned_cols=113  Identities=14%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             EEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCc---C-CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199          379 VSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADV---H-CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW  453 (495)
Q Consensus       379 V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~---~-~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw  453 (495)
                      ...+.++|||+++ +++..+.+|.|||+......+...   . .........-.....+|.++ +..+.|...|..|..|
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~-g~~yts~~~ds~v~kw  338 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR-GNAYTTLFIDSQVCKW  338 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS-SEEEEEETTTTEEEEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC-ceEEEcccccceEEEe
Confidence            4578999999976 567789999999998752211111   1 11111111223456789998 8888999999999999


Q ss_pred             eCCC------C---c-ce-----eecccccCcEEEEEeecCCCCeEEEe---eCCCcE
Q 048199          454 DVTT------Q---Q-SV-----MEYEEHEKRAWSVDFSRTEPSMLVSG---SDDCKV  493 (495)
Q Consensus       454 d~~~------~---~-~~-----~~~~~h~~~v~~v~~~~~~g~~l~s~---s~D~~v  493 (495)
                      ++..      +   . .+     ....||...+.+..|+| ||++|+|+   |.|+.+
T Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         339 NIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEESCCGGGSC
T ss_pred             ccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecCccccccCc
Confidence            9741      1   1 11     22258888888899999 99999999   556543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.34  E-value=0.00077  Score=61.30  Aligned_cols=105  Identities=11%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT  457 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~  457 (495)
                      .+.+++++|||+++++...+++|..||....         ..........+++++|+++ +.+++++..++.+.+|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---------~~~~~~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---------EEEEEcCCCCcceEEEcCC-CCeEEEecCCceEEEEEecc
Confidence            5889999999999999999999888886543         1122334567899999999 88999988888888888654


Q ss_pred             Ccc-eeecc--cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          458 QQS-VMEYE--EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       458 ~~~-~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ... ...+.  ......+.+.+.+ ++.++++.+.++.|
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i  136 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAI  136 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEE
T ss_pred             cccceeeccccCCccccceeEEcc-CCCEEeeccccccc
Confidence            321 11221  2345678999999 89888887776655

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.0021  Score=56.87  Aligned_cols=109  Identities=10%  Similarity=0.062  Sum_probs=78.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ....+|+++|+++++++...++.|..||.+...       ............+.+++.++ +.++++...++.|..++..
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-------QVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-------EEECCCSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTT
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccce-------eeeeeccccCCCccceeeee-eeeeeeecCCCEEEEEeCC
Confidence            455789999999999888888999999987641       11111233456789999998 8888888888899988865


Q ss_pred             CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       457 ~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ...........-....+|++.+ +|.++++-..+++|+
T Consensus       212 ~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~  248 (260)
T d1rwia_         212 STTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVV  248 (260)
T ss_dssp             CSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEE
T ss_pred             CCeEEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEE
Confidence            4332222122334578999999 888888877777765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=0.0041  Score=55.50  Aligned_cols=109  Identities=11%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC---CCCCeEEEEEcCCCCCEEEEecC-CCc
Q 048199          374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP---TRSKLSCLSWNKFSKNRIASSDY-EGI  449 (495)
Q Consensus       374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~sg~~-dg~  449 (495)
                      .+......++++++++++++....+.|++||....         .+..++   .......+++.++ ++++++-.. ++.
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---------~~~~~g~~g~~~~P~giavD~~-G~i~Vad~~~~~~  223 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------YLRQIGGEGITNYPIGVGINSN-GEILIADNHNNFN  223 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------EEEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCE
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecCCc---------eeeeecccccccCCcccccccC-CeEEEEECCCCcE
Confidence            35677889999999999999999999999997653         222332   3345789999999 788777654 457


Q ss_pred             EEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199          450 VTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY  495 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l  495 (495)
                      |.+||. +|+.+.++...  ....+.|++.+ +|.+++ ++.+.+|++
T Consensus       224 v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~  268 (279)
T d1q7fa_         224 LTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYI  268 (279)
T ss_dssp             EEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEE
T ss_pred             EEEECC-CCCEEEEEeCCCCCCCEeEEEEeC-CCcEEE-EeCCCeEEE
Confidence            999994 58877777543  23578999999 886555 557888764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.01  E-value=0.0022  Score=58.57  Aligned_cols=112  Identities=10%  Similarity=0.141  Sum_probs=77.6

