Psyllid ID: psy10051

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSNKQQE
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccHHHHHHccccEEEEcHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccHHHHHHHHccEEEEEccHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mnpgrkfegtpfhpgndrYWSIVEKYKvnqfytapTAIRTLmkygegpvqkheveldsnkqqe
Flexible Loop (DISEMBL)
mnpgrkfegtpfhpgndrYWSIVEKYKVNQFYTAPTAIRTLMKYGegpvqkheveldsnkqqe
Low Complexity Region (SEG)
MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSNKQQE
Disordered region (IsUnstruct)
**************GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG******************
Disordered Region (DISOPRED)
MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD*N****
Disordered Region (DISEMBL)
MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH***********
Disordered Region (DISPRO)
*NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSNKQQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
Q9VP61	670	Acetyl-coenzyme A synthet	no	N/A	0.761	0.071	0.791	4e-18
Q9QXG4	701	Acetyl-coenzyme A synthet	yes	N/A	0.746	0.067	0.659	3e-12
B1ZB59	649	Acetyl-coenzyme A synthet	yes	N/A	0.714	0.069	0.644	3e-12
Q9NR19	701	Acetyl-coenzyme A synthet	no	N/A	0.746	0.067	0.659	3e-12
Q1AXQ5	644	Acetyl-coenzyme A synthet	yes	N/A	0.761	0.074	0.583	4e-12
B7KPN8	652	Acetyl-coenzyme A synthet	yes	N/A	0.714	0.069	0.644	5e-12
B1M0M1	648	Acetyl-coenzyme A synthet	yes	N/A	0.714	0.069	0.644	1e-11
A9W5V0	649	Acetyl-coenzyme A synthet	yes	N/A	0.714	0.069	0.622	1e-11
A4YK73	650	Acetyl-coenzyme A synthet	yes	N/A	0.777	0.075	0.591	2e-11
Q89WV5	648	Acetyl-coenzyme A synthet	yes	N/A	0.714	0.069	0.6	8e-11

>sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Activates acetate so that it can be used for lipid synthesis or for energy generation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHE 53
           FEG P +P   R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH 
Sbjct: 382 FEGIPTYPDEGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKHS 428

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B1ZB59|ACSA_METPB Acetyl-coenzyme A synthetase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=acsA PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQK 51
           FEG P +P N R+W +++K+KVN FYTAPTAIR+LM  GEGPV+K
Sbjct: 329 FEGIPTYPSNSRFWEVIDKHKVNIFYTAPTAIRSLMGGGEGPVKK 373

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) (taxid: 441620)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHE 53
           FEG P +P  +R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH 
Sbjct: 382 FEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHS 428

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q1AXQ5|ACSA_RUBXD Acetyl-coenzyme A synthetase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=acsA PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTP +P NDR+W I+E++ V   YTAPTAIR  MK G GP++KH++
Sbjct: 326 FEGTPSYPANDRWWDIIERHGVTILYTAPTAIRAFMKQGPGPIEKHDL 373

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) (taxid: 266117)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B7KPN8|ACSA_METC4 Acetyl-coenzyme A synthetase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=acsA PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQK 51
           FEG P +P N R+W +++K+KVN FYTAPTAIR+LM  GEGPV+K
Sbjct: 329 FEGIPTYPSNSRFWEVIDKHKVNIFYTAPTAIRSLMGGGEGPVKK 373

Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) (taxid: 440085)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|B1M0M1|ACSA_METRJ Acetyl-coenzyme A synthetase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=acsA PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQK 51
           FEG P +P   R+W +V+K+KVN FYTAPTAIR+LM  GEGPV+K
Sbjct: 329 FEGIPTYPSTSRFWEVVDKHKVNIFYTAPTAIRSLMGGGEGPVKK 373

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) (taxid: 426355)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A9W5V0|ACSA_METEP Acetyl-coenzyme A synthetase OS=Methylobacterium extorquens (strain PA1) GN=acsA PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQK 51
           FEG P +P N R+W +++K+ VN FYTAPTAIR+LM  GEGPV+K
Sbjct: 329 FEGIPTYPSNSRFWEVIDKHNVNIFYTAPTAIRSLMGGGEGPVKK 373

Methylobacterium extorquens (strain PA1) (taxid: 419610)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A4YK73|ACSA_BRASO Acetyl-coenzyme A synthetase OS=Bradyrhizobium sp. (strain ORS278) GN=acsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 38/49 (77%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVE 55
           FEG P +P N R+W++++K+KVN FYTAPTAIR LM+ G+GPV K   E
Sbjct: 327 FEGVPNYPDNSRFWNVIDKHKVNIFYTAPTAIRALMQGGDGPVTKTSRE 375

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q89WV5|ACSA_BRAJA Acetyl-coenzyme A synthetase OS=Bradyrhizobium japonicum (strain USDA 110) GN=acsA PE=1 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQK 51
           FEG P +P N R+W++++K+KVN FYTAPTAIR LM+ G+ PV+K
Sbjct: 327 FEGVPNYPDNSRFWNVIDKHKVNTFYTAPTAIRALMQGGDEPVKK 371

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
194749047	670	GF10175 [Drosophila ananassae] gi|190624	0.761	0.071	0.791	8e-17
195495647	595	GE22350 [Drosophila yakuba] gi|194181457	0.761	0.080	0.791	1e-16
608694	581	acetyl-CoA synthetase [Drosophila melano	0.761	0.082	0.791	1e-16
25012190	524	GM15363p [Drosophila melanogaster]	0.761	0.091	0.791	1e-16
194875428	670	GG13250 [Drosophila erecta] gi|190655379	0.761	0.071	0.791	1e-16
195592088	674	GD12130 [Drosophila simulans] gi|1941977	0.761	0.071	0.791	1e-16
24667959	524	acetyl coenzyme A synthase, isoform B [D	0.761	0.091	0.791	2e-16
34922289	670	RecName: Full=Acetyl-coenzyme A syntheta	0.761	0.071	0.791	2e-16
195441363	670	GK20397 [Drosophila willistoni] gi|19416	0.761	0.071	0.791	2e-16
24667955	670	acetyl coenzyme A synthase, isoform A [D	0.761	0.071	0.791	2e-16

>gi|194749047|ref|XP_001956951.1| GF10175 [Drosophila ananassae] gi|190624233|gb|EDV39757.1| GF10175 [Drosophila ananassae]

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF+PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFYPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195495647|ref|XP_002095356.1| GE22350 [Drosophila yakuba] gi|194181457|gb|EDW95068.1| GE22350 [Drosophila yakuba]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 276 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 323

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|608694|emb|CAA86738.1| acetyl-CoA synthetase [Drosophila melanogaster]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 262 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 309

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25012190|gb|AAN71211.1| GM15363p [Drosophila melanogaster]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 205 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 252

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194875428|ref|XP_001973596.1| GG13250 [Drosophila erecta] gi|190655379|gb|EDV52622.1| GG13250 [Drosophila erecta]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195592088|ref|XP_002085768.1| GD12130 [Drosophila simulans] gi|194197777|gb|EDX11353.1| GD12130 [Drosophila simulans]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 340 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 387

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667959|ref|NP_524196.2| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster] gi|23094224|gb|AAF51696.3| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 205 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 252

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|34922289|sp|Q9VP61.1|ACSA_DROME RecName: Full=Acetyl-coenzyme A synthetase; AltName: Full=Acetate--CoA ligase; AltName: Full=Acetyl-CoA synthetase; Short=ACS; Short=AceCS; AltName: Full=Acyl-activating enzyme gi|19528327|gb|AAL90278.1| LD12826p [Drosophila melanogaster]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441363|ref|XP_002068481.1| GK20397 [Drosophila willistoni] gi|194164566|gb|EDW79467.1| GK20397 [Drosophila willistoni]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667955|ref|NP_730611.1| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|442633865|ref|NP_001014599.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster] gi|23094223|gb|AAF51695.2| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|329112613|gb|AEB72010.1| FI04028p [Drosophila melanogaster] gi|440216111|gb|AAX52767.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct: 351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
FB|FBgn0012034	670	AcCoAS "Acetyl Coenzyme A synt	0.761	0.071	0.791	1.5e-17
UNIPROTKB|F1S4Y0	701	ACSS2 "Uncharacterized protein	0.730	0.065	0.695	1.8e-12
MGI|MGI:1890410	701	Acss2 "acyl-CoA synthetase sho	0.730	0.065	0.673	6.1e-12
RGD|1305489	701	Acss2 "acyl-CoA synthetase sho	0.730	0.065	0.673	6.1e-12
UNIPROTKB|E7EWU3	651	ACSS2 "Acetyl-coenzyme A synth	0.730	0.070	0.673	9e-12
UNIPROTKB|Q9NR19	701	ACSS2 "Acetyl-coenzyme A synth	0.730	0.065	0.673	1e-11
UNIPROTKB|Q5QPH3	714	ACSS2 "Acetyl-coenzyme A synth	0.730	0.064	0.673	1e-11
UNIPROTKB|A7YWF1	701	ACSS2 "Uncharacterized protein	0.730	0.065	0.673	1.3e-11
UNIPROTKB|F1NST1	612	ACSS2 "Uncharacterized protein	0.730	0.075	0.673	1.3e-11
UNIPROTKB|J9P7N4	701	ACSS2 "Uncharacterized protein	0.730	0.065	0.630	5.7e-11

FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
             FEGTPF PGNDRYWS+++KYKV QFYTAPTAIR LMK+GEGPV KH +
Sbjct:   351 FEGTPFFPGNDRYWSVIDKYKVTQFYTAPTAIRALMKFGEGPVLKHNL 398

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 32/46 (69%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P HP   R WS+V+KYKV +FYTAPTAIR LMK G+GPV KH
Sbjct:   382 FEGIPTHPDVSRLWSVVDKYKVTKFYTAPTAIRLLMKSGDGPVTKH 427

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P   R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   382 FEGIPTYPDEGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKH 427

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=ISO

GO:0019542 "propionate biosynthetic process" evidence=ISO

RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P   R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   382 FEGIPTYPDEGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKH 427

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA;ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0019413 "acetate biosynthetic process" evidence=IDA

GO:0019542 "propionate biosynthetic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E7EWU3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P  +R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   332 FEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKH 377

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P  +R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   382 FEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKH 427

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IC;IDA

GO:0016208 "AMP binding" evidence=IC

GO:0003987 "acetate-CoA ligase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006069 "ethanol oxidation" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P  +R WSIV+KYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   395 FEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKH 440

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=IEA

GO:0019542 "propionate biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P   R W+IVEKYKV +FYTAPTAIR LMK+G+ PV KH
Sbjct:   382 FEGIPTYPDVSRLWNIVEKYKVTKFYTAPTAIRLLMKFGDEPVTKH 427

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

UNIPROTKB|F1NST1 ACSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P   R WSI++KYKV +FYTAPTAIR LMK GE PV+KH
Sbjct:   293 FEGIPTYPDAGRMWSIIDKYKVTKFYTAPTAIRLLMKCGEEPVKKH 338

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query:     7 FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
             FEG P +P   R W+IV+KYKV +FYTAPTAIR LMK+G+ PV +H
Sbjct:   382 FEGIPTYPDVSRLWNIVDKYKVTKFYTAPTAIRLLMKFGDEPVTRH 427

