Psyllid ID: psy10057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEccccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHcccccHHHHHHHccccEEEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEcc
Coil and Loop (DISEMBL)
mgrkhpapepqldeepvgkkirseeslipeqvflskmatpnvtfnvvvpnmtdkpewklngqtlsLSLDLRTSVTALKSQIHDligmpagkqklhldvs
Flexible Loop (DISEMBL)
mgrkhpapepqldeepvgkkirseeSLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHdligmpagkqklhldvs
Low Complexity Region (SEG)
MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMAtpnvtfnvvvpnMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS
Disordered region (IsUnstruct)
******************************QVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG*************
Disordered Region (DISOPRED)
***************************IPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ*L*****
Disordered Region (DISEMBL)
******************KKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS
Disordered Region (DISPRO)
************************ESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
A2VDN6	793	Splicing factor 3A subuni	yes	N/A	0.858	0.107	0.5	5e-18
Q15459	793	Splicing factor 3A subuni	yes	N/A	0.858	0.107	0.5	5e-18
Q8K4Z5	791	Splicing factor 3A subuni	yes	N/A	0.787	0.098	0.518	5e-16

>sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 12  LDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLR 71
           +++EP  KK+++E+SL+PE+ FL +   P V+  V VPNM DK EWKLNGQ L  +L L 
Sbjct: 676 MEDEPASKKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQVLVFTLPLT 734

Query: 72  TSVTALKSQIHDLIGMPAGKQKLHLD 97
             V+ +K +IH+  GMPAGKQKL  +
Sbjct: 735 DQVSVIKVKIHEATGMPAGKQKLQYE 760

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Bos taurus (taxid: 9913)

>sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 12  LDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLR 71
           +++EP  KK+++E+SL+PE+ FL +   P V+  V VPNM DK EWKLNGQ L  +L L 
Sbjct: 676 MEDEPTSKKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQVLVFTLPLT 734

Query: 72  TSVTALKSQIHDLIGMPAGKQKLHLD 97
             V+ +K +IH+  GMPAGKQKL  +
Sbjct: 735 DQVSVIKVKIHEATGMPAGKQKLQYE 760

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Homo sapiens (taxid: 9606)

>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 19  KKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALK 78
           KK+++E+SL+PE+ FL +   P V+  V VPNM DK EWKLNGQ L  +L L   V+ +K
Sbjct: 681 KKLKTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIK 739

Query: 79  SQIHDLIGMPAGKQKLHLD 97
            +IH+  GMPAGKQKL  +
Sbjct: 740 VKIHEATGMPAGKQKLQYE 758

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
332021152	768	Splicing factor 3 subunit 1 [Acromyrmex	0.959	0.123	0.546	2e-21
322796789	769	hypothetical protein SINV_06548 [Solenop	0.959	0.123	0.536	9e-21
156544891	760	PREDICTED: splicing factor 3A subunit 1-	0.949	0.123	0.520	2e-19
345480982	761	PREDICTED: splicing factor 3A subunit 1-	0.949	0.123	0.531	2e-19
340712928	704	PREDICTED: splicing factor 3A subunit 1-	0.949	0.133	0.536	5e-19
340712930	773	PREDICTED: splicing factor 3A subunit 1-	0.949	0.121	0.536	5e-19
350419582	773	PREDICTED: splicing factor 3A subunit 1-	0.949	0.121	0.536	5e-19
350419579	766	PREDICTED: splicing factor 3A subunit 1-	0.949	0.122	0.536	5e-19
340712926	766	PREDICTED: splicing factor 3A subunit 1-	0.949	0.122	0.536	5e-19
383847807	766	PREDICTED: splicing factor 3A subunit 1	0.949	0.122	0.525	7e-19

>gi|332021152|gb|EGI61537.1| Splicing factor 3 subunit 1 [Acromyrmex echinatior]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KHPA +P L+EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 641 IGLKHPASKP-LEEEPQAKKLRTEDSLIPEQQFLARNKDP-VQINIAVPMMTEKAEWKLN 698

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L +  +V  +K+ IH+ IGMP GKQKL  +
Sbjct: 699 GQTLNITLQISDTVATMKALIHEQIGMPPGKQKLQYE 735

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796789|gb|EFZ19216.1| hypothetical protein SINV_06548 [Solenopsis invicta]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KHPA +P L++EP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 642 IGLKHPASKP-LEDEPQAKKLRTEDSLIPEQQFLARNKGP-VQINIAVPMMTEKAEWKLN 699

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L +  +V  +K+ IH+ IGMP GKQKL  +
Sbjct: 700 GQTLNVTLQVSDTVATMKALIHEQIGMPPGKQKLQYE 736

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544891|ref|XP_001607229.1| PREDICTED: splicing factor 3A subunit 1-like [Nasonia vitripennis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 2   GRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNG 61
           G KHPA E  +++EP  KK+R+E+SLIPEQ FL++   P V  N+ VP M +K EWKLNG
Sbjct: 634 GMKHPA-EGGMEDEPQHKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMAEKTEWKLNG 691

Query: 62  QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           QTL +SL +  S+  +K++IH+  GMP GKQKL  +
Sbjct: 692 QTLQISLQITDSIATMKARIHEQTGMPPGKQKLQYE 727

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480982|ref|XP_001607186.2| PREDICTED: splicing factor 3A subunit 1-like [Nasonia vitripennis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 2   GRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNG 61
           G KHPA E  +++EP  KK+R+E+SLIPEQ FL++   P V  N+ VP M +K EWKLNG
Sbjct: 635 GMKHPA-EGGMEDEPQHKKLRTEDSLIPEQQFLARNNGP-VQLNIAVPMMAEKTEWKLNG 692

Query: 62  QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           QTL +SL +  SV  +K++IH+  GMP GKQKL  +
Sbjct: 693 QTLQISLQITDSVATMKARIHEQTGMPPGKQKLQYE 728

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712928|ref|XP_003395004.1| PREDICTED: splicing factor 3A subunit 1-like isoform 2 [Bombus terrestris]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KH A EP ++EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 578 IGLKHTA-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMTEKAEWKLN 634

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L L  +V  +K+ IH+  GMP GKQKL  +
Sbjct: 635 GQTLNITLQLSDTVATMKALIHEQTGMPPGKQKLQYE 671

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712930|ref|XP_003395005.1| PREDICTED: splicing factor 3A subunit 1-like isoform 3 [Bombus terrestris]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KH A EP ++EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 647 IGLKHTA-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMTEKAEWKLN 703

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L L  +V  +K+ IH+  GMP GKQKL  +
Sbjct: 704 GQTLNITLQLSDTVATMKALIHEQTGMPPGKQKLQYE 740

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419582|ref|XP_003492233.1| PREDICTED: splicing factor 3A subunit 1-like isoform 2 [Bombus impatiens]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KH A EP ++EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 647 IGLKHTA-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMTEKAEWKLN 703

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L L  +V  +K+ IH+  GMP GKQKL  +
Sbjct: 704 GQTLNITLQLSDTVATMKALIHEQTGMPPGKQKLQYE 740

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419579|ref|XP_003492232.1| PREDICTED: splicing factor 3A subunit 1-like isoform 1 [Bombus impatiens]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KH A EP ++EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 640 IGLKHTA-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMTEKAEWKLN 696

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L L  +V  +K+ IH+  GMP GKQKL  +
Sbjct: 697 GQTLNITLQLSDTVATMKALIHEQTGMPPGKQKLQYE 733

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712926|ref|XP_003395003.1| PREDICTED: splicing factor 3A subunit 1-like isoform 1 [Bombus terrestris]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           +G KH A EP ++EEP  KK+R+E+SLIPEQ FL++   P V  N+ VP MT+K EWKLN
Sbjct: 640 IGLKHTA-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLNIAVPMMTEKAEWKLN 696

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L L  +V  +K+ IH+  GMP GKQKL  +
Sbjct: 697 GQTLNITLQLSDTVATMKALIHEQTGMPPGKQKLQYE 733

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847807|ref|XP_003699544.1| PREDICTED: splicing factor 3A subunit 1 [Megachile rotundata]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 3/97 (3%)

Query: 1   MGRKHPAPEPQLDEEPVGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLN 60
           MG KHP  EP ++EEP  KK+R+E+SLIPEQ FL++   P V  ++ VP MT+K EWKLN
Sbjct: 640 MGLKHPN-EP-MEEEPQTKKLRTEDSLIPEQQFLARNKGP-VQLSIAVPMMTEKAEWKLN 696

Query: 61  GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
           GQTL+++L +  +V+ +K+ IH+  GMP GKQKL  +
Sbjct: 697 GQTLNITLQVSDTVSTMKALIHEQTGMPPGKQKLQYE 733

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|F1NU16	790	SF3A1 "Uncharacterized protein	0.898	0.112	0.466	3.8e-16
UNIPROTKB|E2RDL8	793	SF3A1 "Uncharacterized protein	0.898	0.112	0.433	1.5e-14
UNIPROTKB|E9PAW1	728	SF3A1 "Splicing factor 3A subu	0.898	0.122	0.433	2.2e-14
UNIPROTKB|I3LQZ7	757	I3LQZ7 "Uncharacterized protei	0.898	0.117	0.433	2.4e-14
UNIPROTKB|A2VDN6	793	SF3A1 "Splicing factor 3A subu	0.898	0.112	0.433	2.5e-14
UNIPROTKB|Q15459	793	SF3A1 "Splicing factor 3A subu	0.898	0.112	0.433	2.5e-14
UNIPROTKB|F1RFD3	793	SF3A1 "Splicing factor 3A subu	0.898	0.112	0.433	2.5e-14
MGI|MGI:1914715	791	Sf3a1 "splicing factor 3a, sub	0.898	0.112	0.433	6.8e-14
RGD|1311477	791	Sf3a1 "splicing factor 3a, sub	0.898	0.112	0.433	6.8e-14
ZFIN|ZDB-GENE-030616-156	780	sf3a1 "splicing factor 3a, sub	0.919	0.116	0.419	2.1e-12

UNIPROTKB|F1NU16 SF3A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 42/90 (46%), Positives = 56/90 (62%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EPV KK++SE+SLIPE+ FL +              M DK EWKLNGQ L  +
Sbjct:   669 PPPPMEDEPVSKKLKSEDSLIPEEEFLQEQGMAQSQSKSVPN-MQDKTEWKLNGQVLVFT 727

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   728 LPLSDQVSVIKVKIHEATGMPAGKQKLQYE 757

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005684 "U2-type spliceosomal complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2RDL8 SF3A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   672 PPPPMEDEPASKKLKTEDSLVPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005684 "U2-type spliceosomal complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|E9PAW1 SF3A1 "Splicing factor 3A subunit 1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   607 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 665

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   666 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 695

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LQZ7 I3LQZ7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   636 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 694

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   695 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 724

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|A2VDN6 SF3A1 "Splicing factor 3A subunit 1" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   672 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760

GO:0005684 "U2-type spliceosomal complex" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|Q15459 SF3A1 "Splicing factor 3A subunit 1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   672 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760

GO:0005684 "U2-type spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS

GO:0003723 "RNA binding" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RFD3 SF3A1 "Splicing factor 3A subunit 1" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   672 PPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQVLVFT 730

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   731 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 760

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1914715 Sf3a1 "splicing factor 3a, subunit 1" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   670 PPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQGLVFT 728

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   729 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 758

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005684 "U2-type spliceosomal complex" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|1311477 Sf3a1 "splicing factor 3a, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)

Query:     8 PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLS 67
             P P +++EP  KK+++E+SL+PE+ FL +              M DK EWKLNGQ L  +
Sbjct:   670 PPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPN-MQDKTEWKLNGQGLVFT 728

Query:    68 LDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   729 LPLTDQVSVIKVKIHEATGMPAGKQKLQYE 758

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005684 "U2-type spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-030616-156 sf3a1 "splicing factor 3a, subunit 1" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 39/93 (41%), Positives = 55/93 (59%)

Query:     6 PA-PEPQLDEEPVGKKIRSEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTL 64
             PA P P  ++EP  KK+++E++LI E  FL +              M DK EWKL+GQ L
Sbjct:   656 PAHPPPPHEDEPSSKKMKTEDNLIAEDEFLRRNKGPVAVKVQVPN-MQDKTEWKLSGQVL 714

Query:    65 SLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
             + +L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct:   715 NFNLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 747

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K4Z5	SF3A1_MOUSE	No assigned EC number	0.5189	0.7878	0.0986	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	8e-12
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.001
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	0.002

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 55.2 bits (133), Expect = 8e-12
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 55 PEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          PEWKLNGQ L+ +L L   V+ LK +IH+  GMPAGKQKL
Sbjct: 1  PEWKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKL 40

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 57 WKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
            L G+T  L +    +V  LK++I    G+P  +Q+L
Sbjct: 3  KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRL 40

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          L+G+T++L +D   +V+ LK +I D  G+P  +Q+L
Sbjct: 3  LDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRL 38

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.47
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.03
PTZ00044	76	ubiquitin; Provisional	99.01
KOG0007|consensus	341		99.0
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	98.98
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	98.95
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	98.95
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	98.94
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	98.92
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	98.9
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	98.9
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	98.89
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	98.89
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	98.87
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	98.87
KOG0005|consensus	70		98.85
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	98.85
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	98.84
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	98.82
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	98.77
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	98.76
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	98.74
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	98.74
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	98.74
KOG0003|consensus	128		98.73
KOG0004|consensus	156		98.68
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.66
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	98.57
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	98.49
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.42
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.26
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.19
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.17
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.16
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	97.89
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	97.88
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	97.79
KOG0001|consensus	75		97.77
KOG0011|consensus	340		97.64
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.63
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.51
PLN02560	308	enoyl-CoA reductase	97.32
KOG0010|consensus	493		97.1
KOG4248|consensus	1143		96.45
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	95.73
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	95.56
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	95.49
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	95.41
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.23
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.89
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	94.7
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	94.53
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	94.44
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	93.93
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	93.9
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	93.86
KOG1872|consensus	473		93.48
PF13019	162	Telomere_Sde2: Telomere stability and silencing	93.04
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	92.75
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	92.71
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	92.65
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	92.57
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	92.35
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	91.37
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	91.02
KOG4495|consensus	110		91.0
KOG3493|consensus	73		90.91
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	90.25
KOG0006|consensus	446		89.38
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	88.57
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	88.46
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	86.55
smart00455	70	RBD Raf-like Ras-binding domain.	84.2
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	83.45
KOG4250|consensus	732		83.22
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	83.17
KOG1769|consensus	99		81.47
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	80.22

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.47  E-value=7.2e-14  Score=89.49  Aligned_cols=43  Identities=58%  Similarity=1.000  Sum_probs=41.8

Q ss_pred             CCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         55 PEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        55 ~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+|||+|++++|+|++++||++||++|++.+|||+++|+|+|+
T Consensus         1 ~~~~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~   43 (76)
T cd01800           1 PEWKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE   43 (76)
T ss_pred             CCcccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence            6899999999999999999999999999999999999999986

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.03  E-value=3.2e-10  Score=72.22  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|++.|||+|+
T Consensus         6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~   44 (70)
T cd01794           6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS   44 (70)
T ss_pred             CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence            469999999999999999999999999999999999996

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.01  E-value=5.1e-10  Score=70.56  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=37.4

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~   46 (76)
T PTZ00044          8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS   46 (76)
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence            469999999999999999999999999999999999986

>KOG0007|consensus

Probab=99.00  E-value=1.5e-10  Score=92.36  Aligned_cols=81  Identities=32%  Similarity=0.471  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCcccCC-CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEec-CCccHHHHHHHHHHHhC
Q psy10057          9 EPQLDEEPVGKKIRS-EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLD-LRTSVTALKSQIHDLIG   86 (99)
Q Consensus         9 ~~~~~~~P~~Kr~k~-e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~-~tdTV~~LK~kI~e~~G   86 (99)
                      .++.+++|.+|+.+. ++.|+||.+|++.|++ ++++.|+.++       ..+|+++.+++. .+..|..||+||.+..+
T Consensus       247 p~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~-------~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~  318 (341)
T KOG0007|consen  247 PSPEEGDPRSKLDKSDEFALLPEADFLAGVPG-PVSIQVSRPV-------PADGQVIKITVQSLSENVASLKEKIADESQ  318 (341)
T ss_pred             CCCCCCCChhhcchhhhhhccchhhhhccCCC-Ccceeccccc-------CCCCceeeeccccccccccccccccccccc
Confidence            344667788999988 6899999999999999 9999999998       467999999998 99999999999999999


Q ss_pred             CCCCceEEEee
Q psy10057         87 MPAGKQKLHLD   97 (99)
Q Consensus        87 IP~~kQkL~~~   97 (99)
                      |++++|++.|.
T Consensus       319 i~~~~q~~~~~  329 (341)
T KOG0007|consen  319 IPANKQKLRGE  329 (341)
T ss_pred             cchhheeeccC
Confidence            99999999874

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=98.98  E-value=7e-10  Score=70.26  Aligned_cols=39  Identities=28%  Similarity=0.513  Sum_probs=37.1

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|..++||++||++|++++|+|++.|||+|+
T Consensus         8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~   46 (74)
T cd01807           8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK   46 (74)
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence            359999999999999999999999999999999999986

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=98.95  E-value=9.6e-10  Score=70.69  Aligned_cols=39  Identities=33%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      |++|+++.++|++++||++||++|++.+|+|+++|||+|
T Consensus         6 k~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~   44 (74)
T cd01813           6 KWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG   44 (74)
T ss_pred             EECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence            356999999999999999999999999999999999997

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=98.95  E-value=1e-09  Score=74.90  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=37.5