Q ss_pred             EEEEEEccCCC-----EEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          379 VSSIEFDRDDQ-----LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       379 V~~l~~~p~~~-----~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      -..++|+|++.     ++++-+..+.|..||+..... +. .......+.  .....-.+++..+ ++++++....+.|.
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-~~-~~~~~~~~~~~~~~~pdGiavD~~-GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IE-NKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSSHIE  250 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-EE-EEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTTEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccc-cc-eeeEEEEccccccccceeeEEecC-CcEEEEEcCCCEEE
Confidence            45789998764     555667788899998765300 00 000011111  1234668999999 88888887889999


Q ss_pred             EEeCCCCcceeecccccCcEEEEEeecCCCC-eEEEeeCCCcEe
Q 048199          452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS-MLVSGSDDCKVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~-~l~s~s~D~~v~  494 (495)
                      +||...+..+..+......+.+++|.+ ++. ++++.+.++.|.
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~  293 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVW  293 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEE
Confidence            999988887777776667889999999 876 557777777764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.99  E-value=0.00059  Score=63.78  Aligned_cols=80  Identities=8%  Similarity=0.006  Sum_probs=57.5

Q ss_pred             EEEEEccCCCEEEEEeCC---------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCc
Q 048199          380 SSIEFDRDDQLFATAGVS---------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGI  449 (495)
Q Consensus       380 ~~l~~~p~~~~l~s~s~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~  449 (495)
                      ..++++|++..++....+         ..|.+||..++        ..+..+.....+.+++|+||+.. +++++..|++
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--------~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~  338 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------CEEECCEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--------cEeEEecCCCceeEEEECCCCCEEEEEEeCCCCe
Confidence            357788888765544322         24889999887        33333444456889999999334 4577888999


Q ss_pred             EEEEeCCCCcceeecccc
Q 048199          450 VTVWDVTTQQSVMEYEEH  467 (495)
Q Consensus       450 v~iwd~~~~~~~~~~~~h  467 (495)
                      |.|||..+++.+.++.-.
T Consensus       339 v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         339 LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEESSSCEEEEECCCC
T ss_pred             EEEEECCCCCEEEEEECC
Confidence            999999999999888743

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.78  E-value=0.0051  Score=57.30  Aligned_cols=109  Identities=9%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             CCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEE
Q 048199          376 ANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iw  453 (495)
                      ...+.++.|+|+|+++++++. ...|.+|++......  .................+.|+|+ +.++ ++.-.+++|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~--~~~~~~~~~~~g~gPr~i~f~pd-g~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce--eeccceeecCCCCceEEEEECCC-CceEEEeccCCCEEEEE
Confidence            345789999999998777754 457888876543000  00011122234567899999999 6655 566678899999


Q ss_pred             eCCCCcceeec-------------------ccccCcEEEEEeecCCCCeEEEee
Q 048199          454 DVTTQQSVMEY-------------------EEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       454 d~~~~~~~~~~-------------------~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      |+..+......                   ..+......+.++| +|.+|+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsn  273 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASS  273 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEc
Confidence            98764322111                   11223456789999 999987764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.0096  Score=52.32  Aligned_cols=110  Identities=10%  Similarity=0.139  Sum_probs=77.5

Q ss_pred             CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .....+++++++++++++-.....+..++.....       .............+++++++ +.++++...++.|..||.
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-------QTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-------CEECCCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECT
T ss_pred             eeecccccccccceeEeeccccccccccccccce-------eeeeeecccCCcceeeecCC-CCEeeecccccccccccc
Confidence            3567899999999988887777777777765541       11111122334578999998 888888888899999998


