Psyllid ID: psy10061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MTSDRKKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPHLGT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHccHHHccccHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccHccHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtsdrkkeeGMEYVKSAEKHSLstmtsdrkkeeGMEYVKSAEKHLKTSLlkwkpdydsaadDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAadvahgedNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEwgncceapeVQTLEKLLQAFdeedpegarqalndpfikhMDVEYsrlardlplpsatcatprpasirqnaapsyvsphlgt
Flexible Loop (DISEMBL)
mtsdrkkeegmeyvksaekhslstmtsdrkkeeGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATcatprpasirqnaapsyvsphlgt
Low Complexity Region (SEG)
MTSDRKKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPdydsaaddyskaaTCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRlavalvlvqlaRGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPHLGT
Disordered region (IsUnstruct)
***********************************************SLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE*************************ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF***************FIKHMDVEYS************************************
Disordered Region (DISOPRED)
*******************************EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARD*******************************
Disordered Region (DISEMBL)
*******************************************HLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAA**********
Disordered Region (DISPRO)
***************************DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLP***************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSDRKKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPHLGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q9CWZ7	312	Gamma-soluble NSF attachm	yes	N/A	0.864	0.900	0.380	2e-50
P81127	312	Gamma-soluble NSF attachm	yes	N/A	0.836	0.871	0.389	9e-50
Q99747	312	Gamma-soluble NSF attachm	yes	N/A	0.864	0.900	0.380	1e-47
Q9U9R7	324	Gamma-soluble NSF attachm	yes	N/A	0.849	0.851	0.273	3e-24
Q9SPE5	291	Gamma-soluble NSF attachm	yes	N/A	0.833	0.931	0.263	1e-17
P93798	289	Alpha-soluble NSF attachm	no	N/A	0.649	0.730	0.281	6e-08
Q9M5P8	288	Alpha-soluble NSF attachm	N/A	N/A	0.713	0.805	0.253	5e-05
Q9SPE6	289	Alpha-soluble NSF attachm	no	N/A	0.649	0.730	0.254	0.0001
Q54NP6	291	Alpha-soluble NSF attachm	no	N/A	0.692	0.773	0.253	0.0002

>sp|Q9CWZ7|SNAG_MOUSE Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 169/284 (59%), Gaps = 3/284 (1%)

Query: 29  RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
           +K  EG+E++  AEK+LKT  LKWKPDYDSAA +Y KAA  FK AK F+Q K+  L+ A 
Sbjct: 4   QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63

Query: 89  CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
            +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct: 64  AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
            +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183

Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
           ++E E+     +  +A VLV L R D VAAE+  +E         + +   LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
           ++D +   +  N P  K+MD +Y++L   L +P        PA+
Sbjct: 244 QQDQDQVSEVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.
Mus musculus (taxid: 10090)

>sp|P81127|SNAG_BOVIN Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3

 Score =  197 bits (501), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/275 (38%), Positives = 166/275 (60%), Gaps = 3/275 (1%)

Query: 29  RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
           +K  EG+E++  AEK+LKT  LKWKPDYDSAA +Y KAA  FK AK F+Q K+  LK A 
Sbjct: 4   QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAV 63

Query: 89  CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
            +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct: 64  AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
            +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNI 183

Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
           ++E E+     +  +A VLV L R D VAAE+  +E         + +   LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSA 300
           ++D +   +  N P  K+MD +Y++L   L +P  
Sbjct: 244 QQDQDQVAEVCNSPLFKYMDNDYAKLGLSLVVPGG 278

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q99747|SNAG_HUMAN Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 168/284 (59%), Gaps = 3/284 (1%)

Query: 29  RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
           +K  EG+E++  AEK+LKT  LKWKPDYDSAA +Y KAA  FK AK F+Q K+  L+ A 
Sbjct: 4   QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63

Query: 89  CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
            +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct: 64  AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
            +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct: 124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183

Query: 209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEVQTLEKLLQAFD 265
           ++E E+     +  +A VLV L R D VAAE+  +E         + +   LE+LL+ +D
Sbjct: 184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
           ++D +      N P  K+MD +Y++L   L +P        PA+
Sbjct: 244 QQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Homo sapiens (taxid: 9606)

>sp|Q9U9R7|SNAG_DICDI Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 144/289 (49%), Gaps = 13/289 (4%)

Query: 29  RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN 88
            KK EG  ++K  +K  KT++ +WK D+DSAA  Y KAA  F+ AK +   K   L+ + 
Sbjct: 8   NKKLEGETFMKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSL 67

Query: 89  CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
           C       Y AAK +E A  M KEL +  +  NL  ++  L+   GN   A+  + K AK
Sbjct: 68  CQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAK 127

Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL--IRQEI 206
            LE++  +  + L + A ++   +D    + +   +   M ++ K++ +A DL  ++  +
Sbjct: 128 LLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRV 187

Query: 207 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK---AFKEWGNCCEAPEVQTLEKLLQA 263
               E  H L    L+V  + + LA  D VA++K    F ++ +   + E  T ++L+ A
Sbjct: 188 FVKLEQNHDLHKSCLSV--ITISLATDDIVASKKYYEQFLDYPSFIHSQEGTTAQELITA 245

Query: 264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPL------PSATCATPR 306
           FD  D +G ++ ++      +D + +++A++L +      P+     P+
Sbjct: 246 FDNHDVDGVKKIVSRHIFNFLDNQVAKIAKNLSISKDSLNPTINSTAPQ 294

May be required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus (By similarity). Involved in vesicle fusion with nsfA and probably SNARE proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SPE5|SNAG_ARATH Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 25  MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL 84
           M+SD  K      +  A+K  K +L +W  D+  A + Y +AA  F+ +  +++ K  L 
Sbjct: 1   MSSDPDK-----MMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALE 55

Query: 85  KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144
           KA+   E   S + AAKH+E A  + ++L+   +V +  ++A+ L++E G  + AS  L 
Sbjct: 56  KASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALG 115

Query: 145 KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARMCVRVKEFDKAADLIR 203
           K A++LE++K D A+ LY+ A ++   ED   Q A  + RA A + +++++F  AA    
Sbjct: 116 KAARALEDVKPDDAIQLYTDACEILE-EDGRDQMAFDLYRACANVYIKLEKFTDAATFFL 174

Query: 204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC---CEAPEVQTLEKL 260
           +      + +   +  +  ++ +++ L   D   AEK + +        ++ + ++  +L
Sbjct: 175 RLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRL 234

Query: 261 LQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSAT 301
           L A++E D E  ++  +   + ++D    +LAR LP    T
Sbjct: 235 LTAYNEGDIEEIKKVASASTVSNLDHMIIKLARKLPTGDVT 275

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 56  YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND 115
           Y+ AAD Y KAA CFK AKS+ +     +K +   +++ S + AA+    A   C +   
Sbjct: 29  YEDAADFYDKAANCFKLAKSWDRAGSTYVKLSTVIQSSDSKHEAAQAYADA-GHCYKKTS 87

Query: 116 LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDN 174
             +  +  +QAA LFL+ G    A    ++ A+  E E   + A+  + +AAD+   E+ 
Sbjct: 88  AKEAISCLEQAAYLFLDNGRFNMAGKYYKEIAELYELEQNFEQAIIYFEKAADIYQSEEA 147

Query: 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL--VLVQLAR 232
              A +  ++ A+   +++++ KA   I ++IG    + +LL  G     L   + QL +
Sbjct: 148 TTAANQCNAKVAQFAAQLEQYQKAIQ-IYEDIGRPSLNNNLLKYGVKGHLLNAGICQLCK 206

Query: 233 GDTVAAEKAFKEWG----NCCEAPEVQTLEKLLQAFDEED 268
           GD VA   A   +           E + L  L  A DEED
Sbjct: 207 GDVVAITNALDRYQEMDPTFSGTREYKLLVDLAAAVDEED 246

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Vitis vinifera (taxid: 29760)

>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 9/241 (3%)

Query: 34  GMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN 93
           G ++   AEK L    L +   Y+ AAD + KA  CFK AKS+ +     +K ANC+   
Sbjct: 8   GEDFENKAEKKLGGWAL-FGSKYEDAADLFDKAGNCFKLAKSWDKAGAVYVKLANCHLKL 66

Query: 94  KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL 153
            S  H A +       C + +++ +  +  +QA   FL+ G    ++   ++ A+  E+ 
Sbjct: 67  DSK-HEAANAYADAAHCYKKSNIKEAVSCLEQAVNFFLDIGRLNMSARYYKEIAELYEQE 125

Query: 154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE 213
           ++      Y+        ED      + + + A+   + +++ KA + I +EI  H  + 
Sbjct: 126 QNLDQAIRYAVYEINPGSEDVSAPPNQCLKKIAQFSAQNEKYPKAIE-IFEEIARHSVNN 184

Query: 214 HLLAIGRLAVALV--LVQLARGDTVAAEKAFKEWG----NCCEAPEVQTLEKLLQAFDEE 267
           +LL  G     L   + QL +GD V    A + +           E + L  L  A DEE
Sbjct: 185 NLLKYGVREHLLNAGICQLCKGDVVPINNALERYQELDPTFSGTRECKLLVDLAAAIDEE 244

Query: 268 D 268
           D
Sbjct: 245 D 245

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Solanum tuberosum (taxid: 4113)

>sp|Q9SPE6|SNAA2_ARATH Alpha-soluble NSF attachment protein 2 OS=Arabidopsis thaliana GN=ASNAP2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 56  YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND 115
           Y+ AAD   KAA  +K AKS+ Q  +  LK A+C+  + S  H A +       C +  D
Sbjct: 29  YEDAADLLEKAANSYKLAKSWDQAGKAYLKLADCHLKSDSK-HDAANAYAEAAKCYKKVD 87

Query: 116 LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDN 174
             +  +  ++A  +F E G    A+   ++ A+  E + K + A+  + +AA+    E+ 
Sbjct: 88  TNEAASCLERAVNIFCEIGRLNMAARYYKEIAEYYESDQKFEQAIAYFEKAAEFFQNEEV 147

Query: 175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV--LVQLAR 232
              A +   + A+   ++++++KA   I ++I  H  + +LL  G     L   +  L +
Sbjct: 148 TTSANQCNLKVAQYAAQLEQYEKAIK-IYEDIARHSLNNNLLKYGVKGHLLTAGMCHLCK 206

Query: 233 GDTVAAEKAFKEWGNC----CEAPEVQTLEKLLQAFDEED 268
            D V+   A +++ +         E + L  L  A DEED
Sbjct: 207 ADVVSITNALEKYQDLDPTFTGTRECKFLADLASAIDEED 246

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpA PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 16/241 (6%)

Query: 36  EYVKSAEKHLKT-SLLKW----KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCY 90
           E++ +A+K L+  +  K        YD AA DY+KAA  FK +K + Q      KAA C+
Sbjct: 9   EFLDAADKRLRGGNFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGAAFQKAAECF 68

Query: 91  ETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL 150
               S + AA     A   C +  ++ D     K A   + ++G R A S   +K    L
Sbjct: 69  LKGSSKHDAASSYVLA-AGCYKKGNVIDAITCLKAAIEYYTDEG-RFAISAKHQKEIAEL 126

Query: 151 EELKS--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
            E +   D A+  Y  A+D   GE++   + + + + A    +++ ++K+ + I +++  
Sbjct: 127 YEAEGDFDQAIASYQIASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIE-IYEQVAA 185

Query: 209 HQESEHLLAIG--RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQ 262
                +L   G     +   L  LA  D V AE+A + +     +     E + L+ ++Q
Sbjct: 186 ASLDNNLTQWGCKEYFLRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRLLDGIIQ 245

Query: 263 A 263
           A
Sbjct: 246 A 246

May be required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus (By similarity). Involved in vesicle fusion with nsfA and probably SNARE proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
91080077	328	PREDICTED: similar to AGAP005632-PA [Tri	0.923	0.914	0.607	1e-104
242023975	351	gamma-soluble NSF attachment protein, pu	0.910	0.843	0.593	1e-100
328776169	658	PREDICTED: hypothetical protein LOC40936	0.898	0.443	0.587	9e-99
156555288	366	PREDICTED: gamma-soluble NSF attachment	0.898	0.797	0.593	1e-98
380016805	658	PREDICTED: uncharacterized protein LOC10	0.898	0.443	0.583	9e-98
158294511	322	AGAP005632-PA [Anopheles gambiae str. PE	0.907	0.916	0.587	2e-96
383858309	675	PREDICTED: uncharacterized protein LOC10	0.898	0.432	0.576	7e-96
157126634	320	gamma-soluble nsf attachment protein (sn	0.907	0.921	0.584	2e-94
322784122	338	hypothetical protein SINV_07626 [Solenop	0.898	0.863	0.587	2e-93
332031064	349	Gamma-soluble NSF attachment protein [Ac	0.898	0.836	0.580	3e-93

>gi|91080077|ref|XP_967815.1| PREDICTED: similar to AGAP005632-PA [Tribolium castaneum] gi|270003201|gb|EEZ99648.1| hypothetical protein TcasGA2_TC002405 [Tribolium castaneum]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/301 (60%), Positives = 246/301 (81%), Gaps = 1/301 (0%)

Query: 25  MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL 84
           M++++K EEG+E++++AEKHLKTSLLKW+PDY+SAADDY+KAATCF+ AK+F QCKE LL
Sbjct: 1   MSANKKNEEGLEHIRNAEKHLKTSLLKWRPDYESAADDYNKAATCFRNAKNFAQCKECLL 60

Query: 85  KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144
           KA +C++ N++ + AAK L+QA+++CKEL DL DV +LA++AA +F   G+ + A+  L+
Sbjct: 61  KAVDCHKQNRALFSAAKALDQAVLVCKELGDLQDVASLAERAANMFQSHGSADTAAASLD 120

Query: 145 KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204
           K AK LE    + AL L+  A+++A  +D+ +QAAEY+S+ AR+ V+++++D AAD IR+
Sbjct: 121 KAAKILEAQHPEQALRLFQHASEIAMIQDSSRQAAEYVSKVARLHVKLQQYDLAADAIRR 180

Query: 205 EIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF 264
           E+G HQ++E   A GRLAVALVLVQLARGD VAAEKAFKEWGN CEAPEVQTLE LLQA+
Sbjct: 181 ELGLHQQNESYQATGRLAVALVLVQLARGDVVAAEKAFKEWGNYCEAPEVQTLEMLLQAY 240

Query: 265 DEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPHLG 324
           DEEDPE A++AL++PFIKHMDVEY+ LARD+PLP    ATP  A++R+NAAPSYVSP+  
Sbjct: 241 DEEDPEAAKRALSNPFIKHMDVEYAILARDMPLPEGI-ATPPKATVRENAAPSYVSPNSQ 299

Query: 325 T 325
           T
Sbjct: 300 T 300

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023975|ref|XP_002432406.1| gamma-soluble NSF attachment protein, putative [Pediculus humanus corporis] gi|212517829|gb|EEB19668.1| gamma-soluble NSF attachment protein, putative [Pediculus humanus corporis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/298 (59%), Positives = 242/298 (81%), Gaps = 2/298 (0%)

Query: 25  MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL 84
           M+S +K EEG E +K AEK LKTS LKW+PDY+ AAD+YS+AATCF+ A+SF++ K+ L+
Sbjct: 1   MSSTKKLEEGFERIKLAEKSLKTSFLKWRPDYEVAADEYSQAATCFRNARSFERSKDCLM 60

Query: 85  KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144
           KA+ C++ + S +HAAK L+QAI++ K+LND  +V  LA++A +L+ + G+ E+ ++ L+
Sbjct: 61  KASECHKQSHSFFHAAKCLDQAILLAKDLNDFKEVTQLAEKACSLYQQHGSPESGASSLD 120

Query: 145 KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204
           K AK LE+ + + AL LY +AADV   ED+++QAAE++S+ AR+ V+++ +D+AAD IR+
Sbjct: 121 KAAKILEQHEPEQALRLYQKAADVVLIEDSHRQAAEFMSKVARILVKLQMYDQAADAIRR 180

Query: 205 EIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF 264
           EIG+HQ+++H+ AIGRLAVALVLVQLARGD VAAEKA+KEWGNCCEAPEVQ LE LL+ F
Sbjct: 181 EIGFHQQTDHIPAIGRLAVALVLVQLARGDYVAAEKAYKEWGNCCEAPEVQNLELLLRGF 240

Query: 265 DEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           D+EDP+  R+ALN PFIKHMDVEY+RLARDLPLP    A P+ A +R+NAAPSYVSP+
Sbjct: 241 DDEDPDLVREALNHPFIKHMDVEYARLARDLPLPEGISA-PK-AMVRENAAPSYVSPN 296

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776169|ref|XP_392878.3| PREDICTED: hypothetical protein LOC409363 [Apis mellifera]

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 172/293 (58%), Positives = 229/293 (78%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EEG  +++ AEK LKTSLLKW+PD++ AAD+Y+ AATCF+ AKS+QQCK+ L+KA++C
Sbjct: 3   KIEEGNLHIRQAEKSLKTSLLKWRPDFEVAADEYTSAATCFRIAKSYQQCKDCLMKASDC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           Y+ N+S +HAAK +EQA ++CKE+ +LT+V  LA  A +L+L  G+ E+ +TVL+KG K 
Sbjct: 63  YKENRSWFHAAKSIEQATLICKEMGNLTEVSKLAHSACSLYLMHGSPESGATVLDKGGKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           +E  +   AL L+ RAA +  GED+ +QAAEY+S+ AR+ V+++ +D+AAD IR+EIG H
Sbjct: 123 IEATQPQEALDLFKRAASIVMGEDSPRQAAEYMSKVARLLVKLQMYDEAADAIRREIGMH 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+++H  ++GRL VALVLVQLARGD VAAEKAFKEWGN CEAPE+ TLE LLQA+D ED 
Sbjct: 183 QQTDHTSSVGRLTVALVLVQLARGDQVAAEKAFKEWGNYCEAPEINTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN+PFIKHMDVEY++LAR LPLP    A P P  +R NAA SY SP+
Sbjct: 243 DAARAALNNPFIKHMDVEYAKLARGLPLPQQEYAIP-PPGVRANAAESYTSPN 294

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555288|ref|XP_001605734.1| PREDICTED: gamma-soluble NSF attachment protein-like [Nasonia vitripennis]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/293 (59%), Positives = 230/293 (78%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EE   +++ AEK LKT+ LKW+PDYD AAD+YS AATCF+ AK++QQCK+ L+KAA+C
Sbjct: 3   KIEEANAHIRQAEKSLKTTFLKWRPDYDVAADEYSAAATCFRVAKNYQQCKDCLMKAADC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           ++ N+S +HAAK+ EQA+++ KE+N L +  +LA +A +L+ + G+ E+ +TVL+K AK 
Sbjct: 63  FKQNRSWFHAAKNYEQALLVLKEMNQLAEAPSLAHRACSLYEQHGSPESGATVLDKAAKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           LE  + + AL LY RA+DV  GED+ +QAAEY+S+ AR+ V++  +D+AAD +RQEIG H
Sbjct: 123 LEATQPEQALELYKRASDVVMGEDSPRQAAEYMSKVARILVKLGMYDQAADAVRQEIGMH 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+ +H  ++GRLAVALVLVQLARGD VAAEKAFKEWGN C+APEVQTLE LLQA+D ED 
Sbjct: 183 QQIDHQPSVGRLAVALVLVQLARGDQVAAEKAFKEWGNYCDAPEVQTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN PFIKHMDVEY++LAR LPLP    A P P  +R NAAPSY+SP+
Sbjct: 243 DAARSALNSPFIKHMDVEYAKLARGLPLPQQEYAVP-PVGVRANAAPSYISPN 294

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016805|ref|XP_003692363.1| PREDICTED: uncharacterized protein LOC100870021 [Apis florea]

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 171/293 (58%), Positives = 228/293 (77%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EEG  +++ AEK LKTSLLKW+PD++ AAD+Y+ AATCF+ AKS+QQCK+ L+KA++C
Sbjct: 3   KIEEGNLHIRQAEKSLKTSLLKWRPDFEVAADEYTSAATCFRIAKSYQQCKDCLMKASDC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           Y+ N+S +HAAK +EQA ++CKE+ +LT+V  LA  A +L+L  G+ E+ +TVL+K  K 
Sbjct: 63  YKENRSWFHAAKSIEQATLICKEMGNLTEVSKLAHSACSLYLMHGSPESGATVLDKVGKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           +E  +   AL L+ RAA +  GED+ +QAAEY+S+ AR+ V+++ +D+AAD IR+EIG H
Sbjct: 123 IEATQPQEALDLFKRAASIVMGEDSPRQAAEYMSKVARLLVKLQMYDEAADAIRREIGMH 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+++H  ++GRL VALVLVQLARGD VAAEKAFKEWGN CEAPE+ TLE LLQA+D ED 
Sbjct: 183 QQTDHTPSVGRLTVALVLVQLARGDQVAAEKAFKEWGNYCEAPEINTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN+PFIKHMDVEY++LAR LPLP    A P P  +R NAA SY SP+
Sbjct: 243 DAARAALNNPFIKHMDVEYAKLARGLPLPQQEYAIP-PPGVRANAAESYTSPN 294

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294511|ref|XP_315648.4| AGAP005632-PA [Anopheles gambiae str. PEST] gi|157015596|gb|EAA10924.4| AGAP005632-PA [Anopheles gambiae str. PEST]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/298 (58%), Positives = 234/298 (78%), Gaps = 3/298 (1%)

Query: 25  MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL 84
           MTS  K EE  E+++ AEK LKTSLLKW+PD+D+AA++Y+KAATCF+ AKS  QC++ L+
Sbjct: 1   MTS--KIEEAQEHIRQAEKCLKTSLLKWRPDFDNAAEEYNKAATCFRNAKSLDQCRDCLM 58