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1M0M1	ACSA_METRJ	6, ., 2, ., 1, ., 1	0.6444	0.7142	0.0694	yes	N/A
O68040	ACSA_RHOCB	6, ., 2, ., 1, ., 1	0.5510	0.7777	0.0746	yes	N/A
A4WJG1	ACSA_PYRAR	6, ., 2, ., 1, ., 1	0.5208	0.7619	0.0716	yes	N/A
Q98ET8	ACSA_RHILO	6, ., 2, ., 1, ., 1	0.5555	0.7142	0.0691	yes	N/A
Q0VSR6	ACSA_ALCBS	6, ., 2, ., 1, ., 1	0.5777	0.7142	0.0697	yes	N/A
A9W5V0	ACSA_METEP	6, ., 2, ., 1, ., 1	0.6222	0.7142	0.0693	yes	N/A
Q6BQF2	ACS1_DEBHA	6, ., 2, ., 1, ., 1	0.5102	0.7777	0.0730	yes	N/A
Q056J9	ACSA_LEPBL	6, ., 2, ., 1, ., 1	0.5306	0.7777	0.0749	yes	N/A
Q2NXE2	ACSA_XANOM	6, ., 2, ., 1, ., 1	0.5333	0.7142	0.0695	yes	N/A
Q88DW6	ACSA2_PSEPK	6, ., 2, ., 1, ., 1	0.5454	0.6984	0.0683	yes	N/A
Q07VK4	ACSA_RHOP5	6, ., 2, ., 1, ., 1	0.5777	0.7142	0.0694	yes	N/A
A7HSR8	ACSA_PARL1	6, ., 2, ., 1, ., 1	0.5555	0.7142	0.0695	yes	N/A
B1ZB59	ACSA_METPB	6, ., 2, ., 1, ., 1	0.6444	0.7142	0.0693	yes	N/A
A4YK73	ACSA_BRASO	6, ., 2, ., 1, ., 1	0.5918	0.7777	0.0753	yes	N/A
Q8P3L1	ACSA_XANCP	6, ., 2, ., 1, ., 1	0.5555	0.7142	0.0695	yes	N/A
Q4UP35	ACSA_XANC8	6, ., 2, ., 1, ., 1	0.5555	0.7142	0.0695	yes	N/A
A7IFD4	ACSA_XANP2	6, ., 2, ., 1, ., 1	0.5777	0.7142	0.0691	yes	N/A
O93730	ACSA_PYRAE	6, ., 2, ., 1, ., 1	0.5416	0.7619	0.0716	yes	N/A
A0LG91	ACSA_SYNFM	6, ., 2, ., 1, ., 1	0.5909	0.6984	0.0676	yes	N/A
Q72J95	ACSA_THET2	6, ., 2, ., 1, ., 1	0.5714	0.7777	0.0756	yes	N/A
Q72LY9	ACSA_LEPIC	6, ., 2, ., 1, ., 1	0.5102	0.7777	0.0741	yes	N/A
Q1AXQ5	ACSA_RUBXD	6, ., 2, ., 1, ., 1	0.5833	0.7619	0.0745	yes	N/A
Q89WV5	ACSA_BRAJA	6, ., 2, ., 1, ., 1	0.6	0.7142	0.0694	yes	N/A
Q54Z60	ACSA_DICDI	6, ., 2, ., 1, ., 1	0.6315	0.6031	0.0563	yes	N/A
Q9QXG4	ACSA_MOUSE	6, ., 2, ., 1, ., 1	0.6595	0.7460	0.0670	yes	N/A
Q04P35	ACSA_LEPBJ	6, ., 2, ., 1, ., 1	0.5306	0.7777	0.0749	yes	N/A
B2IB12	ACSA_BEII9	6, ., 2, ., 1, ., 1	0.5777	0.7142	0.0697	yes	N/A
B8EPJ0	ACSA_METSB	6, ., 2, ., 1, ., 1	0.5909	0.6984	0.0682	yes	N/A
C1AA44	ACSA_GEMAT	6, ., 2, ., 1, ., 1	0.5208	0.7619	0.0733	yes	N/A
Q5SIW6	ACSA_THET8	6, ., 2, ., 1, ., 1	0.5714	0.7777	0.0756	yes	N/A
B7KPN8	ACSA_METC4	6, ., 2, ., 1, ., 1	0.6444	0.7142	0.0690	yes	N/A
Q27549	ACSA_CRYPV	6, ., 2, ., 1, ., 1	0.5106	0.7460	0.0677	yes	N/A
Q9HV66	ACSA2_PSEAE	6, ., 2, ., 1, ., 1	0.5333	0.7142	0.0697	yes	N/A
Q87C00	ACSA_XYLFT	6, ., 2, ., 1, ., 1	0.5555	0.7142	0.0695	yes	N/A
Q6G1W0	ACSA_BARHE	6, ., 2, ., 1, ., 1	0.6	0.7142	0.0690	yes	N/A
Q8PF09	ACSA_XANAC	6, ., 2, ., 1, ., 1	0.5333	0.7142	0.0695	yes	N/A
Q8EYG2	ACSA_LEPIN	6, ., 2, ., 1, ., 1	0.5102	0.7777	0.0741	yes	N/A
Q9PB89	ACSA_XYLFA	6, ., 2, ., 1, ., 1	0.5333	0.7142	0.0695	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-25
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	3e-23
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-23
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	4e-14
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-13
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-13
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-11
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-10
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-08
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-07
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	4e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	9e-06
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-05
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	5e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.001
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.004

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 95.7 bits (239), Expect = 3e-25
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           +EG P +P   R+W IVEKYKV  FYTAPTAIR LM++G+   +KH
Sbjct: 299 YEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKH 344

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 89.8 bits (224), Expect = 3e-23
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEG P +P   R+W +++K+KV  FYTAPTAIR LMK G+   +K+
Sbjct: 319 FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKY 364

Length = 637

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 89.2 bits (222), Expect = 6e-23
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEGTP +P   R+W I+EK+KV  FYTAPTAIR LM+ G+  V+KH
Sbjct: 310 FEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKH 355

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEG P +P + R W IV+KYKV  FYTAPT +R+LM+ G+  V +H
Sbjct: 349 FEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRH 394

Length = 666

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           +EG P  P    +W IVEKYKVN+ ++APTAIR L K     ++KH++
Sbjct: 307 YEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDL 354

Length = 629

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 60.7 bits (148), Expect = 6e-13
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           +EG P +P  DR W IVE++KV     +PT IR L  +G+ PV+ H
Sbjct: 173 YEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGH 218

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 60.4 bits (147), Expect = 7e-13
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
           ++G PF+   +R W  +EKYKV  F T+PT +R LMK G 
Sbjct: 245 YDGRPFYSP-ERLWEALEKYKVTIFGTSPTFLRRLMKLGL 283

Length = 528

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 55.7 bits (134), Expect = 4e-11
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
           +EG P +P    +WSIVE+Y V   ++APTAIR L K     ++KH++
Sbjct: 306 YEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDL 353

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.7 bits (130), Expect = 1e-10
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 17  DRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           +R++ I+E YKV  +YTAPTAIR LM  G+  V+K+
Sbjct: 285 ERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKY 320

Length = 570

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 7   FEGTP-FHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
           +EG P   P    YW ++E+Y VN  +TAPTAIR + K
Sbjct: 294 YEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRK 331

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 18  RYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVE 55
           R++ I+E+ KV  +YTAPTA+R LM+ G     ++++ 
Sbjct: 170 RWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLS 207

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           ++G+PF+P  +  W +  +  V  F T+   +    K G  P + H
Sbjct: 335 YDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETH 380

Length = 655

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           ++G+P +P  D  W +  K  +  F T+   +  L K G  P + H
Sbjct: 308 YDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTH 353

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 17  DRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEV 54
             +W IVE+Y++N     PT    L++    PV  H++
Sbjct: 298 ANFWKIVERYRINFLSGVPTVYAALLQV---PVDGHDI 332

Length = 632

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 17  DRYWSIVEKYKVNQFYTAPTAIRTLMKYGE 46
            R   ++EKYKV   Y  PT +R L+K  E
Sbjct: 211 ARLLDLIEKYKVTVLYGVPTLLRLLLKAPE 240

Length = 412

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 7   FEGTPFHPGN--DRYWSIVEKYKVNQFYTAPTAIRTLMKY 44
           FEG      +  D  W+ +EK+KV    T P  IR L+K 
Sbjct: 327 FEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT 366

Length = 647

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
           + G  F     R   ++E+Y V  F   PTA R L++
Sbjct: 154 YHGRRFDAE--RTLELLERYGVTTFCAPPTAYRMLLQ 188

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 11  PFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45
            F   N   + ++E+  V  F  +PTA R LM  G
Sbjct: 164 GFTAENT--YDVLERLGVTNFAGSPTAYRMLMAAG 196

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.4
PLN02654	666	acetate-CoA ligase	98.97
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.77
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	98.77
KOG1175|consensus	626		98.72
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	98.68
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.68
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	98.59
PLN03052	728	acetate--CoA ligase; Provisional	98.57
PRK00174	637	acetyl-CoA synthetase; Provisional	98.51
PTZ00237	647	acetyl-CoA synthetase; Provisional	98.47
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	98.4
KOG1176|consensus	537		98.39
KOG1177|consensus	596		98.3
PLN03051	499	acyl-activating enzyme; Provisional	98.2
PRK04319	570	acetyl-CoA synthetase; Provisional	97.92
PRK07868	994	acyl-CoA synthetase; Validated	97.89
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	97.83
PLN02574	560	4-coumarate--CoA ligase-like	97.78
PRK07788	549	acyl-CoA synthetase; Validated	97.76
PRK13382	537	acyl-CoA synthetase; Provisional	97.66
PRK13390	501	acyl-CoA synthetase; Provisional	97.66
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	97.63
PLN02860	563	o-succinylbenzoate-CoA ligase	97.63
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	97.62
PRK06188	524	acyl-CoA synthetase; Validated	97.62
PLN02246	537	4-coumarate--CoA ligase	97.61
PRK06839	496	acyl-CoA synthetase; Validated	97.61
PRK07470	528	acyl-CoA synthetase; Validated	97.55
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	97.52
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	97.52
PRK08316	523	acyl-CoA synthetase; Validated	97.5
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	97.47
PRK13391	511	acyl-CoA synthetase; Provisional	97.46
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	97.44
PRK06145	497	acyl-CoA synthetase; Validated	97.43
PRK09274	552	peptide synthase; Provisional	97.43
PLN03102	579	acyl-activating enzyme; Provisional	97.4
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.37
PRK05857	540	acyl-CoA synthetase; Validated	97.34
PLN02330	546	4-coumarate--CoA ligase-like 1	97.33
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	97.29
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	97.26
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	97.26
PRK07638	487	acyl-CoA synthetase; Validated	97.25
PRK05852	534	acyl-CoA synthetase; Validated	97.2
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	97.2
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	97.16
PRK06164	540	acyl-CoA synthetase; Validated	97.14
PLN02479	567	acetate-CoA ligase	97.14
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	97.11
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	97.09
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	97.08
PRK06178	567	acyl-CoA synthetase; Validated	97.08
PRK08315	559	AMP-binding domain protein; Validated	97.05
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	97.05
PRK12583	558	acyl-CoA synthetase; Provisional	97.04
PRK13383	516	acyl-CoA synthetase; Provisional	97.02
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	97.01
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	97.01
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	96.94
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	96.93
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	96.92
PLN02614	666	long-chain acyl-CoA synthetase	96.91
PRK07529	632	AMP-binding domain protein; Validated	96.9
PRK06018	542	putative acyl-CoA synthetase; Provisional	96.88
PRK07867	529	acyl-CoA synthetase; Validated	96.87
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	96.86
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	96.82
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	96.81
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	96.78
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	96.71
PLN02861	660	long-chain-fatty-acid-CoA ligase	96.69
PRK08162	545	acyl-CoA synthetase; Validated	96.66
PTZ00342	746	acyl-CoA synthetase; Provisional	96.63
PRK08308	414	acyl-CoA synthetase; Validated	96.62
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	96.6
PLN02736	651	long-chain acyl-CoA synthetase	96.59
PRK10946	536	entE enterobactin synthase subunit E; Provisional	96.59
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	96.49
PRK13388	540	acyl-CoA synthetase; Provisional	96.44
PRK09088	488	acyl-CoA synthetase; Validated	96.44
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	96.43
PRK07787	471	acyl-CoA synthetase; Validated	96.43
PRK08180	614	feruloyl-CoA synthase; Reviewed	96.41
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	96.41
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	96.41
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	96.4
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	96.38
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	96.09
PRK06060	705	acyl-CoA synthetase; Validated	96.07
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	96.04
PRK12316	5163	peptide synthase; Provisional	95.98
PRK12316	5163	peptide synthase; Provisional	95.93
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	95.93
PRK12467	3956	peptide synthase; Provisional	95.75
PRK12467	3956	peptide synthase; Provisional	95.66
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	95.6
PRK05691	4334	peptide synthase; Validated	95.49
PRK07514	504	malonyl-CoA synthase; Validated	95.45
PRK07798	533	acyl-CoA synthetase; Validated	95.39
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.14
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	95.1
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	94.93
PRK12582	624	acyl-CoA synthetase; Provisional	94.78
PLN02430	660	long-chain-fatty-acid-CoA ligase	94.57
KOG1179|consensus	649		94.47
PTZ00297	1452	pantothenate kinase; Provisional	94.28
PRK05691	4334	peptide synthase; Validated	93.29
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	92.77
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	92.73
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	91.92
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	91.51
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	91.31
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	87.42
PTZ00216	700	acyl-CoA synthetase; Provisional	86.87
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	86.83
PRK09192	579	acyl-CoA synthetase; Validated	86.68
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	86.39
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	84.33
KOG1256|consensus	691		82.74
PRK05850	578	acyl-CoA synthetase; Validated	81.85
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	81.02