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL  494 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~  494 (495)
                      ............-...+.|++.+ +|+++++....+.|.
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~  206 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVV  206 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEE
T ss_pred             ccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEE
Confidence            75443333334455678999999 888888887777653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.69  E-value=0.0012  Score=63.01  Aligned_cols=108  Identities=10%  Similarity=0.034  Sum_probs=75.1

Q ss_pred             CCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC--EEEEecCCC---
Q 048199          375 SANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSDYEG---  448 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~sg~~dg---  448 (495)
                      |........+.|||++|+ +...+.+|.++|+.++..      ..+..+.....+..++|+|+ ++  +++.++.+.   
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~------~~ii~iP~g~gphgi~~spd-g~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT------DKITHIPNVQAIHGLRLQKV-PKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE------EEEEECTTCCCEEEEEECCS-SBCCEEEEEECSCEES
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE------eeEEecCCCCCccceEEecc-CCEEEEEeccCCcccc
Confidence            555666666789999775 556789999999998610      12234456678999999999 55  444444332   


Q ss_pred             --------------cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199          449 --------------IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC  491 (495)
Q Consensus       449 --------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~  491 (495)
                                    .+..+|..+.....++... +.+..++|+| +|.++++++.+.
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~sp-dGk~a~vt~~ns  197 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADY-TGKYATSTCYNS  197 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECS-SSSEEEEEESCT
T ss_pred             cCcccccccccccceEEeecCccceeeEEEecC-CCccceEECC-CCCEEEEEecCC
Confidence                          2355888877776666543 3467899999 999999888653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.44  E-value=0.015  Score=53.88  Aligned_cols=120  Identities=8%  Similarity=0.028  Sum_probs=71.2

Q ss_pred             CCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCC--Ce----------eecCCCCCeEEEEEcCCCCCEE
Q 048199          375 SANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHC--PV----------VEMPTRSKLSCLSWNKFSKNRI  441 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~--~~----------~~~~~~~~i~~~~~~p~~~~~l  441 (495)
                      .....+.+.|+|+++++. +.-.+.+|.+|+++...........  ++          ....+......+.++|+ +.+|
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd-G~~l  269 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-GKYM  269 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-SSEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCC-CCEE
Confidence            346788999999999775 4557899999999765111000000  00          00112223567899999 8887


Q ss_pred             EEecC------CCcEEEEeCCCCcceeec------ccccCcEEEEEeecCCCCeEEEe-eCCCcEeC
Q 048199          442 ASSDY------EGIVTVWDVTTQQSVMEY------EEHEKRAWSVDFSRTEPSMLVSG-SDDCKVLY  495 (495)
Q Consensus       442 ~sg~~------dg~v~iwd~~~~~~~~~~------~~h~~~v~~v~~~~~~g~~l~s~-s~D~~v~l  495 (495)
                      +++..      .+.|..|++.....+...      .......+.++|+|.+|.+|+.+ ..++.|.+
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             EEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            77632      223777777643222211      12234567899997567877655 45676653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.42  E-value=0.02  Score=51.34  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ..+.+.+++|+|+|+++++...++.+.+|+.......    ...+.........+.+.+.++ +.++++.+.++.+..+|
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT----VETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLID  140 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC----EEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEE
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc----eeeccccCCccccceeEEccC-CCEEeeccccccceeee
Confidence            3467899999999999999888888888887654110    122233344556899999999 88999988899999998


Q ss_pred             CCCCc
Q 048199          455 VTTQQ  459 (495)
Q Consensus       455 ~~~~~  459 (495)
                      ...+.
T Consensus       141 ~~~~~  145 (302)
T d2p4oa1         141 VVQPS  145 (302)
T ss_dssp             TTTTE
T ss_pred             ccCCc
Confidence            87653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0073  Score=58.28  Aligned_cols=130  Identities=10%  Similarity=-0.022  Sum_probs=75.8