Query: 85  KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE 144
           K+A+C+  N++ +HAAK L+QAI++CKE+N+L D+  LA++A  L+ + G+ E+ +TVL+
Sbjct: 59  KSADCHRQNRALFHAAKCLDQAILICKEMNNLGDIRKLAERACNLYQQHGSPESGATVLD 118

Query: 145 KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ 204
           K AK LE+   + AL LY +A DV   ED+ +Q AEY S+ AR+ V++  +D+AAD IR+
Sbjct: 119 KAAKILEQTHPEDALQLYKQAVDVVTIEDSTRQGAEYASKVARIMVKLGMYDQAADAIRR 178

Query: 205 EIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF 264
           EIG HQ+     AIGRLAVALVLVQLARGD VAAEKAFKEWGNCC+A EVQTLE LLQA+
Sbjct: 179 EIGLHQQVGSEGAIGRLAVALVLVQLARGDYVAAEKAFKEWGNCCDAAEVQTLESLLQAY 238

Query: 265 DEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           D+EDPE A++AL+ PFI+HMDVEY+RLARDLPLP      P+ A++ +NAA SYVSP+
Sbjct: 239 DDEDPELAQRALSSPFIRHMDVEYARLARDLPLPKGVSIAPK-ANVIENAAASYVSPN 295

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858309|ref|XP_003704644.1| PREDICTED: uncharacterized protein LOC100875076 [Megachile rotundata]

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 224/293 (76%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EEG  +++ AEK LKTSLLKW+PD++ AAD+Y+ AATCF+ AKS+QQC++ L+KAA+C
Sbjct: 3   KIEEGNAHIRQAEKSLKTSLLKWRPDFEVAADEYTTAATCFRIAKSYQQCRDCLMKAADC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           Y+ N+S +HAAK +EQA+++CKE+ +L DV  LA  A +L+   G+ E+ +TVL+K  K 
Sbjct: 63  YKENRSWFHAAKSIEQALLICKEMGNLADVPKLAHSACSLYQTHGSPESGATVLDKAGKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           +E      AL L+ RAA++  GED+ +QAAEY+S+ AR+ V+++ +D+AAD +R+EIG H
Sbjct: 123 VEATNPQDALELFKRAANIVMGEDSPRQAAEYMSKVARLLVKLQMYDEAADAVRREIGMH 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+ +H  ++GRL VALVLVQLARGD VAAEKAFKEWGN CEAPEV TLE LLQA+D ED 
Sbjct: 183 QQIDHAPSVGRLTVALVLVQLARGDQVAAEKAFKEWGNYCEAPEVNTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN PFIKHMDVEY++LAR LPLP      P P  +R NAA SY SP+
Sbjct: 243 DAARAALNSPFIKHMDVEYAKLARGLPLPQQEYTMP-PPGVRANAAESYKSPN 294

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126634|ref|XP_001654683.1| gamma-soluble nsf attachment protein (snap) [Aedes aegypti] gi|108873206|gb|EAT37431.1| AAEL010589-PA [Aedes aegypti]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/296 (58%), Positives = 224/296 (75%), Gaps = 1/296 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EE  E+++ AEK LKTSLLKW+PDYD AAD+Y+KAATCF+ AK+  QCKE LLKA++C
Sbjct: 4   KIEEAQEHIRQAEKSLKTSLLKWRPDYDFAADEYNKAATCFRNAKALDQCKECLLKASDC 63

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           +  N++ +HAAK L+Q I++CK++N+L +V   A++A  L+ + G+ E+ +  L+K AK 
Sbjct: 64  HRQNRAIFHAAKCLDQVILICKDMNNLAEVRKYAEKACNLYQQHGSPESGAATLDKAAKI 123

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           LE    + AL LY  A DVA  ED+ +Q AEY S+ AR+ V++  +D+AAD IR+EIG H
Sbjct: 124 LEGTNPEDALQLYKLAVDVATIEDSSRQGAEYASKVARIMVKLGMYDQAADAIRREIGLH 183

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+     AIGRLAVALVLVQLARGD VAAEKAFKEWGNCC+A EVQTLE LLQA+D+EDP
Sbjct: 184 QQVGSESAIGRLAVALVLVQLARGDYVAAEKAFKEWGNCCDAAEVQTLESLLQAYDDEDP 243

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPHLGT 325
           E A +AL  PFI+HMDVEY+RLARDLPLP      P+ A++ +NAA SYVSP+ G 
Sbjct: 244 ELAARALASPFIRHMDVEYARLARDLPLPKGVAVAPK-ANVIENAAASYVSPNSGN 298

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784122|gb|EFZ11211.1| hypothetical protein SINV_07626 [Solenopsis invicta]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/293 (58%), Positives = 223/293 (76%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EE  E+++ AEK LK + LKW+PDY+ AAD+YS AATCF+ AKS+ QCK+ L+KAA+C
Sbjct: 3   KIEEANEHIRQAEKALKPTFLKWRPDYEVAADEYSHAATCFRIAKSYAQCKDCLVKAADC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           Y+ +K+ +HA K +EQA+++CKE+ DL++V  LA  A  LF + G+ E+    L+KGAK 
Sbjct: 63  YKQSKAWFHAGKSIEQALVICKEMGDLSEVLKLAHSACGLFQQHGSPESGVNALDKGAKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           LE      AL L+ RAAD+  GED+ + AAEY+S+AAR+ V+++ +D+AAD IR+EIG +
Sbjct: 123 LEATHPQQALELFKRAADIHMGEDSSRHAAEYMSKAARLLVKLQMYDEAADAIRREIGMY 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+ +   ++GRL VALVLVQLARGD VAAEKAFKEWGN CEAPEVQTLE LLQA+D ED 
Sbjct: 183 QDIKLWNSLGRLTVALVLVQLARGDQVAAEKAFKEWGNFCEAPEVQTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN PFIKHMDVEY++LAR LPLP    A P PA +R NAA SYVSP+
Sbjct: 243 DAARAALNSPFIKHMDVEYAKLARGLPLPQQEYAIP-PAGVRANAAESYVSPN 294

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031064|gb|EGI70650.1| Gamma-soluble NSF attachment protein [Acromyrmex echinatior]

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/293 (58%), Positives = 222/293 (75%), Gaps = 1/293 (0%)

Query: 30  KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC 89
           K EE  E+++ AEK LK + LKW+PDY+ AAD+YS AATCF+ AKS+ QCK+ L+KAA+C
Sbjct: 3   KIEEANEHIRQAEKALKPTFLKWRPDYEVAADEYSHAATCFRVAKSYAQCKDCLVKAADC 62

Query: 90  YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS 149
           Y+  K+ +HAA+ +EQA+++CKE+ +L++V  LA  A  LF + G+ E+  T L+K AK 
Sbjct: 63  YKQTKAWFHAARCIEQALLVCKEMGNLSEVSKLAHNACGLFQQHGSPESGVTALDKAAKM 122

Query: 150 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 209
           LE  +   AL L+ RA D+  GEDN + AAEY+S+ AR+ V+++ +D+AAD IR+EIG +
Sbjct: 123 LEATQPQQALELFRRAVDIISGEDNPRHAAEYMSKVARLLVKLQMYDEAADAIRREIGMY 182

Query: 210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDP 269
           Q+ +   ++GRL VALVLVQLARGD VAAEKAFKEWGN CEAPEVQTLE LLQA+D ED 
Sbjct: 183 QDVKLWQSLGRLTVALVLVQLARGDQVAAEKAFKEWGNFCEAPEVQTLEMLLQAYDNEDA 242

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPH 322
           + AR ALN PFIKHMDVEY++LAR LPLP    A P PA +R NAA SYVSP+
Sbjct: 243 DAARAALNSPFIKHMDVEYAKLARGLPLPQQEYAIP-PAGVRANAAESYVSPN 294

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
FB|FBgn0028552	302	gammaSnap "gamma-soluble NSF a	0.830	0.894	0.440	1.9e-58
FB|FBgn0037789	283	CG6208 [Drosophila melanogaste	0.710	0.816	0.432	3.3e-47
UNIPROTKB|P81127	312	NAPG "Gamma-soluble NSF attach	0.889	0.926	0.331	1.4e-41
MGI|MGI:104561	312	Napg "N-ethylmaleimide sensiti	0.864	0.900	0.327	5.9e-41
UNIPROTKB|Q99747	312	NAPG "Gamma-soluble NSF attach	0.864	0.900	0.327	9.6e-41
UNIPROTKB|E2R561	311	NAPG "Uncharacterized protein"	0.830	0.868	0.333	2e-40
UNIPROTKB|E1BWS2	314	NAPG "Uncharacterized protein"	0.904	0.936	0.318	4.2e-40
ZFIN|ZDB-GENE-040718-171	310	napg "N-ethylmaleimide-sensiti	0.827	0.867	0.333	1.8e-39
ZFIN|ZDB-GENE-050320-46	308	napgl "N-ethylmaleimide-sensit	0.830	0.876	0.333	7.8e-39
WB|WBGene00013345	299	Y59A8B.8 [Caenorhabditis elega	0.84	0.913	0.268	7.6e-25

FB|FBgn0028552 gammaSnap "gamma-soluble NSF attachment protein" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 119/270 (44%), Positives = 172/270 (63%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  E  + VK AEK LK S+LKW P             T ++ AKS+ + KE  LKA +
Sbjct:     7 KKIAEAEDLVKQAEKSLKLSMLKWVPDYDSAADEYSKAATAYRIAKSYDKSKECFLKAID 66

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              Y+ NKS +HAAK  EQ I++ K+ + L +VE  A ++A+L+ + G+ EAA++ L+K AK
Sbjct:    67 AYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASLYQQHGSPEAAASALDKAAK 126

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
               E    D AL  Y  A +V   ED+ +QAAEY S+ +R+ V+++ +D+A + +++EI  
Sbjct:   127 LTESKHPDMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEATNALKKEISL 186

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEED 268
             +Q++E    IGR           RGD+V AEK F+EWGNCCE  EV TL+ LLQAFD+ED
Sbjct:   187 NQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDED 246

Query:   269 PEGARQALNDPFIKHMDVEYSRLARDLPLP 298
             PE A + L  PFI+HMDVEY+ L++++PLP
Sbjct:   247 PELAARMLASPFIRHMDVEYAILSKNIPLP 276

GO:0005737 "cytoplasm" evidence=NAS

GO:0005483 "soluble NSF attachment protein activity" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0031201 "SNARE complex" evidence=IDA

FB|FBgn0037789 CG6208 [Drosophila melanogaster (taxid:7227)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 100/231 (43%), Positives = 149/231 (64%)

Query:    68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA 127
             T ++ AKSF + K+ LLKA +CYE NKS +HAAK  EQ I++ KE + L++VE+ A +A 
Sbjct:    37 TAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRAC 96

Query:   128 TLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 187
              L+ + G+ EAA+  L+K AK  E    D AL  Y RA  V    D+  QA+E+ S+ +R
Sbjct:    97 CLYQQHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSR 156

Query:   188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGN 247
             + VR+K++++A   +++EI  + +++    +GR             D V A+K FK+WGN
Sbjct:   157 ILVRLKKYEEATKALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGN 216

Query:   248 CCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLP 298
              C+  EV TL+ LL+AFD+EDPE A + L  PFI+HMDVEY+ L++D+PLP
Sbjct:   217 RCDPQEVNTLQNLLKAFDDEDPELATKMLASPFIRHMDVEYALLSKDVPLP 267

GO:0005483 "soluble NSF attachment protein activity" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|P81127 NAPG "Gamma-soluble NSF attachment protein" [Bos taurus (taxid:9913)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 98/296 (33%), Positives = 157/296 (53%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  EG+E++  AEK+LKT  LKWKP               FK AK F+Q K+  LK A 
Sbjct:     4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAV 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct:    64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct:   124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNI 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCE---APEVQTLEKLLQAFD 265
             ++E E+     +           R D VAAE+  +E  +      + +   LE+LL+ +D
Sbjct:   184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSA----TCATPRPASIRQNAAPS 317
             ++D +   +  N P  K+MD +Y++L   L +P        A P  A     AAP+
Sbjct:   244 QQDQDQVAEVCNSPLFKYMDNDYAKLGLSLVVPGGGVKKKAAAPPQAKPEGTAAPA 299

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:104561 Napg "N-ethylmaleimide sensitive fusion protein attachment protein gamma" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 93/284 (32%), Positives = 153/284 (53%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  EG+E++  AEK+LKT  LKWKP               FK AK F+Q K+  L+ A 
Sbjct:     4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct:    64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct:   124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCE---APEVQTLEKLLQAFD 265
             ++E E+     +           R D VAAE+  +E  +      + +   LE+LL+ +D
Sbjct:   184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
             ++D +   +  N P  K+MD +Y++L   L +P        PA+
Sbjct:   244 QQDQDQVSEVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287

GO:0005739 "mitochondrion" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q99747 NAPG "Gamma-soluble NSF attachment protein" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 93/284 (32%), Positives = 152/284 (53%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  EG+E++  AEK+LKT  LKWKP               FK AK F+Q K+  L+ A 
Sbjct:     4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct:    64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct:   124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCE---APEVQTLEKLLQAFD 265
             ++E E+     +           R D VAAE+  +E  +      + +   LE+LL+ +D
Sbjct:   184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
             ++D +      N P  K+MD +Y++L   L +P        PA+
Sbjct:   244 QQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVPGGGIKKKSPAT 287

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=NAS

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

UNIPROTKB|E2R561 NAPG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 91/273 (33%), Positives = 149/273 (54%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  EG+E++  AEK+LKT  LKWKP               FK AK F+Q K+  L+ A 
Sbjct:     4 QKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAV 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +E N++ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct:    64 AHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD+AA  I++E   
Sbjct:   124 LIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNI 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQAFD 265
             ++E E+     +           R D VAAE+  +E  +      + +   LE+LL+ +D
Sbjct:   184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFSGSEDCAALEQLLEGYD 243

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLP 298
             ++D +      N P  K+MD +Y++L   L +P
Sbjct:   244 QQDQDQVSDVCNSPLFKYMDNDYAKLGLSLVVP 276

GO:0005739 "mitochondrion" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BWS2 NAPG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 95/298 (31%), Positives = 155/298 (52%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  E +E++  AEK+LKT  LKWKP               FK AK F Q +E  L+ A 
Sbjct:     4 QKINEALEHIAKAEKYLKTGFLKWKPDYDSAATEYGKAAVAFKNAKQFDQAREACLREAE 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +E NK+ +HAAK  EQA MM KE+  L +   L ++A+ ++LE G  + A+  LE+  K
Sbjct:    64 AHENNKALFHAAKAYEQAGMMLKEMQRLPEAVQLIEKASMMYLENGTPDTAAIALERAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY +AA V   E+  +QA E + +A+R+ VR +  D+AA  +++E   
Sbjct:   124 LIENVSPEKAVQLYQQAASVFENEERLRQALEMLGKASRLLVRGRRLDEAALSLQKEKSI 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCE---APEVQTLEKLLQAFD 265
             ++E E+     +           R D VAAE+  +E  +      + +   LE+LL+ +D
Sbjct:   184 YKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYD 243

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRP-ASIRQNAAPSYVSPH 322
             ++D +   +  N P  K+MD +Y++L   L +P        P A+  +   P+ V  H
Sbjct:   244 QQDQDQVSEVCNLPLFKYMDNDYAKLGLTLVVPGGGIKKKSPNATQDKTRGPATVGSH 301

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-040718-171 napg "N-ethylmaleimide-sensitive factor attachment protein, gamma" [Danio rerio (taxid:7955)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 91/273 (33%), Positives = 150/273 (54%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  E  +++  AEK LKTS+ KWKP               FK AK F+Q K+  LK A 
Sbjct:     4 QKINEAHDHITKAEKCLKTSMTKWKPDYDGAASEMAKAAVAFKNAKQFEQAKDAYLKEAE 63

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +  NK+ +HAAK  EQA MM K++  + +   L ++A+ +++E G    A   L++  K
Sbjct:    64 YHTENKALFHAAKAYEQAGMMLKDMKKMPEAIQLIEKASIMYVENGTSGTAGMALDRAGK 123

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E +  + A+ LY +AA V   ED  +QAAE + +++R+ VR++  D+AA  +++E   
Sbjct:   124 LIEPIDLEKAVDLYQKAASVFENEDRLRQAAELLGKSSRLLVRLRRLDEAAVALQKEKNM 183

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQAFD 265
             ++E E+     +           RGD VAA+K  +E  +      + +  ++E LL AFD
Sbjct:   184 YKEIENYPTCFKKTIAQLVHLH-RGDFVAADKCVRESYSLPGFSGSEDCVSMETLLAAFD 242

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLP 298
             E+D +G  +  N P +K+MD +Y++LA  L +P
Sbjct:   243 EQDEDGVSRVCNSPLLKYMDNDYAKLAISLKVP 275

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-050320-46 napgl "N-ethylmaleimide-sensitive factor attachment protein, gamma, like" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 91/273 (33%), Positives = 147/273 (53%)

Query:    29 RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
             +K  E  E++  AEK+LKTS +KWKP               FK AK  +Q K+  L+ A 
Sbjct:     3 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 62

Query:    89 CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
              +  N+S +HAAK  EQA MM K+L  + +     ++A+ +++E G  + A+  L++  K
Sbjct:    63 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 122

Query:   149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
              +E L    A+ LY +AA V   E+  +QAAE I +A+R+ VR ++FD+AA  +++E   
Sbjct:   123 LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 182

Query:   209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQAFD 265
             ++E E+     +           R D VAA+K  +E  +      + +   LE LLQA+D
Sbjct:   183 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 242

Query:   266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLP 298
             E+D E   +    P + +MD +Y++LA  L +P
Sbjct:   243 EQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVP 275

GO:0006886 "intracellular protein transport" evidence=IEA

WB|WBGene00013345 Y59A8B.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 76/283 (26%), Positives = 135/283 (47%)

Query:    25 MTSDRKKEEGMEYVKSAEKHLKTSL--LKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEY 82
             M++  + +E  E  + AE  +KTS+  LK+KP              C++ A+  ++    
Sbjct:     1 MSNTARLKEAAECERKAEDCMKTSMIKLKFKPDFDGAASAMERASVCYRNAQDPKKAAGS 60

Query:    83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV 142
             LLKAA  YE N++ +HAAK  E A M+ +++ + ++   L ++A   + E G+ + A+  
Sbjct:    61 LLKAAEYYEQNRNLFHAAKAREGAAMLLRDIKEFSEAVVLFEKAINGYAESGSLDTAAMT 120

Query:   143 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLI 202
             +EK A  L+      AL +Y R   +    D  K A+ ++ +  ++ +++ ++  A   I
Sbjct:   121 VEKAADVLKNDNPKEALQIYQRGLALVQQSDRAKMASNFLKQITKLSLQLTDYKGALGSI 180

Query:   203 RQEIGYHQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCEAPEVQT------ 256
             R+EI    E      IG+             D+VAA K +  W   C++P+ QT      
Sbjct:   181 REEIEKFAEIREYPRIGQLGIGLVIVNLALEDSVAALKDYG-WV-ICQSPDFQTSEDGRV 238

Query:   257 LEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPS 299
              E L+  ++  D E  +  L    ++ MD EY R+ + L  PS
Sbjct:   239 CENLIGFYEAGDDESFQNVLKCGALRSMDNEYLRVMKILKAPS 281

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99747	SNAG_HUMAN	No assigned EC number	0.3802	0.8646	0.9006	yes	N/A
Q9SPE5	SNAG_ARATH	No assigned EC number	0.2633	0.8338	0.9312	yes	N/A
P81127	SNAG_BOVIN	No assigned EC number	0.3890	0.8369	0.8717	yes	N/A
Q9CWZ7	SNAG_MOUSE	No assigned EC number	0.3802	0.8646	0.9006	yes	N/A
Q9U9R7	SNAG_DICDI	No assigned EC number	0.2733	0.8492	0.8518	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	325
pfam13449	324	pfam13449, Phytase-like, Esterase-like activity of	0.001

>gnl|CDD|222139 pfam13449, Phytase-like, Esterase-like activity of phytase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 270 EGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAP 316
           EG R     PF++  D++  RL R+LPLP+A    P    +R N   
Sbjct: 103 EGDRSRGIPPFLRRFDLD-GRLLRELPLPAAFLPGPGKQGVRNNLGF 148