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.40  E-value=7.1e-13  Score=85.46  Aligned_cols=55  Identities=35%  Similarity=0.559  Sum_probs=50.3

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +|+++|+|.|++ +++++|++|+++++|+|+++||.+|+|++.+.  .+.+|+|++++
T Consensus       240 at~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlssLr~  294 (528)
T COG0365         240 ATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSSLRV  294 (528)
T ss_pred             CeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchhhee
Confidence            688999999998 99999999999999999999999999999976  46789998765

>PLN02654 acetate-CoA ligase

Probab=98.97  E-value=1.9e-09  Score=70.64  Aligned_cols=58  Identities=43%  Similarity=0.696  Sum_probs=47.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +|+++++|.|.+++++++|++|++++||+++++|++++.|++.+......++++++++
T Consensus       344 ~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~  401 (666)
T PLN02654        344 ATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRV  401 (666)
T ss_pred             ceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeE
Confidence            5788999988888999999999999999999999999999987643234456666543

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=98.77  E-value=2.9e-08  Score=64.28  Aligned_cols=58  Identities=48%  Similarity=0.757  Sum_probs=46.6

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      ++++++++.|.+++++.+|++|+++++|+++++|++++.|++.+.......++++++.
T Consensus       305 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~  362 (625)
T TIGR02188       305 ATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRL  362 (625)
T ss_pred             CeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE
Confidence            5788999888878999999999999999999999999999987543223455655543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=98.77  E-value=2.9e-08  Score=64.51  Aligned_cols=58  Identities=36%  Similarity=0.597  Sum_probs=46.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +++++++|.|.++++..+|++|+++++|+++++|++++.|++.+......+++++++.
T Consensus       301 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~  358 (628)
T TIGR02316       301 AATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHW  358 (628)
T ss_pred             ceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE
Confidence            5788999888778999999999999999999999999999876532223456666543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>KOG1175|consensus

Probab=98.72  E-value=2.5e-08  Score=65.76  Aligned_cols=54  Identities=39%  Similarity=0.650  Sum_probs=44.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      +++++|+|.|+  ++.++|+++++++||+++++|+++|.+++.+......++++++
T Consensus       308 a~~vl~~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sL  361 (626)
T KOG1175|consen  308 ATVVLYEGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSL  361 (626)
T ss_pred             cEEEEEcCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceE
Confidence            68899999885  9999999999999999999999999998876543444554433

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=98.68  E-value=7.2e-08  Score=62.89  Aligned_cols=57  Identities=21%  Similarity=0.360  Sum_probs=45.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++++|.|.+++++.+|++|+++++|+++++|++++.+++.+..+...+++++++
T Consensus       330 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr  386 (655)
T PRK03584        330 ATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALR  386 (655)
T ss_pred             CEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheE
Confidence            578899988887899999999999999999999999999987643222335665554

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=98.68  E-value=6.4e-08  Score=63.38  Aligned_cols=58  Identities=21%  Similarity=0.349  Sum_probs=45.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +|+++++|.|.+++++.+|++|++++||+++++|++++.+++.+..+...+++++++.
T Consensus       331 ~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~  388 (652)
T TIGR01217       331 ATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC  388 (652)
T ss_pred             cEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeE
Confidence            5788999888777999999999999999999999999888765422223456766553

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=98.59  E-value=1.8e-07  Score=60.65  Aligned_cols=57  Identities=40%  Similarity=0.672  Sum_probs=45.2

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++++|.|.+++++.+|++|+++++|+++++|++++.|++.+......+++++++
T Consensus       302 ~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr  358 (629)
T PRK10524        302 MATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLR  358 (629)
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhhee
Confidence            467889988877899999999999999999999999999887643212345555544

>PLN03052 acetate--CoA ligase; Provisional

Probab=98.57  E-value=1.4e-07  Score=62.86  Aligned_cols=53  Identities=15%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +|+++|+|.   +++..+|+++++++||+++++|++++.|++.+.  ...+|+++++.
T Consensus       423 at~vl~~g~---p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~--~~~~dlssLr~  475 (728)
T PLN03052        423 ATLALYNGS---PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRC  475 (728)
T ss_pred             CEEEEeCCC---CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC--cccCChhheeE
Confidence            678999986   456789999999999999999999999988753  24567766553

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=98.51  E-value=4.2e-07  Score=59.11  Aligned_cols=57  Identities=42%  Similarity=0.688  Sum_probs=44.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++++|.|.+++++.+|++|+++++|+++++|++++.|++.........++++++
T Consensus       314 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr  370 (637)
T PRK00174        314 ATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLR  370 (637)
T ss_pred             CEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCcccee
Confidence            567888887777899999999999999999999999999987653212234555544

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=98.47  E-value=5.6e-07  Score=59.03  Aligned_cols=57  Identities=30%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             CceEeecCCCCCC--ChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCC---CccccCCccc
Q psy10051          2 NPGRKFEGTPFHP--GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGP---VQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~--d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~---~~~~dl~~l~   58 (63)
                      +++++++|.+..+  .++++|+.|++++||+++++|++++.|++.+...   ...+++++++
T Consensus       322 ~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr  383 (647)
T PTZ00237        322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLK  383 (647)
T ss_pred             cEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchhe
Confidence            5778888854332  2789999999999999999999999999754310   1345666654

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.40  E-value=5.1e-07  Score=57.64  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccccccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSNKQQ   62 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~~~~   62 (63)
                      +++|+-+.    ++|+..+.+|++|+||+...+|.....+++..+  .+..|+++|++.|-
T Consensus       258 G~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e--~~~~~LsSLrllQV  312 (542)
T COG1021         258 GTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAE--WERADLSSLRLLQV  312 (542)
T ss_pred             cEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhh--cccCCchheeEEee
Confidence            34555444    699999999999999999999999999998765  46789999999984

>KOG1176|consensus

Probab=98.39  E-value=8.6e-07  Score=57.85  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      |+++.+++.|++|+||+++++|+++.+|.+.+.  ...+++++++.
T Consensus       260 f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~--~~~~~l~sl~~  303 (537)
T KOG1176|consen  260 FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI--VKKYDLSSLRS  303 (537)
T ss_pred             CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc--cCcccCCccEE
Confidence            799999999999999999999999999999874  45688887654

>KOG1177|consensus

Probab=98.30  E-value=1.1e-06  Score=56.96  Aligned_cols=51  Identities=14%  Similarity=0.081  Sum_probs=40.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      +|+|+..  |. ||+...++.|+++++|.+++.|||+..|++.+.  ..+++++++
T Consensus       302 at~Vfp~--~~-f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~--~~~~~~s~l  352 (596)
T KOG1177|consen  302 ATIVFPA--PS-FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ--KQQVDLSSL  352 (596)
T ss_pred             cEEEeeC--CC-CChHHHHHHHHhhceEEEecChHHHHHHhcchh--hccCchhhh
Confidence            3444433  33 799999999999999999999999999998765  456777664

>PLN03051 acyl-activating enzyme; Provisional

Probab=98.20  E-value=4e-06  Score=53.28  Aligned_cols=54  Identities=11%  Similarity=0.108  Sum_probs=38.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      ++++++++.   ++++.+|+.|+++++|+++++|++++.|++.+.......++++++
T Consensus       186 ~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr  239 (499)
T PLN03051        186 ATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR  239 (499)
T ss_pred             CEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence            456666643   588999999999999999999999999887542001234555544

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=97.92  E-value=4.4e-05  Score=49.20  Aligned_cols=53  Identities=38%  Similarity=0.536  Sum_probs=38.6

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      +++++.++.   ++++.+++.|+++++|+++++|++++.|.+.+.......+++++
T Consensus       273 ~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l  325 (570)
T PRK04319        273 ATNVIDGGR---FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSL  325 (570)
T ss_pred             ceEEEECCC---CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccc
Confidence            345555442   79999999999999999999999999998764321223445444

>PRK07868 acyl-CoA synthetase; Validated

Probab=97.89  E-value=3.1e-05  Score=53.33  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=30.0

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +|++.+++.|++++||+++++|++++.|++.+
T Consensus       681 ~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~  712 (994)
T PRK07868        681 LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP  712 (994)
T ss_pred             CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence            79999999999999999999999999998764

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.83  E-value=6.7e-05  Score=47.40  Aligned_cols=53  Identities=17%  Similarity=0.185  Sum_probs=39.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      ++++.++    ++++.+++.++++++|.++++|+++..+++.+....+.+|++++++
T Consensus       214 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~  266 (502)
T PRK08276        214 TVVVMEK----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRV  266 (502)
T ss_pred             eEEEcCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceE
Confidence            4455544    7999999999999999999999999998876543223455655443

>PLN02574 4-coumarate--CoA ligase-like

Probab=97.78  E-value=6.2e-05  Score=48.46  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    ++++.+++.|+++++|.++++|++++.|.+.+
T Consensus       272 ~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  310 (560)
T PLN02574        272 TIVVMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKA  310 (560)
T ss_pred             EEEEecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCc
Confidence            4455544    79999999999999999999999999998764

>PRK07788 acyl-CoA synthetase; Validated

Probab=97.76  E-value=8.4e-05  Score=47.60  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+++.++++++|+++++|++++.+++...
T Consensus       282 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  314 (549)
T PRK07788        282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGP  314 (549)
T ss_pred             CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcc
Confidence            799999999999999999999999999887643

>PRK13382 acyl-CoA synthetase; Provisional

Probab=97.66  E-value=0.00014  Score=46.67  Aligned_cols=32  Identities=6%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      |+++.+|+.|+++++|.+.++|++++.|++..
T Consensus       271 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  302 (537)
T PRK13382        271 FDPEATLDLIDRHRATGLAVVPVMFDRIMDLP  302 (537)
T ss_pred             cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCC
Confidence            79999999999999999999999999988754

>PRK13390 acyl-CoA synthetase; Provisional

Probab=97.66  E-value=0.00013  Score=46.09  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    ++++.+|+.|+++++|++.++|+++..+++..
T Consensus       222 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  260 (501)
T PRK13390        222 TVVLAKR----FDAQATLGHVERYRITVTQMVPTMFVRLLKLD  260 (501)
T ss_pred             eEEEcCC----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence            4455544    69999999999999999999999998887653

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.63  E-value=0.00017  Score=46.61  Aligned_cols=42  Identities=26%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++|+.++.+  |+++.++..+.++++|+++++|+++..|++.+.
T Consensus       242 ~~v~~~~~~--f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~  283 (534)
T COG0318         242 TLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE  283 (534)
T ss_pred             EEEeCCCCC--cCHHHHHHHHHHhcceEEecchHHHHHHHhCCc
Confidence            455554322  799999999999999999999999999888765

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=97.63  E-value=0.00013  Score=47.07  Aligned_cols=39  Identities=10%  Similarity=0.097  Sum_probs=32.9

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+.    +++..+|+.|+++++|+++++|+++..|++..
T Consensus       240 ~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  278 (563)
T PLN02860        240 CHVLLPK----FDAKAALQAIKQHNVTSMITVPAMMADLISLT  278 (563)
T ss_pred             eEEecCC----CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhh
Confidence            4455543    79999999999999999999999999888654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=97.62  E-value=0.00017  Score=46.40  Aligned_cols=32  Identities=13%  Similarity=0.172  Sum_probs=29.7

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|+++++|++++.|++.+
T Consensus       260 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  291 (539)
T PRK06334        260 LYPKKIVEMIDEAKVTFLGSTPVFFDYILKTA  291 (539)
T ss_pred             CCHHHHHHHHHHhCCcEEEecHHHHHHHHHhh
Confidence            69999999999999999999999999988754

>PRK06188 acyl-CoA synthetase; Validated

Probab=97.62  E-value=0.00021  Score=45.43  Aligned_cols=41  Identities=12%  Similarity=0.157  Sum_probs=34.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      +++++.++    ++++.+++.++++++|+++++|++++.+++.+.
T Consensus       234 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  274 (524)
T PRK06188        234 GTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPD  274 (524)
T ss_pred             CEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcC
Confidence            34555554    699999999999999999999999999887654

>PLN02246 4-coumarate--CoA ligase

Probab=97.61  E-value=0.00019  Score=45.85  Aligned_cols=40  Identities=10%  Similarity=-0.008  Sum_probs=33.8

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.++    ++++.+|+.|+++++|++.++|+++..|.+..
T Consensus       251 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  290 (537)
T PLN02246        251 AAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSP  290 (537)
T ss_pred             CEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCc
Confidence            34555654    69999999999999999999999999888754