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|++++||++||++|++++|||+++|||+|+
T Consensus        35 l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~   73 (103)
T cd01802          35 LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN   73 (103)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence            569999999999999999999999999999999999986

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=98.94  E-value=2.7e-09  Score=68.73  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=37.2

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.|+.+.++|++++||++||++|+++.|+++++|||+|+
T Consensus         9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~   47 (73)
T cd01791           9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW   47 (73)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence            569999999999999999999999999999999999986

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=98.92  E-value=3.5e-09  Score=65.39  Aligned_cols=38  Identities=26%  Similarity=0.492  Sum_probs=36.3

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++++++++++||++||++|++.+|+|++.|||.|+
T Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~   46 (72)
T cd01809           9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS   46 (72)
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence            48899999999999999999999999999999999986

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=98.90  E-value=2.2e-09  Score=68.11  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++++++++++||++||++|+++.|+|+++|+|+|+
T Consensus         6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~   44 (74)
T cd01810           6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE   44 (74)
T ss_pred             CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence            569999999999999999999999999999999999986

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=98.90  E-value=2.1e-09  Score=67.26  Aligned_cols=39  Identities=21%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|+|+|+
T Consensus         6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~   44 (70)
T cd01798           6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA   44 (70)
T ss_pred             CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence            469999999999999999999999999999999999996

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=98.89  E-value=2.2e-09  Score=68.07  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=35.1

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~   44 (74)
T cd01793           8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA   44 (74)
T ss_pred             CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence            3589999999999999999999999999999999996

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=98.89  E-value=2.4e-09  Score=67.87  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV   98 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~   98 (99)
                      +|+++.++|++++||++||++|++++|+|++.|||+|+-
T Consensus         8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G   46 (71)
T cd01796           8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNG   46 (71)
T ss_pred             CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence            588999999999999999999999999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=98.87  E-value=3.9e-09  Score=65.80  Aligned_cols=39  Identities=21%  Similarity=0.504  Sum_probs=36.9

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.+++++++||++||++|++++|+|++.|||+|+
T Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~   46 (76)
T cd01806           8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS   46 (76)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence            359999999999999999999999999999999999986

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=98.87  E-value=2.7e-09  Score=69.22  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=35.6

Q ss_pred             ccCcE-EEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQT-LSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqt-i~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++ ++++ +.+++||++||++|++++|||+++|||+|+
T Consensus         8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~   48 (78)
T cd01797           8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR   48 (78)
T ss_pred             CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence            46887 6895 899999999999999999999999999996

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>KOG0005|consensus

Probab=98.85  E-value=1.6e-09  Score=69.55  Aligned_cols=40  Identities=20%  Similarity=0.486  Sum_probs=38.4

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+.|.++++++|+|+.+|++|++++|||+.+|||+|.
T Consensus         7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~   46 (70)
T KOG0005|consen    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYA   46 (70)
T ss_pred             eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhc
Confidence            4789999999999999999999999999999999999986

>cd01803 Ubiquitin Ubiquitin

Probab=98.85  E-value=4.3e-09  Score=65.60  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=36.9

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~   46 (76)
T cd01803           8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   46 (76)
T ss_pred             CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence            359999999999999999999999999999999999986

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=98.84  E-value=6.6e-09  Score=64.10  Aligned_cols=40  Identities=33%  Similarity=0.591  Sum_probs=38.1

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++|+++.++|.+++||+.||++|++++|+|++.|+|+|+
T Consensus         2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~   41 (69)
T PF00240_consen    2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN   41 (69)
T ss_dssp             ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred             CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence            3689999999999999999999999999999999999986

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=98.82  E-value=1.4e-08  Score=65.50  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+..+++|++++||++||++|+++.|+++++|||+|+
T Consensus        10 ~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~   47 (78)
T cd01804          10 TGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR   47 (78)
T ss_pred             CCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence            58899999999999999999999999999999999986

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=98.77  E-value=9.7e-09  Score=66.41  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=35.1

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|.+++++|++++||++||++|++++|||++.||| |+
T Consensus        11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~   47 (75)
T cd01799          11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI   47 (75)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence            57899999999999999999999999999999999 75

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=98.76  E-value=1.4e-08  Score=63.90  Aligned_cols=39  Identities=33%  Similarity=0.491  Sum_probs=36.8

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCC--CCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGM--PAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GI--P~~kQkL~~~   97 (99)
                      ++|++++++|++++||+.||++|++++|+  ++++|||+|+
T Consensus         8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~   48 (77)
T cd01805           8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS   48 (77)
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence            35889999999999999999999999999  9999999986

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=98.74  E-value=1.5e-08  Score=62.73  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|++..++|+.++||++||++|++.+|+|++.|||.|+
T Consensus         8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~   45 (71)
T cd01812           8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK   45 (71)
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence            38899999999999999999999999999999999986

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=98.74  E-value=3e-08  Score=65.45  Aligned_cols=47  Identities=23%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcE--EEEEecCCccHHHHHHHHHHHhC--CCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQT--LSLSLDLRTSVTALKSQIHDLIG--MPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqt--i~l~v~~tdTV~~LK~kI~e~~G--IP~~kQkL~~~   97 (99)
                      +|+|.|..|+          |+.  +++++++++||++||++|++..+  .++++|||+|.
T Consensus         1 ~i~l~IK~~~----------~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~   51 (79)
T cd01790           1 PVTLLIKSPN----------QKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS   51 (79)
T ss_pred             CeEEEEECCC----------CCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence            4889999886          445  55666899999999999999885  55899999996

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=98.74  E-value=2.5e-08  Score=64.22  Aligned_cols=39  Identities=38%  Similarity=0.474  Sum_probs=36.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE--Eee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL--HLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL--~~~   97 (99)
                      ++|+++++++++++||++||++|+++.|+++++|||  .|+
T Consensus        10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~   50 (80)
T cd01792          10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS   50 (80)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC
Confidence            359999999999999999999999999999999999  553

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0003|consensus

Probab=98.73  E-value=2.4e-09  Score=75.62  Aligned_cols=40  Identities=28%  Similarity=0.586  Sum_probs=38.3

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|.|+|++++|++++||.+||++|+++.|||+++|+|+|+
T Consensus         7 ~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~   46 (128)
T KOG0003|consen    7 TLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (128)
T ss_pred             EeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhc
Confidence            4789999999999999999999999999999999999986

>KOG0004|consensus

Probab=98.68  E-value=7.9e-09  Score=75.96  Aligned_cols=40  Identities=28%  Similarity=0.599  Sum_probs=38.1

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|.|++++++|++++||+++|++||+.+|||+++|||+|+
T Consensus         7 ~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifa   46 (156)
T KOG0004|consen    7 TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (156)
T ss_pred             hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhh
Confidence            3789999999999999999999999999999999999986

>smart00213 UBQ Ubiquitin homologues

Probab=98.66  E-value=7.8e-08  Score=57.42  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=33.9

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +++.++|++++||++||++|++.+|+|+++|+|.|+
T Consensus        10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~   45 (64)
T smart00213       10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK   45 (64)
T ss_pred             ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence            378899999999999999999999999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=98.57  E-value=1.6e-07  Score=58.94  Aligned_cols=37  Identities=11%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+. ++++++++||++||++|++++|+++++|||.|+
T Consensus         9 ~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~   45 (71)
T cd01808           9 KDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA   45 (71)
T ss_pred             CCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            4764 899999999999999999999999999999986

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=98.49  E-value=5.6e-07  Score=59.03  Aligned_cols=47  Identities=13%  Similarity=0.261  Sum_probs=42.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|.|+-+          +|+.+.+.|..+++++.||++++++.|+++++|||+|+
T Consensus        11 ~i~I~v~~~----------~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~   57 (87)
T cd01763          11 HINLKVKGQ----------DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD   57 (87)
T ss_pred             eEEEEEECC----------CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence            577777643          49999999999999999999999999999999999996

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.42  E-value=5.6e-07  Score=54.24  Aligned_cols=38  Identities=29%  Similarity=0.477  Sum_probs=36.3

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+.+.+.+.++.||+.||++|++++|+++++|+|.|+
T Consensus         6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~   43 (69)
T cd01769           6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA   43 (69)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence            69999999999999999999999999999999999885

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.26  E-value=1.2e-06  Score=60.96  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ...+++|.+++||++||.+|++.+|+++.+|+|+|+
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d   50 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID   50 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence            357889999999999999999999999999999986

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.19  E-value=1.1e-05  Score=52.52  Aligned_cols=48  Identities=21%  Similarity=0.412  Sum_probs=39.9

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |.|.|..++..        ++.....++.+.||++||.+|+..+|+|++.|+|.+-
T Consensus         2 v~l~It~~~~~--------~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~   49 (87)
T PF14560_consen    2 VKLFITSSNSK--------QRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK   49 (87)
T ss_dssp             EEEEEEESSSS--------SSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred             EEEEEEeCCCC--------CeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence            56677776532        4688899999999999999999999999999999874

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.17  E-value=1.6e-06  Score=60.95  Aligned_cols=48  Identities=19%  Similarity=0.116  Sum_probs=39.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHH-----HHhCCC--CCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIH-----DLIGMP--AGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~-----e~~GIP--~~kQkL~~~   97 (99)
                      .|.|+.++++..|         .-.+.+.+++||++||++|+     +++|+|  +++|||+|+
T Consensus         4 ~~e~kfrl~dg~d---------igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys   58 (113)
T cd01814           4 QIEIKFRLYDGSD---------IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA   58 (113)
T ss_pred             cEEEEEEccCCCc---------cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence            6889999986543         44567889999999999999     556677  999999996

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.16  E-value=2.4e-06  Score=69.83  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=37.1

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhC---CCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIG---MPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~G---IP~~kQkL~~~   97 (99)
                      ++|+++.|+|+.++||++||++|++..|   +++++|||+|.
T Consensus         8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~   49 (378)
T TIGR00601         8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS   49 (378)
T ss_pred             CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence            5699999999999999999999999999   99999999996

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=97.89  E-value=6.4e-05  Score=49.16  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      .......++++.||+.||++|+..+|++++.|||.+
T Consensus        12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l   47 (84)
T cd01789          12 SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQL   47 (84)
T ss_pred             ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEE
Confidence            445666799999999999999999999999999964

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=97.88  E-value=1e-05  Score=53.04  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=26.4

Q ss_pred             Eec-CCccHHHHHHHHHHHh--CCC-CCceEEEee
Q psy10057         67 SLD-LRTSVTALKSQIHDLI--GMP-AGKQKLHLD   97 (99)
Q Consensus        67 ~v~-~tdTV~~LK~kI~e~~--GIP-~~kQkL~~~   97 (99)
                      +|. .++||++||++|+++.  |++ +++|||+|+
T Consensus        15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~   49 (75)
T cd01815          15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC   49 (75)
T ss_pred             CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence            444 6799999999999995  575 999999996

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=97.79  E-value=0.00011  Score=45.50  Aligned_cols=46  Identities=22%  Similarity=0.413  Sum_probs=41.4

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC-CceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA-GKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~-~kQkL~~~   97 (99)
                      |+|.|+..          +|+.+.+.|..+++++.|+++++++.|++. ++.+|.|+
T Consensus         1 I~i~v~~~----------~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd   47 (72)
T PF11976_consen    1 ITIKVRSQ----------DGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD   47 (72)
T ss_dssp             EEEEEEET----------TSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred             CEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence            56777764          488999999999999999999999999999 99999986

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0001|consensus

Probab=97.77  E-value=7e-05  Score=44.10  Aligned_cols=39  Identities=28%  Similarity=0.595  Sum_probs=36.8

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.|+++.+.+..+++|..+|.+|+...|++..+|+|.|+
T Consensus         7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~   45 (75)
T KOG0001|consen    7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFG   45 (75)
T ss_pred             cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEEC
Confidence            569999999999999999999999999999999999875

>KOG0011|consensus

Probab=97.64  E-value=4.5e-05  Score=62.01  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=39.0

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhC--CCCCceEEEeec
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIG--MPAGKQKLHLDV   98 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~G--IP~~kQkL~~~~   98 (99)
                      +|.|++++++|.+++||..||.+|+...|  .|+++|||+|..
T Consensus         7 tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G   49 (340)
T KOG0011|consen    7 TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG   49 (340)
T ss_pred             eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence            58899999999999999999999999999  999999999974

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.63  E-value=0.00013  Score=40.10  Aligned_cols=38  Identities=29%  Similarity=0.562  Sum_probs=35.4

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+...+.+..++||+.||++|.++.|++++.|+|.++
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~   43 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN   43 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC
Confidence            58899999999999999999999999999999999875

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.51  E-value=0.00021  Score=46.81  Aligned_cols=45  Identities=18%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      .+.|+|+.|+          | +..|++++++|++.|+++|++.++++.+.|.|+.
T Consensus         4 ~milRvrS~d----------G-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~   48 (80)
T PF11543_consen    4 SMILRVRSKD----------G-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK   48 (80)
T ss_dssp             --EEEEE-SS----------E-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BS
T ss_pred             cEEEEEECCC----------C-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe
Confidence            5789999885          4 7788999999999999999999999999998854

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PLN02560 enoyl-CoA reductase

Probab=97.32  E-value=0.00034  Score=55.87  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             cCcEE---EEEecCCccHHHHHHHHHHHhCC-CCCceEEEee
Q psy10057         60 NGQTL---SLSLDLRTSVTALKSQIHDLIGM-PAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti---~l~v~~tdTV~~LK~kI~e~~GI-P~~kQkL~~~   97 (99)
                      +|+.+   +|++++++||++||.+|+++.|+ ++++|||.+.
T Consensus         9 ~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~   50 (308)
T PLN02560          9 SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP   50 (308)
T ss_pred             CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence            47777   79999999999999999999996 8999999974

>KOG0010|consensus

Probab=97.10  E-value=0.00082  Score=57.07  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=40.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|.|+|..|++           ...|.|..+.||..||+.|..++++++++|+|+|+
T Consensus        15 ~irV~Vkt~~d-----------k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa   60 (493)
T KOG0010|consen   15 LIRVTVKTPKD-----------KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA   60 (493)
T ss_pred             eeEEEEecCCc-----------ceeEecccchHHHHHHHHHHHhcCCChhHeeeeec
Confidence            37777777753           56789999999999999999999999999999996

>KOG4248|consensus

Probab=96.45  E-value=0.003  Score=57.84  Aligned_cols=40  Identities=20%  Similarity=0.433  Sum_probs=38.3

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+.++.++.+...+||.++|+.|.+..+|+.++|||+|+
T Consensus         9 tld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~   48 (1143)
T KOG4248|consen    9 TLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQ   48 (1143)
T ss_pred             ecccceeEEEechHHHHHHHHHHHHHhcccccccceeeec
Confidence            4789999999999999999999999999999999999996

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=95.73  E-value=0.036  Score=36.91  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +...++.|.+..+|..||++|...-|++- .|||+|.
T Consensus        10 ~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQ   45 (80)
T cd01811          10 YSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQ   45 (80)
T ss_pred             CCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEee
Confidence            55788999999999999999999999876 9999985

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=95.56  E-value=0.018  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .++-+++..++||-+||.+|+..+..|++.|||+
T Consensus        12 TTiF~dakes~tVlelK~~iegI~k~pp~dQrL~   45 (119)
T cd01788          12 TTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY   45 (119)
T ss_pred             eEEEeecCCcccHHHHHHHHHHHhcCChhHheee
Confidence            3677799999999999999999999999999997

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=95.49  E-value=0.032  Score=37.15  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++ +|.|.|+...+.+.|+++|.+++++|++.-+|+|.
T Consensus        10 ~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYk   46 (80)
T cd06406          10 KY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYK   46 (80)
T ss_pred             EE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEec
Confidence            35 99999999999999999999999999999999984

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=95.41  E-value=0.11  Score=33.13  Aligned_cols=45  Identities=9%  Similarity=0.162  Sum_probs=35.8

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      +..+|+|++||          |+.+...+..++||++|.+-|....+.....-.|
T Consensus         3 ~~~~I~iRlPd----------G~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L   47 (80)
T smart00166        3 DQCRLQIRLPD----------GSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTL   47 (80)
T ss_pred             CeEEEEEEcCC----------CCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEE
Confidence            36899999996          8899999999999999999996655554444333

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.23  E-value=0.065  Score=34.76  Aligned_cols=37  Identities=14%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG   86 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G   86 (99)
                      |..+|+|++||          |+.+...+..++||++|.+-|....+
T Consensus         3 p~t~iqiRlpd----------G~r~~~rF~~~~tv~~l~~~v~~~~~   39 (79)
T cd01770           3 PTTSIQIRLAD----------GKRLVQKFNSSHRVSDVRDFIVNARP   39 (79)
T ss_pred             CeeEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHHhCC
Confidence            36889999995          88999999999999999999998653

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.89  E-value=0.093  Score=33.12  Aligned_cols=37  Identities=11%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG   86 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G   86 (99)
                      |..+|+|++||          |+.+...+..++||++|.+-|.....
T Consensus         1 p~t~i~iRlpd----------G~~~~~~F~~~~tl~~l~~fv~~~~~   37 (77)
T cd01767           1 PTTKIQIRLPD----------GKRLEQRFNSTHKLSDVRDFVESNGP   37 (77)
T ss_pred             CcEEEEEEcCC----------CCEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35889999996          88899999999999999999986643