This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	100.0
KOG1585|consensus	308		100.0
KOG1586|consensus	288		100.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.89
KOG1130|consensus	639		99.87
KOG1130|consensus	639		99.86
KOG1840|consensus	508		99.85
KOG1840|consensus	508		99.83
KOG1586|consensus	288		99.83
KOG4626|consensus	966		99.81
KOG4626|consensus	966		99.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.57
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.57
KOG1585|consensus	308		99.55
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.48
KOG1941|consensus	518		99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.44
KOG2003|consensus	840		99.43
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.42
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.41
PRK04841	903	transcriptional regulator MalT; Provisional	99.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.38
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.33
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.31
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.3
PRK12370	553	invasion protein regulator; Provisional	99.29
KOG1155|consensus	559		99.28
PRK04841	903	transcriptional regulator MalT; Provisional	99.26
KOG1155|consensus	559		99.23
KOG1941|consensus	518		99.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.21
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.2
KOG2002|consensus	1018		99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.2
KOG1129|consensus	478		99.15
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.14
KOG1126|consensus	638		99.13
KOG1173|consensus	611		99.12
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
KOG0548|consensus	539		99.1
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.09
PRK12370	553	invasion protein regulator; Provisional	99.08
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.08
KOG1126|consensus	638		99.04
KOG2076|consensus	895		99.04
KOG2002|consensus	1018		99.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.97
PRK11189	296	lipoprotein NlpI; Provisional	98.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
KOG0547|consensus	606		98.94
KOG1173|consensus	611		98.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.93
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.9
PLN03218	1060	maturation of RBCL 1; Provisional	98.89
KOG1129|consensus	478		98.86
KOG2003|consensus	840		98.85
KOG1125|consensus	579		98.83
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.82
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.82
PLN03218	1060	maturation of RBCL 1; Provisional	98.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.75
KOG0547|consensus	606		98.73
KOG0548|consensus	539		98.72
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.71
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.68
PRK15359	144	type III secretion system chaperone protein SscB;	98.67
KOG2076|consensus	895		98.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.65
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.64
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
KOG0550|consensus	486		98.6
PRK15359	144	type III secretion system chaperone protein SscB;	98.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.58
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.58
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.57
PLN03077	857	Protein ECB2; Provisional	98.56
KOG3617|consensus	1416		98.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.54
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.53
PLN03077	857	Protein ECB2; Provisional	98.51
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.46
KOG1125|consensus	579		98.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.38
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
KOG0553|consensus	304		98.36
PLN02789	320	farnesyltranstransferase	98.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.31
KOG1174|consensus	564		98.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.29
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.27
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.24
KOG0553|consensus	304		98.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
PRK10803	263	tol-pal system protein YbgF; Provisional	98.21
KOG4162|consensus	799		98.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.19
KOG0550|consensus	486		98.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.15
PF12688	120	TPR_5: Tetratrico peptide repeat	98.14
PRK10803	263	tol-pal system protein YbgF; Provisional	98.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.08
KOG1156|consensus	700		98.07
PF12688	120	TPR_5: Tetratrico peptide repeat	98.05
KOG0495|consensus	913		98.04
KOG3617|consensus	1416		98.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.02
KOG1464|consensus	440		98.0
PLN02789	320	farnesyltranstransferase	98.0
KOG4162|consensus	799		98.0
KOG0543|consensus	397		97.99
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.95
KOG0624|consensus	504		97.95
KOG3060|consensus	289		97.94
KOG1127|consensus	1238		97.9
KOG1127|consensus	1238		97.87
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.86
KOG0543|consensus	397		97.83
KOG4555|consensus	175		97.8
KOG2300|consensus	629		97.75
KOG1128|consensus	777		97.74
KOG2376|consensus	652		97.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.73
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.72
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.72
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.71
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.71
KOG3785|consensus	557		97.7
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.65
KOG3616|consensus	1636		97.63
KOG4555|consensus	175		97.63
KOG3060|consensus	289		97.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.59
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.57
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	97.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.55
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.51
KOG1128|consensus	777		97.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.49
KOG0495|consensus	913		97.47
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.47
KOG1174|consensus	564		97.46
KOG0624|consensus	504		97.42
PF13371	73	TPR_9: Tetratricopeptide repeat	97.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.38
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.37
KOG1156|consensus	700		97.37
KOG1070|consensus	1710		97.36
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.36
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.36
PF13512	142	TPR_18: Tetratricopeptide repeat	97.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.31
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.25
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.19
KOG4340|consensus	459		97.16
KOG2300|consensus	629		97.15
KOG4234|consensus	271		97.14
KOG3616|consensus	1636		97.13
PRK15331	165	chaperone protein SicA; Provisional	97.13
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.12
KOG4340|consensus	459		97.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.1
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.07
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.05
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.04
PF13371	73	TPR_9: Tetratricopeptide repeat	97.03
KOG2047|consensus	835		97.02
KOG4234|consensus	271		97.02
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.02
KOG2581|consensus	493		97.01
KOG2376|consensus	652		97.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.94
KOG2041|consensus	1189		96.94
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.92
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.87
KOG4648|consensus	536		96.86
KOG1463|consensus	411		96.85
KOG1464|consensus	440		96.84
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.81
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.79
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.78
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.73
KOG1839|consensus	1236		96.73
PRK15331	165	chaperone protein SicA; Provisional	96.73
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.72
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.71
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.64
KOG1463|consensus	411		96.62
KOG2047|consensus	835		96.57
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.57
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.48
KOG2471|consensus	696		96.48
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.41
PF13512	142	TPR_18: Tetratricopeptide repeat	96.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.29
KOG0551|consensus	390		96.29
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.28
KOG1839|consensus	1236		96.24
PF13431	34	TPR_17: Tetratricopeptide repeat	96.2
KOG3081|consensus	299		96.14
KOG0551|consensus	390		96.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.98
KOG4648|consensus	536		95.97
KOG1070|consensus	1710		95.95
KOG3081|consensus	299		95.9
KOG0687|consensus	393		95.84
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.8
KOG4642|consensus	284		95.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.7
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	95.48
KOG1538|consensus	1081		95.46
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	95.4
KOG4642|consensus	284		95.38
KOG2581|consensus	493		95.36
KOG2796|consensus	366		95.28
COG5187	412	RPN7 26S proteasome regulatory complex component,	95.27
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.25
PF13428	44	TPR_14: Tetratricopeptide repeat	95.22
KOG2041|consensus	1189		94.96
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.88
PRK11906	458	transcriptional regulator; Provisional	94.85
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.76
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.66
KOG2471|consensus	696		94.64
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.62
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.61
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.37
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.21
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.2
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.13
KOG3024|consensus	312		94.07
KOG3785|consensus	557		94.06
KOG2610|consensus	491		94.0
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.97
KOG4507|consensus	886		93.94
KOG4322|consensus	482		93.93
KOG4322|consensus	482		93.9
PF13428	44	TPR_14: Tetratricopeptide repeat	93.77
KOG2796|consensus	366		93.69
KOG0545|consensus	329		93.61
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.55
KOG0545|consensus	329		93.55
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	93.45
PF13431	34	TPR_17: Tetratricopeptide repeat	93.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.12
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.78
KOG4814|consensus	872		92.67
KOG0686|consensus	466		92.52
KOG1915|consensus	677		92.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.61
KOG1538|consensus	1081		91.55
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.35
KOG4521|consensus	1480		91.35
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.3
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.79
KOG1920|consensus	1265		90.75
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.62
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.42
KOG1550|consensus	552		89.63
KOG0687|consensus	393		89.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.07
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.61
KOG4507|consensus	886		88.35
KOG3024|consensus	312		88.26
PRK11906	458	transcriptional regulator; Provisional	88.17
KOG1550|consensus	552		88.0
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.52
KOG3783|consensus	546		87.15
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.14
KOG4814|consensus	872		87.1
KOG2114|consensus	933		86.35
KOG0686|consensus	466		86.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.09
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.09
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.61
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.34
KOG2053|consensus	932		85.04
PRK10941	269	hypothetical protein; Provisional	83.9
KOG2908|consensus	380		83.8
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.14
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.9
KOG3364|consensus	149		82.26
COG5187	412	RPN7 26S proteasome regulatory complex component,	82.08
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.02
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.01
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.75
PF12854	34	PPR_1: PPR repeat	81.55
KOG1497|consensus	399		80.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.6
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.54

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=100.00  E-value=6.1e-37  Score=273.38  Aligned_cols=263  Identities=31%  Similarity=0.426  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHhhhccc--cc----CCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         33 EGMEYVKSAEKHLKTS--LL----KWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        33 eA~~l~~~A~~~~~~~--~~----~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      +|.+++++|++.++++  +|    .|+++|++|+++|.+||++|+..++|++|.++|.++++++.+.++...++.+|.++
T Consensus         2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~A   81 (282)
T PF14938_consen    2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEA   81 (282)
T ss_dssp             HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555555555432  21    23579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      +.+|.+. ++++|+++|++|+++|...|++..++.++.++|.+|+.. + +++|+++|++|+++++..+.......++.+
T Consensus        82 a~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   82 ANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            9999986 999999999999999999999999999999999999998 5 999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEK  259 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~  259 (325)
                      +|.++.++|+|++|++.|++....+.+.+ ........++..++|++..||+..|.+.|+++    +.|.+++|++++.+
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~  240 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED  240 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            99999999999999999999887654433 24456667889999999999999999999997    78999999999999


Q ss_pred             HHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061        260 LLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       260 L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~  296 (325)
                      |+++++.||++.+.+++.. +.+..||+|.+.|+.+++
T Consensus       241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k  278 (282)
T PF14938_consen  241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK  278 (282)
T ss_dssp             HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence            9999999999999999999 999999999999998764

>KOG1585|consensus

Probab=100.00  E-value=1.6e-33  Score=233.35  Aligned_cols=265  Identities=37%  Similarity=0.567  Sum_probs=247.7

Q ss_pred             HHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         39 KSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTD  118 (325)
Q Consensus        39 ~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~e  118 (325)
                      .++.+........|++||+.|+..|.+++.+|++.++|++|..++.+|.+.++....++.+|.+|+.++.+..++..+.|
T Consensus        10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsE   89 (308)
T KOG1585|consen   10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSE   89 (308)
T ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333333333448999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10061        119 VENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA  198 (325)
Q Consensus       119 A~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  198 (325)
                      ++.+|++|..+|.+.|.++.++.++.+.|.+.+..+++.|+.+|++++.+++..+....+.+.+..++.++++..++.+|
T Consensus        90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen   90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061        199 ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNCCEAPEVQTLEKLLQAFDEEDPEGARQA  275 (325)
Q Consensus       199 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~  275 (325)
                      ...+.+-..+..+...+......+...+++|+...||..|..+++.+   +.|..+++++.+.+|+.+|+.||++.+...
T Consensus       170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kv  249 (308)
T KOG1585|consen  170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKV  249 (308)
T ss_pred             HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHH
Confidence            99999988888888777778888899999999999999999999995   999999999999999999999999999999


Q ss_pred             hcChhhhcccHHHHHHhhcCCCCCCCCC
Q psy10061        276 LNDPFIKHMDVEYSRLARDLPLPSATCA  303 (325)
Q Consensus       276 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~  303 (325)
                      +..+.++.||+++.++-++|++|+++--
T Consensus       250 l~sp~~r~MDneya~l~kdl~~P~gn~~  277 (308)
T KOG1585|consen  250 LSSPTVRNMDNEYAHLNKDLSNPNGNYV  277 (308)
T ss_pred             HcChHhhhhhHHHHHHhhccCCCCCCcc
Confidence            9999999999999999999999999643

>KOG1586|consensus

Probab=100.00  E-value=7.3e-33  Score=228.08  Aligned_cols=268  Identities=22%  Similarity=0.269  Sum_probs=234.4

Q ss_pred             hhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061          8 EEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAA   87 (325)
Q Consensus         8 ~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~   87 (325)
                      +++.+|+++|||.++++..+.                    +|.++..+++|+++|.+++++|+..++|+.|..+|.+++
T Consensus         2 ~~a~~l~k~AEkK~~~s~gF~--------------------lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA   61 (288)
T KOG1586|consen    2 SDAVQLMKKAEKKLNGSGGFL--------------------LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAA   61 (288)
T ss_pred             ccHHHHHHHHHHhcccCCccc--------------------ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            466777777777777543321                    122356788888888889999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHH
Q psy10061         88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRA  165 (325)
Q Consensus        88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~A  165 (325)
                      +++.+.++...++.+|..++++|.+ +++.+|+.+++++++||...|.+..+++.+..+|.+|+.. . +++||.+|++|
T Consensus        62 ~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A  140 (288)
T KOG1586|consen   62 DLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA  140 (288)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 5999999999999999999999999999999999999976 4 99999999999


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      .+.|........+..++.+.+..-..+++|.+|++.|++...-....+ ..+..-..++..|+||+...|...+...+++
T Consensus       141 ae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek  220 (288)
T KOG1586|consen  141 AEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK  220 (288)
T ss_pred             HHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence            999998888888899999999999999999999999999876433332 2344556788999999999998888888887


Q ss_pred             h----cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061        245 W----GNCCEAPEVQTLEKLLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       245 ~----~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~  296 (325)
                      +    |.|.+++|+++|..|.++++.+|.+.+.++++. +.+.+||.|.+.|+.+++
T Consensus       221 y~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK  277 (288)
T KOG1586|consen  221 YQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK  277 (288)
T ss_pred             HHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            6    899999999999999999999999999999999 999999999999998876

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.89  E-value=7.7e-21  Score=169.72  Aligned_cols=248  Identities=22%  Similarity=0.252  Sum_probs=179.7

Q ss_pred             hhhhHHHHHHhhchhc---cc---cc-cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC------
Q psy10061          8 EEGMEYVKSAEKHSLS---TM---TS-DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK------   74 (325)
Q Consensus         8 ~~~~~~~~~ae~~~~~---~~---~~-~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g------   74 (325)
                      ++|++|+++|||.+++   ||   .+ ++++++|.++|.+|.+.++.     .++|++|+++|.+++.++...+      
T Consensus         1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~-----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa   75 (282)
T PF14938_consen    1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKL-----AKDWEKAAEAYEKAADCYEKLGDKFEAA   75 (282)
T ss_dssp             -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHH-----TT-CHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHH-----HhccchhHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999994   33   22 35999999999999999987     4666777777766665544333      


Q ss_pred             -------------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         75 -------------SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        75 -------------~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                                   ++++|+++|.+|++++...|++..++.++.++|.+|... |++++|+++|++|+++|...|+...+.
T Consensus        76 ~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~  155 (282)
T PF14938_consen   76 KAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA  155 (282)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence                         678888888888888999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      .++.++|.++...+ |++|+..|++.+......+ ........+...+.++...|++..|...+++.....+...+ ...
T Consensus       156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E  234 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SRE  234 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHH
Confidence            99999999999988 9999999999988665443 23455667788999999999999999888887665443322 233


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHH--HHHHHHHH
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEV--QTLEKLLQ  262 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~--~~l~~L~~  262 (325)
                      ..+...|..++-. ||.+.-.+...+++.+...+.+  .+|..+-+
T Consensus       235 ~~~~~~l~~A~~~-~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~  279 (282)
T PF14938_consen  235 YKFLEDLLEAYEE-GDVEAFTEAVAEYDSISRLDNWKTKMLLKIKK  279 (282)
T ss_dssp             HHHHHHHHHHHHT-T-CCCHHHHCHHHTTSS---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence            4455555555543 3433333333334444444444  34544443

>KOG1130|consensus

Probab=99.87  E-value=1e-21  Score=174.34  Aligned_cols=244  Identities=14%  Similarity=0.071  Sum_probs=216.2

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++.....+|+.|.+.-       ..|+.--...|.++|++|..+++|.+|+++...=+.+.+.+|+..+.|.+.-|+|
T Consensus        30 ~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             ccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            357888899998887754       3677888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------------------C-HHHHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--------------------K-SDAALTLYSRAA  166 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--------------------~-~~~A~~~y~~Al  166 (325)
                      +++..+|.|++|+.+..+-+++.+++||....+++|.++|.+|...                    . ++.|.++|.+-+
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999763                    1 466778888888


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-  245 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-  245 (325)
                      ++.+..++......++.++|..|+-+|+|+.|+...+.-|+|.++.|++....+++.+||.||...|+++.|.++|... 
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence            8888888888888899999999999999999999999999999999999888889999999999999999999999984 


Q ss_pred             ----cccCCChHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061        246 ----GNCCEAPEVQTLEKLLQAFD-EEDPEGARQALND  278 (325)
Q Consensus       246 ----~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~~~~~  278 (325)
                          ..-....|+.....|+++|. ..+.+.+.+...+
T Consensus       263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                34456778888888888875 6677777776665

>KOG1130|consensus

Probab=99.86  E-value=1.8e-20  Score=166.38  Aligned_cols=267  Identities=11%  Similarity=0.028  Sum_probs=225.8

Q ss_pred             hhhhhhHHHHHHhhchhc-------c-------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS-------T-------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK   71 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~-------~-------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~   71 (325)
                      +|..+-.|++.|-...--       +       ++.-++|.+|+++..-=+.+.+.     -+|-..-+..--++|+.++
T Consensus        32 dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-----lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130|consen   32 DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-----LGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-----hcchhccccccccccchhh
Confidence            456667777776553320       1       11224788888888877666654     2455555566668899999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL  131 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~  131 (325)
                      ..|.|++|+.|..+-+++.+++||....++++.|+|++|...|+                    ++.|+++|..=+++.+
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987654                    4567778888888888


Q ss_pred             HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      +.||.....+++.++|+.|.-.+ |++|+.+-+.-+.|.++-|+......++.++|.+|+-+|+++.|+++|+.++.++.
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence            89999999999999999999988 99999999999999999999888888999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061        211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALN  277 (325)
Q Consensus       211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~  277 (325)
                      +++++...+..-+.+|..|....++.+|+.++++-     ..-+...|.+..-.|+.++ ..|..+.+.-...
T Consensus       267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999888889999999999999999999999994     3346778899999999998 5888887665543

>KOG1840|consensus

Probab=99.85  E-value=2.9e-18  Score=161.31  Aligned_cols=248  Identities=14%  Similarity=0.149  Sum_probs=213.5

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQ  105 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~  105 (325)
                      .++|++|+.+++.|.....+..   +-+......+-..+|.+|..++++.+|+..|.+|+.+.+..  .+....+..+.+
T Consensus       212 ~g~~e~A~~l~k~Al~~l~k~~---G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  212 QGRLEKAEPLCKQALRILEKTS---GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHcc---CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4689999999999999886643   35667777778889999999999999999999999999965  477889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAE  180 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~  180 (325)
                      ++.+|.+.|++++|..++++|++|+.+.  -+...++..+.+++.++...+ +++|+.+|+++++++... + +....+.
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence            9999999999999999999999999883  457788899999999999887 999999999999999843 2 3447788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc--CCCh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC--CEAP  252 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~--~~~~  252 (325)
                      ++.++|.+|..+|+|.+|.++|++++.+.++.+.  ....+..+..+|..|...+.+.+|...|.++    ..|  +..+
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~  448 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999988753  4566778899999999999999999999996    233  2333


Q ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061        253 EVQTLEKLLQAFD-EEDPEGARQALND  278 (325)
Q Consensus       253 e~~~l~~L~~a~~-~gd~~~~~~~~~~  278 (325)
                      --..+.+|+-+|+ .|..+++.+....
T Consensus       449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  449 VTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4457778999995 9999998887554

>KOG1840|consensus

Probab=99.83  E-value=3.7e-18  Score=160.65  Aligned_cols=239  Identities=16%  Similarity=0.182  Sum_probs=208.1

Q ss_pred             cchhhhhhHHHHHHhhchh-c-----------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHH
Q psy10061          4 DRKKEEGMEYVKSAEKHSL-S-----------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK   65 (325)
Q Consensus         4 ~~~~~~~~~~~~~ae~~~~-~-----------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~   65 (325)
                      +.+.++|.++++.|-..+. .                 ++...++|.+|+.+|++|++.....+   +++.+..+..+.+
T Consensus       212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~---G~~h~~va~~l~n  288 (508)
T KOG1840|consen  212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF---GEDHPAVAATLNN  288 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence            3457888899988877742 1                 12334799999999999999998753   6889999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHH-HHHH
Q psy10061         66 AATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNRE-AAST  141 (325)
Q Consensus        66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~-~aa~  141 (325)
                      ++.+|...|+|++|..++.+|.+|+++.  .+....+..+.+++.++..++++++|..++++++.++... |... ..+.
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence            9999999999999999999999999983  3677889999999999999999999999999999999853 5444 7889


Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN--YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLA  217 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~  217 (325)
                      .+.++|.+|...+ +.+|.++|++|+.+.++.+.  .......+.++|..|.+.+++.+|..+|.+++.|.+..|. ...
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~  448 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999999998 99999999999999987643  5666789999999999999999999999999999976663 334


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ....+.+|+.+|..+|+++.|.++.+..
T Consensus       449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  449 VTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            5567899999999999999999998885

>KOG1586|consensus

Probab=99.83  E-value=6.7e-18  Score=139.88  Aligned_cols=237  Identities=19%  Similarity=0.190  Sum_probs=164.8

Q ss_pred             hhccc--cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH
Q psy10061         21 SLSTM--TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH   98 (325)
Q Consensus        21 ~~~~~--~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~   98 (325)
                      ..||+  .++++|++|.++|.+|.+.++.     .++|..|..+|-+++.++.+.|+-++|...|..|..+|++. ++..
T Consensus        18 s~gF~lfgg~~k~eeAadl~~~Aan~ykl-----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~e   91 (288)
T KOG1586|consen   18 SGGFLLFGGSNKYEEAAELYERAANMYKL-----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEE   91 (288)
T ss_pred             CCcccccCCCcchHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHH
Confidence            35553  3346999999999999999987     58999999999999999999999999999999999999988 8999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      ++.++.++.++|.++|+|..|..++....++|+.. .|+.+++.+|...|.+|.... ...|-+|+.++..+....+.+.
T Consensus        92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~  171 (288)
T KOG1586|consen   92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS  171 (288)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887 899999999999999998764 4444444444433333333333


Q ss_pred             hHHH---------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061        177 QAAE---------------------YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT  235 (325)
Q Consensus       177 ~~~~---------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~  235 (325)
                      .++.                     .+...|.++.-..+.-.+-..+++-.++.+...+ ......+-.|... ...+|.
T Consensus       172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d-sREckflk~L~~a-ieE~d~  249 (288)
T KOG1586|consen  172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD-SRECKFLKDLLDA-IEEQDI  249 (288)
T ss_pred             HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc-cHHHHHHHHHHHH-HhhhhH
Confidence            3333                     3444555555544444433333332222222211 1222232222222 334455


Q ss_pred             HHHHHHHHhhcccCCChHHH--HHHHHHHHHh
Q psy10061        236 VAAEKAFKEWGNCCEAPEVQ--TLEKLLQAFD  265 (325)
Q Consensus       236 ~~A~~~~~~~~~~~~~~e~~--~l~~L~~a~~  265 (325)
                      +.--+...+++.+.+.+.+.  +|..+...+.
T Consensus       250 e~fte~vkefDsisrLD~W~ttiLlkiK~siq  281 (288)
T KOG1586|consen  250 EKFTEVVKEFDSISRLDQWKTTILLKIKKSIQ  281 (288)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHHh
Confidence            55555555557777666664  5556666654