Q ss_pred             hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe---------CCCcEEEEEccccccCCCCcCC
Q 048199          347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG---------VSRRIKVFDFASVVNEPADVHC  417 (495)
Q Consensus       347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~~  417 (495)
                      ++.+.+|+... .+...+....  .+  ..-.+.+..|+||+++++.+.         ..+.+.+||+.++..      .
T Consensus        36 ~g~i~~~~~~~-~~~~~l~~~~--~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~------~  104 (465)
T d1xfda1          36 KGTVRLWNVET-NTSTVLIEGK--KI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------Q  104 (465)
T ss_dssp             SSCEEEBCGGG-CCCEEEECTT--TT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------E
T ss_pred             CCcEEEEECCC-CCEEEEEcCc--cc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce------e
Confidence            44667777643 2222222222  11  233567888999999877653         356788899887610      0


Q ss_pred             Ceee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---------ccccCc---------EEEEEeec
Q 048199          418 PVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---------EEHEKR---------AWSVDFSR  478 (495)
Q Consensus       418 ~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---------~~h~~~---------v~~v~~~~  478 (495)
                      ++.. ......+....|+|| |..||-.. ++.|.+.+..++..++..         .|..++         -.++-|||
T Consensus       105 ~l~~~~~~~~~l~~~~wSPD-G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         105 SLDPPEVSNAKLQYAGWGPK-GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             ECCCTTCCSCCCSBCCBCSS-TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eccCccCCccccceeeeccC-CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            1111 112334566889999 66666554 567888887665443322         121211         14677999


Q ss_pred             CCCCeEEEeeCC
Q 048199          479 TEPSMLVSGSDD  490 (495)
Q Consensus       479 ~~g~~l~s~s~D  490 (495)
                       ||.+||....|
T Consensus       183 -Dgk~iaf~~~D  193 (465)
T d1xfda1         183 -DGTRLAYAAIN  193 (465)
T ss_dssp             -TSSEEEEEEEE
T ss_pred             -CCCeEEEEEec
Confidence             99999987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.12  E-value=0.017  Score=52.53  Aligned_cols=109  Identities=12%  Similarity=0.081  Sum_probs=73.0

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcC-CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          378 IVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVH-CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       378 ~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .-..|+|+|+++.| ++-+..+.|..|++........... ............-.+++..+ |+++++...++.|.+||-
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEEECC
Confidence            45679999999854 5667788999999875411100000 00111122234678999999 888888888999999995


Q ss_pred             CCCcceeecc------cccCcEEEEEeecCCCCeEEEeeC
Q 048199          456 TTQQSVMEYE------EHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       456 ~~~~~~~~~~------~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                       .|+.+..+.      ++...+++++|.+ +...++..+.
T Consensus       257 -~G~~l~~i~~P~~~~~~~~~~~~~~~~~-~~~~~~~t~~  294 (319)
T d2dg1a1         257 -RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSN  294 (319)
T ss_dssp             -TSCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEE
T ss_pred             -CCcEEEEEeCCCcCCCcCceeeeEEEeC-CCCEEEEEcC
Confidence             688777664      3445678999998 6666655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.95  E-value=0.054  Score=47.74  Aligned_cols=108  Identities=10%  Similarity=0.099  Sum_probs=79.9

Q ss_pred             CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee---cCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199          375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE---MPTRSKLSCLSWNKFSKNRIASSDYEGIVT  451 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~  451 (495)
                      .......+++++++.++++....+.+.+++....         .+..   ..+......+++.++ ++++++....+.|+
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~---------~~~~~g~~~~~~~~~~i~~d~~-g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVK  181 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCCc---------eeecccccccccccceeeeccc-eeEEeeecccccee
Confidence            3456788999999998888887788888876543         1222   234456889999998 88888999999999


Q ss_pred             EEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeCC-CcEe
Q 048199          452 VWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDD-CKVL  494 (495)
Q Consensus       452 iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D-~~v~  494 (495)
                      +||.. |..+.++.  ++.....+|++.+ +|+++++-+.+ +.|.
T Consensus       182 ~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~  225 (279)
T d1q7fa_         182 VFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLT  225 (279)
T ss_dssp             EEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEE
T ss_pred             eeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEE
Confidence            99964 77776663  3455678999999 88888776543 3453

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.08  Score=45.81  Aligned_cols=95  Identities=5%  Similarity=-0.031  Sum_probs=62.1