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=94.70  E-value=0.22  Score=31.35  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=35.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG   90 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~   90 (99)
                      .++|+|++|+          |+.+...+..++||..|.+-|....+.+..
T Consensus         6 ~~~I~vRlpd----------G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~   45 (82)
T PF00789_consen    6 VVRIQVRLPD----------GSRLQRRFPKSDTLQDLYDFVESQLFSPEE   45 (82)
T ss_dssp             EEEEEEEETT----------STEEEEEEETTSBHHHHHHHHHHHHHCTTT
T ss_pred             EEEEEEECCC----------CCEEEEEECCcchHHHHHHHHHHhcCCCCC
Confidence            7899999995          889999999999999999999988765554

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=94.53  E-value=0.25  Score=32.53  Aligned_cols=48  Identities=15%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      +|+ .++|.|++|+          |+.+.-.+..++||+.|.+-|+.. +-.+..-.|++
T Consensus         1 ~~~-~~~I~iRlp~----------G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t   48 (85)
T cd01774           1 APD-TVKIVFKLPN----------GTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVT   48 (85)
T ss_pred             CCc-eEEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEec
Confidence            466 8999999996          889999999999999999999754 33445555544

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00295 B41 Band 4

Probab=94.44  E-value=0.19  Score=35.65  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=35.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMP   88 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP   88 (99)
                      ++.++|.+|+          |.+.++.++.++||.+|-+.|..+.||.
T Consensus         3 ~~~~~V~l~d----------g~~~~~~~~~~~t~~ev~~~v~~~~~l~   40 (207)
T smart00295        3 PRVLKVYLLD----------GTTLEFEVDSSTTAEELLETVCRKLGIR   40 (207)
T ss_pred             cEEEEEEecC----------CCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            7999999985          7799999999999999999999999994

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=93.93  E-value=0.12  Score=34.87  Aligned_cols=44  Identities=14%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      +|.|.|.+||          |+++++++..+|+.+.|=+.+..+.|||.+-++.
T Consensus         1 ~V~L~V~Lpd----------g~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y   44 (87)
T cd01777           1 DVELRIALPD----------KATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY   44 (87)
T ss_pred             CeEEEEEccC----------CCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence            4789999996          8999999999999999999999999999876654

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=93.90  E-value=0.23  Score=34.39  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCc-EEEEEecCCccHHHHHHHHHHHh--C-----CCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQ-TLSLSLDLRTSVTALKSQIHDLI--G-----MPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gq-ti~l~v~~tdTV~~LK~kI~e~~--G-----IP~~kQkL~~~   97 (99)
                      .|.|+..+.          +|. +..+.+++++||++||++|...-  +     ..++..||+|.
T Consensus         2 ~i~lkf~l~----------~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~   56 (111)
T PF13881_consen    2 KIELKFRLA----------DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA   56 (111)
T ss_dssp             SEEEEEEET----------TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET
T ss_pred             eEEEEEEEe----------CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC
Confidence            477888876          377 88899999999999999999754  1     34567888874

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=93.86  E-value=0.076  Score=33.67  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=24.6

Q ss_pred             cCCccHHHHHHHHHHHhC-CCCCceEEEe
Q psy10057         69 DLRTSVTALKSQIHDLIG-MPAGKQKLHL   96 (99)
Q Consensus        69 ~~tdTV~~LK~kI~e~~G-IP~~kQkL~~   96 (99)
                      +++.||++||..|+...+ +++++|||.+
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~   48 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRL   48 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEe
Confidence            478899999999999986 6899999964

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>KOG1872|consensus

Probab=93.48  E-value=0.083  Score=44.95  Aligned_cols=37  Identities=27%  Similarity=0.524  Sum_probs=34.0

Q ss_pred             cCcEEEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         60 NGQTLSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        60 ~Gqti~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      .|+...++ ++..+|+..+|+++...+|+++++||+.+
T Consensus        11 ~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v   48 (473)
T KOG1872|consen   11 GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV   48 (473)
T ss_pred             cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEE
Confidence            38888887 89999999999999999999999999876

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=93.04  E-value=0.33  Score=36.06  Aligned_cols=31  Identities=39%  Similarity=0.562  Sum_probs=29.0

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCce
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQ   92 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQ   92 (99)
                      .++.+.++.+.||++|+++|.+.++++...|
T Consensus        15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~   45 (162)
T PF13019_consen   15 PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ   45 (162)
T ss_pred             CeEEeeCCCCCcHHHHHHHHHhhcCCCccce
Confidence            5899999999999999999999999999986

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=92.75  E-value=0.26  Score=32.70  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+.|.++...+.++|+++|.+++.++++.-+|+|.
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~   42 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR   42 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence            67788899999999999999999999999999985

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>smart00666 PB1 PB1 domain

Probab=92.71  E-value=0.46  Score=29.67  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|.+..+.++...+.++|+++|++++++..+..+|.|.
T Consensus         9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            37799999999999999999999999998777888774

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=92.65  E-value=0.62  Score=29.05  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             cCcEEE-EEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLS-LSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~-l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|.... +.+..+.+...|+++|.+++|++.+.-+|.|.
T Consensus         9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~   47 (84)
T PF00564_consen    9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK   47 (84)
T ss_dssp             TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence            355666 89998889999999999999999888888774

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=92.57  E-value=0.78  Score=29.82  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .++|+|++|+          |+.+.-....+++++.|.+-|... |.+...-+|.
T Consensus         4 ~~~i~iRlP~----------G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~   47 (80)
T cd01771           4 ISKLRVRTPS----------GDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLL   47 (80)
T ss_pred             eEEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEe
Confidence            6899999996          889999999999999999999764 6666655554

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=92.35  E-value=0.43  Score=30.59  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG   86 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G   86 (99)
                      ...|+|++||          |+.+.-.+..++||++|.+-|....+
T Consensus         4 ~~~i~iRlp~----------G~~~~~~F~~~~tl~~v~~fV~~~~~   39 (79)
T cd01772           4 ETRIQIRLLD----------GTTLKQTFKAREQLAAVRLFVELNTG   39 (79)
T ss_pred             EEEEEEECCC----------CCEEEEEeCCCChHHHHHHHHHHcCC
Confidence            4789999996          88999999999999999999986654

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=91.37  E-value=0.87  Score=30.49  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCC---CceEEEe
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPA---GKQKLHL   96 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~---~kQkL~~   96 (99)
                      .|+++-+.+.++..+..|++.|..++|+..   +.-.|.|
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            499999999999999999999999999887   4556666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=91.02  E-value=0.47  Score=29.44  Aligned_cols=30  Identities=30%  Similarity=0.501  Sum_probs=28.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMP   88 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP   88 (99)
                      |||.+.+++|+.+.|+..|=++|.++.||.
T Consensus         4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~   33 (80)
T PF09379_consen    4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLK   33 (80)
T ss_dssp             SSEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred             cCCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence            469999999999999999999999999986

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG4495|consensus

Probab=91.00  E-value=0.34  Score=33.82  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      -.+|-++...+.||-+||.+++..+.=|+|.|||+-
T Consensus        11 kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k   46 (110)
T KOG4495|consen   11 KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK   46 (110)
T ss_pred             ceeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence            347778999999999999999999999999999963

>KOG3493|consensus

Probab=90.91  E-value=0.14  Score=33.43  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      -|+.+.+.+.+.|||+.+|..|+.++|--++|..|
T Consensus        10 LGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl   44 (73)
T KOG3493|consen   10 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVL   44 (73)
T ss_pred             cCceEEEEeCCcccccCHHHHHHHhhCCChhHhHH
Confidence            48889999999999999999999999988887655

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=90.25  E-value=2  Score=28.42  Aligned_cols=47  Identities=19%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             CCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         39 TPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        39 g~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      ||--.|+|++|+          |+.+.-.+..++++..|..-|+. .|.+.+.-+|+-
T Consensus         3 ~~~t~i~vRlP~----------G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t   49 (82)
T cd01773           3 GPKARLMLRYPD----------GKREQIALPEQAKLLALVRHVQS-KGYPNERFELLT   49 (82)
T ss_pred             CCeeEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEec
Confidence            346789999996          88999999999999999999988 577878777753

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0006|consensus

Probab=89.38  E-value=0.59  Score=38.92  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..++|+|+.+..|..||+-++.++|+|+++-|.+|+
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa   49 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA   49 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe
Confidence            356778889999999999999999999999999996

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=88.57  E-value=1.6  Score=28.61  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCC-CceEEEe
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPA-GKQKLHL   96 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~-~kQkL~~   96 (99)
                      .+|.++.+.++++.+...|+++|.++.++.. +.-.|.|
T Consensus         7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY   45 (82)
T cd06407           7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY   45 (82)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence            3578999999999999999999999999865 4555555

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=88.46  E-value=1.6  Score=26.98  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             cCcEEEEEec-CCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         60 NGQTLSLSLD-LRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        60 ~Gqti~l~v~-~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      +|.+..+.+. .+.+..+|+++|.+++++....-+|.|
T Consensus         8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y   45 (81)
T cd05992           8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY   45 (81)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence            3668888888 899999999999999998865555555

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=86.55  E-value=1.1  Score=30.24  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             EEEEec--CCccHHHHHHHHHHHhC--CCCCceEEEee
Q psy10057         64 LSLSLD--LRTSVTALKSQIHDLIG--MPAGKQKLHLD   97 (99)
Q Consensus        64 i~l~v~--~tdTV~~LK~kI~e~~G--IP~~kQkL~~~   97 (99)
                      +.|++.  .+.||..||..|.+..+  ..-..+||+|+
T Consensus        14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~   51 (97)
T PF10302_consen   14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYA   51 (97)
T ss_pred             ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeec
Confidence            455555  88999999999999994  44456777775

They contain a characteristic GFDRL sequence motif.

>smart00455 RBD Raf-like Ras-binding domain

Probab=84.20  E-value=4.5  Score=25.62  Aligned_cols=43  Identities=14%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             EEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         44 FNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        44 i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      ++|-+||          |+...+.+-++.||.++=++|.++.|+.++.-.+..
T Consensus         2 ~~v~LP~----------~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~   44 (70)
T smart00455        2 CKVHLPD----------NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL   44 (70)
T ss_pred             eEEECCC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5677875          899999999999999999999999999877665543

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=83.45  E-value=4.5  Score=27.38  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=34.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..|.+..+.|+-+.+..+|++++.+..++..+ ..|.|.
T Consensus        20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~   57 (97)
T cd06410          20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ   57 (97)
T ss_pred             cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence            57999999999999999999999999999887 777774

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>KOG4250|consensus

Probab=83.22  E-value=1.7  Score=38.92  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +..+.+-+++..|+.+++++|+..+|||.+.|-|.|+
T Consensus       324 ~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e  360 (732)
T KOG4250|consen  324 ATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFE  360 (732)
T ss_pred             ceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeee
Confidence            5678888899999999999999999999999999987

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=83.17  E-value=8.7  Score=24.25  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      .+.|-+||          ||...+.+-+..||.+.=+++-++-|+.++.-.+
T Consensus         2 ~~~v~LP~----------~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V   43 (71)
T PF02196_consen    2 TCRVHLPN----------GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDV   43 (71)
T ss_dssp             EEEEEETT----------TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEE
T ss_pred             eEEEECCC----------CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEE
Confidence            46889996          8899999999999999999999999988876443

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>KOG1769|consensus

Probab=81.47  E-value=8.8  Score=26.53  Aligned_cols=47  Identities=13%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|.=   +       +|.++.+.|..+.+...|..-..++.|+..+.-|+.|+
T Consensus        20 hi~LKV~g---q-------d~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFd   66 (99)
T KOG1769|consen   20 HINLKVKG---Q-------DGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFD   66 (99)
T ss_pred             eEEEEEec---C-------CCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEEC
Confidence            48888773   2       38899999999999999999999999999999999986

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=80.22  E-value=9.6  Score=25.52  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCC
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMP   88 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP   88 (99)
                      +|.++.+.|+++-+...|.++|.++.|+.
T Consensus        10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~   38 (86)
T cd06408          10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK   38 (86)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            47799999999999999999999999994

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		1e-10
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-09

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 23 SEESLIPEQVFLSKMAXXXXXXXXXXXXMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIH 82
          +E+SL+PE+ FL +              M DK EWKLNGQ L  +L L   V+ +K +IH
Sbjct: 8  TEDSLMPEEEFLRR-NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIH 66
Query: 83 DLIGMPAGKQKLHLD 97
          +  GMPAGKQKL  +
Sbjct: 67 EATGMPAGKQKLQYE 81

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 51 MTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
          M DK EWKLNGQ L  +L L   V+ +K +IH+  GMPAGKQKL  +
Sbjct: 11 MQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-21
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-11
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	3e-05
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	3e-05
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-04
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-04
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	4e-04
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	5e-04

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 80.2 bits (198), Expect = 2e-21
 Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 19 KKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALK 78
              +E+SL+PE+ FL +   P V+  V VPNM DK EWKLNGQ L  +L L   V+ +K
Sbjct: 4  GSSGTEDSLMPEEEFLRRNKGP-VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIK 62

Query: 79 SQIHDLIGMPAGKQKL 94
           +IH+  GMPAGKQKL
Sbjct: 63 VKIHEATGMPAGKQKL 78

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 55.6 bits (134), Expect = 1e-11
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 16 PVGKKIRSEES-LIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLD-LRTS 73
            G   + +ES L+PE  FL++   P  T  V  PN  D       GQ + +++  L  +
Sbjct: 2  SSGSSGKFDESALVPEDQFLAQHPGP-ATIRVSKPNEND-------GQFMEITVQSLSEN 53

Query: 74 VTALKSQIHDLIGMPAGKQKL 94
          V +LK +I   I +PA KQKL
Sbjct: 54 VGSLKEKIAGEIQIPANKQKL 74

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
            N     + + L ++ + LK +IH + G+P   QK+
Sbjct: 23 IWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKV 59

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 38.0 bits (89), Expect = 3e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          K  G+++ LS+    +V  LKSQ+  +  +    QKL
Sbjct: 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKL 54

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          L+ QT +  +  + +V   K  I   + +P+ KQ+L
Sbjct: 25 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 60

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 3/36 (8%), Positives = 9/36 (25%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          +  Q     ++  T V        ++       +  
Sbjct: 8  VEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLF 43

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          L+ QT +  +  + +V   K  I   + +P+ KQ+L
Sbjct: 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 48

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          M    V   V           K +G+   + L  + +V  L+ +I     +   +QKL
Sbjct: 1  MEVKEVVVIV-----------KWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKL 47

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          L G+T   +L+  TSV  LKSQI   +G       L
Sbjct: 8  LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTL 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.95
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.83
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.23
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.17
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.16
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.15
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.06
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.05
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.04
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.04
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.03
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.03
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.01
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.0
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	98.99
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	98.98
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	98.98
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	98.97
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	98.97
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	98.97
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	98.97
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	98.95
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	98.95
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	98.94
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	98.93
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	98.93
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	98.92
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	98.92
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	98.91
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	98.91
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	98.91
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.9
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	98.89
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	98.89
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	98.89
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	98.89
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	98.89
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	98.88
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	98.88
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	98.88
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.85
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	98.84
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	98.84
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	98.84
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	98.84
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	98.83
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	98.83
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	98.82
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	98.82
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	98.8
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	98.8
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	98.8
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	98.79
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	98.79
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	98.77
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	98.76
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	98.76
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	98.75
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	98.74
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	98.74
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	98.73
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	98.72
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.72
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	98.72
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	98.7
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	98.69
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.14
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	98.68
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.67
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	98.67
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.65
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	98.64
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	98.61
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.6
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	98.58
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.57
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	98.56
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	98.5
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	98.5
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.5
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	98.5
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	98.48
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	98.44
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	98.42
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.41
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	98.33
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.24
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.19
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.16
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.07
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.04
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.02
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	97.91
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	97.89
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	97.79
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.28
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	97.06
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	96.81
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	96.38
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	96.31
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	96.13
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	95.76
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	95.57
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	94.89
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.26
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	94.09
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	93.97
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	93.87
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	93.86
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	93.84
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.75
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	92.3
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	91.68
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	91.46
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	91.46
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	89.33
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	89.32
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	88.46
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	88.4
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	87.51
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	86.4
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	86.34
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	86.31
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	85.96
2v1y_A	108	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.87
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	85.37
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	84.29
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	82.9
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	82.67
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	82.28
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	82.11
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	80.35

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.95  E-value=7.8e-28  Score=163.15  Aligned_cols=80  Identities=48%  Similarity=0.772  Sum_probs=77.7

Q ss_pred             CCcccCCCCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         17 VGKKIRSEESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        17 ~~Kr~k~e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      .+||+|+|++|+||++||++|+| +|+|+|++|+.+++++|+|+|++++|+|++++||++||++|++.+|||+++|||+|
T Consensus         2 ~~k~~~~~~~l~~e~~~l~~~~~-~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~   80 (115)
T 1we7_A            2 SSGSSGTEDSLMPEEEFLRRNKG-PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY   80 (115)
T ss_dssp             CCSCCCGGGSCCCHHHHHHHCCS-CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred             CccccCCccccCCHHHHHHhCCC-CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence            58999999999999999999999 99999999999899999999999999999999999999999999999999999998


Q ss_pred             e
Q psy10057         97 D   97 (99)
Q Consensus        97 ~   97 (99)
                      +
T Consensus        81 ~   81 (115)
T 1we7_A           81 E   81 (115)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.83  E-value=1.8e-20  Score=125.93  Aligned_cols=74  Identities=32%  Similarity=0.473  Sum_probs=67.9