>KOG4626|consensus

Probab=99.81  E-value=3.6e-19  Score=165.05  Aligned_cols=209  Identities=15%  Similarity=0.137  Sum_probs=139.7

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAAN------------------   88 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~------------------   88 (325)
                      ..|+...|+.+|.+|.++-.        +|.   ++|.++|++|+..+.|++|+.+|.+|+.                  
T Consensus       230 ~~Gei~~aiq~y~eAvkldP--------~f~---dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye  298 (966)
T KOG4626|consen  230 AQGEIWLAIQHYEEAVKLDP--------NFL---DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE  298 (966)
T ss_pred             hcchHHHHHHHHHHhhcCCC--------cch---HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence            34678888888888876542        222   3344555555555555555555555543                  


Q ss_pred             ----------------HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q psy10061         89 ----------------CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE  152 (325)
Q Consensus        89 ----------------~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~  152 (325)
                                      +.....      .+|+|+++...+.|+..+|+++|.+|+.+.-..      +.+++++|.+|..
T Consensus       299 qG~ldlAI~~Ykral~~~P~F~------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E  366 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALELQPNFP------DAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYRE  366 (966)
T ss_pred             cccHHHHHHHHHHHHhcCCCch------HHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHH
Confidence                            333221      245555555555555555555555555442211      2246678999988


Q ss_pred             cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      .+ ++.|..+|.+|++++...      +.+.+++|.+|.++|++++|+.+|+++|.|.+      .-+.++.++|..|-.
T Consensus       367 ~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P------~fAda~~NmGnt~ke  434 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP------TFADALSNMGNTYKE  434 (966)
T ss_pred             hccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc------hHHHHHHhcchHHHH
Confidence            87 899999999999887653      56788999999999999999999999988742      234577888888888


Q ss_pred             cCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHHH
Q psy10061        232 RGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQA  275 (325)
Q Consensus       232 ~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~  275 (325)
                      +||...|+.+|.++    +.|     +.+-.+|+.++ +.|+...+.+.
T Consensus       435 ~g~v~~A~q~y~rAI~~nPt~-----AeAhsNLasi~kDsGni~~AI~s  478 (966)
T KOG4626|consen  435 MGDVSAAIQCYTRAIQINPTF-----AEAHSNLASIYKDSGNIPEAIQS  478 (966)
T ss_pred             hhhHHHHHHHHHHHHhcCcHH-----HHHHhhHHHHhhccCCcHHHHHH
Confidence            88888888888886    444     34566777777 47776655443

>KOG4626|consensus

Probab=99.74  E-value=1.3e-16  Score=148.20  Aligned_cols=215  Identities=14%  Similarity=0.120  Sum_probs=172.8

Q ss_pred             hhhhhHHHHHHhhchh----cccccc------ccHHHHHHHHHHHHhhhccc---------ccCCCCCHHHHHHHHHHH-
Q psy10061          7 KEEGMEYVKSAEKHSL----STMTSD------RKKEEGMEYVKSAEKHLKTS---------LLKWKPDYDSAADDYSKA-   66 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~----~~~~~~------~~~~eA~~l~~~A~~~~~~~---------~~~~~~~~~~A~~~y~~a-   66 (325)
                      .-.|.+.+.||-|.=-    -|...+      ..|++|...|.+|+.+....         +..-.+..+-|+++|.++ 
T Consensus       234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence            3455666666655322    143322      46888888888887765431         111146777777776665 


Q ss_pred             -------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         67 -------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        67 -------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                                   ++..+..|+..+|.++|.+++.+....      +++++|+|++|.++|.+++|..+|.+|++++   
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~---  384 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVF---  384 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence                         678889999999999999999887543      6799999999999999999999999999984   


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                         ..-+...+++|.+|.+++ +++|+.+|++|+.|...      .+++++++|.+|-.+|+.+.|+..|.+++.+-+  
T Consensus       385 ---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--  453 (966)
T KOG4626|consen  385 ---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--  453 (966)
T ss_pred             ---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--
Confidence               455668999999999998 99999999999988543      367999999999999999999999999998632  


Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                          .-+.++.+++.+|-..|+...|+..|+.+
T Consensus       454 ----t~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  454 ----TFAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             ----HHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence                34567889999999999999999999997

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.59  E-value=3.4e-12  Score=119.10  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      ..+..+|.+|...|++++|..+|.++.+..      .....++..++.+|...|++++|++.+++++....... ....+
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~  180 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIA  180 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHH
Confidence            345566788888888998888888876541      12345778888899999999999999888776532221 12334


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ..+..+|.++...+ +++|+.+|++++++.+..      ..++..+|.+|...|++++|+.+|++++...     +....
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~  249 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQD-----PEYLS  249 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhhHH
Confidence            56778888887776 999999999999875432      3467789999999999999999999998752     22233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcCh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDP  279 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~  279 (325)
                      ..+..++.+|...|++++|...++++ ....+.   .....++..+ ..|+.+.+...+.+.
T Consensus       250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---DLLLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45678999999999999999999997 222222   2335677776 689999999988873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.59  E-value=2.8e-13  Score=133.97  Aligned_cols=230  Identities=12%  Similarity=0.028  Sum_probs=158.1

Q ss_pred             ccHHHHHHHHHHHHhhhc--c---------ccc-CCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLK--T---------SLL-KWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEY   82 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~--~---------~~~-~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~   82 (325)
                      ++|++|++.|.++.+...  .         +.+ ...+++++|...|+++              |.++...|++++|..+
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            678888888888876421  0         101 0146666666666654              4566777888888888


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH
Q psy10061         83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL  161 (325)
Q Consensus        83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~  161 (325)
                      |.+++++...  +    ..++..+|.+|...|++++|+.+|++++++...      -...+.++|.++...+ +++|+..
T Consensus       388 ~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~  455 (615)
T TIGR00990       388 FDKALKLNSE--D----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMAT  455 (615)
T ss_pred             HHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8888765322  1    357778888888888888888888888776332      1235678888888877 9999999


Q ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061        162 YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEK  240 (325)
Q Consensus       162 y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~gd~~~A~~  240 (325)
                      |++++.+++..      ..++..+|.++..+|++++|+..|++++.+.+...... .....+...+.++...|++++|..
T Consensus       456 ~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       456 FRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99988876543      35778889999999999999999999988765432211 111122333344445789999999


Q ss_pred             HHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        241 AFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       241 ~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .++++ ..-...  ..++..|++++ ..|+.+.+...+.+
T Consensus       530 ~~~kAl~l~p~~--~~a~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       530 LCEKALIIDPEC--DIAVATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHhcCCCc--HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99987 222222  23566788887 68999988887766

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.57  E-value=8.7e-13  Score=130.47  Aligned_cols=220  Identities=13%  Similarity=-0.028  Sum_probs=166.1

Q ss_pred             HHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Q psy10061         34 GMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL  113 (325)
Q Consensus        34 A~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~  113 (325)
                      +.+.|.+|.+.+.+.+-. ....+..+..+...|.++...|++++|+..|.+++.+...      ...++..+|.++..+
T Consensus       306 ~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~  378 (615)
T TIGR00990       306 ADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLEL  378 (615)
T ss_pred             hhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHC
Confidence            345677888877764421 1223455677888899999999999999999999887543      245788999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc
Q psy10061        114 NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV  192 (325)
Q Consensus       114 g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  192 (325)
                      |++++|+.++++++++..  .+    ..++..+|.++...+ +++|+.+|++++++....      ...+.++|.++.++
T Consensus       379 g~~~eA~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~  446 (615)
T TIGR00990       379 GDPDKAEEDFDKALKLNS--ED----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKE  446 (615)
T ss_pred             CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHC
Confidence            999999999999987622  12    347889999999887 999999999999876542      35678999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCCh-H-HHHHHHHHHHHh-
Q psy10061        193 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAP-E-VQTLEKLLQAFD-  265 (325)
Q Consensus       193 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~-e-~~~l~~L~~a~~-  265 (325)
                      |++++|+..|++++.+.+..      ..+++.+|.++...|++++|++.|+++    +...... . ...+...+..+. 
T Consensus       447 g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       447 GSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            99999999999999864322      246678999999999999999999997    2221111 1 111222222333 


Q ss_pred             cCCHHHHHHHhcC
Q psy10061        266 EEDPEGARQALND  278 (325)
Q Consensus       266 ~gd~~~~~~~~~~  278 (325)
                      .|+.+.+...+++
T Consensus       521 ~~~~~eA~~~~~k  533 (615)
T TIGR00990       521 KQDFIEAENLCEK  533 (615)
T ss_pred             hhhHHHHHHHHHH
Confidence            5888888888776

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.57  E-value=1.6e-12  Score=121.23  Aligned_cols=226  Identities=14%  Similarity=0.113  Sum_probs=172.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+.+|.++.+..        ++   -.+.+..++.++...|++++|...+.+++..-  ..........+..+
T Consensus        47 ~~~~~~~A~~~~~~al~~~--------p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~L  113 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVD--------PE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQEL  113 (389)
T ss_pred             hcCChHHHHHHHHHHHhcC--------cc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Confidence            3478999999999988753        21   24677889999999999999999998876521  11223345688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|...|++++|+.+++++++.   .   .....++..++.++...+ +++|+..+++++........ ......+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~---~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l  186 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDE---G---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCEL  186 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcC---C---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence            99999999999999999998764   1   123456888999998887 99999999998876543222 2234467789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-  264 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-  264 (325)
                      |.++..+|++++|+.+|++++.+.+..      ..++..+|.++...|++++|.+.|+++....+.....++..|+.++ 
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~  260 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ  260 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence            999999999999999999998864321      2356779999999999999999999982222222234566778887 


Q ss_pred             hcCCHHHHHHHhcC
Q psy10061        265 DEEDPEGARQALND  278 (325)
Q Consensus       265 ~~gd~~~~~~~~~~  278 (325)
                      ..|+.+.+...+++
T Consensus       261 ~~g~~~~A~~~l~~  274 (389)
T PRK11788        261 ALGDEAEGLEFLRR  274 (389)
T ss_pred             HcCCHHHHHHHHHH
Confidence            68999999888776

>KOG1585|consensus

Probab=99.55  E-value=2.1e-12  Score=108.20  Aligned_cols=230  Identities=19%  Similarity=0.132  Sum_probs=168.6

Q ss_pred             hhhhhhHHHHHHhhchh-cc-------------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSL-ST-------------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK   71 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~-~~-------------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~   71 (325)
                      |.+++.+++++.++--+ -|             |+...+|++|...+.+|.+....     +..+-+|+..|++++.+.+
T Consensus         8 ki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-----nrslfhAAKayEqaamLak   82 (308)
T KOG1585|consen    8 KISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-----NRSLFHAAKAYEQAAMLAK   82 (308)
T ss_pred             HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHH
Confidence            47888888888887422 11             12234566666666666555544     4677888899999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      ....+.++.++|++|..+|.+.|.+..++.++..++.+... .++++|+..|++++.++...+....+...+..++.++.
T Consensus        83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen   83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence            99999999999999999999999999999999999988665 68999999999999999999999999999999999999


Q ss_pred             ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061        152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL  230 (325)
Q Consensus       152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~  230 (325)
                      ..+ +++|...+.+-..+.............+.....+|.-..+|..|..+|+..-.+-.-.  .....+.+.++... +
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~a-y  238 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTA-Y  238 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHH-h
Confidence            887 8888888877777766655555555556555566666779999998887643321111  12233444444444 4


Q ss_pred             hcCCHHHHHHHHHh
Q psy10061        231 ARGDTVAAEKAFKE  244 (325)
Q Consensus       231 ~~gd~~~A~~~~~~  244 (325)
                      ..||.++..+.+..
T Consensus       239 d~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  239 DEGDIEEIKKVLSS  252 (308)
T ss_pred             ccCCHHHHHHHHcC
Confidence            56777777666544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.48  E-value=1.3e-11  Score=105.57  Aligned_cols=201  Identities=17%  Similarity=0.165  Sum_probs=156.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      .+.+..+..+..++.++...|++++|...+.+++.....      ...++..+|.+|...|++++|+.++++++++....
T Consensus        25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN   98 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            455667888999999999999999999999999766422      24678889999999999999999999998764322


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                            ...+.++|.++...+ +++|+.+|++++....    .......+..+|.++...|++++|..+|.+++...+..
T Consensus        99 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521        99 ------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             ------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence                  246788899998887 9999999999987422    12223567789999999999999999999998864321


Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                            ...+..++.++...|++++|...++++ .....  ....+..++..+ ..|+.+.+...++.
T Consensus       169 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       169 ------PESLLELAELYYLRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                  235678999999999999999999998 33222  233344455555 58888888776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1941|consensus

Probab=99.46  E-value=2e-11  Score=107.71  Aligned_cols=212  Identities=15%  Similarity=0.093  Sum_probs=184.6

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--ChH--HHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SAY--HAAKHLE  104 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~~--~aa~~~~  104 (325)
                      +-++++++.|++|.++...     .+|..--...|.-+|.+|..++++++|+.+..+|+++.+..+  ++.  --+-++.
T Consensus       136 s~fq~~Lesfe~A~~~A~~-----~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHN-----NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhc-----cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            3589999999999998875     355555567888999999999999999999999999999775  332  2345667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      .++..++.+|+...|.++.++|..+..+.||....+.++.-+|.||...+ .+.|..-|++|..+....||.....+++.
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~  290 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALD  290 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            78888999999999999999999999999999999999999999999887 99999999999999999999998888998


Q ss_pred             HHHHHHHHcCCHHH-----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        184 RAARMCVRVKEFDK-----AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       184 ~lg~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+.......-..+     |++.-++.++++.++|....+-+.+..++.+|..+|+-++-...+.++
T Consensus       291 g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra  357 (518)
T KOG1941|consen  291 GAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA  357 (518)
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            88887766654444     999999999999999988888889999999999999888877777764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.44  E-value=2.9e-11  Score=100.85  Aligned_cols=201  Identities=15%  Similarity=0.173  Sum_probs=164.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      .+...+++...++|.-|...|++..|..-+++|++.-.+.      ..++.-++.+|...|+.+.|-+.|++|+.+-...
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            5678999999999999999999999999999999876543      4578888999999999999999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      |+      +++|-|..+=..+ |++|..++++|+.    ...+...+.++.|+|.+..++|+.+.|..+|+++|++.++.
T Consensus       103 Gd------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         103 GD------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             cc------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            88      6899999888777 9999999999985    23444556799999999999999999999999999986554


Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..      ....+...++..||+..|.-+++++ ....  -.+..|--.++.- ..||.+.+...-.+
T Consensus       173 ~~------~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~q  232 (250)
T COG3063         173 PP------ALLELARLHYKAGDYAPARLYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQ  232 (250)
T ss_pred             Ch------HHHHHHHHHHhcccchHHHHHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            32      3356788899999999999999998 3332  2233343334433 58888887776544

>KOG2003|consensus

Probab=99.43  E-value=3.1e-11  Score=109.25  Aligned_cols=237  Identities=16%  Similarity=0.114  Sum_probs=174.1

Q ss_pred             cccccccHHHHHHHHHHHHhhhc--------ccc-cCCCCCHHHHHHHHHHHH--------------HHHHhcCCHHHHH
Q psy10061         24 TMTSDRKKEEGMEYVKSAEKHLK--------TSL-LKWKPDYDSAADDYSKAA--------------TCFKGAKSFQQCK   80 (325)
Q Consensus        24 ~~~~~~~~~eA~~l~~~A~~~~~--------~~~-~~~~~~~~~A~~~y~~a~--------------~~y~~~g~~~~A~   80 (325)
                      |+-++.++.+|.++-..|...-+        ++- -.-.+|++.|++.|..+.              ..+..+|+.++|+
T Consensus       465 flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeal  544 (840)
T KOG2003|consen  465 FLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEAL  544 (840)
T ss_pred             HHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHH
Confidence            55556678888888888765432        111 111588888888888763              4567889999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL  159 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~  159 (325)
                      ++|.+.-.+...      -+.++.+++++|..+.++.+|++++-++..+..  .|+    ..+.++|.+|.+.+ -.+|.
T Consensus       545 d~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~slip--~dp----~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  545 DCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLIP--NDP----AILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             HHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCH----HHHHHHHHHhhcccchhhhh
Confidence            999887777654      367899999999999999999999999876533  233    36899999999987 89999


Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061        160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  239 (325)
Q Consensus       160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~  239 (325)
                      +|+-.....|.-.      .++..++|..|+...-+++|+.+|+++.-+-+     ... .-.+-++.|+...|+|.+|.
T Consensus       613 q~~ydsyryfp~n------ie~iewl~ayyidtqf~ekai~y~ekaaliqp-----~~~-kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  613 QCHYDSYRYFPCN------IETIEWLAAYYIDTQFSEKAINYFEKAALIQP-----NQS-KWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             hhhhhcccccCcc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-----cHH-HHHHHHHHHHHhcccHHHHH
Confidence            9998777766543      56888999999999999999999999865422     111 12245889999999999999


Q ss_pred             HHHHhh-cccCCChHH-HHHHHHHHHHhcCCHHHHHHHhcC-hhhhcc
Q psy10061        240 KAFKEW-GNCCEAPEV-QTLEKLLQAFDEEDPEGARQALND-PFIKHM  284 (325)
Q Consensus       240 ~~~~~~-~~~~~~~e~-~~l~~L~~a~~~gd~~~~~~~~~~-~~~~~l  284 (325)
                      +.|++. ..|...-+| ++|.+|+.-+...|..+..+-+++ ..++.+
T Consensus       681 d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~ei  728 (840)
T KOG2003|consen  681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIKEI  728 (840)
T ss_pred             HHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence            999998 777655555 566555554445555555555554 334433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.42  E-value=7.4e-11  Score=117.23  Aligned_cols=107  Identities=14%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061        158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA  237 (325)
Q Consensus       158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~  237 (325)
                      |+.+|++++.+....      ..++..+|.++..+|++++|+.++++++.+.+..      ..++..+|.++...|++++
T Consensus       269 A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        269 AAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             HHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHH
Confidence            455555555543321      2466666777777777777777777666543221      1234556777777777777


Q ss_pred             HHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        238 AEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       238 A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      |...|++. ......  ......++.++ ..|+.+++...+++
T Consensus       337 A~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        337 ASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             HHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777775 221111  12233344554 47777777777665

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.41  E-value=1.3e-10  Score=122.53  Aligned_cols=233  Identities=14%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             cccHHHHHHHHHHHHhhhccc------c---cCCCCCHHHHHHHH-----------------------HHHHHHHHhcCC
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTS------L---LKWKPDYDSAADDY-----------------------SKAATCFKGAKS   75 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~------~---~~~~~~~~~A~~~y-----------------------~~a~~~y~~~g~   75 (325)
                      .+++++|+++|+++.+.....      +   +. ..++++|...+                       ...+.++...|+
T Consensus       398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~  476 (1157)
T PRK11447        398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK  476 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence            468999999999988764321      0   11 23444444333                       234566777888


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------
Q psy10061         76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL--------------------------  129 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~--------------------------  129 (325)
                      +++|+.+|.+++.+...  +    ..++..++.+|...|++++|+..+++++..                          
T Consensus       477 ~~eA~~~~~~Al~~~P~--~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~  550 (1157)
T PRK11447        477 WAQAAELQRQRLALDPG--S----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA  550 (1157)
T ss_pred             HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            88998888888776543  1    235667777777778888877777776542                          


Q ss_pred             --------------------------------HHHcCCHHHHHH----------HHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061        130 --------------------------------FLEQGNREAAST----------VLEKGAKSLEELK-SDAALTLYSRAA  166 (325)
Q Consensus       130 --------------------------------~~~~g~~~~aa~----------~l~~lg~~~~~~~-~~~A~~~y~~Al  166 (325)
                                                      +...|++..+..          .+..+|.++...+ +++|+.+|++++
T Consensus       551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al  630 (1157)
T PRK11447        551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL  630 (1157)
T ss_pred             HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                            111222222222          2334666776666 888888888888


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-  245 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-  245 (325)
                      .+....      ..++..++.+|...|++++|+..|++++...+.      ...++..+|.++...|++++|...|+++ 
T Consensus       631 ~~~P~~------~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al  698 (1157)
T PRK11447        631 TREPGN------ADARLGLIEVDIAQGDLAAARAQLAKLPATAND------SLNTQRRVALAWAALGDTAAAQRTFNRLI  698 (1157)
T ss_pred             HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            764432      356778888888888888888888876653211      1134566888888999999999999987 


Q ss_pred             cccC---C-ChHHHHHHHHHHHH-hcCCHHHHHHHhcCh
Q psy10061        246 GNCC---E-APEVQTLEKLLQAF-DEEDPEGARQALNDP  279 (325)
Q Consensus       246 ~~~~---~-~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~  279 (325)
                      ....   . .....++..+++.+ ..|+++.+...+++.
T Consensus       699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A  737 (1157)
T PRK11447        699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA  737 (1157)
T ss_pred             hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2221   1 12345566777777 589999888887763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.40  E-value=5e-10  Score=115.73  Aligned_cols=245  Identities=15%  Similarity=0.043  Sum_probs=190.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|..++.+|......      .+...........+.++...|++++|...+.++....+..++....+.++.++
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPL------TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            356899999999999875432      23333444566788889999999999999999999999999988888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      +.++...|++++|..++++++.+....+..  ...+..+..+|.++...+ +++|..++++++.+....+.. ....++.
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~  616 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLA  616 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHH
Confidence            999999999999999999999998887642  222344566788777777 999999999999998765532 3445777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH---------------------------------------HHHHHHHH
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLL---------------------------------------AIGRLAVA  224 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------~~~~~~~~  224 (325)
                      .+|.++...|++++|...+.+++.+....+...                                       .....+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            899999999999999999999987654322100                                       00011356