Q ss_pred             CCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-C--CCcE
Q 048199          375 SANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-Y--EGIV  450 (495)
Q Consensus       375 h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~--dg~v  450 (495)
                      +........|+|++..++..+. .+...+|.....       .................|+|| |..|+-.+ .  ...|
T Consensus       169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~p~~SPD-G~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-------TGGVQVLSSTFLDETPSLAPN-GTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-------TCCEEECCCSSSCEEEEECTT-SSEEEEEEEETTEEEE
T ss_pred             ccccccccccccccceeEEEeecCCceeeeEeecc-------cccceEeecCccccceEECCC-CCEEEEEEcCCCCcEE
Confidence            4556777889999998776554 445555555443       112233344556678899999 66665333 2  3368


Q ss_pred             EEEeCCCCcceeecccccCcEEEEEeec
Q 048199          451 TVWDVTTQQSVMEYEEHEKRAWSVDFSR  478 (495)
Q Consensus       451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~  478 (495)
                      .+||+..+. ...+....+.+...+|+|
T Consensus       241 ~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         241 NLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             EEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            899987554 455666677888899998

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.23  E-value=0.056  Score=47.00  Aligned_cols=95  Identities=7%  Similarity=-0.037  Sum_probs=60.2

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCCC-----cEEEEe
Q 048199          383 EFDRD--DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYEG-----IVTVWD  454 (495)
Q Consensus       383 ~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg-----~v~iwd  454 (495)
                      ..+|+  |+.++-.+ ++.|.++|+..+        .+.....+.+......|+|| |..|+-. ..++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g--------~~~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG--------STRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTC--------CEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCC--------CEEEEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEE
Confidence            35687  88877655 456777788876        33333345567888999999 7766643 2222     366777


Q ss_pred             CCCCcceeecc------cccCcEEEEEeecCCCCeEEEee
Q 048199          455 VTTQQSVMEYE------EHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       455 ~~~~~~~~~~~------~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      ..++.......      ..........|+| +|..|+...
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  113 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTD  113 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEEC
T ss_pred             ecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEE
Confidence            77665433211      1123456788999 998887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.77  E-value=0.33  Score=42.82  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             cEEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          378 IVSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       378 ~V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      .-..+.|+++++. +++-+..+.|..|+++............... ....+....+++..+ |++.++.-..+.|..||.
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCC-CCEEeeeeCCCceEEecC
Confidence            4568899998885 4566778889999886531111111111111 123445788999998 888887777788999995


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeE-EEee
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGS  488 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s  488 (495)
                       .|+.+..+.--...+++++|-..+.+.| +|..
T Consensus       228 -~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         228 -DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             -TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             -CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence             5888888865556799999973265555 4433

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0025  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.844  Sum_probs=29.3

Q ss_pred             ccccccccchhhhccccCC----CCccchhhHHhhhcC
Q 048199           52 DMLCPICMQIIKEAFLTAC----GHSFCYMCIITHLRN   85 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~C----GH~FC~~Ci~~~~~~   85 (495)
                      .|.|.+|.+.+.|-....|    +|-||..|-..+++.
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHh
Confidence            4889999999999876555    999999999988875

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.60  E-value=0.014  Score=39.87  Aligned_cols=47  Identities=26%  Similarity=0.663  Sum_probs=35.9

Q ss_pred             ccccccccchhh-----hcccc--CCCCccchhhHHhhh-cCCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIK-----EAFLT--ACGHSFCYMCIITHL-RNKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~-----~Pv~l--~CGH~FC~~Ci~~~~-~~~~~CP~Cr~~~~~   98 (495)
                      .-.|.||++..-     +|.+.  -|+-..|+.|.+--. ..+..||+|+.++..
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            357999999885     34433  699999999998543 345799999998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.47  E-value=0.3  Score=43.65  Aligned_cols=103  Identities=11%  Similarity=0.015  Sum_probs=67.1

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC----CcEEE
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE----GIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d----g~v~i  452 (495)
                      -.+..++|+++|+++++-...+.|..|+....       ...............++|+++ +.++++...+    +.|..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~-------~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCC-------eEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEE
Confidence            34578999999998888888899988888764       112222344556889999999 7777765432    33455