>PRK06839 acyl-CoA synthetase; Validated

Probab=97.61  E-value=0.00023  Score=44.77  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+++.++++++|.+.++|++++.+++...
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  257 (496)
T PRK06839        225 FEPTKALSMIEKHKVTVVMGVPTIHQALINCSK  257 (496)
T ss_pred             CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc
Confidence            799999999999999999999999999987643

>PRK07470 acyl-CoA synthetase; Validated

Probab=97.55  E-value=0.0003  Score=44.77  Aligned_cols=52  Identities=17%  Similarity=0.319  Sum_probs=37.9

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +.+++++..  ++++.+|+.|+++++|.+.++|++++.+.+.+.  ....++++++
T Consensus       232 ~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  283 (528)
T PRK07470        232 ATVLLPSER--FDPAEVWALVERHRVTNLFTVPTILKMLVEHPA--VDRYDHSSLR  283 (528)
T ss_pred             eEEEecccC--cCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC--cCCCCCcceE
Confidence            344554322  689999999999999999999999999887643  2334454443

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.52  E-value=0.00029  Score=45.39  Aligned_cols=40  Identities=13%  Similarity=0.063  Sum_probs=33.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.++    ++++.+|+.++++++|.+.++|++++.|++...
T Consensus       290 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~  329 (573)
T PRK05605        290 ELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAE  329 (573)
T ss_pred             EEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcc
Confidence            4455544    699999999999999999999999999887643

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=97.52  E-value=0.0003  Score=44.64  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      ++++.+++.++++++|.+.++|+++..+++.+......++++++
T Consensus       230 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l  273 (509)
T PRK12406        230 FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSL  273 (509)
T ss_pred             CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCce
Confidence            68999999999999999999999999888654321223444443

>PRK08316 acyl-CoA synthetase; Validated

Probab=97.50  E-value=0.0004  Score=43.88  Aligned_cols=41  Identities=15%  Similarity=0.370  Sum_probs=34.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++++++    ++++.+|+.++++++|.+.++|+++..+.+...
T Consensus       239 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  279 (523)
T PRK08316        239 ATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD  279 (523)
T ss_pred             ceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc
Confidence            34555554    699999999999999999999999998887643

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.47  E-value=0.00046  Score=44.29  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+|++++++++|.+.++|+++..+++...
T Consensus       254 ~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~  286 (539)
T PRK07008        254 LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMR  286 (539)
T ss_pred             cCHHHHHHHHHHcCCEEEEechHHHHHHHhccc
Confidence            699999999999999999999999998887643

>PRK13391 acyl-CoA synthetase; Provisional

Probab=97.46  E-value=0.00042  Score=44.02  Aligned_cols=40  Identities=20%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.+.    ++++.+++.++++++|++.++|++++.+.+..
T Consensus       226 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  265 (511)
T PRK13391        226 GTVIVMEH----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLP  265 (511)
T ss_pred             ceEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCc
Confidence            34555554    79999999999999999999999998887653

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.44  E-value=0.00034  Score=44.63  Aligned_cols=40  Identities=13%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++++++    +++..++++++++++|++.++|++++.+++.+
T Consensus       258 ~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~  297 (546)
T PRK08314        258 ATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASP  297 (546)
T ss_pred             CeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCC
Confidence            35566654    69999999999999999999999999888654

>PRK06145 acyl-CoA synthetase; Validated

Probab=97.43  E-value=0.00049  Score=43.43  Aligned_cols=33  Identities=9%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      +++..+++.++++++|.+.++|++++.+++...
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~  257 (497)
T PRK06145        225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPD  257 (497)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCC
Confidence            699999999999999999999999999887643

>PRK09274 peptide synthase; Provisional

Probab=97.43  E-value=0.00025  Score=45.46  Aligned_cols=44  Identities=18%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         13 HPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        13 ~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      .++++.+++.|+++++|+++++|++++.|.+...  ....++++++
T Consensus       248 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~lr  291 (552)
T PRK09274        248 TVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE--ANGIKLPSLR  291 (552)
T ss_pred             ccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh--hcCCCCchhh
Confidence            3689999999999999999999999999887543  1234555443

>PLN03102 acyl-activating enzyme; Provisional

Probab=97.40  E-value=0.00057  Score=44.41  Aligned_cols=40  Identities=15%  Similarity=0.176  Sum_probs=33.6

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++++++    ++++.+|+.|+++++|+++++|+++..|.+..
T Consensus       253 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  292 (579)
T PLN03102        253 GTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGN  292 (579)
T ss_pred             CcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCc
Confidence            34555554    68899999999999999999999999998754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.37  E-value=0.00061  Score=46.85  Aligned_cols=43  Identities=12%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      ++++.+++.++++++|++.++|++++.+.+.+.  ....++++++
T Consensus       859 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  901 (1146)
T PRK08633        859 TDALGIAKLVAKHRATILLGTPTFLRLYLRNKK--LHPLMFASLR  901 (1146)
T ss_pred             CCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc--cCcccCCCee
Confidence            699999999999999999999999998887543  2334555443

>PRK05857 acyl-CoA synthetase; Validated

Probab=97.34  E-value=0.00074  Score=43.39  Aligned_cols=32  Identities=16%  Similarity=0.139  Sum_probs=29.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..++++|+++++|+++++|++++.+.+..
T Consensus       247 ~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~  278 (540)
T PRK05857        247 ENTTSLLEILTTNAVATTCLVPTLLSKLVSEL  278 (540)
T ss_pred             CChhHHHHHHHhcCcceEEeChHHHHHHHhcc
Confidence            58899999999999999999999999888754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=97.33  E-value=0.00053  Score=44.00  Aligned_cols=39  Identities=13%  Similarity=-0.005  Sum_probs=32.9

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    +++..+|+.++++++|.+.++|++++.+++.+
T Consensus       255 ~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  293 (546)
T PLN02330        255 KVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNP  293 (546)
T ss_pred             EEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCc
Confidence            3444544    79999999999999999999999999988754

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=97.29  E-value=0.00075  Score=43.22  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|++.++|++++.+.+.+
T Consensus       273 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  304 (541)
T TIGR03205       273 FDVAAVFRDIEEKRATVFPGVPTMWIALANDP  304 (541)
T ss_pred             CCHHHHHHHHHHcCCeEeechHHHHHHHHhCc
Confidence            69999999999999999999999999887653

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.26  E-value=0.00078  Score=43.34  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|.+.++|++++.+++.+
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  315 (563)
T PRK06710        284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP  315 (563)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCC
Confidence            69999999999999999999999999888754

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.26  E-value=0.001  Score=41.88  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.++    ++++.+++.++++++|.++++|++++.|.+...
T Consensus       235 ~~v~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~  274 (521)
T PRK06187        235 KQVIPRR----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPR  274 (521)
T ss_pred             EEEecCC----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcC
Confidence            4445544    599999999999999999999999999887654

>PRK07638 acyl-CoA synthetase; Validated

Probab=97.25  E-value=0.00066  Score=42.86  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.++    ++++.+|+.|+++++|+++++|+++..|.+.
T Consensus       210 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  248 (487)
T PRK07638        210 QTVHLMRK----FIPNQVLDKLETENISVMYTVPTMLESLYKE  248 (487)
T ss_pred             cEEEEcCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence            34555544    7999999999999999999999999998875

>PRK05852 acyl-CoA synthetase; Validated

Probab=97.20  E-value=0.0013  Score=42.14  Aligned_cols=33  Identities=12%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      +++..+|+.|+++++|.++++|+++..+++...
T Consensus       254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  286 (534)
T PRK05852        254 FSAHTFWDDIKAVGATWYTAVPTIHQILLERAA  286 (534)
T ss_pred             cCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcc
Confidence            689999999999999999999999999987643

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=97.20  E-value=0.0012  Score=42.35  Aligned_cols=39  Identities=8%  Similarity=-0.088  Sum_probs=32.5

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+.    ++++.+++.++++++|.+.++|++++.+.+..
T Consensus       266 ~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~  304 (547)
T PRK13295        266 TAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAV  304 (547)
T ss_pred             eEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc
Confidence            4445443    69999999999999999999999998888654

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=97.16  E-value=0.0013  Score=41.77  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=33.5

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.++    ++++.+|+.|+++++|++.++|++++.++..+.
T Consensus       242 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  281 (517)
T PRK08008        242 TFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPP  281 (517)
T ss_pred             EEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCC
Confidence            4555554    799999999999999999999999998876543

>PRK06164 acyl-CoA synthetase; Validated

Probab=97.14  E-value=0.0013  Score=42.06  Aligned_cols=31  Identities=10%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..+++.|+++++|+++++|+++..+.+.
T Consensus       256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~  286 (540)
T PRK06164        256 FDAARTARALRRHRVTHTFGNDEMLRRILDT  286 (540)
T ss_pred             CCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence            6999999999999999999999999988876

>PLN02479 acetate-CoA ligase

Probab=97.14  E-value=0.0015  Score=42.24  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+|+.++++++|+++++|+++..|.+..
T Consensus       270 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~  301 (567)
T PLN02479        270 VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAP  301 (567)
T ss_pred             CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhh
Confidence            69999999999999999999999999888653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.11  E-value=0.0018  Score=40.85  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+++.|+++++|++.++|+++..+.+...
T Consensus       242 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  274 (513)
T PRK07656        242 FDPDEVFRLIETERITVLPGPPTMYNSLLQHPD  274 (513)
T ss_pred             CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC
Confidence            689999999999999999999999999987654

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=97.09  E-value=0.002  Score=41.20  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..+|+.++++++|+++++|+++..+.+..
T Consensus       260 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  291 (527)
T TIGR02275       260 PSPTDCFPLIERHKVTVTALVPPAVALWMQAA  291 (527)
T ss_pred             CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCc
Confidence            68999999999999999999999998887654

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=97.08  E-value=0.0019  Score=42.00  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..+|+.++++++|++.++|++++.+.+..
T Consensus       275 ~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~  306 (600)
T PRK08279        275 FSASRFWDDVRRYRATAFQYIGELCRYLLNQP  306 (600)
T ss_pred             CCHHHHHHHHHHhcceEEeehHHHHHHHHhCC
Confidence            79999999999999999999999999888754

>PRK06178 acyl-CoA synthetase; Validated

Probab=97.08  E-value=0.0022  Score=41.35  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.++    ++++.+|+.|+++++|.++++|+++..+++.+
T Consensus       278 ~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~  317 (567)
T PRK06178        278 ATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHP  317 (567)
T ss_pred             ceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCC
Confidence            34566654    79999999999999999999999998888754

>PRK08315 AMP-binding domain protein; Validated

Probab=97.05  E-value=0.0022  Score=41.07  Aligned_cols=32  Identities=16%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..+|+.++++++|.+.++|+++..++..+
T Consensus       276 ~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~  307 (559)
T PRK08315        276 FDPLATLAAVEEERCTALYGVPTMFIAELDHP  307 (559)
T ss_pred             CCHHHHHHHHHHcCCeEEecchHHHHHHHhCc
Confidence            69999999999999999999999998888754

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=97.05  E-value=0.0018  Score=40.89  Aligned_cols=39  Identities=10%  Similarity=-0.018  Sum_probs=33.2

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.++    ++++.+++.++++++|.+.++|+++..+.+.
T Consensus       228 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  266 (515)
T TIGR03098       228 ATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQL  266 (515)
T ss_pred             CEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence            35555554    6999999999999999999999999988865

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=97.04  E-value=0.0021  Score=41.12  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=28.9

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.++++++|+++++|+++..++...
T Consensus       278 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~  309 (558)
T PRK12583        278 FDPLATLQAVEEERCTALYGVPTMFIAELDHP  309 (558)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHccc
Confidence            68999999999999999999999998887654

>PRK13383 acyl-CoA synthetase; Provisional

Probab=97.02  E-value=0.0024  Score=40.76  Aligned_cols=32  Identities=6%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+|+.++++++|.+.++|++++.+.+..
T Consensus       251 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  282 (516)
T PRK13383        251 FDAEAALAQASLHRADAFTAVPVVLARILELP  282 (516)
T ss_pred             CCHHHHHHHHHHhCCcEEEecHHHHHHHHhcc
Confidence            79999999999999999999999999888654

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=97.01  E-value=0.0016  Score=40.90  Aligned_cols=39  Identities=10%  Similarity=0.039  Sum_probs=33.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++++++    +++..+++.++++++|++.++|+++..|.+.
T Consensus       208 ~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~  246 (483)
T PRK03640        208 MRVVLVEK----FDAEKINKLLQTGGVTIISVVSTMLQRLLER  246 (483)
T ss_pred             CEEEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhC
Confidence            45666665    6999999999999999999999999988754