Q ss_pred             CCCcccCC-CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC-CccHHHHHHHHHHHhCCCCCceE
Q psy10057         16 PVGKKIRS-EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL-RTSVTALKSQIHDLIGMPAGKQK   93 (99)
Q Consensus        16 P~~Kr~k~-e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~-tdTV~~LK~kI~e~~GIP~~kQk   93 (99)
                      -.+||+|+ |++|+||++||++||+ +++|.|++|+++       +|++++++|++ ++||++||++|++.+|||+++||
T Consensus         2 ~~~k~~~~~~~~l~~e~~~l~~~~~-~i~i~Vk~~~~~-------~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr   73 (111)
T 1we6_A            2 SSGSSGKFDESALVPEDQFLAQHPG-PATIRVSKPNEN-------DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK   73 (111)
T ss_dssp             CCCCCCSCCGGGCCCHHHHHHHCCS-CEEEEECCTTCS-------SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE
T ss_pred             CccccccCCccccCcHHHHHHhCCC-cEEEEEEecccC-------CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE
Confidence            36899995 5799999999999999 999999999653       48999999997 99999999999999999999999


Q ss_pred             EEee
Q psy10057         94 LHLD   97 (99)
Q Consensus        94 L~~~   97 (99)
                      |+|+
T Consensus        74 L~~~   77 (111)
T 1we6_A           74 LSGK   77 (111)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            9985

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=2.4e-11  Score=82.12  Aligned_cols=51  Identities=20%  Similarity=0.288  Sum_probs=46.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -.+|+|.+|+.-.      .|++++|+|++++||++||++|++++|+|+++|||+|+
T Consensus        15 ~ati~V~~~~~~~------~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~   65 (100)
T 1wju_A           15 IATIEVFLPPRLK------KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN   65 (100)
T ss_dssp             EEEEEEECCTTTC------CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred             eEEEEEEecCCCC------CCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence            6799999998432      37899999999999999999999999999999999996

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.17  E-value=6.2e-11  Score=79.47  Aligned_cols=39  Identities=21%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|+++|||++||++|++++|+|+++|||+|+
T Consensus        29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~   67 (93)
T 3plu_A           29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG   67 (93)
T ss_dssp             TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence            469999999999999999999999999999999999996

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.16  E-value=1.3e-10  Score=77.01  Aligned_cols=49  Identities=22%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|.|...+        +.|++++++|++++||++||++|++.+|||+++|||+|.
T Consensus        15 ~v~l~It~s~--------~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~   63 (95)
T 2kjr_A           15 FIKVNVSNSH--------NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF   63 (95)
T ss_dssp             EEEEEEEESS--------CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred             eEEEEEEECC--------CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence            6888888754        346799999999999999999999999999999999985

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.15  E-value=7.1e-11  Score=78.97  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             CCCCCcccCCCCC-CCcHH--HHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057         14 EEPVGKKIRSEES-LIPEQ--VFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG   90 (99)
Q Consensus        14 ~~P~~Kr~k~e~~-L~pE~--~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~   90 (99)
                      -+|.+||.+.++. .+.|+  -|+.-++...+.|.|...          +|+++.++|++++||++||++|++.+|+|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~   74 (111)
T 2ojr_A            5 IDTNNDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPD   74 (111)
T ss_dssp             CCTTCSSSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECS----------SSCEEEEEECTTCBHHHHHHHHHHHHCCCTT
T ss_pred             eecCCCceecCCEEEEeecccccccCCCCCeEEEEEEcC----------CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcc
Confidence            4789999998764 34444  476666543688888753          4889999999999999999999999999999


Q ss_pred             ceEEEee
Q psy10057         91 KQKLHLD   97 (99)
Q Consensus        91 kQkL~~~   97 (99)
                      +|||+|+
T Consensus        75 ~qrLi~~   81 (111)
T 2ojr_A           75 QQRLIFA   81 (111)
T ss_dssp             TEEEEET
T ss_pred             cEEEEEC
Confidence            9999985

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=71.26  Aligned_cols=47  Identities=21%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++.|.|...          +|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         4 ~m~i~Vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~   50 (79)
T 3phx_B            4 PLSILVRNN----------KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE   50 (79)
T ss_dssp             CEEEEEECT----------TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CEEEEEEeC----------CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence            477777754          58999999999999999999999999999999999996

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.06  E-value=2.7e-10  Score=76.91  Aligned_cols=39  Identities=18%  Similarity=0.122  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|+++|||++||++|++++|||+++|||+|+
T Consensus        36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~   74 (100)
T 1uh6_A           36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW   74 (100)
T ss_dssp             SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            458999999999999999999999999999999999986

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.05  E-value=2e-10  Score=73.80  Aligned_cols=40  Identities=33%  Similarity=0.558  Sum_probs=37.8

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus        17 ~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   56 (84)
T 2kk8_A           17 NLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD   56 (84)
T ss_dssp             ETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             ecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence            4579999999999999999999999999999999999985

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.04  E-value=6.1e-10  Score=70.60  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=43.8

Q ss_pred             hCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         36 KMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        36 ~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..+. .+.|.|..          ++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus        13 ~~~~-~m~i~Vk~----------~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~   63 (88)
T 4eew_A           13 EEPD-SLEVLVKT----------LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ   63 (88)
T ss_dssp             --CC-EEEEEEEE----------TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             cCCC-eEEEEEEc----------CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            4556 67777775          358999999999999999999999999999999999995

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.04  E-value=7.2e-10  Score=73.74  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|.|...+.        .++.++++|++++||++||++|++++|||+++|||+|.
T Consensus        14 ~v~l~It~s~~--------~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~   62 (97)
T 2kj6_A           14 SVHLHITHANL--------KSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY   62 (97)
T ss_dssp             CEEEEEEETTS--------SCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred             eEEEEEEECCC--------CceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence            68888888543        35789999999999999999999999999999999985

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.04  E-value=6.4e-10  Score=70.75  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.|+|.+++||++||++|++++|+|+++|||+|+
T Consensus        13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~   51 (90)
T 4dwf_A           13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ   51 (90)
T ss_dssp             TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            458999999999999999999999999999999999995

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.03  E-value=6.2e-10  Score=73.51  Aligned_cols=56  Identities=14%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         30 EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        30 E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+.|...-+. .+.|.|...           |+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus        15 ~~~~~~~~~~-~m~I~Vk~~-----------g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   70 (101)
T 2klc_A           15 ENLYFQGHPK-IMKVTVKTP-----------KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA   70 (101)
T ss_dssp             --------CC-CEEEEEECS-----------SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             cccccCCCCC-eEEEEEEeC-----------CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence            7788888888 788888753           5688999999999999999999999999999999985

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.03  E-value=5.6e-10  Score=75.98  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=45.6

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|...|+++|.+=+...   |   +.+++|+|++++||+.||++|++++|||+++|||+|+
T Consensus        18 ~~~~~i~l~v~v~d~~s---~---~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g   72 (105)
T 4dbg_A           18 SPTQDIRLWVSVEDAQM---H---TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG   72 (105)
T ss_dssp             --CCCEEEEEEEEESSS---C---CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCcEEEEEEEEccCC---C---CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence            34338999999865432   2   4799999999999999999999999999999999986

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.01  E-value=8.6e-10  Score=72.68  Aligned_cols=51  Identities=16%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|.+++.      .++|++++++|++++||++||++|++++|||+++|||+|+
T Consensus         7 ~m~I~Vk~~~~------~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   57 (102)
T 1v5o_A            7 GMLITVYCVRR------DLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM   57 (102)
T ss_dssp             CEEEEEEECCC------CCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred             eEEEEEEECCC------CcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence            37788888753      2568999999999999999999999999999999999985

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.00  E-value=1.5e-09  Score=68.38  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=42.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus         7 ~m~i~Vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~   53 (87)
T 1wh3_A            7 GIQVFVKNP----------DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ   53 (87)
T ss_dssp             SEEEEEEET----------TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred             CEEEEEEcC----------CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence            677777754          48899999999999999999999999999999999985

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=4.4e-10  Score=75.41  Aligned_cols=38  Identities=16%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      ++|++++|+|++++||++||++|++++|||+++|||+|
T Consensus        16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~   53 (100)
T 2dzm_A           16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG   53 (100)
T ss_dssp             CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred             eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence            45999999999999999999999999999999999986

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=98.98  E-value=1.5e-09  Score=69.46  Aligned_cols=47  Identities=21%  Similarity=0.293  Sum_probs=41.9

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus         4 ~m~I~Vk~~----------~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   50 (88)
T 2hj8_A            4 PLSILVRNN----------KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE   50 (88)
T ss_dssp             EEEEEEEET----------TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred             cEEEEEECC----------CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence            466777754          48899999999999999999999999999999999986

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2e-09  Score=66.46  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=41.9

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus         7 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~   53 (81)
T 2dzi_A            7 GMQLTVKAL----------QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK   53 (81)
T ss_dssp             SEEEEEEET----------TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred             cEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence            577777753          48899999999999999999999999999999999985

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.97  E-value=1.4e-09  Score=67.20  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEE-EEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTL-SLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti-~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++ +++ |++++||++||++|++++|+|+++|||+|+
T Consensus         2 ~m~i~Vk~~----------~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~   50 (78)
T 2faz_A            2 SMWIQVRTM----------DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR   50 (78)
T ss_dssp             CEEEEEEET----------TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             cEEEEEEEC----------CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence            466777754          47785 899 999999999999999999999999999985

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=98.97  E-value=1.9e-09  Score=67.51  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             CCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHH---hCCCCCceEEEee
Q psy10057         38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDL---IGMPAGKQKLHLD   97 (99)
Q Consensus        38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~---~GIP~~kQkL~~~   97 (99)
                      |+ .+.|.|...          +|++++++|++++||++||++|+++   +|+|+++|||+|+
T Consensus         3 ~~-~m~i~vk~~----------~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~   54 (85)
T 2wyq_A            3 PM-AVTITLKTL----------QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA   54 (85)
T ss_dssp             -C-CEEEEEEET----------TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred             Cc-eEEEEEEEC----------CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence            55 678888764          4889999999999999999999998   8999999999985

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=98.97  E-value=1.8e-09  Score=69.15  Aligned_cols=47  Identities=23%  Similarity=0.478  Sum_probs=42.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|..          ++|+++.++|.+++||++||++|++++|+|+++|||+|+
T Consensus        17 ~m~i~Vk~----------~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   63 (91)
T 3v6c_B           17 SMQIFVNT----------LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   63 (91)
T ss_dssp             SEEEEEEC----------TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             eEEEEEEe----------CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence            56677764          358999999999999999999999999999999999996

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=98.97  E-value=1.5e-09  Score=68.19  Aligned_cols=47  Identities=17%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++.|+|++++||++||++|++.+|+|+++|||+|+
T Consensus        12 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~   58 (88)
T 3dbh_I           12 SMLIKVKTL----------TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS   58 (88)
T ss_dssp             CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred             cEEEEEEcC----------CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence            577777743          58899999999999999999999999999999999995

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=98.95  E-value=7.7e-10  Score=70.93  Aligned_cols=39  Identities=21%  Similarity=0.504  Sum_probs=37.1

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   46 (88)
T 4fbj_B            8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS   46 (88)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence            469999999999999999999999999999999999985

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=98.95  E-value=2.2e-09  Score=66.71  Aligned_cols=47  Identities=23%  Similarity=0.470  Sum_probs=41.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus         3 ~m~i~vk~~----------~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~   49 (85)
T 3mtn_B            3 HMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   49 (85)
T ss_dssp             CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             eEEEEEEcC----------CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence            466667654          48899999999999999999999999999999999985

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=98.94  E-value=1.9e-09  Score=66.93  Aligned_cols=39  Identities=13%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|.+++||+.||++|+++.|+|+++|||+|+
T Consensus        11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~   49 (79)
T 2uyz_B           11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE   49 (79)
T ss_dssp             TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence            458999999999999999999999999999999999996

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.93  E-value=1.8e-09  Score=67.23  Aligned_cols=39  Identities=28%  Similarity=0.548  Sum_probs=36.8

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus        11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~   49 (85)
T 3n3k_B           11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   49 (85)
T ss_dssp             GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence            358899999999999999999999999999999999985

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=98.93  E-value=1e-09  Score=70.32  Aligned_cols=40  Identities=28%  Similarity=0.586  Sum_probs=37.8

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +++|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus        16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   55 (88)
T 1sif_A           16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA   55 (88)
T ss_dssp             ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             eCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence            4569999999999999999999999999999999999985

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=98.92  E-value=2.8e-09  Score=64.70  Aligned_cols=38  Identities=18%  Similarity=0.483  Sum_probs=36.3

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~   46 (76)
T 1ndd_A            9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS   46 (76)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence            48899999999999999999999999999999999985

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.92  E-value=1.6e-09  Score=69.36  Aligned_cols=40  Identities=30%  Similarity=0.453  Sum_probs=37.5

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +++|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus        18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   57 (85)
T 2kd0_A           18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK   57 (85)
T ss_dssp             EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred             EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence            3569999999999999999999999999999999999985

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=98.91  E-value=2.6e-09  Score=69.81  Aligned_cols=47  Identities=13%  Similarity=0.329  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|+.          ++|++++|+|.+++||+.||++|+++.|||+++|||+|+
T Consensus        21 ~m~I~Vk~----------~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~   67 (97)
T 1wyw_B           21 YIKLKVIG----------QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE   67 (97)
T ss_dssp             EEEEEEEC----------TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             cEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence            57777764          358999999999999999999999999999999999996

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=98.91  E-value=4.2e-09  Score=68.79  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +| +++++|++++||++||++|++++|+|+++|||+|+
T Consensus        15 ~~~I~Vk~~----------~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   60 (94)
T 2kan_A           15 KIHVTVKFP----------SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS   60 (94)
T ss_dssp             CEEEEEECS----------SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred             CEEEEEEcC----------Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence            577777753          35 89999999999999999999999999999999985

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.91  E-value=2.9e-09  Score=68.61  Aligned_cols=47  Identities=32%  Similarity=0.299  Sum_probs=41.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCc--EEEEEecCCccHHHHHHHHHHHh--CCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQ--TLSLSLDLRTSVTALKSQIHDLI--GMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gq--ti~l~v~~tdTV~~LK~kI~e~~--GIP~~kQkL~~~   97 (99)
                      .+.|.|..++          |+  +++|+|++++||++||++|++.+  |+|+++|||+|.
T Consensus         7 ~m~i~Vk~~~----------~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~   57 (93)
T 1wgd_A            7 GVTLLVKSPN----------QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS   57 (93)
T ss_dssp             CCEEEEECSS----------SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred             EEEEEEEeCC----------CCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence            6888888764          44  78888889999999999999999  999999999995

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.90  E-value=3.6e-09  Score=68.99  Aligned_cols=50  Identities=20%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|.+|+.       ++|+.+.+.++.+.||+.||.+|+..+|+|+++|||+|.
T Consensus         9 ~v~l~I~~~~~-------~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~   58 (97)
T 1wjn_A            9 LLTLKIKCSNQ-------PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE   58 (97)
T ss_dssp             EEEEEEEESSC-------SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred             cEEEEEEecCC-------CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence            79999999854       368999999999999999999999999999999999986

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.3e-09  Score=69.14  Aligned_cols=47  Identities=26%  Similarity=0.465  Sum_probs=42.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus        22 ~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   68 (98)
T 4hcn_B           22 PMQIFVKTL----------TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA   68 (98)
T ss_dssp             CCEEEEEET----------TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             eEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence            577777754          48899999999999999999999999999999999985

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=98.89  E-value=5.2e-09  Score=64.06  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus        12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~   49 (77)
T 2bwf_A           12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS   49 (77)
T ss_dssp             TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            38899999999999999999999999999999999986

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.89  E-value=6.4e-09  Score=65.81  Aligned_cols=47  Identities=15%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccC-cEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNG-QTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~G-qti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +| +++++ +|++++||++||++|++.+|+|+++|||+|+
T Consensus         7 ~m~i~Vk~~----------~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~   55 (89)
T 1wy8_A            7 GMWIQVRTI----------DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR   55 (89)
T ss_dssp             CEEEEEEET----------TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred             cEEEEEEEC----------CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence            577777764          37 69999 5999999999999999999999999999985

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=98.89  E-value=8.9e-10  Score=71.94  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             ccCcEEEEEec--CCccHHHHHHHH-HHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLD--LRTSVTALKSQI-HDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~--~tdTV~~LK~kI-~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|+  +++||++||++| ++.+|+|+++|||+|+
T Consensus         9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~   50 (87)
T 2lxa_A            9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK   50 (87)
T ss_dssp             CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence            56888988866  999999999999 9999999999999996

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=98.89  E-value=3.3e-09  Score=70.67  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             hCCCCceEEEEEeCCCCCCCCCcccCc--EEEEEecCCccHHHHHHHHHHH-hCCC-CCceEEEee
Q psy10057         36 KMATPNVTFNVVVPNMTDKPEWKLNGQ--TLSLSLDLRTSVTALKSQIHDL-IGMP-AGKQKLHLD   97 (99)
Q Consensus        36 ~~pg~~v~i~V~~P~~~~k~ewkL~Gq--ti~l~v~~tdTV~~LK~kI~e~-~GIP-~~kQkL~~~   97 (99)
                      ..++ .+.|.|+.++          |+  +++|+|++++||++||++|+++ .|+| +++|||+|+
T Consensus        19 ~~~~-~m~I~VK~~~----------g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~   73 (99)
T 2kdb_A           19 FQGH-PVTLIIKAPN----------QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS   73 (99)
T ss_dssp             -----CEEEEEECTT----------SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred             CCCC-eEEEEEEcCC----------CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence            3456 7999999864          44  6899999999999999999997 5666 599999995

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.88  E-value=3e-09  Score=69.81  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=35.7

Q ss_pred             cCcEE-EEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTL-SLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti-~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++ .|+|++++||++||++|++.+|||+++|||+|.
T Consensus        15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~   53 (96)
T 1wgg_A           15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK   53 (96)
T ss_dssp             TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred             CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence            38899 699999999999999999999999999999985