Q ss_pred             EeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEee
Q 048199          453 WDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       453 wd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      .|...+........  -...++.+++.+ +|.+.++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~  148 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDF  148 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEEC
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEe-ccceeeccc
Confidence            55444433222221  123577889999 888777643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.5  Score=40.32  Aligned_cols=105  Identities=11%  Similarity=-0.022  Sum_probs=57.8

Q ss_pred             CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE-ecCCCcEEEEe
Q 048199          377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS-SDYEGIVTVWD  454 (495)
Q Consensus       377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s-g~~dg~v~iwd  454 (495)
                      .......+++++. .+++...++...+|.......      ................|+|+ +..++. ...++...+|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~i~~  199 (269)
T d2hqsa1         127 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------APQRITWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAK  199 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------CCEECCCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEE
T ss_pred             ccccccccccccccceecccccCCceEeeeecccc------cceeeecccccccccccccc-cceeEEEeecCCceeeeE
Confidence            3444555666665 444555566555554433200      11122233445677899999 555554 44455555554


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD  489 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~  489 (495)
                      .........+..+........|+| ||+.|+-.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~p~~SP-DG~~i~f~s~  233 (269)
T d2hqsa1         200 QDLATGGVQVLSSTFLDETPSLAP-NGTMVIYSSS  233 (269)
T ss_dssp             EETTTCCEEECCCSSSCEEEEECT-TSSEEEEEEE
T ss_pred             eecccccceEeecCccccceEECC-CCCEEEEEEc
Confidence            433222223334555677889999 9998875553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=1.2  Score=38.18  Aligned_cols=103  Identities=7%  Similarity=0.046  Sum_probs=64.8

Q ss_pred             CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199          377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV  455 (495)
Q Consensus       377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~  455 (495)
                      ..+.+|+|++.++ ++.+-..++.|+..+++..       ............+.+++++.-++.+.++-...+.|.+.++
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~-------~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC-------CcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            4477899998655 4445566788888888765       1111111223467888887663555556667789999998


Q ss_pred             CCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      ........+...-..+..+++.|..|.++.+
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEecccccCCcEEEEecccCcEEEe
Confidence            7544322233333567889998845544444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.43  E-value=0.32  Score=43.40  Aligned_cols=71  Identities=20%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199          378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT  456 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~  456 (495)
                      ..-.++++.+|+++++....+.|.+||.+.+        .....+ .....+.+++|.|+...++++.+.+|.|..+|+.
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g--------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGG--------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCB--------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCC--------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4567999999999888888899999998765        222222 2335688999999833477788888988888875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.2  Score=47.74  Aligned_cols=97  Identities=7%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEe---------cCCCcEE
Q 048199          383 EFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASS---------DYEGIVT  451 (495)
Q Consensus       383 ~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg---------~~dg~v~  451 (495)
                      .|.+++.++.. ..++.|.+||+.++...      .+....  ..-.+....|+|| +.+++.+         +..+.+.
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~   94 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTST------VLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYV   94 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCE------EEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEE------EEEcCccccccccceeEECCC-CCeEEEEEcccceeEeeccccEE
Confidence            57777776543 45788999999887211      011110  1224667789999 7766554         3457789


Q ss_pred             EEeCCCCcceee--cccccCcEEEEEeecCCCCeEEEee
Q 048199          452 VWDVTTQQSVME--YEEHEKRAWSVDFSRTEPSMLVSGS  488 (495)
Q Consensus       452 iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~g~~l~s~s  488 (495)
                      +||+.++.....  .......+....|+| ||..||-..
T Consensus        95 i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~  132 (465)
T d1xfda1          95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF  132 (465)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE
T ss_pred             EEEccCCceeeccCccCCccccceeeecc-CCceEEEEe
Confidence            999988764332  223344566688999 998887655

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.087  Score=35.66  Aligned_cols=35  Identities=20%  Similarity=0.501  Sum_probs=28.5