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=97.01  E-value=0.0025  Score=41.11  Aligned_cols=40  Identities=10%  Similarity=0.093  Sum_probs=33.2

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+.    ++++.+|+.|+++++|.+.++|+++..|.+.+.
T Consensus       248 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~  287 (542)
T PRK06155        248 TYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPA  287 (542)
T ss_pred             eEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcC
Confidence            4445443    689999999999999999999999998887643

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=96.94  E-value=0.00082  Score=41.44  Aligned_cols=42  Identities=10%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.++.+. ++++.+++.|+++++|+++++|+++..+++.
T Consensus       223 ~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~  264 (417)
T PF00501_consen  223 ATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQS  264 (417)
T ss_dssp             SEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHH
T ss_pred             ccccccccccc-cccccchhccccccccccccccccccccccc
Confidence            45666665321 2357789999999999999999999999874

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=96.93  E-value=0.003  Score=40.51  Aligned_cols=31  Identities=10%  Similarity=0.029  Sum_probs=28.4

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+++.++++++|++.++|+++..+...
T Consensus       271 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~  301 (538)
T TIGR03208       271 WNPARAAELIRETGVTFTMASTPFLTDLCRA  301 (538)
T ss_pred             cCHHHHHHHHHHhCCeEEecCHHHHHHHHhc
Confidence            7999999999999999999999999877754

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=96.92  E-value=0.0029  Score=40.87  Aligned_cols=32  Identities=16%  Similarity=0.068  Sum_probs=29.1

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|.++++|+++..+.+..
T Consensus       287 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  318 (562)
T PRK05677        287 RDLPAMVKELGKWKFSGFVGLNTLFVALCNNE  318 (562)
T ss_pred             ccHHHHHHHHHHcCceEEecHHHHHHHHHhCc
Confidence            58999999999999999999999999888654

>PLN02614 long-chain acyl-CoA synthetase

Probab=96.91  E-value=0.0023  Score=42.57  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=27.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++++.+++.|+++++|+++++|+++..+.+
T Consensus       302 ~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~  331 (666)
T PLN02614        302 GDVKLLIEDLGELKPTIFCAVPRVLDRVYS  331 (666)
T ss_pred             CCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence            489999999999999999999999987764

>PRK07529 AMP-binding domain protein; Validated

Probab=96.90  E-value=0.0042  Score=40.92  Aligned_cols=40  Identities=25%  Similarity=0.525  Sum_probs=31.7

Q ss_pred             hhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         16 NDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        16 ~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      .+.+|++++++++|.+.++|+++..|++.+.   ...++++++
T Consensus       297 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~~slr  336 (632)
T PRK07529        297 IANFWKIVERYRINFLSGVPTVYAALLQVPV---DGHDISSLR  336 (632)
T ss_pred             HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---cCCCccceE
Confidence            3689999999999999999999999987653   234555544

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=96.88  E-value=0.0026  Score=40.88  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+|+.++++++|.++++|++++.+.+..
T Consensus       255 ~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~  286 (542)
T PRK06018        255 LDGASVYELLDTEKVTFTAGVPTVWLMLLQYM  286 (542)
T ss_pred             CCHHHHHHHHHhcCCceeecCcHHHHHHHhcc
Confidence            68999999999999999999999999887654

>PRK07867 acyl-CoA synthetase; Validated

Probab=96.87  E-value=0.004  Score=40.10  Aligned_cols=40  Identities=8%  Similarity=-0.027  Sum_probs=33.1

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.++    ++++.+++.++++++|++.++|+.++.+++.+.
T Consensus       221 ~~~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~  260 (529)
T PRK07867        221 SIALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPE  260 (529)
T ss_pred             eEEecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence            3445544    799999999999999999999999998887643

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=96.86  E-value=0.0039  Score=40.29  Aligned_cols=43  Identities=9%  Similarity=0.074  Sum_probs=34.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++..+++.|+++++|++.++|+++..+++.+.  ....++++++
T Consensus       294 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr  336 (562)
T PRK12492        294 RDIPGFIKELGKWRFSALLGLNTLFVALMDHPG--FKDLDFSALK  336 (562)
T ss_pred             cCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC--ccccccccee
Confidence            589999999999999999999999998887653  2334555443

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=96.82  E-value=0.0012  Score=38.79  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=21.2

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcce
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVN   29 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT   29 (63)
                      +|+|++++    ||++++|+.|++++||
T Consensus       204 ~t~v~~~r----Fd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       204 GSLVLVTH----PDPARLDQIAETERVT  227 (227)
T ss_pred             ceEEEecC----CCHHHHHHHHHhhcCC
Confidence            57788865    8999999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=96.81  E-value=0.0034  Score=40.38  Aligned_cols=42  Identities=10%  Similarity=0.064  Sum_probs=33.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      +++..+++.|+++++|++.++|+++..+.+.+.  ....+++++
T Consensus       290 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~l~~l  331 (560)
T PRK08751        290 RDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--FDQIDFSSL  331 (560)
T ss_pred             CCHHHHHHHHHhcceeEecChHHHHHHHHcCcC--cCCcchhhh
Confidence            588999999999999999999999998887643  233455443

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=96.78  E-value=0.0051  Score=39.07  Aligned_cols=40  Identities=15%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++++.   +++..+|+.|+++++|.+.++|+++..+++..
T Consensus       231 ~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~  270 (508)
T TIGR02262       231 TTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP  270 (508)
T ss_pred             eEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCc
Confidence            34555542   58999999999999999999999998777643

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=96.71  E-value=0.0062  Score=39.15  Aligned_cols=41  Identities=12%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++++...  ++++.+|+.|+++++|.++++|+++..+....
T Consensus       243 ~~v~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  283 (542)
T PRK07786        243 PTVIYPLGA--FDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQ  283 (542)
T ss_pred             EEEEccCCC--cCHHHHHHHHHHcCCeEEEehHHHHHHHHhCc
Confidence            445544212  69999999999999999999999999888653

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=96.69  E-value=0.0042  Score=41.25  Aligned_cols=30  Identities=13%  Similarity=0.093  Sum_probs=27.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++++.+++.|+++++|+++++|+++..|.+
T Consensus       299 ~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~  328 (660)
T PLN02861        299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYT  328 (660)
T ss_pred             CCHHHHHHHHHHhCCcEEeechHHHHHHHH
Confidence            489999999999999999999999987764

>PRK08162 acyl-CoA synthetase; Validated

Probab=96.66  E-value=0.0071  Score=38.74  Aligned_cols=33  Identities=12%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+++.++++++|++.++|++++.|.+.+.
T Consensus       257 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~  289 (545)
T PRK08162        257 VDPKLIFDLIREHGVTHYCGAPIVLSALINAPA  289 (545)
T ss_pred             CCHHHHHHHHHHcCCeEEEechHHHHHHHhCcc
Confidence            699999999999999999999999999887643

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=96.63  E-value=0.0044  Score=42.10  Aligned_cols=29  Identities=10%  Similarity=0.086  Sum_probs=27.1

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..+++.|+++++|+++++|+++..|.+
T Consensus       381 ~~~~l~~di~~~~pT~~~~VP~v~~~i~~  409 (746)
T PTZ00342        381 DINYFSKDIYNSKGNILAGVPKVFNRIYT  409 (746)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHH
Confidence            88999999999999999999999988865

>PRK08308 acyl-CoA synthetase; Validated

Probab=96.62  E-value=0.0064  Score=37.86  Aligned_cols=39  Identities=10%  Similarity=0.081  Sum_probs=32.9

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    ++++.+++.++++++|.++++|+++..+.+..
T Consensus       170 ~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~  208 (414)
T PRK08308        170 KPVIITN----KNPKFALNILRNTPQHILYAVPLMLHILGRLL  208 (414)
T ss_pred             EEEecCC----CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcC
Confidence            4555554    68999999999999999999999999887653

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=96.60  E-value=0.0077  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      .++..+|+.++++++|.+.++|++++.++....
T Consensus       288 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~  320 (557)
T PRK07059        288 RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD  320 (557)
T ss_pred             cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC
Confidence            488999999999999999999999998887643

>PLN02736 long-chain acyl-CoA synthetase

Probab=96.59  E-value=0.0049  Score=40.68  Aligned_cols=29  Identities=10%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..+++.|+++++|+++++|+++..+.+
T Consensus       296 ~~~~~~~~i~~~~~t~~~~vP~~~~~l~~  324 (651)
T PLN02736        296 DNLKLMDDLAALRPTIFCSVPRLYNRIYD  324 (651)
T ss_pred             CHHHHHHHHHHhCCcEEecchHHHHHHHH
Confidence            78899999999999999999999987764

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=96.59  E-value=0.0077  Score=38.71  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..++++++++++|++.++|++++.+.+.
T Consensus       259 ~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~  289 (536)
T PRK10946        259 PSATLCFPLIEKHQVNVTALVPPAVSLWLQA  289 (536)
T ss_pred             CCHHHHHHHHHHhCCcEEEeChHHHHHHHhh
Confidence            6899999999999999999999999888764

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=96.49  E-value=0.0078  Score=40.22  Aligned_cols=40  Identities=8%  Similarity=0.070  Sum_probs=31.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++++++ +  +++..+++.++++++|+++++|+++..+.+.
T Consensus       433 ~~vv~~~~-~--~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~  472 (718)
T PRK08043        433 AEVFLYPS-P--LHYRIVPELVYDRNCTVLFGTSTFLGNYARF  472 (718)
T ss_pred             CEEEEeCC-c--ccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence            45566654 2  4778899999999999999999999877654

>PRK13388 acyl-CoA synthetase; Provisional

Probab=96.44  E-value=0.011  Score=38.08  Aligned_cols=32  Identities=9%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..+|+.|+++++|++..+|+++..+++.+
T Consensus       226 ~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~  257 (540)
T PRK13388        226 FSASGFLDDVRRYGATYFNYVGKPLAYILATP  257 (540)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCC
Confidence            68999999999999999999999999888654

>PRK09088 acyl-CoA synthetase; Validated

Probab=96.44  E-value=0.011  Score=37.39  Aligned_cols=39  Identities=8%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             ceEeecCCCCCCChhHHHHHHh--hhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVE--KYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~--~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    +++...+..+.  ++++|.++++|+++..+.+.+
T Consensus       204 ~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~  244 (488)
T PRK09088        204 SILVSNG----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP  244 (488)
T ss_pred             EEEEcCC----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCc
Confidence            4445544    68899999886  489999999999999888654

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=96.43  E-value=0.0072  Score=38.18  Aligned_cols=42  Identities=7%  Similarity=0.050  Sum_probs=32.8

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++++++.. ..++..+|+.+.++++|.+.++|+++..++..
T Consensus       208 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~  249 (502)
T TIGR01734       208 GTLHCLDKDI-TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD  249 (502)
T ss_pred             CEEEEcCHHH-hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc
Confidence            4555665421 24889999999999999999999999877754

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07787 acyl-CoA synthetase; Validated

Probab=96.43  E-value=0.0098  Score=37.58  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+|+.|+ +++|.+.++|+++..+.+..
T Consensus       204 ~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~  234 (471)
T PRK07787        204 PTPEAYAQALS-EGGTLYFGVPTVWSRIAADP  234 (471)
T ss_pred             CCHHHHHHHHh-hCceEEEcchHHHHHHHhCc
Confidence            69999999999 99999999999998888643

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=96.41  E-value=0.008  Score=39.42  Aligned_cols=43  Identities=14%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.++.+.-.+...+++.++++++|+++++|+++..|++.
T Consensus       279 ~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~  321 (614)
T PRK08180        279 GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPA  321 (614)
T ss_pred             CEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHH
Confidence            3455555421111335778899999999999999999888763

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=96.41  E-value=0.009  Score=37.54  Aligned_cols=31  Identities=10%  Similarity=0.308  Sum_probs=27.7

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      .+++.+++.|+++++|++++.|+++..|.+.
T Consensus       154 ~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~  184 (422)
T TIGR02155       154 GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEE  184 (422)
T ss_pred             CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHH
Confidence            4679999999999999999999999887754

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=96.41  E-value=0.011  Score=41.58  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+. ....+++.+++.|+++++|++.++|+++..+++.
T Consensus       665 ~~l~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~  706 (1296)
T PRK10252        665 AKLVMAEP-EAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVAS  706 (1296)
T ss_pred             CEEEECCh-hccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence            34555442 1225899999999999999999999999988765