Q ss_pred             HHHHHHhcCCHHHHHHHHHhh-c---cc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        225 LVLVQLARGDTVAAEKAFKEW-G---NC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       225 lg~~~~~~gd~~~A~~~~~~~-~---~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ++.++...|++.+|...++++ .   .. ......+++..++.++ ..|+.+++..++.+
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~  756 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE  756 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888899999999999999996 2   22 2334566777788887 69999999888876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.40  E-value=5.5e-11  Score=101.59  Aligned_cols=186  Identities=15%  Similarity=0.075  Sum_probs=147.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|++.+.++.+...        +   ....+...+.++...|++++|...|.+++......      ...+.++
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p--------~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~  105 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDP--------D---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNY  105 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCc--------c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Confidence            35689999999999876532        1   13567778999999999999999999998875432      2478889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      +.+|...|++++|+.++++++....    .......+..+|.++...+ +++|..++.+++......      ...+..+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l  175 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLEL  175 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHH
Confidence            9999999999999999999986421    2233456788899998887 999999999999875432      3467789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.++...|++++|+.++++++.+.+  ..    ...+..++.++...|+.+.|..+.+..
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYN--QT----AESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999988621  11    233456788999999999999887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.40  E-value=7e-11  Score=120.52  Aligned_cols=251  Identities=15%  Similarity=0.117  Sum_probs=135.5

Q ss_pred             hhhhhhHHHHHHhhchh----ccc------cccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSL----STM------TSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~----~~~------~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a   66 (325)
                      ++.++.+++.++-+...    .|+      ...+++++|++.|.++.+......         ....+++++|...|.++
T Consensus       582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (899)
T TIGR02917       582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA  661 (899)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666666666544322    132      233577777777777765443210         11146667776666654


Q ss_pred             --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Q psy10061         67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL---  129 (325)
Q Consensus        67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~---  129 (325)
                                    +.++...|++++|...+.........      ....+..+|.+|...|++++|+..|++++..   
T Consensus       662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  735 (899)
T TIGR02917       662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK------AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS  735 (899)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence                          34556667777777666655433211      1234555666666666666666666665543   


Q ss_pred             ----------HHHcCCHHHHH--------------HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        130 ----------FLEQGNREAAS--------------TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       130 ----------~~~~g~~~~aa--------------~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                                +...|++..+.              .++..+|.+|...+ +++|+.+|+++++.....      ..++..
T Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~  809 (899)
T TIGR02917       736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN------AVVLNN  809 (899)
T ss_pred             chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence                      12222222222              23444555555554 666666666666543321      235556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a  263 (325)
                      +|.++...|+ ++|+.++++++.+.+.  +    ..++..+|.++...|++++|.++|+++ .....  ...+...++.+
T Consensus       810 l~~~~~~~~~-~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~  880 (899)
T TIGR02917       810 LAWLYLELKD-PRALEYAEKALKLAPN--I----PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALA  880 (899)
T ss_pred             HHHHHHhcCc-HHHHHHHHHHHhhCCC--C----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Confidence            6666666666 6666666666654221  1    123445666677777777777777776 22211  23445556666


Q ss_pred             H-hcCCHHHHHHHhc
Q psy10061        264 F-DEEDPEGARQALN  277 (325)
Q Consensus       264 ~-~~gd~~~~~~~~~  277 (325)
                      + ..|+.+.+...++
T Consensus       881 ~~~~g~~~~A~~~~~  895 (899)
T TIGR02917       881 LLATGRKAEARKELD  895 (899)
T ss_pred             HHHcCCHHHHHHHHH
Confidence            5 4677666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.39  E-value=8.2e-11  Score=124.10  Aligned_cols=225  Identities=16%  Similarity=0.096  Sum_probs=154.3

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH--------HH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH--------AA  100 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------aa  100 (325)
                      +++++|+.+|+++.+..        ++.   .+.+..+|.+|...|++++|+.+|.+++++.........        ..
T Consensus       283 g~~~~A~~~l~~aL~~~--------P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~  351 (1157)
T PRK11447        283 GQGGKAIPELQQAVRAN--------PKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY  351 (1157)
T ss_pred             CCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence            56677777777666543        211   245566788999999999999999999987664432110        11


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh-h-
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-Q-  177 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~-~-  177 (325)
                      ......+.++...|++++|+.+|++++.+..  .+    ..++..+|.++...+ +++|+.+|++++.+........ . 
T Consensus       352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L  425 (1157)
T PRK11447        352 WLLIQQGDAALKANNLAQAERLYQQARQVDN--TD----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL  425 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            2334568888999999999999999988732  12    246778899988887 9999999999987654421100 0 


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061        178 ----------------------------------AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV  223 (325)
Q Consensus       178 ----------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  223 (325)
                                                        ....+..+|.++...|++++|+.+|++++.+.+..      ..+++
T Consensus       426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~------~~~~~  499 (1157)
T PRK11447        426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS------VWLTY  499 (1157)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence                                              01234456777888899999999999988764321      23567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        224 ALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       224 ~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .++.+|...|++++|...|+++ .......+.  ...++..+ ..++.+++...+++
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~--~~a~al~l~~~~~~~~Al~~l~~  554 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ--VYAYGLYLSGSDRDRAALAHLNT  554 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHh
Confidence            8999999999999999999997 333333332  33333333 47778877777654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.38  E-value=1.6e-10  Score=114.79  Aligned_cols=125  Identities=16%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      .++..+|.++...+ +++|+.++++++.+....      ..++..+|.++...|++++|+..|++++...+.     . .
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-----~-~  352 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-----T-S  352 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----c-h
Confidence            35667788888777 999999999998875432      246677899999999999999999888775321     1 1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAFD-EEDPEGARQALND  278 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~~~~~  278 (325)
                      ..+..+|.++...|++++|...|+++    +......-..+...+.+++. .+.+ .-+..|..
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~-~~~~~W~~  415 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP-PERLDWAW  415 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc-cchhhHHH
Confidence            23455688888999999999999986    33222223346667777775 4433 33334555

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.37  E-value=3.6e-11  Score=100.26  Aligned_cols=163  Identities=17%  Similarity=0.068  Sum_probs=132.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      +...++.+...+|.-|...|++..|...+++|+++-..      -..++.-++.+|+..+ .+.|-+.|++|+.+....|
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence            56788999999999999999999999999999876332      2336788999999998 9999999999999988876


Q ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC
Q psy10061        174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC  249 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~  249 (325)
                            ++++|.|..++.+|+|++|..+|++|+..    ..+...+..+.|+|.|-+.+|++++|.++|++.    +.+.
T Consensus       104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         104 ------DVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             ------chhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence                  48999999999999999999999999873    334456678899999999999999999999997    4443


Q ss_pred             CChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061        250 EAPEVQTLEKLLQA-FDEEDPEGARQALND  278 (325)
Q Consensus       250 ~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~  278 (325)
                      .     .+..+.+. ++.||-..++..+.+
T Consensus       174 ~-----~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         174 P-----ALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             h-----HHHHHHHHHHhcccchHHHHHHHH
Confidence            2     23344444 356766666665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.33  E-value=2.2e-10  Score=99.54  Aligned_cols=183  Identities=12%  Similarity=0.035  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      +..+...+.+...|..+...|++++|...|.+++..+...   .....++..+|.+|...|++++|+..|+++++.+...
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            3556777788888999999999999999999987766432   2345678899999999999999999999999876644


Q ss_pred             CCHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHHHHHHhcCCChhhHH-----------HHHHHHHHHHHHcC
Q psy10061        134 GNREAASTVLEKGAKSLEEL--------K-SDAALTLYSRAADVAHGEDNYKQAA-----------EYISRAARMCVRVK  193 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~--------~-~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~lg~~~~~~g  193 (325)
                      ...   ..++..+|.++...        + +++|++.|++++..++.......+.           .....+|.+|...|
T Consensus       104 ~~~---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       104 PDA---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             Cch---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            432   34577778877653        4 8999999999998877653321111           12246788999999


Q ss_pred             CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        194 EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       194 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++.+|+..|++++..++...   ....++..+|.++...|++.+|..+++..
T Consensus       181 ~~~~A~~~~~~al~~~p~~~---~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTP---ATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999988754421   23457789999999999999999998876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.31  E-value=8.1e-10  Score=112.76  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +..++.+|...|++++|+.++++++.....      -...+..+|.++...+ +++|+.+|+++++.....      ..+
T Consensus       570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~  637 (899)
T TIGR02917       570 ALALAQYYLGKGQLKKALAILNEAADAAPD------SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS------ALA  637 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHH
Confidence            344455555555555555555554322100      0123445555665555 677777777666543221      234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------c--------------HHHHHHHHHHHHHHHHhcC
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESE--------------H--------------LLAIGRLAVALVLVQLARG  233 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~--------------~~~~~~~~~~lg~~~~~~g  233 (325)
                      +..+|.++...|++++|+.+|++++.+.+...              +              .......+..+|.++...|
T Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  717 (899)
T TIGR02917       638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK  717 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence            55666666666666666666666655422100              0              0001223445666667777


Q ss_pred             CHHHHHHHHHhh
Q psy10061        234 DTVAAEKAFKEW  245 (325)
Q Consensus       234 d~~~A~~~~~~~  245 (325)
                      ++++|...|+++
T Consensus       718 ~~~~A~~~~~~~  729 (899)
T TIGR02917       718 DYPAAIQAYRKA  729 (899)
T ss_pred             CHHHHHHHHHHH
Confidence            777777777665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.30  E-value=4e-10  Score=115.40  Aligned_cols=223  Identities=9%  Similarity=-0.030  Sum_probs=151.7

Q ss_pred             ccHHHHHHHHHHHHhhhccc-----c---cCCCCCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTS-----L---LKWKPDYDSAADDYSKA-------------ATCFKGAKSFQQCKEYLLKAA   87 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~-----~---~~~~~~~~~A~~~y~~a-------------~~~y~~~g~~~~A~~~~~~a~   87 (325)
                      +++.+|+..+.++.......     +   ..-.+++++|...|.++             |.++...|++++|..+|.+++
T Consensus       490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL  569 (987)
T PRK09782        490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE  569 (987)
T ss_pred             CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46666777666665443221     0   00135556665555543             345667788888888888877


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061         88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAA  166 (325)
Q Consensus        88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al  166 (325)
                      .....  .    ...+..++.....+|++++|+.+|++++.+..   +    ...+.++|.++...+ +++|+.+|++++
T Consensus       570 ~l~P~--~----~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P---~----~~a~~~LA~~l~~lG~~deA~~~l~~AL  636 (987)
T PRK09782        570 QRGLG--D----NALYWWLHAQRYIPGQPELALNDLTRSLNIAP---S----ANAYVARATIYRQRHNVPAAVSDLRAAL  636 (987)
T ss_pred             hcCCc--c----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            54311  1    12333445555566999999999999886633   1    356889999999888 999999999999


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-  245 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-  245 (325)
                      .+.+..      ..++.++|.++...|++++|+.+|++++.+.+.      ...++.++|.++...|+++.|+.+|+++ 
T Consensus       637 ~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~------~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        637 ELEPNN------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD------DPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            886543      358889999999999999999999999887432      1246789999999999999999999997 


Q ss_pred             cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        246 GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       246 ~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..-.  +.+.+....+... ...+.+.+.+..++
T Consensus       705 ~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        705 DDID--NQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             hcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            2211  1133444455554 35556666665554

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=6.1e-10  Score=108.78  Aligned_cols=183  Identities=16%  Similarity=0.059  Sum_probs=134.3

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHhcCChHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKG---------AKSFQQCKEYLLKAANCYETNKSAYHA   99 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~a   99 (325)
                      +.+++|+.+|++|.+.-        +++.   ..|..++.+|..         .+++++|..++.+++++....      
T Consensus       275 ~~~~~A~~~~~~Al~ld--------P~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~------  337 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS--------PNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN------  337 (553)
T ss_pred             HHHHHHHHHHHHHHhcC--------CccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC------
Confidence            45778888888876544        3332   234455555442         345789999999988775432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +.++..+|.++...|++++|+.+|++|+++.-.      -+.++..+|.++...+ +++|+.++++++++.....     
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            356788899999999999999999999877321      1336788899999887 9999999999998865531     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                       .+...++.++...|++++|+..+++++....    + .....+..+|.++...|++++|...+++.
T Consensus       407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~----p-~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        407 -AAGITKLWITYYHTGIDDAIRLGDELRSQHL----Q-DNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             -hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc----c-cCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence             1233455567778999999999999876421    1 11235677999999999999999999986

>KOG1155|consensus

Probab=99.28  E-value=6.2e-10  Score=101.22  Aligned_cols=204  Identities=16%  Similarity=0.078  Sum_probs=157.0

Q ss_pred             cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      |++..+..++|..+|+.|+++.++        +..   +..-.|.-|...++.+.|+++|++|+++...  |    -+++
T Consensus       339 YYSlr~eHEKAv~YFkRALkLNp~--------~~~---aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--D----yRAW  401 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALKLNPK--------YLS---AWTLMGHEYVEMKNTHAAIESYRRAVDINPR--D----YRAW  401 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcc--------hhH---HHHHhhHHHHHhcccHHHHHHHHHHHhcCch--h----HHHH
Confidence            345556789999999999988754        232   3446788899999999999999999998764  2    2478


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      ..+|..|.-++.+-=|+-+|++|..+  +-.|.    +.+.-+|.+|+..+ .++|++||.+|+..-...      ..++
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDs----Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l  469 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALEL--KPNDS----RLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSAL  469 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhc--CCCch----HHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHH
Confidence            88999999999999999999999865  22332    36889999999988 999999999998765432      3588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccC-CChHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESE---HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC-EAPEVQTLE  258 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~-~~~e~~~l~  258 (325)
                      ..||.+|-+++++.+|..+|++-++.....|   +....+.+  -++.-+...+|+++|..+..+...+. .-+|++.|.
T Consensus       470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~--fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll  547 (559)
T KOG1155|consen  470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL--FLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL  547 (559)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH--HHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence            9999999999999999999999998664333   22333333  37788888999999999888874443 334555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.26  E-value=3.9e-09  Score=109.14  Aligned_cols=212  Identities=14%  Similarity=0.061  Sum_probs=169.4

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA--YHAAKHLEQ  105 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~--~~aa~~~~~  105 (325)
                      .|++++|..++.++......     .++.......+..++.++...|++++|..++.++..+....+..  ...+..+..
T Consensus       504 ~G~~~~A~~~~~~al~~~~~-----~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQ-----HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhh-----hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            47899999999999988765     24444555577888999999999999999999999998876532  223445667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh--------
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK--------  176 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~--------  176 (325)
                      ++.++...|++++|..++++++.+....+.. ..+..+..+|.++...+ +++|...+.++..+....+...        
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~  657 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK  657 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence            8899999999999999999999998876643 34567778888888777 9999999999887755432110        


Q ss_pred             -------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        177 -------------------------------QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       177 -------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                                                     .....+..++.++...|++++|..++++++...+..+.......++..+
T Consensus       658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l  737 (903)
T PRK04841        658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL  737 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence                                           0011135688899999999999999999999988887766677788899


Q ss_pred             HHHHHhcCCHHHHHHHHHhh
Q psy10061        226 VLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       226 g~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.++...|++.+|...+.++
T Consensus       738 a~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        738 NQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999997

>KOG1155|consensus

Probab=99.23  E-value=6.3e-10  Score=101.16  Aligned_cols=188  Identities=11%  Similarity=0.070  Sum_probs=151.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      |+-|...++.++|+.+|.+|+.+..+.      ..++.-+|-=|.++.+...|++.|+.|+++....  +    +++.-+
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--y----RAWYGL  404 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--Y----RAWYGL  404 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--H----HHHhhh
Confidence            566778888999999999999887654      4578889999999999999999999999986543  2    268899


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                      |+.|.-++ +.=|+-+|++|..+-+.+      ...+..+|.+|.++++.++|+++|.+++..-    +.  .+.++..+
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~----dt--e~~~l~~L  472 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAILLG----DT--EGSALVRL  472 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----cc--chHHHHHH
Confidence            99999999 888999999999875532      2478889999999999999999999998752    22  34578899


Q ss_pred             HHHHHhcCCHHHHHHHHHhh-c-c-c---CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        226 VLVQLARGDTVAAEKAFKEW-G-N-C---CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       226 g~~~~~~gd~~~A~~~~~~~-~-~-~---~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      |.+|-..+|..+|..+|+++ . . .   ....-.++..-|.+-. ..+|.+.+......
T Consensus       473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            99999999999999999997 2 1 1   1111223444466665 58899999987766

>KOG1941|consensus

Probab=99.21  E-value=2.7e-09  Score=94.45  Aligned_cols=208  Identities=13%  Similarity=0.061  Sum_probs=158.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061         55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG  134 (325)
Q Consensus        55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g  134 (325)
                      |-.--.+.|-+++..+...-++.+++.+-.-.+.+= .......-......+++.+..++.|+++++++++|+.+....+
T Consensus        78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp-gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~  156 (518)
T KOG1941|consen   78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP-GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND  156 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC-CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence            334444556666666666666666555433322211 1111112234556688999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC--Ch--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED--NY--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~--~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      |..-..+++..+|.+|.... +++|+-+..+|+++....+  +.  -....++..++..+..+|+...|.++++++..+.
T Consensus       157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            99999999999999999886 9999999999999988765  22  2224567789999999999999999999999999


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----cccCCChHHHHHHHHHHH
Q psy10061        210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----GNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~~~~~~~e~~~l~~L~~a  263 (325)
                      -+.|++...+..+..++.||...||.+.|..-|+++     ...+...+..++......
T Consensus       237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc  295 (518)
T KOG1941|consen  237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC  295 (518)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            999998888899999999999999999999999996     222344455555555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.1e-08  Score=89.43  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      .+-.++..+..+|....+|.+|++.-++...+-.+ ......|..|-.++.-+...+ .+.|+..+.+|++.-+..    
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----  213 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC----  213 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----
Confidence            33444555555555555555555544443322111 112344455555555555443 666777777766543322    


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ  255 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~  255 (325)
                        ..+-..+|.++...|+|++|++.++.+++-     ++.-.+.+...+-.||...|+..+....+.++ ..+.+.+---
T Consensus       214 --vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l  286 (389)
T COG2956         214 --VRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL  286 (389)
T ss_pred             --eehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence              112234677777777777777777666552     23334445566667777777777777777776 4444433333


Q ss_pred             HHHHHHH
Q psy10061        256 TLEKLLQ  262 (325)
Q Consensus       256 ~l~~L~~  262 (325)
                      ++.+++.
T Consensus       287 ~l~~lie  293 (389)
T COG2956         287 MLADLIE  293 (389)
T ss_pred             HHHHHHH
Confidence            4444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.20  E-value=4.4e-09  Score=107.89  Aligned_cols=153  Identities=11%  Similarity=0.021  Sum_probs=107.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      .+|.++...|++++|+.++++++...   .+.   ...+..++......+ +++|+.+|++++++.+.       ...+.
T Consensus       547 ~la~all~~Gd~~eA~~~l~qAL~l~---P~~---~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~  613 (987)
T PRK09782        547 AAANTAQAAGNGAARDRWLQQAEQRG---LGD---NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYV  613 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC---Ccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHH
Confidence            34444444555555555555544321   000   111222333333335 99999999999987652       35788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHH
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQ  262 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~  262 (325)
                      ++|.++.++|++++|+..|++++.+.+..      ..++.++|.++...|++++|+..|+++ ......  ..+...|+.
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~  685 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAY  685 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence            99999999999999999999999874331      246789999999999999999999998 333322  457788999


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      ++ ..||.+.+..++++
T Consensus       686 al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        686 VNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            87 59999999988876

>KOG2002|consensus

Probab=99.20  E-value=3.8e-09  Score=103.59  Aligned_cols=238  Identities=17%  Similarity=0.159  Sum_probs=160.6

Q ss_pred             ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      |+..++|..+..+..-|.+....        -..-++.|.+.|.+|..+|+|++|..+|.++..+....     -.-.+.
T Consensus       280 fyfK~dy~~v~~la~~ai~~t~~--------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~  346 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIKNTEN--------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLV  346 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----cccccc
Confidence            44444666666666655544321        12234556677888889999999999999887665432     223466


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHcC----CHHH--------------HHHHHHHHHHHHhc
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLF--------------LEQG----NREA--------------ASTVLEKGAKSLEE  152 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~--------------~~~g----~~~~--------------aa~~l~~lg~~~~~  152 (325)
                      .+|.+|...|++..++-++++.+..+              ...+    ..+.              -.+++..++.+|+.
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            77888888888888888887765432              1111    0011              12356677888888


Q ss_pred             cCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHH
Q psy10061        153 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL----AIGRLAVALVLV  228 (325)
Q Consensus       153 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~  228 (325)
                      .+.-.++..|.+|++++...+.. --.+.++++|..++..|++.+|..+|.+|+..+.+..+..    ..-...++++.|
T Consensus       427 ~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  427 TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence            88555699999999999888765 4468999999999999999999999999999865332111    112346789999


Q ss_pred             HHhcCCHHHHHHHHHhh-cccCCChHHHHHHHH-HHHHhcCCHHHHHHHhcC
Q psy10061        229 QLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKL-LQAFDEEDPEGARQALND  278 (325)
Q Consensus       229 ~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L-~~a~~~gd~~~~~~~~~~  278 (325)
                      .-..+++..|.+.|... ..+.+.-.+.+  +| +-+...+....+...++.
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~yl--Rl~~ma~~k~~~~ea~~~lk~  555 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKEHPGYIDAYL--RLGCMARDKNNLYEASLLLKD  555 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHCchhHHHHH--HhhHHHHhccCcHHHHHHHHH
Confidence            99999999999999997 33333333332  23 334445555555555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.20  E-value=7.7e-09  Score=93.10  Aligned_cols=152  Identities=6%  Similarity=-0.104  Sum_probs=111.3