Q ss_pred             cCCCCccccccccchhhhccccC---CCCccchhhHHhh
Q 048199           47 SELDKDMLCPICMQIIKEAFLTA---CGHSFCYMCIITH   82 (495)
Q Consensus        47 ~~~~~~l~C~IC~~~~~~Pv~l~---CGH~FC~~Ci~~~   82 (495)
                      +++..+..|+|| +.|+.-..+|   |+.+|.-.|+.+.
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            456677889999 8888766665   7999999999986

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.62  E-value=3.3  Score=35.92  Aligned_cols=108  Identities=6%  Similarity=-0.095  Sum_probs=65.4

Q ss_pred             CcEEEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199          377 NIVSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV  452 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i  452 (495)
                      ..+.++.++|+|++.++....    +.-.+|.+..+        ............+.+.|++++..++++.+..+.|..
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g--------~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--------KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--------EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeecCC--------cEEEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence            457899999999987765432    23456665544        111112223346889999994446677777889999


Q ss_pred             EeCCC--Cc------ceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          453 WDVTT--QQ------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       453 wd~~~--~~------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      |++..  +.      ....+.+-.+....+++.. +|++.++.-..+.|
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V  222 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAV  222 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEE
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCce
Confidence            98752  11      1112223345677788877 77766654444444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.14  E-value=0.45  Score=44.83  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC
Q 048199          377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF  436 (495)
Q Consensus       377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~  436 (495)
                      ..-++|+|.|++++|++--..|+|++++..++... ................+..++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45789999999999988866899999987765111 0010111111233467899999996

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=5  Score=34.12  Aligned_cols=110  Identities=9%  Similarity=-0.006  Sum_probs=64.4

Q ss_pred             CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEE
Q 048199          376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVW  453 (495)
Q Consensus       376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iw  453 (495)
                      ...+.+|++++. +++..+-...++|.+.+++..       ............+..++++|..+.++++.. ..+.|.-.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCc-------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence            345678999874 455556677789999999875       112222334456889999997455555532 23456666


Q ss_pred             eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                      ++. |.....+. ..-....++++.+.++.+..+-+..+.|
T Consensus       149 ~~d-Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I  188 (266)
T d1ijqa1         149 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (266)
T ss_dssp             ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccC-CCceecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence            654 44444433 2234567888877333334443444444

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=87.21  E-value=0.039  Score=36.30  Aligned_cols=42  Identities=29%  Similarity=0.574  Sum_probs=31.3

Q ss_pred             ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199           52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN   98 (495)
Q Consensus        52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~   98 (495)
                      ++.||.|...+. +.   =||.+|..|-..+. ....||.|++++..
T Consensus         2 ~~~CP~C~~eL~-~~---~~~~~C~~C~~~~~-~~a~CPdC~~~Le~   43 (71)
T d2jnea1           2 ELHCPQCQHVLD-QD---NGHARCRSCGEFIE-MKALCPDCHQPLQV   43 (71)
T ss_dssp             CCBCSSSCSBEE-EE---TTEEEETTTCCEEE-EEEECTTTCSBCEE
T ss_pred             CCcCCCccCccc-cc---CCCEehhhhhhhhe-eEEeCCccccHHHH
Confidence            478999998854 22   38899999977653 34579999998854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.73  E-value=8.2  Score=32.61  Aligned_cols=110  Identities=9%  Similarity=-0.014  Sum_probs=63.0

Q ss_pred             CCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE-
Q 048199          376 ANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW-  453 (495)
Q Consensus       376 ~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw-  453 (495)
                      ...+.+|+++.-+ ++..+-...+.|.+.+++..       ...+........+..++++|..+.++.+-...+..+|| 
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~-------~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCc-------eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            3568899998744 45556667889999998865       11122222335689999999855555554333343454 


Q ss_pred             -eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199          454 -DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV  493 (495)
Q Consensus       454 -d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v  493 (495)
                       ++. |.....+. ..-....++++.+.++.+..+-...+.|
T Consensus       151 ~~~d-G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         151 SHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             EETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ecCC-CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence             444 33333332 2234567888887333333444445554