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=98.88  E-value=5e-09  Score=63.53  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=36.1

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus         9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~   46 (76)
T 3a9j_A            9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   46 (76)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence            48899999999999999999999999999999999985

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=98.88  E-value=4.6e-09  Score=74.04  Aligned_cols=55  Identities=24%  Similarity=0.419  Sum_probs=43.7

Q ss_pred             HHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         32 VFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        32 ~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+....+. .+.|.|..          ++|++++|+|++++||++||++|++.+|+|+++|||+|+
T Consensus        12 ~~~~~~~~-~m~i~Vk~----------~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~   66 (172)
T 3u30_A           12 SGLVPRGS-HMQIFVKT----------LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   66 (172)
T ss_dssp             -------C-CEEEEEEE----------TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCCCCC-cEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence            34445556 78888874          359999999999999999999999999999999999985

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.85  E-value=7.5e-09  Score=71.71  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus        89 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~  127 (159)
T 3rt3_B           89 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE  127 (159)
T ss_dssp             TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence            469999999999999999999999999999999999996

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=98.84  E-value=4.5e-09  Score=68.23  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      +.++...+.+++++||++||+||++.+|||+++|||+|
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~   49 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQL   49 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence            34667889999999999999999999999999999997

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=98.84  E-value=7.2e-09  Score=66.39  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=36.8

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus         9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~   47 (96)
T 3k9o_B            9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   47 (96)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence            358899999999999999999999999999999999985

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.84  E-value=6.8e-09  Score=67.53  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|.|...+..         ..++++|++++||++||++|++.+|||+++|||+|.
T Consensus         7 ~v~l~I~~~~~~---------~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~   54 (95)
T 1v6e_A            7 GVMVFISSSLNS---------FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY   54 (95)
T ss_dssp             CEEEEEEETTSS---------SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred             EEEEEEEECCCC---------eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence            478888874321         468899999999999999999999999999999985

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=98.84  E-value=7.4e-09  Score=69.82  Aligned_cols=39  Identities=31%  Similarity=0.588  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++.+|+|+++|||+|+
T Consensus        17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   55 (114)
T 2kdi_A           17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA   55 (114)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence            569999999999999999999999999999999999985

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.83  E-value=2.5e-09  Score=71.13  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.|+|++++||++||++|++++|+|+++|||+|+
T Consensus         9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   47 (106)
T 3m62_B            9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS   47 (106)
T ss_dssp             TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence            469999999999999999999999999999999999996

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.83  E-value=2.7e-09  Score=69.67  Aligned_cols=46  Identities=24%  Similarity=0.443  Sum_probs=40.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++|+|..           +|+++.|+|++++||++||++|++.+|||+++|||+|.
T Consensus        17 ~~~i~Vk~-----------~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~   62 (95)
T 1v86_A           17 LVDLKIIW-----------NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK   62 (95)
T ss_dssp             CEEEEEEE-----------TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred             eEEEEEEE-----------CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence            46666653           37899999999999999999999999999999999984

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=98.82  E-value=3.6e-09  Score=68.26  Aligned_cols=36  Identities=33%  Similarity=0.441  Sum_probs=34.7

Q ss_pred             cCcEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         60 NGQTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        60 ~Gqti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      +|++++| +|++++||++||++|++++|||+++|||+
T Consensus        15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi   51 (90)
T 1v5t_A           15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL   51 (90)
T ss_dssp             TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence            4889999 99999999999999999999999999999

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.82  E-value=9.7e-09  Score=67.99  Aligned_cols=47  Identities=19%  Similarity=0.396  Sum_probs=42.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|+..          +|+++.++|..++||++||++|++++|+|+++|||+|+
T Consensus        23 ~m~I~Vk~~----------~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   69 (106)
T 1ttn_A           23 ECQLRLRLS----------TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS   69 (106)
T ss_dssp             SEEEEEEET----------TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred             eEEEEEEcC----------CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence            577888754          48999999999999999999999999999999999985

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=98.80  E-value=1.1e-08  Score=66.26  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=36.2

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus         9 ~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~   46 (98)
T 1yx5_B            9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   46 (98)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence            48899999999999999999999999999999999985

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=98.80  E-value=1.4e-08  Score=68.01  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.|+|.+++||+.||++|++++|+|+++|||+|+
T Consensus        43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   81 (111)
T 3vdz_A           43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   81 (111)
T ss_dssp             SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence            358999999999999999999999999999999999985

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=98.80  E-value=5e-09  Score=72.58  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             Cc-EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQ-TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gq-ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+ +++|+|.+++||++||++|++++|||+++|||+|+
T Consensus        10 ~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~   47 (118)
T 2fnj_B           10 HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD   47 (118)
T ss_dssp             BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence            54 69999999999999999999999999999999986

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.79  E-value=1.6e-08  Score=69.55  Aligned_cols=47  Identities=11%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH------HhCC--CCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD------LIGM--PAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e------~~GI--P~~kQkL~~~   97 (99)
                      .+.|+|..          ++|++++|+|++++||++||++|++      ++|+  |+++|||+|+
T Consensus        16 ~m~I~vKt----------l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~   70 (116)
T 1wgh_A           16 MINLRLIL----------VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ   70 (116)
T ss_dssp             SEEEEEEC----------SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred             eEEEEEEe----------CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence            67777774          4589999999999999999999999      6785  6999999996

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.79  E-value=1.2e-08  Score=65.74  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus        26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~   62 (96)
T 1wx8_A           26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT   62 (96)
T ss_dssp             SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            7799999999999999999999999999999999985

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=98.77  E-value=1.2e-08  Score=67.92  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CCCceEEEEEeCCCCCCCCCcccCcEEEE--EecCCccHHHHHHHH-HHHhCCCCCceEEEee
Q psy10057         38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSL--SLDLRTSVTALKSQI-HDLIGMPAGKQKLHLD   97 (99)
Q Consensus        38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l--~v~~tdTV~~LK~kI-~e~~GIP~~kQkL~~~   97 (99)
                      ++ .+.|.|...          +|+++++  +|++++||+.||++| ++..|+|+++|||+|+
T Consensus        17 ~~-~m~I~VKtl----------~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~   68 (98)
T 4a20_A           17 NA-AVHLTLKKI----------QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK   68 (98)
T ss_dssp             -C-CEEEEEEEC----------SSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred             CC-CEEEEEEcC----------CCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence            44 688888754          5777666  566999999999999 8888999999999996

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=98.76  E-value=7.9e-09  Score=71.77  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..++.++|.+++||.+||++|++++|||+++|||+|+
T Consensus        11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~   47 (118)
T 4ajy_B           11 KTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD   47 (118)
T ss_dssp             TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence            3489999999999999999999999999999999986

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=98.76  E-value=2.4e-08  Score=67.97  Aligned_cols=48  Identities=10%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|.|...+..         ..++++|++++||++||++|++.+|||+++|||+|.
T Consensus         6 ~v~l~V~~~~~~---------~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~   53 (122)
T 1t0y_A            6 VYDLEITTNATD---------FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF   53 (122)
T ss_dssp             EEEEEEEESSCC---------SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred             EEEEEEEECCCC---------ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence            588888874321         368899999999999999999999999999999985

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.75  E-value=1.3e-08  Score=65.98  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=36.0

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHH---hCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDL---IGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~---~GIP~~kQkL~~~   97 (99)
                      +|+++.++|++++||++||++|++.   +|+|+++|||+|+
T Consensus         9 ~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~   49 (95)
T 1uel_A            9 QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA   49 (95)
T ss_dssp             TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence            5889999999999999999999999   8999999999985

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=98.74  E-value=1e-08  Score=66.45  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus        27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   63 (93)
T 2l7r_A           27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA   63 (93)
T ss_dssp             SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence            6799999999999999999999999999999999985

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.74  E-value=2.4e-08  Score=65.77  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+ +.++|++++||++||++|++.+|+|+++|||+|+
T Consensus        22 ~m~I~Vk~~----------~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   67 (100)
T 1yqb_A           22 LIKVTVKTP----------KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA   67 (100)
T ss_dssp             EEEEEEECS----------SCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             eEEEEEEcC----------CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence            577777753          365 6899999999999999999999999999999985

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.73  E-value=3.3e-08  Score=63.31  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             CcEEEEEecCC-----ccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLR-----TSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~t-----dTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+++.++|+++     +||++||++|++.+|+|+++|||+|.
T Consensus        16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~   57 (92)
T 1wxv_A           16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK   57 (92)
T ss_dssp             SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred             CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence            67889999985     99999999999999999999999985

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=98.72  E-value=2.6e-08  Score=70.19  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|.+++||++||++|++++|||+++|||+|+
T Consensus       104 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~  142 (172)
T 3u30_A          104 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA  142 (172)
T ss_dssp             SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred             ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence            569999999999999999999999999999999999985

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.72  E-value=1.4e-08  Score=70.34  Aligned_cols=38  Identities=39%  Similarity=0.490  Sum_probs=36.5

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE-e
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH-L   96 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~-~   96 (99)
                      ++|++++++|++++||++||++|++.+|+|+++|||+ |
T Consensus        10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~   48 (159)
T 3rt3_B           10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH   48 (159)
T ss_dssp             TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEc
Confidence            4699999999999999999999999999999999999 7

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=98.72  E-value=2.2e-08  Score=69.46  Aligned_cols=47  Identities=11%  Similarity=0.177  Sum_probs=41.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH------HhCCC--CCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD------LIGMP--AGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e------~~GIP--~~kQkL~~~   97 (99)
                      .+.|+|...          +|++++|+|++++||++||++|++      ++|+|  +++|||+|+
T Consensus        17 ~m~I~vktl----------~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~   71 (125)
T 2gow_A           17 MINLRLILV----------SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ   71 (125)
T ss_dssp             CEEEEEECT----------TSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred             eEEEEEEeC----------CCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence            477777754          488999999999999999999999      78984  899999996

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.70  E-value=5.1e-08  Score=66.91  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=41.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...           |++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus        32 ~m~I~Vk~~-----------g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   77 (125)
T 1j8c_A           32 IIKVTVKTP-----------KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA   77 (125)
T ss_dssp             CEEEEEECS-----------SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred             cEEEEEEeC-----------CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence            588888752           6689999999999999999999999999999999985

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.69  E-value=6.1e-09  Score=68.88  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++.++|++++||++||++|++++|+|+++|||+|+
T Consensus        36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   73 (101)
T 3m63_B           36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS   73 (101)
T ss_dssp             SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence            48899999999999999999999999999999999996

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.14  E-value=2e-09  Score=66.09  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.++|++++||++||++|++.+|+|+++|||+|+
T Consensus         8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~   46 (76)
T 3b1l_X            8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA   46 (76)
Confidence            358899999999999999999999999999999999986

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=98.68  E-value=2.4e-08  Score=71.55  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=37.2

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   46 (169)
T 3l0w_B            8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA   46 (169)
T ss_dssp             TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence            469999999999999999999999999999999999986

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.67  E-value=2.4e-09  Score=79.37  Aligned_cols=39  Identities=36%  Similarity=0.387  Sum_probs=0.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+|++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus         8 L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~   46 (189)
T 2xzm_9            8 LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN   46 (189)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence            569999999999999999999999999999999999996

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=6.2e-08  Score=63.82  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|...          +|+ +.|+|+.++||++||++|++++||++++|||+|+
T Consensus        17 ~m~I~Vk~~----------~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~   62 (106)
T 1wx7_A           17 LIKVTVKTP----------KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA   62 (106)
T ss_dssp             EEEEEEECS----------SCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred             eEEEEEEeC----------CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence            466777653          355 6899999999999999999999999999999985

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.65  E-value=7.7e-08  Score=65.09  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.++|.+++||+.||++|++++|+|+++|||+|+
T Consensus        84 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~  122 (152)
T 3b08_A           84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA  122 (152)
T ss_dssp             SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence            468999999999999999999999999999999999985

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.64  E-value=2.2e-08  Score=67.70  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC---------------CceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA---------------GKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~---------------~kQkL~~~   97 (99)
                      .+.|+|.          +|+|++++|+|++++||++||++|++++|+|+               ++|+|+|+
T Consensus         7 ~M~I~Vk----------~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~   68 (105)
T 1v2y_A            7 GMTVRVC----------KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA   68 (105)
T ss_dssp             SEEEEEE----------CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS
T ss_pred             cEEEEEE----------ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC
Confidence            4667776          47799999999999999999999999999988               45699986

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=98.61  E-value=3.5e-08  Score=72.63  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=37.2

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|++++||++||++|++.+|||+++|||+|+
T Consensus       113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~  151 (189)
T 3q3f_A          113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA  151 (189)
T ss_dssp             TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence            469999999999999999999999999999999999986

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.60  E-value=9.7e-08  Score=64.61  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=36.2

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|++++++|++++||++||++|++.+|+|+++|+|+|+
T Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~   46 (152)
T 3b08_A            9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   46 (152)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence            48899999999999999999999999999999999985

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.58  E-value=3.8e-08  Score=68.80  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=41.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEE-EEEecCCccHHHHHHHH-----HHHhCCCC--CceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTL-SLSLDLRTSVTALKSQI-----HDLIGMPA--GKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti-~l~v~~tdTV~~LK~kI-----~e~~GIP~--~kQkL~~~   97 (99)
                      .+.|+|...          +|+.+ .+++++++||++||++|     ++++|+|+  ++|||+|+
T Consensus        16 ~~~i~~kt~----------~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~   70 (126)
T 1se9_A           16 QLEIKFRLT----------DGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA   70 (126)
T ss_dssp             CEEEEEEET----------TSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred             cEEEEEEEC----------CCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence            678888864          58788 79999999999999999     67789997  89999996

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.57  E-value=5.6e-08  Score=62.00  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=37.7

Q ss_pred             EEEEEeCCCCCCCCCcccCcEEEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         43 TFNVVVPNMTDKPEWKLNGQTLSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        43 ~i~V~~P~~~~k~ewkL~Gqti~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+.+          +|+.+ ++ |+.++||++||++|++++|||+++|+|.|+
T Consensus         2 ~i~vr~~----------~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~   46 (86)
T 2kzr_A            2 RVRCKAK----------GGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG   46 (86)
T ss_dssp             CEEEEET----------TEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred             EEEEEcC----------CCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence            4667765          37655 76 999999999999999999999999999986

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=98.56  E-value=7.5e-09  Score=70.70  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=0.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|++++||++||++|++.+|||+++|+|+|+
T Consensus         8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   46 (128)
T 3u5e_m            8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA   46 (128)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence            469999999999999999999999999999999999986

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.50  E-value=1.6e-07  Score=62.42  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=38.7

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEec-CCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLD-LRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~-~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.|+|+.+          +|+. .|+|+ +++||++||++|++++|||++.|+|+|.
T Consensus         8 M~irvrs~----------~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~   53 (107)
T 1wf9_A            8 TMLRVRSR----------DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN   53 (107)
T ss_dssp             EEEEEECS----------SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred             EEEEEECC----------CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence            56777754          4755 78999 9999999999999999999999999764

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=98.50  E-value=4.9e-08  Score=76.63  Aligned_cols=61  Identities=21%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             CCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         26 SLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        26 ~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++.|-......++ .+.|.|+..          +|+++.++|++++||++||++|++++|||+++|||+|+
T Consensus       219 ~llvE~~~A~~~~~-~MqI~VKtl----------~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~  279 (307)
T 3ai5_A          219 MVLLEFVTAAGITG-SMQIFVKTL----------TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA  279 (307)
T ss_dssp             EEEEEEEEEESSCC-CEEEEEECT----------TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             eeeeeehhccCCCC-eEEEEEEeC----------CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence            34444444444556 677777753          58899999999999999999999999999999999985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.50  E-value=1.2e-07  Score=74.17  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      +|++++|+|++++||++||++|++.+|||+++|||+
T Consensus        13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi   48 (320)
T 3shq_A           13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL   48 (320)
T ss_dssp             TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence            599999999999999999999999999999999998

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=2.7e-07  Score=64.17  Aligned_cols=47  Identities=26%  Similarity=0.495  Sum_probs=42.8

Q ss_pred             ceEEEEE-eCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVV-VPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~-~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++|+|. +|+          |+.++++++++.||++||+.|++..|+|++.|||+|+
T Consensus        15 ~itvkv~l~~~----------~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~   62 (118)
T 2daf_A           15 LATVKVVLIPV----------GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS   62 (118)
T ss_dssp             CEEEEEEETTT----------CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred             cEEEEEEEcCC----------CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence            5888887 553          6799999999999999999999999999999999996

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=98.48  E-value=1.6e-08  Score=72.05  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=0.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.|+|++++||++||++|++.+|||+++|||+|+
T Consensus         8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~   46 (152)
T 3u5c_f            8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA   46 (152)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence            468999999999999999999999999999999999986

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.44  E-value=2.9e-07  Score=61.01  Aligned_cols=50  Identities=20%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEe--------cCC-ccHHHHHHHHHHHh--CCCCCc-eEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSL--------DLR-TSVTALKSQIHDLI--GMPAGK-QKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v--------~~t-dTV~~LK~kI~e~~--GIP~~k-QkL~~~   97 (99)
                      .+.|.|...+.+.       +++++|+|        .++ +||+.||++|++++  |+|+++ |||+|.
T Consensus        12 ~~~i~Vk~~~~~~-------~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~   73 (107)
T 1x1m_A           12 DWHLAVKLADQPL-------APKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC   73 (107)
T ss_dssp             SCCEEEEETTCTT-------SCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred             ceEEEEEeCCCCC-------ccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence            4777887654210       16788884        444 99999999999999  999999 999985