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      ...+.++..+.+.+.....       +.+.-+..|...|.+|...|++++|...|.+++.+....      ..++.++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~  106 (296)
T PRK11189         40 LQQEVILARLNQILASRDL-------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGI  106 (296)
T ss_pred             hHHHHHHHHHHHHHccccC-------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHH
Confidence            3567777777776654322       224546778888999999999999999999998875432      568899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  187 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~  187 (325)
                      +|...|++++|+..|++++++....      ..++.++|.++...+ +++|++.+++++.+.....  .  ...+   ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~--~~~~---~~  173 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--Y--RALW---LY  173 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H--HHHH---HH
Confidence            9999999999999999998763221      236788999888777 9999999999998765432  1  0111   12


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q psy10061        188 MCVRVKEFDKAADLIRQEI  206 (325)
Q Consensus       188 ~~~~~g~~~~A~~~~~~al  206 (325)
                      +....+++++|+..|.+++
T Consensus       174 l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        174 LAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHccCCHHHHHHHHHHHH
Confidence            3344567888888886654

>KOG1129|consensus

Probab=99.15  E-value=3.5e-09  Score=92.64  Aligned_cols=198  Identities=14%  Similarity=0.134  Sum_probs=145.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------H
Q psy10061         64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT--------------L  129 (325)
Q Consensus        64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~--------------~  129 (325)
                      +++|.||..+|-+.+|...+..++.-+...       +.|.-++.+|.+..++..|+..+.+.++              |
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI  299 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence            367888888888888888887776655432       3566666777777777777666665443              4


Q ss_pred             HHHcCCHHHHHHHHHHHHHH--------------HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061        130 FLEQGNREAASTVLEKGAKS--------------LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  194 (325)
Q Consensus       130 ~~~~g~~~~aa~~l~~lg~~--------------~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  194 (325)
                      ++.+++.+.+++.|......              |.-.+ ++-|+.+|++.+.+-...      .+.+.+||.+..-.++
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s------peLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS------PELFCNIGLCCLYAQQ  373 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC------hHHHhhHHHHHHhhcc
Confidence            55556666666655554333              22223 888999998888765443      3688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-HhcCCHHHHH
Q psy10061        195 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDEEDPEGAR  273 (325)
Q Consensus       195 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~gd~~~~~  273 (325)
                      ++-++..|++++....+   +...+..|+|+|.+....||+.-|..+|+-+-. .+...+..+.+|+-. +..||.+.++
T Consensus       374 ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-~d~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  374 IDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-SDAQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             hhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhc-cCcchHHHHHhHHHHHhhcCchHHHH
Confidence            99999999999987643   344667899999999999999999999998711 223345678888764 5799999999


Q ss_pred             HHhcC
Q psy10061        274 QALND  278 (325)
Q Consensus       274 ~~~~~  278 (325)
                      ..++.
T Consensus       450 sll~~  454 (478)
T KOG1129|consen  450 SLLNA  454 (478)
T ss_pred             HHHHH
Confidence            99876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.2e-07  Score=83.07  Aligned_cols=240  Identities=13%  Similarity=0.120  Sum_probs=186.8

Q ss_pred             HHHHHhhchhcccc-----ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061         13 YVKSAEKHSLSTMT-----SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAA   87 (325)
Q Consensus        13 ~~~~ae~~~~~~~~-----~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~   87 (325)
                      .-++|.+...+|+.     .+++.++|.++|.+-.+.-           .+-.+..--+|++|+..|..+.|+..++...
T Consensus        28 ~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~   96 (389)
T COG2956          28 KQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLL   96 (389)
T ss_pred             HHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            44677777776643     3568899999999876633           2334566689999999999999999988754


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061         88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAA  166 (325)
Q Consensus        88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al  166 (325)
                      +--.-  -...-..+...+|.=|...|-+|.|...|....+.      .+-+-.++..+-.+|+... .++|++.-++-.
T Consensus        97 ~spdl--T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~  168 (389)
T COG2956          97 ESPDL--TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLV  168 (389)
T ss_pred             cCCCC--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            32211  12445678899999999999999999999887643      4455668899999999887 999999999888


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  246 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~  246 (325)
                      .+-.+. .....+..+..++..+....+.+.|+..+.+++...+..    .  ++-..+|.+++..|+|++|.+.++...
T Consensus       169 k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----v--RAsi~lG~v~~~~g~y~~AV~~~e~v~  241 (389)
T COG2956         169 KLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC----V--RASIILGRVELAKGDYQKAVEALERVL  241 (389)
T ss_pred             HcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----e--ehhhhhhHHHHhccchHHHHHHHHHHH
Confidence            876654 445567889999999999999999999999998863321    1  233468999999999999999999972


Q ss_pred             ccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        247 NCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       247 ~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .-+..--..++..|..+| ..|+++.+...+++
T Consensus       242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            222222356888999998 59999999998887

>KOG1126|consensus

Probab=99.13  E-value=3.5e-10  Score=106.80  Aligned_cols=126  Identities=16%  Similarity=0.055  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ++..+|.+|.++++++.|.-++++|++|--..      ...+.-+|.++...+ .|+|+.+|++|+.+-...      .-
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l  558 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PL  558 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------ch
Confidence            44445555555555555555555554442111      112333444444444 455555555554433221      12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +....|.++..+++|++|+..+++.-++.++      .+..+..+|.+|-..|+...|+..|-=+
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~------es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELVPQ------ESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            3334444455555555555544444333221      1123334455555555555554444443

>KOG1173|consensus

Probab=99.12  E-value=1.5e-09  Score=100.85  Aligned_cols=191  Identities=16%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      .+.+++.+|..+|-||-.+-.+        |..   .+--.|..|...+.-++|+.+|..|.+++.....|      +.=
T Consensus       323 l~i~k~seARry~SKat~lD~~--------fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LY  385 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPT--------FGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLY  385 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCcc--------ccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHH
Confidence            3447889999999988655433        222   23345777888888899999999999988766443      234


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh-hHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYIS  183 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~  183 (325)
                      +|.=|...+++.-|..++.+|..|....-      -+++.+|.+....+ |.+|+.+++.++...+...+.. .-.-++.
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            57777888899999999999988755332      26888999887665 9999999999997777665432 2334789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +||.++.++++|.+|+.+|+++|.+.++.      ..++..+|.||..+|+++.|.++|.++
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            99999999999999999999999875442      235678999999999999999999997

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.11  E-value=1.9e-09  Score=96.18  Aligned_cols=183  Identities=15%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL  150 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~  150 (325)
                      ...+++++|...+.++.+-.   ++    ...+..++.++...++++++...++++..    ......-..++..+|.++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~---~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~  156 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERD---GD----PRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIY  156 (280)
T ss_dssp             -------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHH
T ss_pred             cccccccccccccccccccc---cc----cchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHH
Confidence            46677778777776654322   22    24556677788899999999999888763    232334566889999999


Q ss_pred             hccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        151 EELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       151 ~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      ...| +++|+++|++|+++.+..      ..+...++.+++..|+++++...+.......+...      .++..+|.++
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~  224 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAY  224 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHh
Confidence            9998 999999999999988764      24677899999999999998888777665442222      2445689999


Q ss_pred             HhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        230 LARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       230 ~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +..|++++|+..|++. ...  .....++..+++++ ..|+.+.+....++
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------------
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            9999999999999997 322  23355677889998 59999988887665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=6e-09  Score=90.45  Aligned_cols=167  Identities=9%  Similarity=-0.027  Sum_probs=127.5

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+..+.++.+....        .....+.+...|.+|...|++++|...|.++++.+....   ....++..+
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~  113 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPF--------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLR  113 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCC--------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHH
Confidence            346899999999998776633        244556677889999999999999999999998776433   234467788


Q ss_pred             HHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061        107 IMMCKEL--------NDLTDVENLAKQAATLFLEQGNREAAS-----------TVLEKGAKSLEELK-SDAALTLYSRAA  166 (325)
Q Consensus       107 ~~~y~~~--------g~~~eA~~~~~~A~~~~~~~g~~~~aa-----------~~l~~lg~~~~~~~-~~~A~~~y~~Al  166 (325)
                      |.++...        |++++|+..+++++..+........+.           .....+|.+|...+ +.+|+..|++++
T Consensus       114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  193 (235)
T TIGR03302       114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV  193 (235)
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            8888765        789999999999987765554333221           11235677777777 999999999999


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      +.+...   .....++..+|.++..+|++++|+.+++....
T Consensus       194 ~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       194 ENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            887764   23357888999999999999999998776543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0548|consensus

Probab=99.10  E-value=2.1e-08  Score=92.94  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=157.8

Q ss_pred             HHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-C
Q psy10061         16 SAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN-K   94 (325)
Q Consensus        16 ~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~-~   94 (325)
                      ..||-+..=.....++..|++.|.++..+-            ..+..+...+.+|...|.+.+.+.....+.+..+.. .
T Consensus       225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~------------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra  292 (539)
T KOG0548|consen  225 HKEKELGNAAYKKKDFETAIQHYAKALELA------------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA  292 (539)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh------------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH
Confidence            344444332333346777777777775543            345666777778888888887777777766655543 2


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHH--------------HHHHHHHHHhccC
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE------QGNREAAST--------------VLEKGAKSLEELK  154 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~------~g~~~~aa~--------------~l~~lg~~~~~~~  154 (325)
                      +....+.++..+|..|.+.++++.++.+|++++.-++.      ....+++..              ....-|.-+...+
T Consensus       293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG  372 (539)
T ss_pred             HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence            44558888889999999999999999999999876554      111122111              1222244444444


Q ss_pred             -HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061        155 -SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG  233 (325)
Q Consensus       155 -~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  233 (325)
                       |..|+.+|.+|+..-+..      ...|.+.+.+|.++|++..|+.-.+.++++.     +.. ...|++-|.|+..+.
T Consensus       373 dy~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-----p~~-~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGEYPEALKDAKKCIELD-----PNF-IKAYLRKGAALRAMK  440 (539)
T ss_pred             CHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----chH-HHHHHHHHHHHHHHH
Confidence             999999999988654322      4689999999999999999999999998872     222 246677899999999


Q ss_pred             CHHHHHHHHHhhcccCCChHHHHHHHHHHHHh
Q psy10061        234 DTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFD  265 (325)
Q Consensus       234 d~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~  265 (325)
                      +|++|.+.|++....+ +....++..+.+++.
T Consensus       441 ~ydkAleay~eale~d-p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  441 EYDKALEAYQEALELD-PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence            9999999999984333 334556777777764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.09  E-value=2.2e-09  Score=76.48  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAY-HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~-~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                      ..+.+|..+|.+|...|+|++|+++|.+++++.+..|+.. ..+.++.++|.+|..+|++++|+.++++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4455666666666666666666666666666655555443 3466666666666666666666666666666654

...

>PRK12370 invasion protein regulator; Provisional

Probab=99.08  E-value=1.2e-08  Score=99.79  Aligned_cols=182  Identities=9%  Similarity=-0.103  Sum_probs=131.0

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++|+..+++|.++-        ++..   ..+..+|.++...|++++|..+|.+++++....      +.++..+|.
T Consensus       318 ~~~~~A~~~~~~Al~ld--------P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~  380 (553)
T PRK12370        318 NAMIKAKEHAIKATELD--------HNNP---QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGW  380 (553)
T ss_pred             hHHHHHHHHHHHHHhcC--------CCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence            46788888888887654        3333   346677899999999999999999998876432      347888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM  188 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~  188 (325)
                      ++...|++++|+.++++++.+.-..   ..  ..+..++..+...++++|+.++++++......     ....+..+|.+
T Consensus       381 ~l~~~G~~~eAi~~~~~Al~l~P~~---~~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~  450 (553)
T PRK12370        381 NLFMAGQLEEALQTINECLKLDPTR---AA--AGITKLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSMQVMF  450 (553)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC---hh--hHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHH
Confidence            9999999999999999998773321   11  12223333444444999999999987653211     13467789999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |..+|++++|...+.+.+....      ........++.+|...|+  .|...++..
T Consensus       451 l~~~G~~~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~l  499 (553)
T PRK12370        451 LSLKGKHELARKLTKEISTQEI------TGLIAVNLLYAEYCQNSE--RALPTIREF  499 (553)
T ss_pred             HHhCCCHHHHHHHHHHhhhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence            9999999999999987544211      111244567788888885  677766664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.08  E-value=2.7e-09  Score=75.94  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAH  170 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~  170 (325)
                      ...+.++.++|.+|..+|++++|+.+|++++++....|+.. ..+.++.++|.++...+ +++|++++++|+++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            34567778888888888888888888888888876777644 45777777777777776 7777777777777664

...

>KOG1126|consensus

Probab=99.04  E-value=1.3e-09  Score=103.14  Aligned_cols=221  Identities=10%  Similarity=0.075  Sum_probs=161.4

Q ss_pred             ccHHHHHHHHHHHHhhhcc---c-------ccCCCCCHH-------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKT---S-------LLKWKPDYD-------------SAADDYSKAATCFKGAKSFQQCKEYLLK   85 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~---~-------~~~~~~~~~-------------~A~~~y~~a~~~y~~~g~~~~A~~~~~~   85 (325)
                      .+|++|...|..+-+.-.-   +       +++.++++.             ..-+.+--+|+||..+++++.|+.+|.+
T Consensus       367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~R  446 (638)
T KOG1126|consen  367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKR  446 (638)
T ss_pred             HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHH
Confidence            4788899888887655432   1       111122222             1123444578999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q psy10061         86 AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSR  164 (325)
Q Consensus        86 a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~  164 (325)
                      |+.+-...      +.+|.-+|-=+.....+|.|..+|++|+.+-.+.      =+++.-+|.+|.+.+ ++.|.-+|++
T Consensus       447 AiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  447 AIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             hhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccchhhHHHHHHHh
Confidence            98765433      4577888877777888999999999998653322      236889999999887 9999999999


Q ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      |+++-...      ..++..+|.++.++|+.++|+.+|++|+.+-+..    ..  .-+..+.+++..+++++|+..+++
T Consensus       515 A~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn----~l--~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  515 AVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN----PL--CKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC----ch--hHHHHHHHHHhhcchHHHHHHHHH
Confidence            99886654      2466789999999999999999999998863322    12  335688999999999999999999


Q ss_pred             hcccCCChHHHHHHHHHHHHh-cCCHHHHHH
Q psy10061        245 WGNCCEAPEVQTLEKLLQAFD-EEDPEGARQ  274 (325)
Q Consensus       245 ~~~~~~~~e~~~l~~L~~a~~-~gd~~~~~~  274 (325)
                      .... ..+|.-+...|+..|. .|..+.+.-
T Consensus       583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  583 LKEL-VPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHHccchHHHH
Confidence            7333 1345556667788874 555554443

>KOG2076|consensus

Probab=99.04  E-value=9.6e-08  Score=93.32  Aligned_cols=92  Identities=11%  Similarity=0.056  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE  258 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~  258 (325)
                      ..+..++..|...|+|.+|+.+|......     .....+-+|..+|.||...|.++.|.++|+++ ..-...  -.+..
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~--~D~Ri  487 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN--LDARI  487 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc--hhhhh
Confidence            56778888888999999999988765542     22233568899999999999999999999997 222211  22444


Q ss_pred             HHHHHH-hcCCHHHHHHHhcC
Q psy10061        259 KLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       259 ~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .|...+ ..|+++++.+.+.+
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhc
Confidence            566776 58999988887766

>KOG2002|consensus

Probab=99.00  E-value=1.8e-08  Score=99.02  Aligned_cols=234  Identities=14%  Similarity=0.075  Sum_probs=149.7

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDS----AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~----A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      -|.+.+|.++|.+|+......     .|.++    -+..-.+++.+.-..++++.|.+.|...+.-+.      +-..+|
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~-----~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp------~YId~y  533 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEV-----ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP------GYIDAY  533 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhh-----cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc------hhHHHH
Confidence            357888888888888774320     11111    133344556666666677777777766544332      334566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------C-------------CHH----------HHHHHHHHHHHHHhcc
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQ-------G-------------NRE----------AASTVLEKGAKSLEEL  153 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------g-------------~~~----------~aa~~l~~lg~~~~~~  153 (325)
                      .++|-+-+..+...+|..++..++++-...       |             ...          .=+-++..||++|...
T Consensus       534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~  613 (1018)
T KOG2002|consen  534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA  613 (1018)
T ss_pred             HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence            666644455556666666666655421000       0             000          0012345567766543


Q ss_pred             ------CHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        154 ------KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       154 ------~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                            +...+..++.+|+++|.+. ...+.-+.+-+.+|-|+...|++.+|+.+|.++.+-..+      -...|+|+|
T Consensus       614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNla  687 (1018)
T KOG2002|consen  614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLA  687 (1018)
T ss_pred             hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHH
Confidence                  2556667777777776532 222222456688999999999999999999988764321      224678999


Q ss_pred             HHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        227 LVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .||+.+|+|..|++.|+.+ ..|.......++.-|++++ +.|....+...+..
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~  741 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK  741 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999998 6676666678899999996 68887777766654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.97  E-value=7.3e-08  Score=97.78  Aligned_cols=201  Identities=10%  Similarity=-0.027  Sum_probs=124.8

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++|+..|+++.+.-..     .+++  +. .+  ++.+|...|++++|...|.+++.....  +..........++.
T Consensus       251 g~~~eA~~~~~~ll~~~~~-----~P~~--a~-~~--la~~yl~~g~~e~A~~~l~~~l~~~p~--~~~~~~~~~~~L~~  318 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQI-----IPPW--AQ-RW--VASAYLKLHQPEKAQSILTELFYHPET--IADLSDEELADLFY  318 (765)
T ss_pred             hhHHHHHHHHHHhhccCCC-----CCHH--HH-HH--HHHHHHhcCCcHHHHHHHHHHhhcCCC--CCCCChHHHHHHHH
Confidence            4566666666665443211     1222  11 11  366788888888888888876542211  10111234556666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH--------cCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLE--------QGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~--------~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ++.+.|++++|+.+++++......        ...+. .....+..++.++...+ +++|+..+++++...+..      
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------  392 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------  392 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            777888888888888877654211        11111 22345566777777666 888888888887765443      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE  253 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e  253 (325)
                      ..++..+|.++...|++++|+..+++++.+.+..     . .+++..+.+++..|++++|...+++. ..+.....
T Consensus       393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-----~-~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-----I-NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----h-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            2477788888888888888888888887764221     1 25566777888888888888888887 44444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.95  E-value=9.9e-08  Score=85.89  Aligned_cols=183  Identities=11%  Similarity=-0.060  Sum_probs=127.5

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .|++++|+..|.+|.+..        ++.   ...|...|.++...|++++|...|.+++++....      ..++.++|
T Consensus        77 ~g~~~~A~~~~~~Al~l~--------P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg  139 (296)
T PRK11189         77 LGLRALARNDFSQALALR--------PDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRG  139 (296)
T ss_pred             CCCHHHHHHHHHHHHHcC--------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            368889999998887754        332   4678899999999999999999999999876442      34789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .++...|++++|+..+++++.+...  +...  ..+.   .+.... ++++|+..+.+++.....  +      .+ ..+
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~--~~~~--~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~--~------~~-~~~  203 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPN--DPYR--ALWL---YLAESKLDPKQAKENLKQRYEKLDK--E------QW-GWN  203 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC--CHHH--HHHH---HHHHccCCHHHHHHHHHHHHhhCCc--c------cc-HHH
Confidence            9999999999999999999876332  2211  1111   122333 499999999887643211  1      11 134


Q ss_pred             HHHHHcCCHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        187 RMCVRVKEFDKA--ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       187 ~~~~~~g~~~~A--~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++..+|++.++  +..+.+.+....+...  ....+|+.+|.++...|++++|+.+|+++
T Consensus       204 ~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~--~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        204 IVEFYLGKISEETLMERLKAGATDNTELAE--RLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             HHHHHccCCCHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555566766544  3333333222223332  23457889999999999999999999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=2.6e-07  Score=93.74  Aligned_cols=243  Identities=13%  Similarity=0.004  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCH-HHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDY-DSAADD-YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM  109 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~-~~A~~~-y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~  109 (325)
                      ++|++.+++..+....     .++. ..-... +..++.+ ...|++++|+..|.+++.....  .+.. +.  ..++.+
T Consensus       213 d~Al~~~~~ll~~~~~-----~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~--~~la~~  281 (765)
T PRK10049        213 DRALAQYDALEALWHD-----NPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQI--IPPW-AQ--RWVASA  281 (765)
T ss_pred             HHHHHHHHHHHhhccc-----CCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCC--CCHH-HH--HHHHHH
Confidence            5677777776655432     1211 111111 2234555 4669999999999997655321  1222 22  225889


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--------CChh-hHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--------DNYK-QAA  179 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--------~~~~-~~~  179 (325)
                      |..+|++++|+.+|++++..-  -.+..........++.++...+ +++|+.+++++.......        ..+. ...
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~  359 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL  359 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence            999999999999999987431  1111111234566666676666 999999999998764321        1111 223


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE  258 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~  258 (325)
                      .++..++.++...|++++|+..+++++...+..      ..+++.++.++...|++.+|+..++++ ....+..+  +..
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~--l~~  431 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN--LEV  431 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--HHH
Confidence            567789999999999999999999998764322      247788999999999999999999998 43433333  333


Q ss_pred             HHHH-HHhcCCHHHHHHHhcChh-hhcccHHHHHHhhcC
Q psy10061        259 KLLQ-AFDEEDPEGARQALNDPF-IKHMDVEYSRLARDL  295 (325)
Q Consensus       259 ~L~~-a~~~gd~~~~~~~~~~~~-~~~l~~~~~~~~~~l  295 (325)
                      .++. +...|+.+.+...+++-+ ...-++.+.++.+.+
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4444 457999999999988722 333355566666655