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=0.073  Score=33.21  Aligned_cols=39  Identities=21%  Similarity=0.476  Sum_probs=23.9

Q ss_pred             ccccccchhhhc----cccCCCCccchhhHHhhhcCCCCCCCC
Q 048199           54 LCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCC   92 (495)
Q Consensus        54 ~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~~~CP~C   92 (495)
                      .|.+|...|.--    .--.||++||..|..........|..|
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~~~RvC~~C   44 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC   44 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCCCCCeECHhH
Confidence            377888777632    133699999999976543333456555

>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: FdhE-like
superfamily: FdhE-like
family: FdhE-like
domain: FdhE homolog PA4809
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.81  E-value=0.22  Score=43.70  Aligned_cols=46  Identities=20%  Similarity=0.477  Sum_probs=35.1

Q ss_pred             CCccccccccchhhhccccC----CC--CccchhhHHhhhcCCCCCCCCCCc
Q 048199           50 DKDMLCPICMQIIKEAFLTA----CG--HSFCYMCIITHLRNKSDCPCCGHY   95 (495)
Q Consensus        50 ~~~l~C~IC~~~~~~Pv~l~----CG--H~FC~~Ci~~~~~~~~~CP~Cr~~   95 (495)
                      ...-.||||+....--++..    =|  |.+|.-|-..|--...+||.|+..
T Consensus       162 ~~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~~C~~Cg~~  213 (290)
T d2fiya1         162 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES  213 (290)
T ss_dssp             TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred             ccCCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccccCCCCCCC
Confidence            34456999999877665532    34  678999999997777899999865

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.45  E-value=2.7  Score=38.84  Aligned_cols=100  Identities=19%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             cEEEEEEccCCCEEEE-EeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC------
Q 048199          378 IVSSIEFDRDDQLFAT-AGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY------  446 (495)
Q Consensus       378 ~V~~l~~~p~~~~l~s-~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~------  446 (495)
                      .+..+.++|++++++- -+.+    -.|+++|+.++        ..+...-.......+.|.+|+..++++.-.      
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg--------~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcc--------eecccccccccccceEEcCCCCEEEEEEeccccCcc
Confidence            3456678999998773 3333    35999999997        111111011122468899994444555321      


Q ss_pred             ---------CCcEEEEeCCCCcc--eeecccc--cCcEEEEEeecCCCCeEEE
Q 048199          447 ---------EGIVTVWDVTTQQS--VMEYEEH--EKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       447 ---------dg~v~iwd~~~~~~--~~~~~~h--~~~v~~v~~~~~~g~~l~s  486 (495)
                               ...|..|.+.+...  +..+...  ...+..+..+. ++.+++.
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEE
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeE
Confidence                     12577777776533  2333332  33466677787 8877653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.34  E-value=9.5  Score=32.19  Aligned_cols=108  Identities=11%  Similarity=0.023  Sum_probs=61.8

Q ss_pred             CCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199          376 ANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD  454 (495)
Q Consensus       376 ~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd  454 (495)
                      ...+.+|+|++..+.+. +-..++.|.-.+++.....  . ............+.++++.+.++++.++-...+.|.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~--~-~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC--c-ceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEe
Confidence            45577999998666544 5456677777776542000  0 001111122234567777766466666667778999999


Q ss_pred             CCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199          455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS  486 (495)
Q Consensus       455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s  486 (495)
                      +........+.........+++.|.+|.++.+
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             cCCceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence            87544444444445567888888745544444

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.22  Score=26.02  Aligned_cols=10  Identities=40%  Similarity=1.202  Sum_probs=5.0

Q ss_pred             CCCCCCCcCc
Q 048199           88 DCPCCGHYLT   97 (495)
Q Consensus        88 ~CP~Cr~~~~   97 (495)
                      .||+|.+.+.
T Consensus         5 ~cpic~qrfk   14 (32)
T d2epqa1           5 SCPVCGLRFK   14 (32)
T ss_dssp             EETTTTEECS
T ss_pred             ccchHHHHhh
Confidence            4555555443