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=96.40  E-value=0.012  Score=38.01  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      .++..+++.++++++|.++++|++++.|++..
T Consensus       286 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  317 (560)
T PRK08974        286 RDIPGFVKELKKYPFTAITGVNTLFNALLNNE  317 (560)
T ss_pred             cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCc
Confidence            48899999999999999999999999988764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=96.38  E-value=0.012  Score=37.80  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=29.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+.    ++++.+++.|+++++|.+.+.|+++..+++.
T Consensus       256 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~  293 (547)
T PRK06087        256 RSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNL  293 (547)
T ss_pred             EEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhc
Confidence            4455544    6999999999999999998887777666654

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=96.09  E-value=0.016  Score=36.51  Aligned_cols=41  Identities=5%  Similarity=0.096  Sum_probs=32.1

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++++. ..+++..+++.++++++|++..+|++++.+...
T Consensus       211 ~~v~~~~~-~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~  251 (503)
T PRK04813        211 TLVALPKD-MTANFKQLFETLPQLPINVWVSTPSFADMCLLD  251 (503)
T ss_pred             EEEEcChh-hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHh
Confidence            45556542 225899999999999999999999999876644

>PRK06060 acyl-CoA synthetase; Validated

Probab=96.07  E-value=0.021  Score=38.05  Aligned_cols=31  Identities=6%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..++++++++++|+++++|+++..+.+.
T Consensus       223 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  253 (705)
T PRK06060        223 VTPEAAAILSARFGPSVLYGVPNFFARVIDS  253 (705)
T ss_pred             CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHh
Confidence            5888999999999999999999999888764

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=96.04  E-value=0.015  Score=37.74  Aligned_cols=31  Identities=16%  Similarity=-0.023  Sum_probs=28.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+++.|+++++|.+.++|+++..++..
T Consensus       259 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  289 (576)
T PRK05620        259 LSAPTLAKIIATAMPRVAHGVPTLWIQLMVH  289 (576)
T ss_pred             CCHHHHHHHHHHhcCceeeecCHHHHHHHHH
Confidence            5899999999999999999999999877754

>PRK12316 peptide synthase; Provisional

Probab=95.98  E-value=0.022  Score=45.38  Aligned_cols=43  Identities=7%  Similarity=0.084  Sum_probs=34.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.+.. ..++++.+++.|++++||+++++|++++.|++.+
T Consensus       722 ~~l~i~~~~-~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~  764 (5163)
T PRK12316        722 ARLVVAAPG-DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE  764 (5163)
T ss_pred             CEEEECCcc-ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc
Confidence            455665432 2269999999999999999999999999998653

>PRK12316 peptide synthase; Provisional

Probab=95.93  E-value=0.023  Score=45.23  Aligned_cols=42  Identities=10%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.++. . ++++.+++.|+++++|+++++|++++.|.+..
T Consensus      4761 ~~lvi~~~~-~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~ 4802 (5163)
T PRK12316       4761 ASVVIRDDS-L-WDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA 4802 (5163)
T ss_pred             CEEEEcCcc-c-CCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhh
Confidence            455555542 2 38999999999999999999999999988764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=95.93  E-value=0.031  Score=39.78  Aligned_cols=31  Identities=16%  Similarity=0.058  Sum_probs=28.0

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      .++..+++.|+++++|+++++|++++.|...
T Consensus       493 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~  523 (1389)
T TIGR03443       493 GTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ  523 (1389)
T ss_pred             cCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence            4788999999999999999999999988754

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12467 peptide synthase; Provisional

Probab=95.75  E-value=0.031  Score=43.76  Aligned_cols=42  Identities=5%  Similarity=0.043  Sum_probs=34.0

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.++  ..++++.+++.|++++||+++++|++++.+++..
T Consensus      3304 ~~l~i~~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467       3304 GCLVVRDN--DLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred             CEEEECCc--ccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence            45555553  2269999999999999999999999999887653

>PRK12467 peptide synthase; Provisional

Probab=95.66  E-value=0.03  Score=43.85  Aligned_cols=42  Identities=12%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+.. ...|++.+++.|+++++|+++++|++++.|.+.
T Consensus      1785 ~~lvi~~~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467       1785 ARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred             CEEEEcChh-hcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence            455555432 225899999999999999999999999998874

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=95.60  E-value=0.011  Score=37.99  Aligned_cols=29  Identities=14%  Similarity=0.030  Sum_probs=22.6

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..+++.++++++|++..+|.++..+.+
T Consensus       233 ~~~~~~~~i~~~~~t~~~~p~~~~~~l~~  261 (525)
T PRK05851        233 SPFRWLSWLSDSRATLTAAPNFAYNLIGK  261 (525)
T ss_pred             CHHHHHHHHHHhCCeEEeCCcHHHHHHHH
Confidence            67889999999999988766655555544

>PRK05691 peptide synthase; Validated

Probab=95.49  E-value=0.04  Score=43.40  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=34.0

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.+. ...+|++.+++.|+++++|+++++|++++.+.+.+
T Consensus      1340 ~~l~i~~~-~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 1382 (4334)
T PRK05691       1340 CRLVLAGP-GEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382 (4334)
T ss_pred             CEEEEcCc-cccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCc
Confidence            45555543 22369999999999999999999999999987653

>PRK07514 malonyl-CoA synthase; Validated

Probab=95.45  E-value=0.037  Score=35.05  Aligned_cols=37  Identities=11%  Similarity=0.044  Sum_probs=29.4

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.++    ++++.+++.+  +++|.+.++|+++..++..+
T Consensus       225 ~~~~~~~----~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~  261 (504)
T PRK07514        225 SMIFLPK----FDPDAVLALM--PRATVMMGVPTFYTRLLQEP  261 (504)
T ss_pred             EEEECCC----CCHHHHHHHH--HhheeeecHHHHHHHHHcCC
Confidence            3455544    6899999999  47999999999998887654

>PRK07798 acyl-CoA synthetase; Validated

Probab=95.39  E-value=0.053  Score=34.39  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHH
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAI   38 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~   38 (63)
                      +++++.+..  .+++..+|+.|+++++|.+.++|..+
T Consensus       245 ~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~  279 (533)
T PRK07798        245 QTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAM  279 (533)
T ss_pred             ceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHH
Confidence            355666532  26999999999999999999988655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.14  E-value=0.074  Score=37.23  Aligned_cols=39  Identities=8%  Similarity=0.082  Sum_probs=31.0

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++++ +  ++.+.+++.++++++|+++++|+++..+.+.
T Consensus       862 ~~~~~~~-~--~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~  900 (1140)
T PRK06814        862 KVFLYPS-P--LHYRIIPELIYDTNATILFGTDTFLNGYARY  900 (1140)
T ss_pred             EEEEecC-c--ccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence            4455543 2  4677889999999999999999999888764

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=95.10  E-value=0.059  Score=33.06  Aligned_cols=42  Identities=7%  Similarity=-0.092  Sum_probs=32.6

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++++... .+++.++++++++++|.+.++|+++..|++..
T Consensus       188 ~~~~~~~~~~-~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~  229 (408)
T TIGR01733       188 TLVVPPEDEE-RDAALLAALIAEHPVTVLNLTPSLLALLAAAL  229 (408)
T ss_pred             EEEEcChhhc-cCHHHHHHHHHHcCceEEEeCHHHHHHHHHhh
Confidence            4555555321 14789999999999999999999999998764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=94.93  E-value=0.043  Score=34.08  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=26.3

Q ss_pred             hHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         17 DRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +.+++.++++++|++.++|++++.+.+.+
T Consensus       187 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~  215 (436)
T TIGR01923       187 NQLLEMIANERVTHISLVPTQLNRLLDEG  215 (436)
T ss_pred             HHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence            38999999999999999999999888764

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12582 acyl-CoA synthetase; Provisional

Probab=94.78  E-value=0.057  Score=35.59  Aligned_cols=28  Identities=7%  Similarity=0.088  Sum_probs=23.2

Q ss_pred             hHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         17 DRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ..+++.++++++|+++++|+++..|++.
T Consensus       306 ~~~~~~i~~~~~t~~~~vP~~~~~l~~~  333 (624)
T PRK12582        306 EETIRNLREISPTVYGNVPAGYAMLAEA  333 (624)
T ss_pred             HHHHHHHHhcCCeEEeccCHHHHHHHHH
Confidence            3456778899999999999999888753

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=94.57  E-value=0.094  Score=35.08  Aligned_cols=29  Identities=7%  Similarity=0.063  Sum_probs=26.2

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..+++.++++++|++.++|.++..+.+
T Consensus       300 ~~~~l~~~l~~~~pt~~~~vP~~~~~l~~  328 (660)
T PLN02430        300 DLNALRDDLMELKPTLLAGVPRVFERIHE  328 (660)
T ss_pred             ChhhHHHHHHHhCCcEEEecHHHHHHHHH
Confidence            77889999999999999999999987764

>KOG1179|consensus

Probab=94.47  E-value=0.099  Score=35.30  Aligned_cols=42  Identities=14%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG   47 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~   47 (63)
                      +|+|+-..    |++..+|+-..+|+||++--+--+.|.|++.+..
T Consensus       310 aT~VlrkK----FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~  351 (649)
T KOG1179|consen  310 ATVVLRKK----FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS  351 (649)
T ss_pred             ceEEEecc----cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC
Confidence            45666555    9999999999999999999899999999988753

>PTZ00297 pantothenate kinase; Provisional

Probab=94.28  E-value=0.082  Score=38.77  Aligned_cols=30  Identities=13%  Similarity=0.098  Sum_probs=27.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++++.+++.|+++++|+++++|++|..+.+
T Consensus       676 ~d~~~lledL~~~rPTv~~~VPrv~ekI~~  705 (1452)
T PTZ00297        676 VDAAHLQRAFVKFQPTILVAAPSLFSTSRL  705 (1452)
T ss_pred             CCHHHHHHHHHHHCCEEEEecHHHHHHHHH
Confidence            689999999999999999999999986654

>PRK05691 peptide synthase; Validated

Probab=93.29  E-value=0.21  Score=39.73  Aligned_cols=42  Identities=7%  Similarity=0.086  Sum_probs=33.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+.. ...|+..+++.+++++||++.++|++++.++..
T Consensus      3936 ~~l~i~~~~-~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~ 3977 (4334)
T PRK05691       3936 ARVEIVPNA-IAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE 3977 (4334)
T ss_pred             CEEEEcCcc-ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence            455566542 235899999999999999999999999988754

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=92.77  E-value=0.2  Score=31.73  Aligned_cols=30  Identities=7%  Similarity=-0.033  Sum_probs=24.9

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++..+++.++.+  |+++++|++++.+.+.+
T Consensus       173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~  202 (386)
T TIGR02372       173 APASGIMRHARPG--DLIVGTPFIWEQLADLD  202 (386)
T ss_pred             CChHHHHHhhccC--CEEEECcHHHHHHHhhC
Confidence            6888999988754  88999999999987653

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=92.73  E-value=0.65  Score=28.38  Aligned_cols=32  Identities=6%  Similarity=-0.097  Sum_probs=25.5

Q ss_pred             CChhHHHHHHhhhc--ceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYK--VNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~--vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.+++++  ++....+|+.+..++..+
T Consensus       111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~  144 (358)
T PRK07824        111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP  144 (358)
T ss_pred             cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc
Confidence            69999999999998  556667888887766543

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=91.92  E-value=0.1  Score=34.32  Aligned_cols=31  Identities=10%  Similarity=0.014  Sum_probs=26.2

Q ss_pred             CChhHHHHHHh--hhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVE--KYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~--~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..+++.++  ++++|.++++|+++..+++.
T Consensus       273 ~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~  305 (612)
T PRK12476        273 RRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ  305 (612)
T ss_pred             HHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence            38999999995  58999999999998877653

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=91.51  E-value=0.2  Score=32.99  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             ChhHHHHHHhhhcc---eEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKV---NQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~v---T~~~~~Pt~~~~l~~   43 (63)
                      ++..+++.++++++   |.+.++|+++..+.+
T Consensus       260 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~  291 (631)
T PRK07769        260 RPGRWIRELARKPGGTGGTFSAAPNFAFEHAA  291 (631)
T ss_pred             CHHHHHHHHHhhccccCceEeeCCchHHHHHH
Confidence            89999999999987   788999998876654

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=91.31  E-value=0.2  Score=32.21  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=24.4