>KOG0547|consensus

Probab=98.94  E-value=1.4e-07  Score=86.67  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061         63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV  142 (325)
Q Consensus        63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~  142 (325)
                      |.+.+.+|....+..+-...|.+|.++.....+      +|..-|.++.-++++++|+.-|++++.+--+      -+-.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~  430 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYA  430 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHH
Confidence            556667777777777777777777777655433      6666677777777777777777777655221      1223


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      +..++-.....+ ++++...++++..-|+..      .++++-.|.++..++++++|++.|..++++-+
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            334443333333 666666666665554432      34555566666666666666666666666543

>KOG1173|consensus

Probab=98.93  E-value=5.2e-08  Score=90.86  Aligned_cols=210  Identities=10%  Similarity=-0.023  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061         56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN  135 (325)
Q Consensus        56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~  135 (325)
                      |++-+-.+.-.|..|...|++++|..+|.++-.+-.+.|      .++...|..|.-.|..++|+.+|..|..++....-
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl  381 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL  381 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence            333333344556777788999999999999877666554      35667788888889999999999999998877665


Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                      +.      .-+|.=|...+ +..|-.+|.+|+.+++...      -+++.+|.+....+.|.+|..+|+.++....+...
T Consensus       382 P~------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  382 PS------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             hH------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence            53      34666666555 9999999999999988652      47889999999999999999999999977766543


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccH
Q psy10061        215 --LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDV  286 (325)
Q Consensus       215 --~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~  286 (325)
                        ..+. -.+.+||.++...+.+.+|+.+|+++ ..-...  ..+...++=.+ -.|..+.+.++..+++.-..+.
T Consensus       450 e~~~w~-p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  450 EKIFWE-PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             cccchh-HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence              2233 36789999999999999999999998 222222  34555666666 4899999999988855444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.93  E-value=4.3e-08  Score=87.49  Aligned_cols=218  Identities=16%  Similarity=0.087  Sum_probs=100.0

Q ss_pred             hhhhhhHHHHH-Hhhchh-----cccc------ccccHHHHHHHHHHHHhhhcccc--------cCCCCCHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKS-AEKHSL-----STMT------SDRKKEEGMEYVKSAEKHLKTSL--------LKWKPDYDSAADDYSK   65 (325)
Q Consensus         6 ~~~~~~~~~~~-ae~~~~-----~~~~------~~~~~~eA~~l~~~A~~~~~~~~--------~~~~~~~~~A~~~y~~   65 (325)
                      ++.+|.+.+++ +.+...     .|..      ..+++++|++.|.+..+.-+...        ....+++++|.+.+.+
T Consensus        23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~  102 (280)
T PF13429_consen   23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEK  102 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46777777744 344311     2321      12578888888888766544310        1124666666655443


Q ss_pred             -------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         66 -------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        66 -------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                                   ++.++...++++++...+.++..    ..........+...|.++.+.|++++|+.+|++|+++...
T Consensus       103 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  103 AYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             ---------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             ccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence                         35677888999999988888653    2222345678899999999999999999999999877543


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..      .+...++.++...+ ++++.+.+.......+...      ..+..+|.+|..+|++++|+.+|++++...+.
T Consensus       179 ~~------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  179 DP------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             -H------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             CH------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccccccccccccccc
Confidence            22      24667787888777 8887777766665554332      25567899999999999999999998764221


Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                        ++    ..+..++.++...|+.++|...++++
T Consensus       247 --d~----~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 --DP----LWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             ---H----HHHHHHHHHHT---------------
T ss_pred             --cc----cccccccccccccccccccccccccc
Confidence              22    35567999999999999999998875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.90  E-value=1e-07  Score=87.83  Aligned_cols=192  Identities=16%  Similarity=0.074  Sum_probs=129.4

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++.++..-+.++.+.....       .+ ..+....-+.++...|++++|...+.++++....  +.    .++.. +.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~-------~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~----~a~~~-~~   84 (355)
T cd05804          20 GERPAAAAKAAAAAQALAAR-------AT-ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DL----LALKL-HL   84 (355)
T ss_pred             CCcchHHHHHHHHHHHhccC-------CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cH----HHHHH-hH
Confidence            46677777777766655431       11 2222223466677889999999999888776432  21    12222 44


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  187 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~  187 (325)
                      .+...|++..+.....+++..  ...+.......+..+|.++...+ +++|+..+++++++.+..      ..++..+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~  156 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAH  156 (355)
T ss_pred             HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHH
Confidence            455555555444444454443  33444555566778888888887 999999999999876553      346778899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++...|++++|+.++++++...+.  .+......+..++.+++..|++++|...|++.
T Consensus       157 i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         157 VLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999998876543  12222345667899999999999999999986

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.89  E-value=7.4e-07  Score=92.40  Aligned_cols=247  Identities=12%  Similarity=0.095  Sum_probs=148.4

Q ss_pred             hhhhhhHHHHHHhhchh-----cc------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy10061          6 KKEEGMEYVKSAEKHSL-----ST------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK   74 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~-----~~------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g   74 (325)
                      ++.+|.+++.++.+..-     .|      +...+++++|.++|.+..+.   ++   .+|    ...|+.+...|...|
T Consensus       487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~---Gv---~PD----~vTYnsLI~a~~k~G  556 (1060)
T PLN03218        487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK---NV---KPD----RVVFNALISACGQSG  556 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc---CC---CCC----HHHHHHHHHHHHHCC
Confidence            45667777777765211     11      12235777777777765321   11   122    234555566666666


Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHcCCHHHH
Q psy10061         75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA---------------TLFLEQGNREAA  139 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~---------------~~~~~~g~~~~a  139 (325)
                      ++++|.+.|.++......+. +.  ...|..+...|.+.|++++|.+.|+...               ..|.+.|+.+.+
T Consensus       557 ~~deA~~lf~eM~~~~~gi~-PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA  633 (1060)
T PLN03218        557 AVDRAFDVLAEMKAETHPID-PD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA  633 (1060)
T ss_pred             CHHHHHHHHHHHHHhcCCCC-Cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence            66666666665543211110 00  2355555666666666666666555432               223344444444


Q ss_pred             HHH---------------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        140 STV---------------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       140 a~~---------------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      ...               |..+...|...+ +++|.+.+.+..+.    +.... ..+++.+...|.+.|++++|..+|+
T Consensus       634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~  708 (1060)
T PLN03218        634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKLG-TVSYSSLMGACSNAKNWKKALELYE  708 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            444               334444455555 78888877776532    22222 2478889999999999999999988


Q ss_pred             HHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        204 QEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       204 ~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +....    + .+.  ...|+.+...|...|++++|.+.|++.  ..+..  ...+...|+.++ ..|+.+.+...+..
T Consensus       709 eM~~~----g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~  779 (1060)
T PLN03218        709 DIKSI----KLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQ  779 (1060)
T ss_pred             HHHHc----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            76432    2 222  246788999999999999999999987  33322  234556667777 58999999998876

>KOG1129|consensus

Probab=98.86  E-value=7.9e-09  Score=90.45  Aligned_cols=196  Identities=17%  Similarity=0.136  Sum_probs=132.1

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM  109 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~  109 (325)
                      +.--.+.++++|.+.++.++.+     ..-.+.|--+..+|....+...|+..+.+.++.+.      +-...+..++.+
T Consensus       231 kCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi  299 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARI  299 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHH
Confidence            3333445555555555443321     11234566777777777777777777776665543      223345556666


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHH--------------HcCCHHHHHH--------------HHHHHHHHHhccC-HHHHHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFL--------------EQGNREAAST--------------VLEKGAKSLEELK-SDAALT  160 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~--------------~~g~~~~aa~--------------~l~~lg~~~~~~~-~~~A~~  160 (325)
                      |..++++++|+++|+.+++...              -.++++-+..              .+.|+|.+..--+ +|-++.
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence            6666666666666666654311              1133444443              3456666655444 999999


Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061        161 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK  240 (325)
Q Consensus       161 ~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~  240 (325)
                      ++++|+......   ..++++|.++|.+.+..|++.-|..+|+-+|.-      ....+.+++|++++-...|+..+|..
T Consensus       380 sf~RAlstat~~---~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  380 SFQRALSTATQP---GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             HHHHHHhhccCc---chhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHH
Confidence            999999887654   445789999999999999999999999877652      12344688999999999999999999


Q ss_pred             HHHhh
Q psy10061        241 AFKEW  245 (325)
Q Consensus       241 ~~~~~  245 (325)
                      +++.+
T Consensus       451 ll~~A  455 (478)
T KOG1129|consen  451 LLNAA  455 (478)
T ss_pred             HHHHh
Confidence            99986

>KOG2003|consensus

Probab=98.85  E-value=2.6e-07  Score=84.30  Aligned_cols=224  Identities=15%  Similarity=0.114  Sum_probs=153.6

Q ss_pred             ccccHHHHHHHHHHHHhhhcc------------cccCCCCCHHHHHHHHHHHH--------------HHHHhcCCHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKT------------SLLKWKPDYDSAADDYSKAA--------------TCFKGAKSFQQCK   80 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~------------~~~~~~~~~~~A~~~y~~a~--------------~~y~~~g~~~~A~   80 (325)
                      ..++++.|++.++--.+.-.+            .+++.++++.+|..+-..+.              ++-...|++++|.
T Consensus       431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~  510 (840)
T KOG2003|consen  431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA  510 (840)
T ss_pred             hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence            345777777766532221111            01223567776666555553              2334567899999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL  159 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~  159 (325)
                      +.|.+++      .+......++.|+|..+..+|+.++|++++-+.-.|.+.      -++++..++.+|+... +.+|+
T Consensus       511 ~~ykeal------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  511 EFYKEAL------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             HHHHHHH------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHH
Confidence            9998875      345566789999999999999999999999888777553      3568999999999876 99999


Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061        160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  239 (325)
Q Consensus       160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~  239 (325)
                      ++|.++..+....      ..++.++|.+|-+-|+-.+|+.++-..-..++..-      ....-++..|+...=.++|+
T Consensus       579 e~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ydsyryfp~ni------e~iewl~ayyidtqf~ekai  646 (840)
T KOG2003|consen  579 ELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI------ETIEWLAAYYIDTQFSEKAI  646 (840)
T ss_pred             HHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcch------HHHHHHHHHHHhhHHHHHHH
Confidence            9999998776543      36889999999999999999999877666554321      11123566777777789999


Q ss_pred             HHHHhhcccC-CChHHHHHHHHHHHH-hcCCHHHHHHHh
Q psy10061        240 KAFKEWGNCC-EAPEVQTLEKLLQAF-DEEDPEGARQAL  276 (325)
Q Consensus       240 ~~~~~~~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~  276 (325)
                      .+|+++.... ....+.++  +...+ ..|+-..+-+..
T Consensus       647 ~y~ekaaliqp~~~kwqlm--iasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  647 NYFEKAALIQPNQSKWQLM--IASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             HHHHHHHhcCccHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence            9999973332 22233332  22333 366666555443

>KOG1125|consensus

Probab=98.83  E-value=9.2e-08  Score=89.47  Aligned_cols=196  Identities=13%  Similarity=0.049  Sum_probs=142.5

Q ss_pred             ccHHHHHHHHHHHHhhhcccc-c--CCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSL-L--KWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~-~--~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      +=|++.+.++++.. +....+ |  .-++| ++-++.+..+|.+....++-..|+.++++|+++-...      -.++..
T Consensus       287 dPf~eG~~lm~nG~-L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N------leaLma  358 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGD-LSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN------LEALMA  358 (579)
T ss_pred             ChHHHHHHHHhcCC-chHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc------HHHHHH
Confidence            34666666666544 222211 0  00122 4456778888999999999999999999998776532      347888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH--------------------------------------HHcCCHHHHHHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLF--------------------------------------LEQGNREAASTVLEKGA  147 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~--------------------------------------~~~g~~~~aa~~l~~lg  147 (325)
                      ++..|...|.-.+|..++.+.+...                                      +..+. ..-..+..-||
T Consensus       359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LG  437 (579)
T KOG1125|consen  359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLG  437 (579)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhH
Confidence            8888998888888888888875431                                      11110 01122345578


Q ss_pred             HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      .+|...+ |++|+.||+.||..-+..      ...+++||..+....+..+|+..|++|+.+.+.-    .  ++.+++|
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y----V--R~RyNlg  505 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY----V--RVRYNLG  505 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe----e--eeehhhh
Confidence            8888777 999999999999765443      3589999999999999999999999999984321    1  3557999


Q ss_pred             HHHHhcCCHHHHHHHHHhh
Q psy10061        227 LVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++|...|.|.+|.++|-.+
T Consensus       506 IS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  506 ISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             hhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999996

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.82  E-value=8.6e-07  Score=71.06  Aligned_cols=135  Identities=16%  Similarity=0.063  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      ..+...|..+...+. .+++..+...+.....   ..++..-+..+...++.++...|++++|+..|+.++.-.   .+.
T Consensus         9 ~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~   81 (145)
T PF09976_consen    9 EQASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDP   81 (145)
T ss_pred             HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCH
Confidence            445555555555542 5555555443333322   223333445555556666666666666666666665421   333


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      .-...+..+++.++...+ +++|+..++.       ..+...........|.+|...|++++|+..|+++
T Consensus        82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   82 ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            333334445555555544 5555555533       1111222334445555666666666665555554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.82  E-value=5.1e-07  Score=89.56  Aligned_cols=168  Identities=8%  Similarity=-0.034  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      -+..+++-.+....+....+...+-++.+..+..   ...+.++.+++.+....|++++|..+++.++++.-.      -
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~  119 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------S  119 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------c
Confidence            4667777777777777777777777777776643   334778999999999999999999999999877432      2


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      +.+..+++.++...+ +++|+..+++++......      ...+..+|.++.++|+|++|+.+|++++.-  .   + ..
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~---p-~~  187 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSRQ--H---P-EF  187 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc--C---C-Cc
Confidence            335777888888777 999999999998765443      457888999999999999999999998861  1   1 22


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNC  248 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~  248 (325)
                      ..++.++|.++...|+.++|...|+++ ..+
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            357788999999999999999999997 444

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.78  E-value=2.9e-06  Score=88.10  Aligned_cols=221  Identities=8%  Similarity=0.025  Sum_probs=129.1

Q ss_pred             chhhhhhHHHHHHhhchh-c----c------ccccccHHHHHHHHHHHHhhhcc---c------c---cCCCCCHHHHHH
Q psy10061          5 RKKEEGMEYVKSAEKHSL-S----T------MTSDRKKEEGMEYVKSAEKHLKT---S------L---LKWKPDYDSAAD   61 (325)
Q Consensus         5 ~~~~~~~~~~~~ae~~~~-~----~------~~~~~~~~eA~~l~~~A~~~~~~---~------~---~~~~~~~~~A~~   61 (325)
                      .++.+|.+++.++.+..- .    |      +...+++++|.++|.+....-..   .      +   +...+++++|.+
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e  600 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE  600 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            346778888877754211 0    1      12236788888888887542110   0      0   000233333333


Q ss_pred             HHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         62 DYSKA---------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA  126 (325)
Q Consensus        62 ~y~~a---------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A  126 (325)
                      .|..+               ...|.+.|++++|...|.++...--.   +.  ...|..+...|.+.|++++|...++..
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~---PD--~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK---PD--EVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            33322               33444555555555555443321100   00  234555555555555555555555554


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      .+    .|-... ..+++.+...|...+ +++|.+.|++....    +-... ..+|+.+...|.+.|++++|+++|++.
T Consensus       676 ~k----~G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        676 RK----QGIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSI----KLRPT-VSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HH----cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            32    221111 225666677777777 99999999876532    21122 357999999999999999999999987


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        206 IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       206 l~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...    +-.. ....|..+...+...|+++.|.+.|.+.
T Consensus       746 ~~~----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M  780 (1060)
T PLN03218        746 KRL----GLCP-NTITYSILLVASERKDDADVGLDLLSQA  780 (1060)
T ss_pred             HHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            542    2111 1246677889999999999999999998

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.77  E-value=3.2e-07  Score=91.04  Aligned_cols=170  Identities=11%  Similarity=0.005  Sum_probs=134.7

Q ss_pred             hhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061         10 GMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC   89 (325)
Q Consensus        10 ~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~   89 (325)
                      +++++.+++..+..    .+...++.+.+-++..+.        .+|..-.+.+..++.+-..+|.+++|...+..++++
T Consensus        48 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~  115 (694)
T PRK15179         48 GRELLQQARQVLER----HAAVHKPAAALPELLDYV--------RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR  115 (694)
T ss_pred             HHHHHHHHHHHHHH----hhhhcchHhhHHHHHHHH--------HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            36677777775543    234455555555555555        456666889999999999999999999999999887


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061         90 YETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV  168 (325)
Q Consensus        90 ~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~  168 (325)
                      ....      ..+..+.+.+..+.+++++|+..+++++..--      .-+..+..+|.++...+ +++|+.+|++++.-
T Consensus       116 ~Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        116 FPDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGS------SSAREILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             CCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            7543      45788889999999999999999999986522      22457889999999998 99999999999972


Q ss_pred             HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                        .-+    ...++.++|.++...|+.++|...|+++++..
T Consensus       184 --~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 --HPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             --CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence              111    24688899999999999999999999999875

>TIGR00540 hemY_coli hemY protein

Probab=98.75  E-value=3.1e-06  Score=79.78  Aligned_cols=234  Identities=13%  Similarity=0.089  Sum_probs=126.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA---------------ATCFKGAKSFQQCKEY   82 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a---------------~~~y~~~g~~~~A~~~   82 (325)
                      ..|+++.|.+.+.++.+......         ..-.++++.+.+.|.++               +.++...|++++|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            34577777777777666543210         00125555555555543               3344456777777777


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH------------------------
Q psy10061         83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA------------------------  138 (325)
Q Consensus        83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~------------------------  138 (325)
                      +.+..+...+.      ..++.-++.+|...|++++|.+.+.+..+.-.  .+...                        
T Consensus       176 l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       176 VDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             HHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            66665554321      24566777778888888877777666553200  00000                        


Q ss_pred             --------------HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        139 --------------ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       139 --------------aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                                    .......++..+...+ +++|+..++++++.........  ...+  ........++.+++++.++
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l--~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLC--LPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHH--HHhhhcCCCChHHHHHHHH
Confidence                          1112222333333334 5666666655555444321110  0011  1111222345555555555


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +++...+.  ++  .+.++..+|.+++..|++++|.++|+++  -...+..+  ....|++.+ ..|+.+++.+.+++
T Consensus       324 ~~lk~~p~--~~--~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       324 KQAKNVDD--KP--KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHhCCC--Ch--hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55443211  11  1246678999999999999999999963  22222222  344778887 59999999999887

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547|consensus

Probab=98.73  E-value=1.9e-07  Score=85.85  Aligned_cols=204  Identities=15%  Similarity=0.084  Sum_probs=149.3

Q ss_pred             cccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHH--------------HHHHHHHhcCCHHHHH
Q psy10061         24 TMTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYS--------------KAATCFKGAKSFQQCK   80 (325)
Q Consensus        24 ~~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~--------------~a~~~y~~~g~~~~A~   80 (325)
                      |.+..|++..|.+.+.++.++..+-.         ..-..+-+.-...|+              .=|.++..++++++|+
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence            55556788889999998887665411         000223333333344              4466777888999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL  159 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~  159 (325)
                      .-|.++..+...      -+..|.+++-+..++++++++...++.+..-      +....++++-.|.++..++ +++|+
T Consensus       415 aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  415 ADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHH
Confidence            999998876543      3567888888888889999999999988654      5566778999999999887 99999


Q ss_pred             HHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061        160 TLYSRAADVAHGEDNY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA  238 (325)
Q Consensus       160 ~~y~~Al~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A  238 (325)
                      +.|.+|+++-...+-. .+.+-...+.-.++.-.+++..|+.++++++++-++.    .  .++..+|.+-+.+|+.++|
T Consensus       483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc----e--~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC----E--QAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             HHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH----H--HHHHHHHHHHHHHhhHHHH
Confidence            9999999998764322 2322222233334445589999999999999874332    2  3567899999999999999


Q ss_pred             HHHHHhh
Q psy10061        239 EKAFKEW  245 (325)
Q Consensus       239 ~~~~~~~  245 (325)
                      +++|+++
T Consensus       557 ielFEks  563 (606)
T KOG0547|consen  557 IELFEKS  563 (606)
T ss_pred             HHHHHHH
Confidence            9999997

>KOG0548|consensus

Probab=98.72  E-value=2.9e-06  Score=78.98  Aligned_cols=174  Identities=15%  Similarity=0.105  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-GNRE  137 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~  137 (325)
                      .+.-+..+|+......++..++.+|..++++...++       .+.+.+-+|...|.+.+.+.....+++.-++. -++.
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it-------~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k  295 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDIT-------YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK  295 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhH-------HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence            566778899999999999999999999998884443       56677777777888888877777777665544 3455


Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--------------------hhHHHHHHHHHHHHHHcCCHH
Q psy10061        138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--------------------KQAAEYISRAARMCVRVKEFD  196 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~g~~~  196 (325)
                      -.+.++..+|..|...+ ++.++.+|++++.-++.-...                    ...+.-...-|.-+...|+|.
T Consensus       296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence            57778888999999887 999999999998877651100                    011233455688899999999


Q ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        197 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       197 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .|+.+|.++|...      ..-+.+|-|.+.||+..|.+..|+...+.+
T Consensus       376 ~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  376 EAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999988743      223467889999999999999999998887

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.71  E-value=5.5e-07  Score=74.04  Aligned_cols=115  Identities=13%  Similarity=0.020  Sum_probs=88.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      .....+.++.++|.++..+|++++|+.++++++.+..   +....+.++.++|.++...+ +++|+.+|++++.+.+...
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            3445678889999999999999999999999988742   33344568999999999988 9999999999998855432