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.5e-07  Score=61.04  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=32.9

Q ss_pred             cCcEE--EE-EecCCccHHHHHHHHHHH-hCCCCCceEEEee
Q psy10057         60 NGQTL--SL-SLDLRTSVTALKSQIHDL-IGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti--~l-~v~~tdTV~~LK~kI~e~-~GIP~~kQkL~~~   97 (99)
                      .|+..  +| +|++++||++||++|++. .|+++++|||+|.
T Consensus        19 ~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~   60 (88)
T 2dzj_A           19 KTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD   60 (88)
T ss_dssp             SSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred             CCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence            35443  68 999999999999999995 8999999999974

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.41  E-value=3.3e-07  Score=61.38  Aligned_cols=39  Identities=8%  Similarity=0.059  Sum_probs=36.6

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV   98 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~   98 (99)
                      .++.+++.+.+++||..+|++|++++|||+.+|+|+|+.
T Consensus        22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg   60 (94)
T 4efo_A           22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG   60 (94)
T ss_dssp             TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred             cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence            378999999999999999999999999999999999974

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.33  E-value=8.8e-07  Score=56.86  Aligned_cols=44  Identities=18%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|..          ++|+.+.++|++++||++||++|++++   +++|||+|.
T Consensus         7 ~m~i~Vk~----------~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~   50 (95)
T 1wia_A            7 GINVRLKF----------LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ   50 (95)
T ss_dssp             SEEEEEEE----------TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEET
T ss_pred             eEEEEEEe----------CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEEC
Confidence            57777764          358899999999999999999999998   999999985

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.24  E-value=2.5e-06  Score=56.04  Aligned_cols=47  Identities=13%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+-          .+|+.+.+.|..+++++.|+++++++.|+++++|||+|+
T Consensus         7 ~i~ikVk~----------~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd   53 (94)
T 2io1_B            7 HINLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   53 (94)
T ss_dssp             EEEEEEEC----------TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             eEEEEEEC----------CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence            56777763          358899999999999999999999999999999999996

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.19  E-value=1e-06  Score=70.40  Aligned_cols=47  Identities=28%  Similarity=0.372  Sum_probs=41.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHH---HhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHD---LIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e---~~GIP~~kQkL~~~   97 (99)
                      .+.|.|+.          ++|++++|+|..++||++||.+|++   ++|||+++|||+|.
T Consensus         7 ~M~I~VKt----------l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~   56 (368)
T 1oqy_A            7 AVTITLKT----------LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA   56 (368)
T ss_dssp             CCCEEEEE----------TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred             eEEEEEEe----------CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence            46666764          3589999999999999999999999   57899999999996

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.16  E-value=6.2e-06  Score=51.16  Aligned_cols=46  Identities=13%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+|+|+-          .+|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus         2 i~lkV~~----------~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd   47 (72)
T 1wm3_A            2 INLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   47 (72)
T ss_dssp             EEEEEEC----------TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred             EEEEEEC----------CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence            5666663          358899999999999999999999999999999999996

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.07  E-value=1.1e-05  Score=52.84  Aligned_cols=47  Identities=13%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+..          +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus         5 ~i~ikVk~~----------~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd   51 (91)
T 2io0_B            5 HINLKVAGQ----------DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   51 (91)
T ss_dssp             EEEEEEECT----------TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET
T ss_pred             eEEEEEECC----------CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence            577777742          48899999999999999999999999999999999996

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.04  E-value=1.8e-05  Score=50.02  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=42.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCc-EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQ-TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gq-ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+..          +|+ .+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus         7 ~i~ikV~~~----------~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd   54 (79)
T 3a4r_A            7 ELRLRVQGK----------EKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD   54 (79)
T ss_dssp             CEEEEEECS----------STTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred             EEEEEEEeC----------CCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence            577777743          485 89999999999999999999999999999999996

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.02  E-value=1.7e-05  Score=51.73  Aligned_cols=47  Identities=13%  Similarity=0.325  Sum_probs=42.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+.          .+|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus        17 ~i~ikV~~----------~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd   63 (93)
T 2d07_B           17 HINLKVAG----------QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   63 (93)
T ss_dssp             EEEEEEEC----------TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             eEEEEEEC----------CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence            57777773          248899999999999999999999999999999999996

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=97.91  E-value=3.4e-05  Score=52.34  Aligned_cols=47  Identities=19%  Similarity=0.302  Sum_probs=43.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+..          +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus        26 ~I~IkVk~~----------~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd   72 (110)
T 2k8h_A           26 LVAVKVVNA----------DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD   72 (110)
T ss_dssp             CEEEEEEET----------TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred             eEEEEEECC----------CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence            688888854          48899999999999999999999999999999999996

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.89  E-value=3.2e-05  Score=51.80  Aligned_cols=47  Identities=13%  Similarity=0.335  Sum_probs=42.8

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+..          +|+.+.+.|..+++++.|++.++++.|++++.|||+|+
T Consensus        24 ~I~IkVk~~----------~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd   70 (104)
T 1wz0_A           24 HINLKVAGQ----------DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   70 (104)
T ss_dssp             CEEEEEECS----------SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS
T ss_pred             eEEEEEECC----------CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence            688888843          48899999999999999999999999999999999996

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=97.79  E-value=4.8e-05  Score=51.32  Aligned_cols=46  Identities=11%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+-           +|+.+.+.|..+++++.|++.++++.|+++++|||+|+
T Consensus        31 ~I~IkV~~-----------~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd   76 (106)
T 2eke_C           31 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   76 (106)
T ss_dssp             EEEEEEEC-----------SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             eEEEEEec-----------CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence            57777763           28899999999999999999999999999999999996

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.28  E-value=0.00014  Score=46.27  Aligned_cols=46  Identities=11%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++.|+|+-|+          | +..|+|+.++||++|+++|++.++++.+.|.|.++
T Consensus         4 ~m~lRvrs~~----------G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~   49 (80)
T 2pjh_A            4 SIIIRVQSPD----------G-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYIN   49 (80)
T ss_dssp             CCCCEEECSS----------E-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCS
T ss_pred             cEEEEEECCC----------C-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEec
Confidence            4667888774          4 67788999999999999999999999999887664

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=97.06  E-value=0.0017  Score=44.48  Aligned_cols=47  Identities=13%  Similarity=0.339  Sum_probs=42.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|+..          +|+.+.+.|..+++++.|++.++++.|++.+++||.|+
T Consensus        40 ~I~LKV~~q----------dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD   86 (115)
T 3kyd_D           40 YIKLKVIGQ----------DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE   86 (115)
T ss_dssp             EEEEEEECT----------TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET
T ss_pred             eEEEEEEcC----------CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC
Confidence            688888743          48899999999999999999999999999999999996

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.003  Score=46.81  Aligned_cols=46  Identities=11%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|+.           +|+.+.+.+..+++++.|+..++++.|++.+++||.|+
T Consensus        29 ~I~LkV~~-----------~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd   74 (200)
T 3pge_A           29 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   74 (200)
T ss_dssp             CEEEEEEC-----------SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET
T ss_pred             eEEEEEec-----------CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC
Confidence            58888851           38899999999999999999999999999999999996

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=96.38  E-value=0.011  Score=38.41  Aligned_cols=45  Identities=11%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +++|+|++-            -+|.|.|+...+.++|+++|.++++++++.-+|+|.
T Consensus         5 ~~~VKV~~~------------~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk   49 (83)
T 1oey_A            5 AYTLKVHYK------------YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (83)
T ss_dssp             CEEEEEESS------------SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             cEEEEEEEE------------EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence            688999874            299999999999999999999999999999999984

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=96.31  E-value=0.0085  Score=43.77  Aligned_cols=47  Identities=11%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV   98 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~   98 (99)
                      .|+|+|+.           +|+.+.+.+..++++..|++..+++.|++.+++||.|+-
T Consensus        21 ~i~ikv~~-----------~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG   67 (209)
T 3uf8_A           21 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG   67 (209)
T ss_dssp             EEEEEEEC-----------SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT
T ss_pred             cEEEEEEc-----------CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC
Confidence            57888872           277899999999999999999999999999999999963

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0084  Score=45.02  Aligned_cols=46  Identities=11%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|+  .         +|+.+.+.|..+++++.|++.+.++.|++.+++||+|+
T Consensus        57 ~InLKVk--~---------dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD  102 (207)
T 3tix_A           57 HINLKVS--D---------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD  102 (207)
T ss_dssp             EEEEEEE--C---------SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET
T ss_pred             cEEEEEe--c---------CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence            5777775  1         38899999999999999999999999999999999996

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=95.76  E-value=0.017  Score=40.23  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC
Q psy10057         43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG   90 (99)
Q Consensus        43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~   90 (99)
                      .|+|++|+          |+..++.|+-+.+|+.++..|+.+.||+..
T Consensus        13 ~LkV~llD----------g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~   50 (128)
T 2kc2_A           13 PLKIRMLD----------GTVKTIMVDDSKTVTDMLMTICARIGITNH   50 (128)
T ss_dssp             EEEEECTT----------SCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred             cEEEEcCC----------CCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence            57888874          889999999999999999999999999855

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=95.57  E-value=0.071  Score=33.32  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         39 TPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        39 g~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .+..+|+|++|+          |+.+.-.+..++||.+|.+-|.. .|.+....+|.
T Consensus         5 ~~~~~i~iRlpd----------G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~   50 (84)
T 3qx1_A            5 EPVSKLRIRTPS----------GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLL   50 (84)
T ss_dssp             CCEEEEEEECTT----------SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEE
T ss_pred             CCeEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEE
Confidence            346899999995          88888899999999999999988 67776666665

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=94.89  E-value=0.13  Score=34.05  Aligned_cols=45  Identities=11%  Similarity=0.222  Sum_probs=38.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .++|+|++|+          |+.+.-.+..++||++|++-|....+.+...-.|.
T Consensus        13 ~t~IqIRlpd----------G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~   57 (109)
T 2dzk_A           13 IARIQFRLPD----------GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA   57 (109)
T ss_dssp             CEEEEEECSS----------SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE
T ss_pred             cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE
Confidence            6999999995          88999999999999999999999877665554443

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.26  E-value=0.09  Score=35.86  Aligned_cols=43  Identities=19%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK   91 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k   91 (99)
                      +++|+|..+..        .++.+.+.|-..|||+.+|+||-+..  |.|.++
T Consensus        11 ~ltl~v~~~~~--------~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~   55 (111)
T 4e71_A           11 PLTVSVIVQDE--------GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSC   55 (111)
T ss_dssp             EEEEEEEETTS--------CCCCEEEEEETTCBHHHHHHHHHHHHTC------
T ss_pred             EEEEEEEecCC--------CCCceeeeeeccCcHHHHHHHHHHHHHcCCcccc
Confidence            67888877642        25678889999999999999999986  777764

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=94.09  E-value=0.068  Score=36.75  Aligned_cols=35  Identities=11%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..++-|.-+.+++.||+.|.+.+|+|+++|||.+-
T Consensus        57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            56788999999999999999999999999999753

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=93.97  E-value=0.17  Score=34.33  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .++|+|++|+          |..+.-.+..++||..|.+-|... |.+...-.|.
T Consensus        43 ~t~IqIRlPd----------G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~   86 (124)
T 1wj4_A           43 KAQLMLRYPD----------GKREQITLPEQAKLLALVKHVQSK-GYPNERFELL   86 (124)
T ss_dssp             EEEEEEECTT----------SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE
T ss_pred             cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe
Confidence            7999999995          888999999999999999999876 6665555554

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=93.87  E-value=0.26  Score=32.37  Aligned_cols=47  Identities=23%  Similarity=0.368  Sum_probs=40.8

Q ss_pred             ceEEEEEeCCCCCCCCCcccC-cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNG-QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~G-qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+-.+          | +.+.+.|..+++++.|.....++.|++.+.-||.|+
T Consensus        25 ~I~LkV~~~d----------g~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD   72 (97)
T 2jxx_A           25 QLQLRVQGKE----------KHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD   72 (97)
T ss_dssp             EEEEEEEESS----------SSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET
T ss_pred             eEEEEEEcCC----------CCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence            5777777542          6 489999999999999999999999999999999885

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=93.86  E-value=0.011  Score=45.03  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+.+.+.|..+++++.|++.++++.|++.+++|+.|+
T Consensus        29 dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD   66 (227)
T 3v7o_A           29 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   66 (227)
T ss_dssp             --------------------------------------
T ss_pred             CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEEC
Confidence            48899999999999999999999999999999999996

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=93.84  E-value=0.11  Score=36.78  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK   91 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k   91 (99)
                      +++|+|.++...+-    -..+.+.+.|--.|||+.+|+||-+..  |+|.++
T Consensus        24 ~ltl~v~~~~~~~~----~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySq   72 (138)
T 2r2o_A           24 PLTLNALLAVGPGA----GEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQ   72 (138)
T ss_dssp             EEEEEEEEC-----------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGG
T ss_pred             EEEEEEEccCCccc----ccCCceeEEEeccccHHHHHHHHHHHHHcCCcccc
Confidence            78888887643210    024679999999999999999999997  677654

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.75  E-value=0.094  Score=36.02  Aligned_cols=44  Identities=20%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK   91 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k   91 (99)
                      +++|+|..+...       ++..+.+.|-..|||+.+|+||-+..  |+|.++
T Consensus        13 ~ltl~v~~~~~~-------~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~   58 (117)
T 4e74_A           13 TLVLSCVSPDNA-------NSPEVPVKILNCDTITQVKEKILDAIFKNVPCSH   58 (117)
T ss_dssp             EEEEEECCC-----------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGG
T ss_pred             EEEEEEEccCCC-------CCCceEeeeecCCchHHHHHHHHHHHhcCCCccc
Confidence            678887665421       35678889999999999999999986  777764

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=92.30  E-value=0.27  Score=34.29  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAG   90 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~   90 (99)
                      +++|+|.+++.        ++..+.+.|-..|||+.+|+||-+..  |+|.+
T Consensus         4 ~ltl~~~~~~~--------~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S   47 (127)
T 3h6n_A            4 PRNLNVSFQGC--------GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYS   47 (127)
T ss_dssp             EEEEEEEEETS--------CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGG
T ss_pred             EEEEEEEecCC--------CCCceeeeeeccCchhhhhHHHHHHHhccCCcc
Confidence            57888877432        35568889989999999999999986  67765

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=91.68  E-value=0.37  Score=32.64  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=36.3

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh-CCCCCceEEE
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI-GMPAGKQKLH   95 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~-GIP~~kQkL~   95 (99)
                      +..+|+|++|+          |+.+.-.+..++||++|++-|.... +.....-.|.
T Consensus        51 ~~t~IqIRlpd----------G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~   97 (127)
T 1s3s_G           51 PTTNIQIRLAD----------GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLM   97 (127)
T ss_dssp             CCCCEEEEETT----------TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEE
T ss_pred             CcEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEe
Confidence            37999999995          8889999999999999999998863 3444444443

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=91.46  E-value=0.55  Score=32.68  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=35.5

Q ss_pred             ceEEEEEe---CCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh----CCCCCc
Q psy10057         41 NVTFNVVV---PNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI----GMPAGK   91 (99)
Q Consensus        41 ~v~i~V~~---P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~----GIP~~k   91 (99)
                      +++|+|.+   |...+    .-..+.+.+.|-..|||+.+|+||-+..    |.|.+.
T Consensus        19 tLtL~vv~~~~~~~~~----~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~   72 (126)
T 3kuz_A           19 TVALNVVFEKIPENES----ADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGL   72 (126)
T ss_dssp             EEEEEEEECCCTTSSC----SCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             EEEEEEEeeccCCCcC----cCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCC
Confidence            68999988   54321    1134678889999999999999998874    787764

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=91.46  E-value=0.71  Score=30.24  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      .++|+|++|+          |+.+.-.+..++||..|.+-|... +.....-+|.
T Consensus        23 ~~~IqiRlpd----------G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~   66 (109)
T 2cr5_A           23 VVTVALRCPN----------GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLS   66 (109)
T ss_dssp             EEEEEEECTT----------SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEE
T ss_pred             cEEEEEECCC----------CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEE
Confidence            7999999995          888888999999999999999865 4444444443

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=89.33  E-value=0.6  Score=35.19  Aligned_cols=38  Identities=8%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV   98 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~   98 (99)
                      -....+.+....|+.+++++|++.+||+++.|.|.|..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~  358 (396)
T 4eut_A          321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG  358 (396)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSS
T ss_pred             ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcC
Confidence            45777888899999999999999999999999999864

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=89.32  E-value=0.07  Score=41.57  Aligned_cols=46  Identities=11%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|+-           +|+.+.+.+..+++++.|+....++.|++.+++|+.|+
T Consensus        30 ~i~lkv~~-----------~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~   75 (389)
T 4da1_A           30 HINLKVSD-----------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   75 (389)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cEEEEEec-----------CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence            57777752           27789999999999999999999999999999999986

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=88.46  E-value=0.087  Score=42.13  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+.+.+.|..+++++.|++.++++.|++.+.+|+.|+
T Consensus        30 g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd   66 (360)
T 3ix6_A           30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   66 (360)
T ss_dssp             -------------------------------------
T ss_pred             CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence            7799999999999999999999999999999999986

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=88.40  E-value=0.54  Score=38.59  Aligned_cols=36  Identities=11%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ...++.|.-++|++.||++|.+.+|+|+++|||..-
T Consensus        36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~   71 (530)
T 2ylm_A           36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   71 (530)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred             CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence            345789999999999999999999999999999753