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..++++++++++|+++++|.++..+.+
T Consensus       234 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~  262 (545)
T PRK07768        234 DPLLWAELISKYRGTMTAAPNFAYALLAR  262 (545)
T ss_pred             hHHHHHHHHHHhCCEEEECchHHHHHHHH
Confidence            78889999999999999888877766553

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=87.42  E-value=0.88  Score=29.05  Aligned_cols=25  Identities=12%  Similarity=0.114  Sum_probs=20.1

Q ss_pred             HHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         20 WSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        20 ~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      .....++++|++.++|++++.+++.
T Consensus       200 ~~~~~~~~~t~~~~vP~~l~~l~~~  224 (452)
T PRK07445        200 QELPPNPSDFFLSLVPTQLQRLLQL  224 (452)
T ss_pred             hhhhhhcCceEEEehHHHHHHHHhh
Confidence            3445678999999999999988763

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=86.87  E-value=1.7  Score=29.35  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             HHhhhcceEEeecHHHHHHHHh
Q psy10051         22 IVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        22 ~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      .++++++|++.++|.++..+.+
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~  377 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKK  377 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHH
Confidence            5889999999999999987764

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=86.83  E-value=2.1  Score=29.18  Aligned_cols=30  Identities=7%  Similarity=0.089  Sum_probs=27.1

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      .|+..+++.+.+.+.|.+++||-+|..+.+
T Consensus       266 ~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~  295 (613)
T COG1022         266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYK  295 (613)
T ss_pred             CCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence            499999999999999999999999976654

>PRK09192 acyl-CoA synthetase; Validated

Probab=86.68  E-value=0.56  Score=30.61  Aligned_cols=29  Identities=7%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ++..++++++++++|+++..|.++..+..
T Consensus       258 ~~~~~~~~i~~~~~t~~~~~~~~~~l~~~  286 (579)
T PRK09192        258 RPLQWLDLISRNRGTISYSPPFGYELCAR  286 (579)
T ss_pred             CHHHHHHHHHhcCcEEEeCCcHHHHHHHH
Confidence            68899999999999988876665655543

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=86.39  E-value=0.72  Score=31.15  Aligned_cols=27  Identities=7%  Similarity=0.022  Sum_probs=23.4

Q ss_pred             hHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         17 DRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      ..+++.++++++|++.++|+++..+.+
T Consensus       337 ~~~~~~i~~~~pT~~~~vP~~l~~l~~  363 (696)
T PLN02387        337 KGTKGDASALKPTLMTAVPAILDRVRD  363 (696)
T ss_pred             cCchhhHHHhCCcEEEehhHHHHHHHH
Confidence            446778999999999999999988864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.33  E-value=3.6  Score=27.23  Aligned_cols=41  Identities=10%  Similarity=0.001  Sum_probs=32.3

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+.... .|++.+.+.++++++|.+..+|.++..++..
T Consensus       434 ~l~~~~~~~~-~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~  474 (642)
T COG1020         434 RLVLAPALLQ-VDPAALLELLEAQGITVLLLVPLLLRLLLLA  474 (642)
T ss_pred             EEEecCcccc-CCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence            3444443222 5899999999999999999999999988865

>KOG1256|consensus

Probab=82.74  E-value=3.3  Score=28.74  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=29.8

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      .+.+++|     |+..+-+-+.+.+.|.+.+||-.|..+.+
T Consensus       329 ~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye  364 (691)
T KOG1256|consen  329 KIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYE  364 (691)
T ss_pred             EEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHH
Confidence            3455666     88889999999999999999999976653

>PRK05850 acyl-CoA synthetase; Validated

Probab=81.85  E-value=1.5  Score=28.59  Aligned_cols=24  Identities=13%  Similarity=0.080  Sum_probs=19.1

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHH
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIR   39 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~   39 (63)
                      ++..++++++++++|.+ .+|+++.
T Consensus       247 ~p~~~~~~i~~~~~~~~-~~p~~~~  270 (578)
T PRK05850        247 RPARWMQLLASNPHAFS-AAPNFAF  270 (578)
T ss_pred             CHHHHHHHHHHcCCeEE-eCCcHHH
Confidence            78999999999999865 4565543

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=81.02  E-value=5.5  Score=25.63  Aligned_cols=27  Identities=15%  Similarity=0.178  Sum_probs=22.6

Q ss_pred             hHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         17 DRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        17 ~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      +..+++|+++++|.+.+.|+.+..|.+
T Consensus       166 ~~~~~~i~~~~~t~l~~~ps~ll~La~  192 (445)
T TIGR03335       166 TFPIRIIESYRPTGIVASVFKLLRLAR  192 (445)
T ss_pred             hHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            467899999999999999998766554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	63
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-10
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		6e-06
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		6e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-05
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-05
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-05
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-05
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-05

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVE 55
           FEGTP +P   RYW I++++KV QFY APTA+R L + G+  ++ H ++
Sbjct: 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK 384

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQ 50
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	63
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	5e-26
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	8e-26
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-12
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	8e-10

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 97.3 bits (243), Expect = 5e-26
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEGTP +P   RYW I++++KV QFY APTA+R L + G+  ++ H
Sbjct: 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 381

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 96.9 bits (242), Expect = 8e-26
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++  
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGT 375

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 58.0 bits (141), Expect = 3e-12
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMK 43
           ++   F            KY V  F   PT  R L+K
Sbjct: 298 YDYDRFEA--KNMLEKASKYGVTTFCAPPTIYRFLIK 332

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 51.1 bits (123), Expect = 8e-10
 Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG 45
                F P        +  Y +     AP   R L++  
Sbjct: 279 HLLPKFDP--LVILKTLSSYPIKSMMGAPIVYRMLLQQD 315

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	63
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.86
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.78
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.11
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.05
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.02
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	97.99
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	97.95
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	97.94
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	97.83
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	97.81
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	97.77
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	97.76
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	97.71
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	97.67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	97.61
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	97.55
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	97.42
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	97.42
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	97.37
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	97.35
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	97.27
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	97.27
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	97.23
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	97.22
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	97.18
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	97.16
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	97.11
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	96.93
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	96.79
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	96.7
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	96.66
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	96.66
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	96.31
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	95.81
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	94.8
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	94.3

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=98.86  E-value=6.9e-09  Score=66.99  Aligned_cols=58  Identities=40%  Similarity=0.698  Sum_probs=47.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      ++++++++.|.+++++++|++|++++||+++++|++++.|++.+......+++++++.
T Consensus       331 ~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~  388 (663)
T 1ry2_A          331 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC  388 (663)
T ss_dssp             SEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEE
Confidence            5788999888778999999999999999999999999999987643234567776554

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=98.78  E-value=1.1e-08  Score=65.79  Aligned_cols=58  Identities=36%  Similarity=0.503  Sum_probs=46.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      ++++++++.|.+++++.+|++|+++++|+++++|++++.|++.+......+++++++.
T Consensus       325 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~  382 (652)
T 1pg4_A          325 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI  382 (652)
T ss_dssp             CEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE
T ss_pred             ceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEE
Confidence            5788999878778999999999999999999999999999986532123456666554

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=98.11  E-value=8.3e-06  Score=51.48  Aligned_cols=51  Identities=14%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|++++.|.+.+.  ....++++++
T Consensus       262 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr  312 (548)
T 2d1s_A          262 FRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLSNLV  312 (548)
T ss_dssp             CEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCTTCC
T ss_pred             cEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccccee
Confidence            35566654    799999999999999999999999999988654  2345565544

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=98.05  E-value=1e-05  Score=50.95  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=41.0

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|++++.|.+...  ....++++++.
T Consensus       260 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~  311 (550)
T 3rix_A          260 FRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNLHE  311 (550)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTCCE
T ss_pred             CEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccccE
Confidence            45566654    799999999999999999999999999998754  34456666543

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=98.02  E-value=1.5e-05  Score=50.02  Aligned_cols=52  Identities=19%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +++++.+.    ++++.+++.|+++++|++.++|+++..+.+.+.  ....++++++.
T Consensus       250 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~  301 (536)
T 3ni2_A          250 APILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRM  301 (536)
T ss_dssp             CCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCE
T ss_pred             CEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceE
Confidence            45666654    799999999999999999999999999988754  34556666543

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=97.99  E-value=1.7e-05  Score=50.48  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++++..  .|+++.+++.|+++++|+++++|++++.|++..   ....++++++
T Consensus       293 ~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~l~~lr  344 (580)
T 3etc_A          293 CAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHYNFSTLK  344 (580)
T ss_dssp             CEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---CCTTCC
T ss_pred             cEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccCCCccce
Confidence            345566422  279999999999999999999999999998764   2445666654

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=97.95  E-value=1.7e-05  Score=49.49  Aligned_cols=53  Identities=11%  Similarity=0.076  Sum_probs=38.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|++++.|.+.........++++++
T Consensus       223 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr  275 (504)
T 1t5h_X          223 GTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR  275 (504)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCC
T ss_pred             ceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCcccc
Confidence            34555554    799999999999999999999999999987542101234555544

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=97.94  E-value=8.4e-06  Score=51.31  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|+++..+++...  ....++++++
T Consensus       251 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr  301 (539)
T 1mdb_A          251 GRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQ  301 (539)
T ss_dssp             CEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCC
T ss_pred             CEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCcccee
Confidence            45566654    799999999999999999999999999886532  1234555543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=97.83  E-value=1.6e-05  Score=49.80  Aligned_cols=51  Identities=10%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    ++++.+|+.|+++++|+++++|++++.|.+.+.  ....++++++
T Consensus       237 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  287 (517)
T 3r44_A          237 VTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFR  287 (517)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCC
T ss_pred             eEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCccc
Confidence            35566654    799999999999999999999999999987643  2334555443

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=97.81  E-value=1.6e-05  Score=50.08  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    +++..+++.|+++++|+++++|++++.+++...  ....++++++
T Consensus       260 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  310 (544)
T 3o83_A          260 GCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA--QYKDQIQSLK  310 (544)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT--TTHHHHTTCC
T ss_pred             CEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchh--hccccCCcce
Confidence            35556554    799999999999999999999999999887643  2233444443

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=97.77  E-value=2.9e-05  Score=48.91  Aligned_cols=40  Identities=20%  Similarity=0.134  Sum_probs=34.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|++++.|++..
T Consensus       247 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  286 (549)
T 3g7s_A          247 NEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTL  286 (549)
T ss_dssp             CEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred             ceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh
Confidence            35566654    79999999999999999999999999988753

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=97.76  E-value=5.1e-05  Score=50.73  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=40.4

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|+++..|.+...  ....++++++.
T Consensus       297 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~  348 (979)
T 3tsy_A          297 AAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRV  348 (979)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCE
T ss_pred             cEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEE
Confidence            35566554    799999999999999999999999999987754  24456665543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=97.71  E-value=3.3e-05  Score=48.63  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=29.5

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|+++++|+++..|.+..
T Consensus       254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  285 (541)
T 1v25_A          254 LDPASLVELFDGEGVTFTAGVPTVWLALADYL  285 (541)
T ss_dssp             CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCeeEEecchHHHHHHHhhh
Confidence            69999999999999999999999999888653

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=97.67  E-value=0.00013  Score=46.32  Aligned_cols=52  Identities=12%  Similarity=0.020  Sum_probs=38.9

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+. + .++++.+++.|+++++|+++++|++++.|++.+.   ...++++++
T Consensus       274 ~~~~~~~~-~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~lr  325 (570)
T 3c5e_A          274 ACTFVHLL-P-KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL---SSYKFPHLQ  325 (570)
T ss_dssp             CEEEEECC-S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT---TTCCCTTCC
T ss_pred             ceEEEecC-C-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc---cccccccce
Confidence            34555553 2 2799999999999999999999999999987632   334555543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.61  E-value=0.00013  Score=45.33  Aligned_cols=41  Identities=12%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      +++++.+.    ++++.+++.|+++++|+++++|++++.|++.+.
T Consensus       230 ~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  270 (501)
T 3ipl_A          230 FTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGL  270 (501)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC
T ss_pred             ceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC
Confidence            45666654    799999999999999999999999999988654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=97.55  E-value=7.2e-05  Score=45.81  Aligned_cols=38  Identities=11%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.++    ++++.+++.|+++++|+++++|+++..|.+.
T Consensus       158 ~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  195 (436)
T 3qov_A          158 LTVPAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEV  195 (436)
T ss_dssp             EEECCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred             EEEeCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence            4444444    6999999999999999999999999988865

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=97.42  E-value=7.8e-05  Score=46.50  Aligned_cols=43  Identities=5%  Similarity=0.091  Sum_probs=34.4

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      ++++.+++.|+++++|++.++|+++..++....  ....++++++
T Consensus       222 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  264 (512)
T 3fce_A          222 ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMK  264 (512)
T ss_dssp             HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCC
T ss_pred             hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCcccc
Confidence            489999999999999999999999999887654  2344555543

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=97.42  E-value=8.9e-05  Score=46.29  Aligned_cols=42  Identities=7%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELD   57 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l   57 (63)
                      ++++.+++.|+++++|++.++|++++.+++.+.  ....+++++
T Consensus       221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l  262 (511)
T 3e7w_A          221 NKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHA  262 (511)
T ss_dssp             HSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTC
T ss_pred             cCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcc
Confidence            489999999999999999999999999987654  233445443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=97.37  E-value=0.00015  Score=44.49  Aligned_cols=31  Identities=6%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+++.|+++++|+++++|+++..|.+.
T Consensus       171 ~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  201 (443)
T 2y4o_A          171 GQTEKQVQLIRDFEPKIILVTPSYMLNLIDE  201 (443)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence            5999999999999999999999999988764

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=97.35  E-value=0.00036  Score=44.17  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=34.5

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.++.  .+++..+++.|+++++|++.++|++++.|++..
T Consensus       280 ~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  321 (570)
T 4gr5_A          280 ARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV  321 (570)
T ss_dssp             CEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC
T ss_pred             CEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence            345666542  269999999999999999999999999998753

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=97.27  E-value=0.0004  Score=44.39  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+.    +++..+++.|+++++|+++++|++++.+++.
T Consensus       253 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  291 (617)
T 3rg2_A          253 GTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQA  291 (617)
T ss_dssp             CEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred             CEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence            45566554    6999999999999999999999999988764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=97.27  E-value=0.00073  Score=42.19  Aligned_cols=49  Identities=10%  Similarity=0.085  Sum_probs=36.6

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++++.+.    ++++.+++.++  ++|+++++|+++..+++.+.  ....++++++
T Consensus       223 ~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  271 (503)
T 4fuq_A          223 GSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMR  271 (503)
T ss_dssp             CEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCC
T ss_pred             CEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcE
Confidence            34555554    79999999998  89999999999999988754  2334455543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=97.23  E-value=0.0008  Score=42.11  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE   46 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~   46 (63)
                      ++++.+++.|+++++|+++++|+++..+++...
T Consensus       261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  293 (529)
T 2v7b_A          261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPN  293 (529)
T ss_dssp             CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT
T ss_pred             CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc
Confidence            799999999999999999999999999887643

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=97.22  E-value=0.00053  Score=41.98  Aligned_cols=31  Identities=3%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      ++++.+++.|+++++|+++++|+++..|.+.
T Consensus       169 ~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  199 (437)
T 2y27_A          169 GQTEKQVQLIQDFRPDIIMVTPSYMLSIADE  199 (437)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence            5999999999999999999999999988764

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=97.18  E-value=0.00065  Score=43.72  Aligned_cols=42  Identities=7%  Similarity=0.035  Sum_probs=34.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      +++++.+..+  ++++.+++.|+++++|+++++|++++.|.+..
T Consensus       230 ~~~v~~~~~~--~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~  271 (620)
T 4dg8_A          230 GCCVLNDLGP--LDPGVLRQLIGERGADSAWLTASLFNTLVDLD  271 (620)
T ss_dssp             CEEEECCSSS--CCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC
T ss_pred             CEEEeCcccc--CCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC
Confidence            4556654322  69999999999999999999999999988653

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=97.16  E-value=0.00052  Score=42.74  Aligned_cols=32  Identities=9%  Similarity=0.007  Sum_probs=30.2

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcC
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYG   45 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~   45 (63)
                      ++++.+++.|+++++|+++++|+++..+++..
T Consensus       235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  266 (509)
T 3ivr_A          235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA  266 (509)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence            79999999999999999999999999998765

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=97.11  E-value=0.0011  Score=41.36  Aligned_cols=53  Identities=6%  Similarity=0.062  Sum_probs=37.7

Q ss_pred             ceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051          3 PGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus         3 t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      ++++.+. ....++..+++.|+++++|++.++|+++..++....  ....++++++
T Consensus       215 ~~~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr  267 (521)
T 3l8c_A          215 TLFALPK-ELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALT  267 (521)
T ss_dssp             EEEECCG-GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCC
T ss_pred             EEEEcCH-HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccce
Confidence            4444443 222489999999999999999999999998887654  2334555443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=96.93  E-value=0.00062  Score=42.94  Aligned_cols=44  Identities=11%  Similarity=-0.048  Sum_probs=33.1

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHhcCCC-CCccccCCccc
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEG-PVQKHEVELDS   58 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~-~~~~~dl~~l~   58 (63)
                      ++..+++.|+++++|+++++|+++..+.+.... .....++++++
T Consensus       248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr  292 (590)
T 3kxw_A          248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWV  292 (590)
T ss_dssp             CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCC
T ss_pred             CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhH
Confidence            789999999999999999999999988765221 12334555544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=96.79  E-value=0.0025  Score=38.19  Aligned_cols=27  Identities=19%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             HHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         18 RYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        18 ~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      .+++.|+++++|+++++|+++..|.+.
T Consensus       196 ~~~~~i~~~~~t~l~~~Ps~~~~l~~~  222 (369)
T 3hgu_A          196 QVQNTLMNQDIRFLVTTPPVLRELLKR  222 (369)
T ss_dssp             HHHHHHHHSCEEEEEECHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCEEEeCHHHHHHHHhh
Confidence            888899999999999999999998765

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=96.66  E-value=0.0018  Score=39.02  Aligned_cols=37  Identities=5%  Similarity=0.114  Sum_probs=29.0

Q ss_pred             HHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         19 YWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        19 ~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      .++.|+++++|+++++|++++.|++...   ...++++++
T Consensus       115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~---~~~~l~~lr  151 (358)
T 4gs5_A          115 PLAGLDHADFDFVAMVPMQLQSILENSA---TSGQVDRLG  151 (358)
T ss_dssp             TTTTCSSCCCSEEEECHHHHHHHHHCTT---TGGGGGGGC
T ss_pred             HHHHHHHhCCeEEEcChHHHHHhhcccc---ccccCCcce
Confidence            4678999999999999999999998754   234555544

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=96.66  E-value=0.00081  Score=41.32  Aligned_cols=44  Identities=11%  Similarity=0.055  Sum_probs=31.2

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHhcCC--CCCccccCCcccc
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGE--GPVQKHEVELDSN   59 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~--~~~~~~dl~~l~~   59 (63)
                      +++.+++.|+++++| +.++|+++..++....  ......++++++.
T Consensus       270 ~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~  315 (480)
T 3t5a_A          270 RPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT  315 (480)
T ss_dssp             CTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE
T ss_pred             CHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe
Confidence            899999999999999 7888888877765311  0123456666543

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=96.31  E-value=0.0067  Score=37.93  Aligned_cols=38  Identities=8%  Similarity=0.072  Sum_probs=31.3

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+.    ++++.+++.+ ++++|+++++|+++..+++.
T Consensus       223 ~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~  260 (505)
T 3nyq_A          223 GSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAET  260 (505)
T ss_dssp             CEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHH
T ss_pred             CEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHh
Confidence            34555544    7999999999 88999999999999988763

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=95.81  E-value=0.011  Score=40.88  Aligned_cols=42  Identities=10%  Similarity=0.044  Sum_probs=33.7

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++++.+.. ..+|++.+++.|++++||+++++|++++.+.+.
T Consensus       673 ~~l~~~~~~-~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~  714 (1304)
T 2vsq_A          673 ARLIIADEH-TLLDTERLTDLILQENVNVMFATTALFNLLTDA  714 (1304)
T ss_dssp             CEEEECCGG-GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred             CEEEECChh-hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence            455555432 226999999999999999999999999998765

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=94.80  E-value=0.0064  Score=38.59  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=26.7

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      +++..+++.|+++++|+++++|+++..+..
T Consensus       260 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  289 (563)
T 1amu_A          260 NDFVKFEQYINQKEITVITLPPTYVVHLDP  289 (563)
T ss_dssp             TCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred             cCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence            489999999999999999999999876643

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=94.30  E-value=0.016  Score=36.44  Aligned_cols=29  Identities=10%  Similarity=-0.061  Sum_probs=24.8

Q ss_pred             ChhHHHHHHhhhcceEEeecHHHHHHHHh
Q psy10051         15 GNDRYWSIVEKYKVNQFYTAPTAIRTLMK   43 (63)
Q Consensus        15 d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~   43 (63)
                      .++.+++.++++++|+++++|++++.+..
T Consensus       260 ~~~~~~~~i~~~~~t~~~~~P~~l~~~~~  288 (562)
T 3ite_A          260 MLDDLPRTFRELGVTHAGIVPSLLDQTGL  288 (562)
T ss_dssp             HHHSHHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred             CHHHHHHHHHHcCCCEEEcCHHHHhhccc
Confidence            35778999999999999999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	63
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-08
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-07

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 45.0 bits (106), Expect = 4e-08
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHE 53
           FEG P  P   R   +V+K++VN  YTAPTAIR LM  G+  ++  +
Sbjct: 326 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 7   FEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKH 52
           FEGTP +P   RYW I++++KV QFY APTA+R L + G+  ++ H
Sbjct: 313 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	98.99
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.81
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	96.98
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	94.09
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	93.91
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	93.38

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.99  E-value=3.4e-10  Score=71.21  Aligned_cols=58  Identities=36%  Similarity=0.503  Sum_probs=49.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      +|+|+++|.|.+++++.+|++|++++||+++++|++++.|++.+......+|++++++
T Consensus       321 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~  378 (643)
T d1pg4a_         321 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI  378 (643)
T ss_dssp             CEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE
T ss_pred             CEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEE
Confidence            5789999989889999999999999999999999999999987543235567777654

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=6.5e-09  Score=64.72  Aligned_cols=58  Identities=40%  Similarity=0.698  Sum_probs=49.1

Q ss_pred             CceEeecCCCCCCChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCcccc
Q psy10051          2 NPGRKFEGTPFHPGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDSN   59 (63)
Q Consensus         2 ~t~vl~~g~p~~~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~~   59 (63)
                      ++++++++.|.++|++.+|++|++++||+++++|++++.|++.+......+++++++.
T Consensus       308 ~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~  365 (640)
T d1ry2a_         308 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC  365 (640)
T ss_dssp             SEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE
T ss_pred             CEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEE
Confidence            4688899888888999999999999999999999999999987654345677877664

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00038  Score=41.67  Aligned_cols=43  Identities=16%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      +++..++++++++++|++.++|+++..+++...  ....++++++
T Consensus       247 ~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~--~~~~~~~~lr  289 (534)
T d1v25a_         247 LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLR  289 (534)
T ss_dssp             CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCC
T ss_pred             ccccccchhhhhccccccccCchhhhhhhhhhc--ccccccccee
Confidence            799999999999999999999999998886533  2344566554

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=94.09  E-value=0.03  Score=32.90  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..+++.+++++++.+..+|..+..+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (536)
T d1mdba_         259 PSPDDAFPLIEREKVTITALVPPLAMVWMDA  289 (536)
T ss_dssp             SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhccccccccchhhhhhhhh
Confidence            7999999999999999999999999877755

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=93.91  E-value=0.04  Score=31.79  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=28.0

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKY   44 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~   44 (63)
                      +++..++..+.+++++.++.+|+.+..++..
T Consensus       231 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  261 (503)
T d3cw9a1         231 FRPVDALQLVQQEQVTSLFATPTHLDALAAA  261 (503)
T ss_dssp             CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred             cChHHhhhhhhhceeeccccccccccccccc
Confidence            6999999999999999999999998876654

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=93.38  E-value=0.15  Score=29.92  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=34.3

Q ss_pred             CChhHHHHHHhhhcceEEeecHHHHHHHHhcCCCCCccccCCccc
Q psy10051         14 PGNDRYWSIVEKYKVNQFYTAPTAIRTLMKYGEGPVQKHEVELDS   58 (63)
Q Consensus        14 ~d~~~~~~~i~~~~vT~~~~~Pt~~~~l~~~~~~~~~~~dl~~l~   58 (63)
                      ++....+..+.++++|.++++|+++..+.+...  ....+++.++
T Consensus       265 ~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~~~l~  307 (541)
T d1lcia_         265 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNLH  307 (541)
T ss_dssp             CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC--GGGSCCTTCC
T ss_pred             cccchhHHHHhhhhccccccCcccccccccccc--ccccccccce
Confidence            689999999999999999999999998887654  2344555443