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=87.51  E-value=3.6  Score=26.59  Aligned_cols=33  Identities=12%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK   91 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k   91 (99)
                      ++|..+.+.++++-+...|.++|.+..++..++
T Consensus        13 ~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~   45 (89)
T 1vd2_A           13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQ   45 (89)
T ss_dssp             SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence            457899999999999999999999999988665

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=86.40  E-value=1.6  Score=32.48  Aligned_cols=39  Identities=10%  Similarity=0.227  Sum_probs=34.6

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA   89 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~   89 (99)
                      .+++++|.+++          | ++.++++.++|+.+|=+.|.++.||.-
T Consensus        21 ~~~~~~V~lld----------g-~~~~~v~~~t~~~el~~~v~~~l~L~e   59 (314)
T 1h4r_A           21 KTFTVRIVTMD----------A-EMEFNCEMKWKGKDLFDLVCRTLGLRE   59 (314)
T ss_dssp             CEEEEEEECSS----------C-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred             CeeEEEEEeCC----------c-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence            38999999974          6 788999999999999999999999874

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=86.34  E-value=1.6  Score=32.02  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA   89 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~   89 (99)
                      +|+++|.+++          | ++.++++.++|+.+|=+.|.++.||.-
T Consensus         1 ~i~~~V~l~d----------~-~~~~~v~~~tt~~el~~~v~~~l~L~e   38 (294)
T 1ef1_A            1 TISVRVTTMD----------A-ELEFAIQPNTTGKQLFDQVVKTIGLRE   38 (294)
T ss_dssp             CEEEEEEETT----------E-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred             CEEEEEEECC----------c-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence            5889999974          5 678999999999999999999999864

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=86.31  E-value=1.9  Score=28.64  Aligned_cols=53  Identities=13%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc-----eEEEe
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK-----QKLHL   96 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k-----QkL~~   96 (99)
                      .|.|+|..-+...+   .-.+.+++|-|+.+-+..+|.+||.+++++..+.     -||.|
T Consensus         5 sikVKv~y~~~~~~---~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY   62 (98)
T 1q1o_A            5 SILFRISYNNNSNN---TSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY   62 (98)
T ss_dssp             CEEEEEEECSSCSS---CCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred             cEEEEEEecCcccc---cccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence            67777777543211   1225589999999999999999999999876333     36665

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=85.96  E-value=0.72  Score=35.36  Aligned_cols=49  Identities=14%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             HHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057         30 EQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA   89 (99)
Q Consensus        30 E~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~   89 (99)
                      ++.-|...+. ++.++|.+|+          |+...+.++.++|+.+|=+.|.++.||.-
T Consensus        75 ~~~~l~~~~~-~~~~~V~l~d----------g~~~~~~vd~~tt~~el~~~v~~~l~L~e  123 (371)
T 3ivf_A           75 NGDTMEYRKK-QRPLKIRMLD----------GTVKTIMVDDSKTVTDMLMTICARIGITN  123 (371)
T ss_dssp             TTCEEEEEEC-EEEEEEECTT----------SCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred             CCceeeccCc-eeEEEEECcC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence            4455667777 8999999985          77999999999999999999999999863

>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}

Probab=85.87  E-value=2  Score=28.86  Aligned_cols=38  Identities=16%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057         37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI   85 (99)
Q Consensus        37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~   85 (99)
                      .|. .|.|.+-+||          |=.+++++..+.|+++||+.+-++.
T Consensus        16 ~~~-~v~v~~LlPn----------Gi~i~l~~~~~~tl~eiK~~lw~eA   53 (108)
T 2v1y_A           16 MPP-RILVECLLPN----------GMIVTLECLREATLITIKHELFKEA   53 (108)
T ss_dssp             CCS-EEEEEEECTT----------SCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred             CCC-cEEEEEEcCc----------EEEEEEEeeccccHHHHHHHHHHHH
Confidence            456 8999999996          7899999999999999999887764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=85.37  E-value=0.6  Score=39.55  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEeec
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLDV   98 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~~   98 (99)
                      ++..++.+....|+.+|+.+|++.+||+.+.|.|++..
T Consensus       321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~  358 (676)
T 3qa8_A          321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQAS  358 (676)
T ss_dssp             SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSS
T ss_pred             cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence            56667889999999999999999999999999998764

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=84.29  E-value=1.9  Score=32.26  Aligned_cols=39  Identities=5%  Similarity=0.078  Sum_probs=35.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA   89 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~   89 (99)
                      .+.++|.+++          |+..+++|+.++|+.+|=+.|.++.||.-
T Consensus        17 ~~~~~V~lld----------gt~~~~~vd~~tt~~el~~~v~~~l~L~e   55 (296)
T 3qij_A           17 QGHCKVSLLD----------DTVYECVVEKHAKGQDLLKRVCEHLNLLE   55 (296)
T ss_dssp             CCEEEEECTT----------SCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred             eEEEEEEccC----------CCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence            6889999875          77999999999999999999999999863

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=82.90  E-value=3.6  Score=33.19  Aligned_cols=49  Identities=10%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             HHHHHhh-CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCC
Q psy10057         30 EQVFLSK-MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPA   89 (99)
Q Consensus        30 E~~fl~~-~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~   89 (99)
                      -.|+.+. +.. ++.++|.+++          |...++.++.++|+++|=+.|.++.||..
T Consensus       205 ~~Ei~a~~~~~-~~~~~V~l~d----------g~~~~~~v~~~tt~~el~~~v~~~lgL~e  254 (555)
T 3au4_A          205 RDEIEALIHRQ-EMTSTVYCHG----------GGSCKITINSHTTAGEVVEKLIRGLAMED  254 (555)
T ss_dssp             HHHHHHHHTTC-CEEEEEEETT----------SCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhCC-CcceEEEecC----------CCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence            3555553 444 7999999984          77899999999999999999999999975

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=82.67  E-value=2.2  Score=36.43  Aligned_cols=44  Identities=20%  Similarity=0.368  Sum_probs=34.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh--CCCCCc
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI--GMPAGK   91 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~--GIP~~k   91 (99)
                      +++|+|..|..       .+++.+.+.|--.|||+.+|+||-+..  |.|.++
T Consensus       233 ~ltL~v~~~~~-------~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~  278 (627)
T 3ig3_A          233 TLTLHCVCPES-------EGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQ  278 (627)
T ss_dssp             EEEEEEECTTT-------C--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGG
T ss_pred             eEEEEEeccCC-------CCCCceeeEeeccCcHHHHHHHHHHHHHcCCCccc
Confidence            68888876642       136789999999999999999999986  777654

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=82.28  E-value=4.7  Score=26.57  Aligned_cols=46  Identities=9%  Similarity=0.245  Sum_probs=41.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+.           +|..+.+.+-.++..+.|.+-..++.|+.++.-|+.|+
T Consensus        21 ~IniKV~~-----------~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD   66 (95)
T 2l76_A           21 LFPLKIRC-----------RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG   66 (95)
T ss_dssp             CEEEEEEC-----------SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET
T ss_pred             eEEEEEEc-----------CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEEC
Confidence            58888882           27899999999999999999999999999999999985

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=82.11  E-value=3  Score=27.25  Aligned_cols=46  Identities=13%  Similarity=0.229  Sum_probs=39.9

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+|.|-.|+          |+..++.|.++.++.+|=+.-.+++|+.+++=.|.|+
T Consensus        10 m~v~Vl~~n----------~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~   55 (90)
T 2al3_A           10 SAVSVLAPN----------GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ   55 (90)
T ss_dssp             CCEEEECTT----------SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred             cEEEEEcCC----------CcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC
Confidence            467888775          8899999999999999989999999999988877764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=80.35  E-value=3.7  Score=26.62  Aligned_cols=47  Identities=15%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCC-ceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAG-KQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~-kQkL~~~   97 (99)
                      -||+-.+--..+          -+.+.|.++.+|+.|=.....+.||+++ .-+|.|+
T Consensus         9 ~~~~~~~~~~~~----------dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD   56 (82)
T 3goe_A            9 LITLLLRSSKSE----------DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE   56 (82)
T ss_dssp             EEEEEEEESSSC----------CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred             HHHHhhhccCCC----------CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc
Confidence            466666654322          5788999999999999999999999999 9999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-14
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	3e-06
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	2e-05
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	0.003
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	0.004

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 1e-14
 Identities = 31/54 (57%), Positives = 37/54 (68%)

Query: 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH 95
          V+  V VPNM DK EWKLNGQ L  +L L   V+ +K +IH+  GMPAGKQKL 
Sbjct: 2  VSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ 55

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 18 GKKIRSEES-LIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTA 76
          G   + +ES L+PE  FL++   P  T  V  PN  D       GQ + +++   +    
Sbjct: 4  GSSGKFDESALVPEDQFLAQHPGP-ATIRVSKPNEND-------GQFMEITVQSLSENVG 55

Query: 77 -LKSQIHDLIGMPAGKQKLH 95
           LK +I   I +PA KQKL 
Sbjct: 56 SLKEKIAGEIQIPANKQKLS 75

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-05
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 35 SKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
          S  +   +T  +   N           Q L   L    +V  +K  +  L+ +P  +  L
Sbjct: 3  SGSSGQLLTLKIKCSNQ-------PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLL 55

Query: 95 H 95
           
Sbjct: 56 S 56

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.003
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD 97
          L G+T++L ++   ++  +K++I D  G+P  +Q+L   
Sbjct: 8  LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL 94
           T  V +P            +   L   L  +   L+S+I +  G+     K+
Sbjct: 16 ATIEVFLPPRL------KKDRKNLLETRLHITGRELRSKIAETFGLQENYIKI 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.83
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.81
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.16
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.15
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.13
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.12
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.11
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.09
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.09
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.09
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.08
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.05
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.04
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.01
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	98.99
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	98.98
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	98.94
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	98.94
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	98.93
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	98.9
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	98.88
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	98.87
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	98.86
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	98.81
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.77
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	98.73
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	98.68
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	98.66
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	98.57
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	98.52
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	98.35
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.3
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.08
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.01
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	97.3
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	96.97
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	95.3
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.14
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.23
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	93.33
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	92.36
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	88.64
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	86.26
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	85.81
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	85.13
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	81.68

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=7.4e-21  Score=128.77  Aligned_cols=69  Identities=33%  Similarity=0.477  Sum_probs=63.1

Q ss_pred             cCC-CCCCCcHHHHHhhCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecC-CccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         21 IRS-EESLIPEQVFLSKMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDL-RTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        21 ~k~-e~~L~pE~~fl~~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~-tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|. |++|+||++|+++||| +++|+|++|+..       +|++++|+|.+ +|||++||++|++++|||+++|||+|.
T Consensus         7 ~k~~~~~L~pE~~~l~~~~g-~~ti~V~v~~~~-------~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~   77 (111)
T d1we6a_           7 GKFDESALVPEDQFLAQHPG-PATIRVSKPNEN-------DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK   77 (111)
T ss_dssp             CSCCGGGCCCHHHHHHHCCS-CEEEEECCTTCS-------SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred             ccccccccCCHHHHHhhCCC-CEEEEEEcccCC-------CCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEe
Confidence            354 4689999999999999 899999999864       59999999975 999999999999999999999999996

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.1e-20  Score=119.58  Aligned_cols=57  Identities=54%  Similarity=0.898  Sum_probs=55.9

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ||||+|++|++++++||+|+|++++|+|++++||++||++|++++|+|+++|+|+|+
T Consensus         1 pvti~v~~p~~~~~~~~~L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~   57 (86)
T d1zkha1           1 PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE   57 (86)
T ss_dssp             CEEEEEECCCCSSSSSSSCSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred             CeEEEEEcCCCCcccccccCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeC
Confidence            699999999999999999999999999999999999999999999999999999996

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.4e-11  Score=73.84  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=42.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++.|.|+.          ++|++++++|.+++||++||++|++++|||+++|||+|+
T Consensus         3 ~~qi~Vk~----------~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~   49 (76)
T d1z2ma2           3 PLSILVRN----------NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE   49 (76)
T ss_dssp             CEEEEEEC----------TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CEEEEEEc----------CCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEEC
Confidence            46677764          459999999999999999999999999999999999996

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.5e-11  Score=75.41  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|+.+          +|++++|+|++++||.+||++|++++|||+++|||+|+
T Consensus         7 ~mqI~Vk~~----------~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~   53 (87)
T d1wh3a_           7 GIQVFVKNP----------DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ   53 (87)
T ss_dssp             SEEEEEEET----------TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred             cEEEEEECC----------CCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEee
Confidence            466777654          59999999999999999999999999999999999996

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.1e-11  Score=73.50  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=37.4

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~   46 (73)
T d1wx9a1           8 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ   46 (73)
T ss_dssp             TTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEET
T ss_pred             CCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence            569999999999999999999999999999999999996

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=3.3e-11  Score=74.04  Aligned_cols=39  Identities=18%  Similarity=0.488  Sum_probs=37.6

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|++++|+|+++|||+|+
T Consensus         8 ~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~   46 (73)
T d1bt0a_           8 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA   46 (73)
T ss_dssp             TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence            569999999999999999999999999999999999996

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.4e-11  Score=73.51  Aligned_cols=47  Identities=19%  Similarity=0.396  Sum_probs=43.2

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .+.|.|+..          +|++++|+|.+++||++||++|++++|||+++|||+|+
T Consensus         3 e~qi~Vk~~----------~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~   49 (80)
T d1ttna1           3 ECQLRLRLS----------TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS   49 (80)
T ss_dssp             SEEEEEEET----------TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred             eEEEEEEcC----------CCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEEC
Confidence            577888864          59999999999999999999999999999999999996

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-10  Score=76.66  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=49.3

Q ss_pred             hCCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         36 KMATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        36 ~~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +--| ..||+|.+|.-      .++|+++.|+|.+++||.+||++|++++|+|+++|||+|.
T Consensus        11 ~~tg-~ati~V~~~~~------~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~   65 (100)
T d1wjua_          11 RTTG-IATIEVFLPPR------LKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN   65 (100)
T ss_dssp             SCCC-EEEEEEECCTT------TCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred             cccc-eEEEEEEEeec------cCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEc
Confidence            3456 78999999864      3569999999999999999999999999999999999995

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.5e-11  Score=73.63  Aligned_cols=39  Identities=38%  Similarity=0.513  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+++.++|++++||++||++|++++|||+++|||+|.
T Consensus         8 l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~   46 (76)
T d1z2ma1           8 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH   46 (76)
T ss_dssp             SSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEc
Confidence            569999999999999999999999999999999999994

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.4e-10  Score=71.61  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=37.5

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|.+++||++||++|++++|+|+++|||+|+
T Consensus         9 ~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~   47 (73)
T d1m94a_           9 RLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKG   47 (73)
T ss_dssp             TTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESS
T ss_pred             CCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEE
Confidence            469999999999999999999999999999999999996

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=5.8e-11  Score=74.27  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=36.8

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|++++|+|++++||++||++|++++|||+++|||+|+
T Consensus        11 ~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~   48 (78)
T d2zeqa1          11 SSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFA   48 (78)
T ss_dssp             SSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEe
Confidence            59999999999999999999999999999999999996

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.1e-10  Score=70.55  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+.+.|+|++++||++||++|++.+|+|+++|||+|+
T Consensus        10 ~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~   46 (73)
T d2bwfa1          10 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS   46 (73)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEEC
Confidence            5678999999999999999999999999999999996

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=2.1e-10  Score=74.33  Aligned_cols=50  Identities=20%  Similarity=0.263  Sum_probs=46.3

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      -|+|+|.||+.       ++++.+++.|+.+.||+.||.+|+..+|||+++|||+|.
T Consensus         9 ~iti~i~~~~~-------~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~   58 (97)
T d1wjna_           9 LLTLKIKCSNQ-------PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE   58 (97)
T ss_dssp             EEEEEEEESSC-------SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred             eEEEEEEeCCC-------CCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEec
Confidence            58999999985       458899999999999999999999999999999999985

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=71.59  Aligned_cols=39  Identities=28%  Similarity=0.599  Sum_probs=37.5

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++++|++++||++||++|+++.|+|+++|||+|+
T Consensus         8 l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~   46 (76)
T d1ogwa_           8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA   46 (76)
T ss_dssp             TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEEC
Confidence            569999999999999999999999999999999999996

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.8e-10  Score=71.10  Aligned_cols=49  Identities=14%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|. .|.|.|+.+           |...+|+|.+++||++||++|++++|+|+++|||+|+
T Consensus         4 ~~~-~i~I~Vkt~-----------~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~   52 (84)
T d1yqba1           4 SPH-LIKVTVKTP-----------KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA   52 (84)
T ss_dssp             CTT-EEEEEEECS-----------SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             CCC-EEEEEEEcC-----------CCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEe
Confidence            344 566666543           4467999999999999999999999999999999996

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2e-09  Score=69.94  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=33.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         63 TLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        63 ti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..+|+|++++||++||++|++++|+|+++|||+|+
T Consensus        43 ~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~   77 (103)
T d1j8ca_          43 KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA   77 (103)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred             cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeee
Confidence            57899999999999999999999999999999996

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=5.1e-10  Score=73.48  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=44.9

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ..|+|.+.+-      +++|.+++|+|++++||++||++|++++|||+++|||+|+
T Consensus         8 m~itV~~~~~------~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~   57 (102)
T d1v5oa_           8 MLITVYCVRR------DLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM   57 (102)
T ss_dssp             EEEEEEECCC------CCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred             EEEEEEeccc------CCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeC
Confidence            5677777654      4789999999999999999999999999999999999996

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=3.8e-10  Score=74.19  Aligned_cols=39  Identities=18%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|++++|+|.+++||++||++|++++|+|+++|||+|+
T Consensus        36 ~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~   74 (100)
T d1uh6a_          36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW   74 (100)
T ss_dssp             SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred             CCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEE
Confidence            369999999999999999999999999999999999995

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.4e-10  Score=69.62  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=35.9

Q ss_pred             ccCc-EEEEE-ecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNGQ-TLSLS-LDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gq-ti~l~-v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++|+ +++++ +++++||++||++|++++|||+++|||+|+
T Consensus         8 l~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~   48 (76)
T d2faza1           8 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR   48 (76)
T ss_dssp             TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEe
Confidence            5685 89985 899999999999999999999999999996

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.5e-10  Score=68.79  Aligned_cols=39  Identities=31%  Similarity=0.448  Sum_probs=37.0

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhC---CCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIG---MPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~G---IP~~kQkL~~~   97 (99)
                      ++|++++|+|++++||++||++|+++.|   +|+++|||+|+
T Consensus        10 l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~   51 (77)
T d1oqya4          10 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA   51 (77)
T ss_dssp             TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred             CCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEEC
Confidence            5699999999999999999999999988   99999999996

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.7e-10  Score=69.19  Aligned_cols=39  Identities=15%  Similarity=0.417  Sum_probs=35.9

Q ss_pred             ccC-cEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         59 LNG-QTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        59 L~G-qti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++| +++++ +|++++||++||++|++++|||+++|||+|+
T Consensus         8 l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~   48 (76)
T d1wy8a1           8 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR   48 (76)
T ss_dssp             TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred             CCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEE
Confidence            567 58888 6999999999999999999999999999996

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=5e-10  Score=72.29  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+++.|+|++++||.+||++|++.+|||+++|||+|.
T Consensus        25 ~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~   62 (95)
T d1v86a_          25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK   62 (95)
T ss_dssp             TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEec
Confidence            59999999999999999999999999999999999985

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.2e-09  Score=69.84  Aligned_cols=39  Identities=36%  Similarity=0.503  Sum_probs=36.7

Q ss_pred             ccCcEEEEEecCCccHHHHHHHHHHHhC---CCCCceEEEee
Q psy10057         59 LNGQTLSLSLDLRTSVTALKSQIHDLIG---MPAGKQKLHLD   97 (99)
Q Consensus        59 L~Gqti~l~v~~tdTV~~LK~kI~e~~G---IP~~kQkL~~~   97 (99)
                      ++|++++|+|++++||++||++|++++|   +|+++|||+|+
T Consensus         8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~   49 (95)
T d1uela_           8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA   49 (95)
T ss_dssp             TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred             CCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEEC
Confidence            5699999999999999999999999986   89999999996

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=1.6e-09  Score=72.92  Aligned_cols=48  Identities=8%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHH--------HHHhCCCCCceEEEee
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQI--------HDLIGMPAGKQKLHLD   97 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI--------~e~~GIP~~kQkL~~~   97 (99)
                      ..|.|+|.+          ++|+++.|+|++++||+.||++|        +++.|+|+++|||+|.
T Consensus        15 ~~i~i~v~~----------l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~   70 (116)
T d1wgha_          15 DMINLRLIL----------VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ   70 (116)
T ss_dssp             SSEEEEEEC----------SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred             CeEEEEEEE----------cCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEEC
Confidence            368888887          45999999999999999999999        5778999999999996

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.3e-09  Score=69.04  Aligned_cols=49  Identities=31%  Similarity=0.272  Sum_probs=43.6

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhC--CCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIG--MPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~G--IP~~kQkL~~~   97 (99)
                      .|+|+|..|+..        +..++++|++++||..||++|++..|  +|+++|||+|.
T Consensus         7 ~i~l~Ik~~~~~--------~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~   57 (93)
T d1wgda_           7 GVTLLVKSPNQR--------HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS   57 (93)
T ss_dssp             CCEEEEECSSSS--------CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred             cEEEEEECCCCC--------ceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEEC
Confidence            589999998643        56799999999999999999999975  99999999996

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=3.7e-09  Score=68.21  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +|+.+.|+|++++||.+||++|++.+|||+++|||+|.
T Consensus        16 ~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~   53 (96)
T d1wgga_          16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK   53 (96)
T ss_dssp             TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred             CCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeec
Confidence            46667899999999999999999999999999999985

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=6.6e-09  Score=65.11  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             cEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         62 QTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        62 qti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ...+|+|++++||++||++|++++|+|+++|||+|.
T Consensus        20 ~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~   55 (83)
T d1wx8a1          20 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT   55 (83)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred             CcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEE
Confidence            356899999999999999999999999999999995

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4e-09  Score=69.78  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=35.2

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      ++++.|+|++++||.+||++|++++|||+++|||+|+
T Consensus        10 k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~   46 (103)
T d2c9wb1          10 KTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD   46 (103)
T ss_dssp             TEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEEC
Confidence            5689999999999999999999999999999999996

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=4.9e-09  Score=66.49  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             cCcEEEE-EecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         60 NGQTLSL-SLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        60 ~Gqti~l-~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      +|+.+.+ +|++++||++||++|++++|+|+++|||+|
T Consensus        15 ~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~   52 (90)
T d1v5ta_          15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLG   52 (90)
T ss_dssp             TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEES
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhh
Confidence            4778888 799999999999999999999999999996

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.9e-08  Score=62.08  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             CcEEEEEe-----cCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSL-----DLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v-----~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |....++|     +.++||++||++|++.+|+|+++|||+|.
T Consensus        10 ~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~   51 (81)
T d1wxva1          10 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK   51 (81)
T ss_dssp             SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred             CeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeec
Confidence            55666666     46889999999999999999999999985

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=2.8e-08  Score=65.59  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEE-EEEecCCccHHHHHHHHHHH-----hCCC--CCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTL-SLSLDLRTSVTALKSQIHDL-----IGMP--AGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti-~l~v~~tdTV~~LK~kI~e~-----~GIP--~~kQkL~~~   97 (99)
                      .+.|+|++.          +|+.+ .+.|++++||.+||++|++.     .|+|  +++|||+|.
T Consensus         7 ~i~I~~r~~----------~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~   61 (101)
T d1se9a_           7 QLEIKFRLT----------DGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA   61 (101)
T ss_dssp             CEEEEEEET----------TSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred             eEEEEEEeC----------CCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEEC
Confidence            578888875          48877 59999999999999999886     7898  889999996

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=9.3e-09  Score=67.41  Aligned_cols=42  Identities=17%  Similarity=0.347  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceE
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQK   93 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQk   93 (99)
                      ++|+|..          ++|++++|+|+.++||.+||++|++++|||+++||
T Consensus         8 M~v~Vk~----------~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr   49 (105)
T d1v2ya_           8 MTVRVCK----------MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREG   49 (105)
T ss_dssp             EEEEEEC----------SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEe----------CCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhc
Confidence            5666663          46999999999999999999999999999999998

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=9.4e-08  Score=61.53  Aligned_cols=47  Identities=19%  Similarity=0.243  Sum_probs=40.2

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |.|.|..+         +++......++.+.||+.||+||+..+|+|++.|||+|.
T Consensus         8 v~v~I~s~---------~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~   54 (95)
T d1v6ea_           8 VMVFISSS---------LNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY   54 (95)
T ss_dssp             EEEEEEET---------TSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred             EEEEEEEC---------CCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEe
Confidence            56666643         456778889999999999999999999999999999884

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=4.2e-07  Score=58.61  Aligned_cols=44  Identities=18%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .++|+|..          ++|+.+.++|++++||++||++|+   .+++++|||+|.
T Consensus         7 ~m~i~vK~----------l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~   50 (95)
T d1wiaa_           7 GINVRLKF----------LNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQ   50 (95)
T ss_dssp             SEEEEEEE----------TTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEET
T ss_pred             cEEEEEEc----------CCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEEC
Confidence            46777765          469999999999999999999996   568899999995

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=4.6e-07  Score=57.52  Aligned_cols=40  Identities=13%  Similarity=0.201  Sum_probs=35.2

Q ss_pred             cccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         58 KLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        58 kL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.++-.+...++.+.||++||++|+..+|+|++.|||+|.
T Consensus        12 ~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~   51 (90)
T d1t0ya_          12 NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF   51 (90)
T ss_dssp             SSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred             CCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEe
Confidence            3445567788999999999999999999999999999884

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.08  E-value=3.6e-06  Score=51.62  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         61 GQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        61 Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+.+.+.|..+++++.|++.++++.|+++++|+|+|+
T Consensus        13 ~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~   49 (79)
T d1euvb_          13 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD   49 (79)
T ss_dssp             SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEET
T ss_pred             CeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEEC
Confidence            7789999999999999999999999999999999996

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=7e-06  Score=50.16  Aligned_cols=47  Identities=13%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      .|+|+|+-.          +|+.+.+.|..+++++.|++.++++.|++++++||+|+
T Consensus         2 ~I~ikv~~~----------dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fd   48 (77)
T d2uyzb1           2 YIKLKVIGQ----------DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE   48 (77)
T ss_dssp             EEEEEEECT----------TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred             EEEEEEECC----------CCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEC
Confidence            367777733          58999999999999999999999999999999999996

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=5.5e-05  Score=48.73  Aligned_cols=30  Identities=20%  Similarity=0.059  Sum_probs=25.0

Q ss_pred             ecCCccHHHHHHHHHHHh--CCC-CCceEEEee
Q psy10057         68 LDLRTSVTALKSQIHDLI--GMP-AGKQKLHLD   97 (99)
Q Consensus        68 v~~tdTV~~LK~kI~e~~--GIP-~~kQkL~~~   97 (99)
                      +..+.||++||++|+++.  ++| +++|||+|+
T Consensus        34 ~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~   66 (94)
T d1x1ma1          34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYC   66 (94)
T ss_dssp             CCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred             CCCccCHHHHHHHHHHHcccCCCChhheEEEEC
Confidence            455789999999999986  455 699999996

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.97  E-value=0.0004  Score=44.95  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             EEEEEecC-CccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         63 TLSLSLDL-RTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        63 ti~l~v~~-tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +--++|+. +.||+.||.+|++.+++|..+|.|+-+
T Consensus        11 ~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~   46 (94)
T d1wf9a1          11 LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN   46 (94)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred             ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecC
Confidence            67788864 679999999999999999999999643

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0028  Score=37.82  Aligned_cols=46  Identities=13%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             eEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         42 VTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        42 v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      |+|+|+-.          +|+.+.+.|..+++++.|.+..+++.|++.++.+|+|+
T Consensus         2 I~lkv~~~----------~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fd   47 (72)
T d1wm3a_           2 INLKVAGQ----------DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD   47 (72)
T ss_dssp             EEEEEECT----------TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred             EEEEEECC----------CCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEEC
Confidence            78888832          48899999999999999999999999999999999986

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.026  Score=35.23  Aligned_cols=45  Identities=11%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.+|+|++--            |+.|.+......++|+++|.++++++++.-+|+|.
T Consensus         5 ~~~vkVh~~f------------TVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           5 AYTLKVHYKY------------TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             CEEEEEESSS------------EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CEEEEEEEEE------------EEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            6788999842            89999999999999999999999999999999995

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.071  Score=31.77  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLH   95 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~   95 (99)
                      -++|+|++|+          |+.+.-.+..++||+.|.+-|.. .|...+.-.|.
T Consensus         5 ~~~i~iRlPd----------G~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~   48 (82)
T d1h8ca_           5 VSKLRIRTPS----------GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLL   48 (82)
T ss_dssp             CEEEEEECTT----------SCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEE
T ss_pred             cEEEEEECCC----------CCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEE
Confidence            4679999995          88999999999999999999986 46666665554

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.23  E-value=0.053  Score=33.03  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh-CCCCCceEEE
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI-GMPAGKQKLH   95 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~-GIP~~kQkL~   95 (99)
                      |.++|+|++|+          |..+...+..+++|+.|.+.|.... +.....=.|+
T Consensus        13 p~t~I~iRlPd----------G~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~   59 (89)
T d1i42a_          13 PTTNIQIRLAD----------GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLM   59 (89)
T ss_dssp             CCEEEEEEETT----------TCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEE
T ss_pred             CcEEEEEEcCC----------CCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEe
Confidence            46899999995          8889999999999999999998753 4554444443

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.16  Score=30.74  Aligned_cols=38  Identities=18%  Similarity=0.123  Sum_probs=32.7

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHh
Q psy10057         37 MATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLI   85 (99)
Q Consensus        37 ~pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~   85 (99)
                      +++ .++|+|++|+          |+.+...+..++||+.|.+-|....
T Consensus        13 ~~~-~~~i~iRlPd----------G~r~~r~F~~~dtl~~l~~fv~~~~   50 (96)
T d2cr5a1          13 AEE-VVTVALRCPN----------GRVLRRRFFKSWNSQVLLDWMMKVG   50 (96)
T ss_dssp             CSS-EEEEEEECTT----------SCEEEEEEESSSBTHHHHHHHHHHT
T ss_pred             CCC-eEEEEEECCC----------CCEEEEEECCcccHHHHHHHHHHhc
Confidence            345 7999999995          8899999999999999999987653

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.2  Score=32.14  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             ceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         41 NVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        41 ~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      ..+|+|++|+          |+.+...+..++||..|.+.|.... .....=+|
T Consensus        43 ~~~l~iRlPd----------G~r~~r~F~~~~tl~~l~~~v~~~~-~~~~~~~L   85 (124)
T d1wj4a_          43 KAQLMLRYPD----------GKREQITLPEQAKLLALVKHVQSKG-YPNERFEL   85 (124)
T ss_dssp             EEEEEEECTT----------SCEEEEEEETTSCHHHHHHHHHHHH-CCTTTEEE
T ss_pred             ceEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhcc-cCCcceEE
Confidence            6899999996          8899999999999999999997753 34344334

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.64  E-value=0.67  Score=27.83  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             cCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         60 NGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        60 ~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      ++.++.+.|+++-+..+|+++|+.++++.  .-+|.|
T Consensus        20 ~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY   54 (85)
T d1ip9a_          20 KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT   54 (85)
T ss_dssp             TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEE
Confidence            35589999999999999999999999864  456666

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.26  E-value=0.78  Score=27.76  Aligned_cols=44  Identities=14%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             EEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEEEee
Q psy10057         44 FNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKLHLD   97 (99)
Q Consensus        44 i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL~~~   97 (99)
                      +.|-+|+          |+..++-|.++.++..+=+....++|+.+++=.|.|+
T Consensus         3 V~Vl~~~----------~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~   46 (76)
T d2al3a1           3 VSVLAPN----------GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ   46 (76)
T ss_dssp             EEEECTT----------SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred             EEEECCC----------CcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeC
Confidence            5667764          8999999999999999999999999999998888764

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=1.9  Score=26.36  Aligned_cols=44  Identities=16%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CceEEEEEeCCCCCCCCCcccCcEEEEEec--CCccHHHHHHHHHHHhCCCCCceEEEe
Q psy10057         40 PNVTFNVVVPNMTDKPEWKLNGQTLSLSLD--LRTSVTALKSQIHDLIGMPAGKQKLHL   96 (99)
Q Consensus        40 ~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~--~tdTV~~LK~kI~e~~GIP~~kQkL~~   96 (99)
                      |.|+|+|..           +|.++.+.+.  .+.+.++|+++|..++++.  .-+|.|
T Consensus         3 p~vtvKvtf-----------~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~--~~~lkY   48 (85)
T d2bkfa1           3 PQVTLNVTF-----------KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY   48 (85)
T ss_dssp             CCEEEEEEE-----------TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEE
T ss_pred             ccEEEEEEE-----------CCceEEEEecCCCCCcHHHHHHHHHHhcCcc--cceEEE
Confidence            358888875           4778887664  5678999999999999985  456666

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=1.2  Score=27.16  Aligned_cols=44  Identities=7%  Similarity=0.028  Sum_probs=36.6

Q ss_pred             CCCceEEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCc
Q psy10057         38 ATPNVTFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGK   91 (99)
Q Consensus        38 pg~~v~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~k   91 (99)
                      ++.+..|+|-+++          |.+.+|.|+.++|+.+|=..+.++.++..+.
T Consensus         6 ~~~~~vvkv~~~d----------g~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~   49 (100)
T d1wgra_           6 SGRPHVVKVYSED----------GACRSVEVAAGATARHVCEMLVQRAHALSDE   49 (100)
T ss_dssp             CCSCEEEEEEETT----------SCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred             CCCceEEEEEecC----------CCEEEEEECCCCcHHHHHHHHHHHhCCCCCC
Confidence            4447788888763          8899999999999999999999999986654

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=2.3  Score=25.13  Aligned_cols=42  Identities=19%  Similarity=0.152  Sum_probs=36.9

Q ss_pred             EEEEEeCCCCCCCCCcccCcEEEEEecCCccHHHHHHHHHHHhCCCCCceEE
Q psy10057         43 TFNVVVPNMTDKPEWKLNGQTLSLSLDLRTSVTALKSQIHDLIGMPAGKQKL   94 (99)
Q Consensus        43 ~i~V~~P~~~~k~ewkL~Gqti~l~v~~tdTV~~LK~kI~e~~GIP~~kQkL   94 (99)
                      +++|-+||          |+.-.+.|-+..||.++=+++.++-||..+--..
T Consensus         2 ~iRv~LPn----------gq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V   43 (73)
T d1wxma1           2 TVKVYLPN----------KQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVV   43 (73)
T ss_dssp             EEEEECSS----------SCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEE
T ss_pred             eEEEEcCC----------CCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEE
Confidence            68999996          8888899999999999999999999998876554