Q ss_pred             C-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        174 N-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       174 ~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      . ....+.++..+|.++..+|+++.|+..+.+++..+++.
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            1 22334455555555559999999999999998887654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.70  E-value=3.7e-06  Score=67.32  Aligned_cols=134  Identities=23%  Similarity=0.132  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      .+...|..+...+. .++...+...+++.+   ...++..-+..+...+|.++...+ +++|+..|+++++..   .+..
T Consensus        10 ~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~---~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~   82 (145)
T PF09976_consen   10 QASALYEQALQALQ-AGDPAKAEAAAEQLA---KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE   82 (145)
T ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence            34445555555543 577777655555443   344555556667777888888776 999999999988744   3334


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ....+..+++.++...|+|++|+..++..       ......+.++...|.+++..|++++|...|+++
T Consensus        83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   83 LKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            44557778999999999999999988552       222234456677999999999999999999864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.68  E-value=2.4e-06  Score=78.63  Aligned_cols=201  Identities=12%  Similarity=0.020  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...|.-++.++...|+++.+...+.++.......-+..+   .....+.++...|++++|...++++++....  +. . 
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~-~-   78 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERE---RAHVEALSAWIAGDLPKALALLEQLLDDYPR--DL-L-   78 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cH-H-
Confidence            345666778888899999998888888877764433332   2334566778889999999999999876322  21 1 


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                        .+.. +..+...+ +..+.....+++..  ...........+..+|.++..+|++++|+..+++++.+.+..      
T Consensus        79 --a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------  147 (355)
T cd05804          79 --ALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------  147 (355)
T ss_pred             --HHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Confidence              1221 22222221 22222223333333  222334445677789999999999999999999999875332      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH--HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE--VQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e--~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ...+..+|.++...|++++|..++++. +.......  ......++..+ ..|+.+.+...+.+
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  211 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT  211 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            245678999999999999999999997 33321111  22333566665 69999999888876

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.67  E-value=4.5e-07  Score=72.61  Aligned_cols=97  Identities=11%  Similarity=-0.060  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +...|.++...|++++|+.+|++++.+-.      .-..++..+|.++...+ +++|+.+|++++.+....      ..+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQP------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence            34567777888888888888888775521      12346788888888777 888888888888764432      357


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      +.++|.++..+|++++|+..|++++.+.+.
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            778888888888888888888888876443

>KOG2076|consensus

Probab=98.67  E-value=1.2e-05  Score=79.00  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ......+..++..|...+ +++|+.++........-.     .+.+|.++|.+|..+|.|++|+..|++++.+.+..-  
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-----~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~--  483 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-----NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL--  483 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-----chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch--
Confidence            333444556666666665 777777776655432221     145889999999999999999999999998754321  


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW--------GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--------~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                          .+...|..++..+|++++|.+.+.+.        +......+.+++....+.+ ..|+.+.+......
T Consensus       484 ----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~  551 (895)
T KOG2076|consen  484 ----DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST  551 (895)
T ss_pred             ----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                23457899999999999999999994        2234556777887778876 58998887765443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.65  E-value=1.8e-06  Score=72.94  Aligned_cols=133  Identities=13%  Similarity=0.035  Sum_probs=95.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CV  190 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~  190 (325)
                      .++.++++..+++++..--  ++    +..+..+|.+|...+ +++|+.+|++|+.+....      ..++..+|.+ +.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P--~~----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            4566777777777765422  22    336888999998887 999999999999887643      3577888886 46


Q ss_pred             HcCC--HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc-CCChHHHHHHHHHHH
Q psy10061        191 RVKE--FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC-CEAPEVQTLEKLLQA  263 (325)
Q Consensus       191 ~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~-~~~~e~~~l~~L~~a  263 (325)
                      ..|+  +++|...+++++...+.      ...++..+|.+++..|++++|+.+|++. ... .+.....++..+-.+
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~a  190 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDAN------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINMA  190 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence            7777  58999999999886332      1246678999999999999999999997 222 233344455554444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.65  E-value=7.1e-06  Score=77.05  Aligned_cols=97  Identities=16%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------Hc--ccH--------------HHHHHHHHHHHHHHHhcCC
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ---------ES--EHL--------------LAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------~~--~~~--------------~~~~~~~~~lg~~~~~~gd  234 (325)
                      .+...++..+...|+.++|...+++++....         .+  +++              ......++.+|.+++..|+
T Consensus       264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            4555677788888888888888877765210         00  110              0112346677888888888


Q ss_pred             HHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        235 TVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       235 ~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +++|.++|++.-...++.+  ....|+.++ ..|+++.+..+.++
T Consensus       344 ~~~A~~~le~al~~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        344 WQEASLAFRAALKQRPDAY--DYAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             HHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888888722222222  233466666 47888888777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.64  E-value=1.8e-06  Score=86.91  Aligned_cols=93  Identities=11%  Similarity=-0.029  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEK  259 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~  259 (325)
                      +|+.+...|.+.|+.++|+++|++....    |-.. ...++..+..++...|+.++|.+.|+.. ..+.-........-
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAE----GVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence            4556666666666666666666665432    2111 1134566666667777777777777765 22221122223444


Q ss_pred             HHHHH-hcCCHHHHHHHhcC
Q psy10061        260 LLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       260 L~~a~-~~gd~~~~~~~~~~  278 (325)
                      |++.+ ..|+.+++.+.+++
T Consensus       468 li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHH
Confidence            56666 47777777777665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=1.9e-06  Score=70.86  Aligned_cols=115  Identities=11%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061         55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG  134 (325)
Q Consensus        55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g  134 (325)
                      +-+..+.+|...|.++...|++++|...|.+++.+..   ++...+.++.++|.+|...|++++|+.++++++.+....+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            3466788899999999999999999999999998753   3344567899999999999999999999999998754433


Q ss_pred             C-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        135 N-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       135 ~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      . ....+.++.++|..+...+ ++.|+..+.+++.+++..
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            2 2233344444444444665 888888888777776653

>KOG0550|consensus

Probab=98.60  E-value=4.5e-06  Score=75.56  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=96.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQ---G---NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~---g---~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .++.-.++.+.++.++++++.+-...   +   ..........+-|+-....+ +..|.++|.+||.+-+...  ...+.
T Consensus       211 ~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~nak  288 (486)
T KOG0550|consen  211 LCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAK  288 (486)
T ss_pred             cccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHH
Confidence            33444456777778888877653222   1   11222333444455555555 9999999999999887743  33467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +|.+.+.+.+++|+..+|+.-+++++.|-.+      -.+++...+.||+..++++.|.+.|+++
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~s------yikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSS------YIKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999987322      2357788999999999999999999998

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.60  E-value=1.4e-06  Score=69.80  Aligned_cols=104  Identities=13%  Similarity=0.000  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061        121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  199 (325)
                      .++++++.+-..         .+...|.++...+ +++|+.+|++++.+-...      ..++..+|.++..+|++++|+
T Consensus        14 ~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         14 DILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence            456666655322         1345677877777 999999999998764432      468899999999999999999


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..|++++.+.+.      -..+++++|.++...|++++|+..|+++
T Consensus        79 ~~y~~Al~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         79 NFYGHALMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             HHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999986322      2246789999999999999999999997

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.58  E-value=5.1e-06  Score=68.57  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061         93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      .......+.++.+.|.+|...|++++|+.++++++.+....   ...+..+.++|.++...+ +++|+.+|++++.+...
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            34556778899999999999999999999999998875432   223568899999999888 99999999999987543


Q ss_pred             CCChhhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHH
Q psy10061        172 EDNYKQAAEYISRAARMCVRVK-------EFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       172 ~~~~~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~  211 (325)
                      .      ...+..+|.++...|       ++++|+..+++++..+++
T Consensus       105 ~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~  145 (172)
T PRK02603        105 Q------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ  145 (172)
T ss_pred             c------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence            2      245556677776655       466666666666665544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.58  E-value=1.1e-05  Score=75.68  Aligned_cols=199  Identities=9%  Similarity=0.011  Sum_probs=125.9

Q ss_pred             cccccHHHHHHHHHHHHhhhccc-c---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTS-L---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKE   81 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~-~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~   81 (325)
                      ...|++++|.+++.+|.+..... +         ....++++.|...++++              +.+|...|+|+++.+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            33456777777777776644331 0         01146666666666654              567888899998886


Q ss_pred             HHHHHHHHHHh----------------------cCCh--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061         82 YLLKAANCYET----------------------NKSA--------------YHAAKHLEQAIMMCKELNDLTDVENLAKQ  125 (325)
Q Consensus        82 ~~~~a~~~~~~----------------------~~~~--------------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~  125 (325)
                      .+.+.......                      ..+.              ..-.......+..+...|+.++|....++
T Consensus       209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~  288 (398)
T PRK10747        209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD  288 (398)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66554432110                      0000              01122334456667777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        126 AATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      +++   ...+. ..+..+..+    ...++++++...++.++..+++      ...+..+|.++...|+|++|.++|+++
T Consensus       289 ~l~---~~~~~-~l~~l~~~l----~~~~~~~al~~~e~~lk~~P~~------~~l~l~lgrl~~~~~~~~~A~~~le~a  354 (398)
T PRK10747        289 GLK---RQYDE-RLVLLIPRL----KTNNPEQLEKVLRQQIKQHGDT------PLLWSTLGQLLMKHGEWQEASLAFRAA  354 (398)
T ss_pred             HHh---cCCCH-HHHHHHhhc----cCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            654   22232 111111111    1124888888888877655432      357778999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        206 IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       206 l~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.+.+     ..  ..+..++.++..+|+.++|.++|++.
T Consensus       355 l~~~P-----~~--~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        355 LKQRP-----DA--YDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HhcCC-----CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88632     11  23456899999999999999999986

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.58  E-value=4.8e-06  Score=83.86  Aligned_cols=196  Identities=11%  Similarity=-0.000  Sum_probs=124.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHH
Q psy10061         66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA---------------TLF  130 (325)
Q Consensus        66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~---------------~~~  130 (325)
                      +...|...|++++|...|.+....--..     -...|..+...|.+.|++++|...+....               +.|
T Consensus       296 li~~y~~~g~~~eA~~lf~~M~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y  370 (697)
T PLN03081        296 MLAGYALHGYSEEALCLYYEMRDSGVSI-----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY  370 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence            4556666677777766666653221111     12356666777777777777776665543               345


Q ss_pred             HHcCCHHHHHHHHH-----------HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10061        131 LEQGNREAASTVLE-----------KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA  198 (325)
Q Consensus       131 ~~~g~~~~aa~~l~-----------~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  198 (325)
                      .+.|+.+.|...+.           .+...|-..+ .++|++.+++..+.    |-... ..++..+...+...|..++|
T Consensus       371 ~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             HHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHH
Confidence            56666666665543           4455565555 78888888776532    22222 24678888888999999999


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061        199 ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALN  277 (325)
Q Consensus       199 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~  277 (325)
                      ..+|+...+..   +-.. ....|..++.++...|++++|.+.+++.+.-.+   ..+...|+.++ ..|+.+.+..+.+
T Consensus       446 ~~~f~~m~~~~---g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~  518 (697)
T PLN03081        446 WEIFQSMSENH---RIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPT---VNMWAALLTACRIHKNLELGRLAAE  518 (697)
T ss_pred             HHHHHHHHHhc---CCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99988776432   2111 123567788899999999999998887632221   33456677777 5888888877766


Q ss_pred             C
Q psy10061        278 D  278 (325)
Q Consensus       278 ~  278 (325)
                      +
T Consensus       519 ~  519 (697)
T PLN03081        519 K  519 (697)
T ss_pred             H
Confidence            4

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.57  E-value=1.9e-05  Score=68.87  Aligned_cols=175  Identities=14%  Similarity=0.040  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      +...|.++-.. ...|+|++|++.|++....+..   ...+..+...+|.+|.+++++++|+.++++.+..+....+.  
T Consensus        32 ~~~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--  105 (243)
T PRK10866         32 PSEIYATAQQK-LQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--  105 (243)
T ss_pred             HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--
Confidence            44456654444 4578888888888888776653   24556678899999999999999999999999887776554  


Q ss_pred             HHHHHHHHHHHHhcc----------------C---HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHH
Q psy10061        139 ASTVLEKGAKSLEEL----------------K---SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARM  188 (325)
Q Consensus       139 aa~~l~~lg~~~~~~----------------~---~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~  188 (325)
                       ..++..+|..+...                +   ...|+..+++.++.++...-...+           +.--..+|..
T Consensus       106 -~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~  184 (243)
T PRK10866        106 -DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY  184 (243)
T ss_pred             -HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             44566666553111                2   356778888888887765321111           1112244555


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061        189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFK  243 (325)
Q Consensus       189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~  243 (325)
                      |.+.|+|..|+.-++.+++-++....   ...++..++.+|...|..+.|.....
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQA---TRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            66666666666666666655544322   22345556666666666666655443

>PLN03077 Protein ECB2; Provisional

Probab=98.56  E-value=2e-05  Score=81.30  Aligned_cols=51  Identities=10%  Similarity=0.005  Sum_probs=27.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA  127 (325)
Q Consensus        68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~  127 (325)
                      .+|.+.|++++|.+.|.+..       ++.  ...|+.+...|...|++++|+..|++..
T Consensus       432 ~~y~k~g~~~~A~~vf~~m~-------~~d--~vs~~~mi~~~~~~g~~~eA~~lf~~m~  482 (857)
T PLN03077        432 EMYSKCKCIDKALEVFHNIP-------EKD--VISWTSIIAGLRLNNRCFEALIFFRQML  482 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhCC-------CCC--eeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44555555555555554421       110  1245556666666666666666666653

>KOG3617|consensus

Probab=98.55  E-value=1.4e-05  Score=77.89  Aligned_cols=181  Identities=18%  Similarity=0.218  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Q psy10061         54 PDYDSAADDYSKAATCFK------GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA-  126 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A-  126 (325)
                      ++.+.|...|..|-+-|.      .+|+.++|..       +.++.||.    .+...++..|...|++.+|+..|.+| 
T Consensus       926 GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~-------iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  926 GEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR-------IAEESGDK----AACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             cchHHHHHHHHHhhhhhhheeeEeeccCchHHHH-------HHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            555555555555544332      3444444333       33333432    24456788888889999998887764 


Q ss_pred             -----HHHHHHcCCHHHHHHH--------HHHHHHHHhccC--HHHHHHHHHHH------HHHHh------------cCC
Q psy10061        127 -----ATLFLEQGNREAASTV--------LEKGAKSLEELK--SDAALTLYSRA------ADVAH------------GED  173 (325)
Q Consensus       127 -----~~~~~~~g~~~~aa~~--------l~~lg~~~~~~~--~~~A~~~y~~A------l~~~~------------~~~  173 (325)
                           +.+.++++..++.++.        +...+.+|+..+  .+.|..+|.+|      +++.-            +.=
T Consensus       995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen  995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence                 5566666655544433        234566677665  67777777654      33321            111


Q ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcc-----------------cH--HHHHHHHHHHHHH
Q psy10061        174 NYKQAAEYISRAARMCVRVKEFDKAADLI------RQEIGYHQESE-----------------HL--LAIGRLAVALVLV  228 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~-----------------~~--~~~~~~~~~lg~~  228 (325)
                      +...-...+++.+..+....+|++|+.++      ++|+.++..-+                 .+  ...-+.+..++.+
T Consensus      1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred             CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence            22222468899999999999999998764      55666653211                 11  2345678899999


Q ss_pred             HHhcCCHHHHHHHHHhh
Q psy10061        229 QLARGDTVAAEKAFKEW  245 (325)
Q Consensus       229 ~~~~gd~~~A~~~~~~~  245 (325)
                      ++.+|+|-.|-+-|-++
T Consensus      1155 c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHhccchHHHHHHHhhh
Confidence            99999999998888874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.54  E-value=3.3e-05  Score=65.57  Aligned_cols=168  Identities=15%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      ..+...|..+...|++.+|+..+++....+....-   +..+...+|..+...+ +++|+..+++-+..++....   ..
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~   79 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---AD   79 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hh
Confidence            44455555555566666666666666555444332   2234455566655554 66666666666666655432   23


Q ss_pred             HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHhcCCHHH
Q psy10061        180 EYISRAARMCVRV-----------KEFDKAADLIRQEIGYHQESEH-----------LLAIGRLAVALVLVQLARGDTVA  237 (325)
Q Consensus       180 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~gd~~~  237 (325)
                      .++..+|.++..+           +...+|+..|+..+..++....           ....+.--+.+|..|+..|.+..
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            4444555544332           2334677777776666654321           11223334568888999999999


Q ss_pred             HHHHHHhh-cccCCChHH-HHHHHHHHHH-hcCCHHHHHH
Q psy10061        238 AEKAFKEW-GNCCEAPEV-QTLEKLLQAF-DEEDPEGARQ  274 (325)
Q Consensus       238 A~~~~~~~-~~~~~~~e~-~~l~~L~~a~-~~gd~~~~~~  274 (325)
                      |...++.. ..|.++... .++..|++++ ..|..+.+..
T Consensus       160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            99999997 777766644 5777888887 5777775443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.54  E-value=1.4e-06  Score=73.60  Aligned_cols=122  Identities=12%  Similarity=0.044  Sum_probs=96.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-h
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL-E  151 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~-~  151 (325)
                      .++.++++..+.+++......      ...+..+|.+|...|++++|+.+|++|+.+.-..      ...+..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            455677777777766555332      4578999999999999999999999998775332      33677888864 4


Q ss_pred             ccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        152 ELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       152 ~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ..+   +++|...+++++.+....      ..++..+|..+.+.|+|++|+.++++++++.+..
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            443   599999999999876553      3588899999999999999999999999986553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.53  E-value=2.1e-05  Score=68.66  Aligned_cols=170  Identities=8%  Similarity=-0.047  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .+...|..+...|++++|+..|++.+..+...   .-+..+...+|.+|...+ +++|+..+++.+..++...+   ...
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~  107 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY  107 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH
Confidence            34455666677799999999999998876643   445556788999998887 99999999999999987754   346


Q ss_pred             HHHHHHHHHHHcC------------------CHHHHHHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHh
Q psy10061        181 YISRAARMCVRVK------------------EFDKAADLIRQEIGYHQESEH-----------LLAIGRLAVALVLVQLA  231 (325)
Q Consensus       181 ~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~~  231 (325)
                      ++..+|.++...+                  ...+|+..|++.+..++...-           ....+.--+.+|.-|+.
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777887754443                  134688889998888765321           12233344578999999


Q ss_pred             cCCHHHHHHHHHhh-cccCCChH-HHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061        232 RGDTVAAEKAFKEW-GNCCEAPE-VQTLEKLLQAF-DEEDPEGARQALN  277 (325)
Q Consensus       232 ~gd~~~A~~~~~~~-~~~~~~~e-~~~l~~L~~a~-~~gd~~~~~~~~~  277 (325)
                      .|.+..|..-++.. ..|.++.. .++|..|.+++ ..|.++.+.+.++
T Consensus       188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999998 67765543 36788899998 6999999988654

>PLN03077 Protein ECB2; Provisional

Probab=98.51  E-value=2.9e-05  Score=80.18  Aligned_cols=224  Identities=11%  Similarity=0.055  Sum_probs=131.8

Q ss_pred             hhhhhHHHHHHhhchhc-----c------ccccccHHHHHHHHHHHHhhhcc-------cc---cCCCCCHHHHHHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLS-----T------MTSDRKKEEGMEYVKSAEKHLKT-------SL---LKWKPDYDSAADDYSK   65 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~-----~------~~~~~~~~eA~~l~~~A~~~~~~-------~~---~~~~~~~~~A~~~y~~   65 (325)
                      +.+|.+++.++++..-.     |      +...+++++|.+++..+.+.--.       .+   ..-.+++++|.+.|.+
T Consensus       370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            56667777766543210     0      11235677777777766543110       00   0114778888887765


Q ss_pred             H-----------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Q psy10061         66 A-----------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA--------  126 (325)
Q Consensus        66 a-----------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A--------  126 (325)
                      .           ...|...|++++|...|.++..-   .. +  -...|..+...+.+.|+.+.+.+.+..+        
T Consensus       450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~~-p--d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LK-P--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---CC-C--CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence            4           56788899999999999988631   11 1  1223334444444444444444443322        


Q ss_pred             -------HHHHHHcCCHHHHHH----------HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061        127 -------ATLFLEQGNREAAST----------VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM  188 (325)
Q Consensus       127 -------~~~~~~~g~~~~aa~----------~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~  188 (325)
                             ++.|.+.|+...+..          +|+.+...|-..+ .++|++.|++..+.    |.... ..++..+-..
T Consensus       524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a  598 (857)
T PLN03077        524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPD-EVTFISLLCA  598 (857)
T ss_pred             ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-cccHHHHHHH
Confidence                   223334444333322          4666666676666 88888888876532    21111 1356667777


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        189 CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       189 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.+.|++++|..+|++....+.-  .+.  ...|..++.++...|++++|.+.+++.
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi--~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSI--TPN--LKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCC--CCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            88888999998888877643211  111  135677888888999999999888886

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.49  E-value=7.8e-05  Score=63.26  Aligned_cols=165  Identities=13%  Similarity=0.033  Sum_probs=112.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061         66 AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK  145 (325)
Q Consensus        66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~  145 (325)
                      .|..+...|+|.+|+..|.+....+...   ..+..+...+|.+|...|++++|+..+++-+..+-......   .++..
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~A~Y~   84 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---YALYM   84 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---HHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---hHHHH
Confidence            3444556777777777777776666543   24456778889999999999999999999888777665443   34555


Q ss_pred             HHHHHhcc-----------C-HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061        146 GAKSLEEL-----------K-SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARMCVRVKEFDKAADLI  202 (325)
Q Consensus       146 lg~~~~~~-----------~-~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~  202 (325)
                      +|..+...           . ..+|+..++..+..++...-...+           +.--..+|..|.+.|.|..|+..+
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~  164 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF  164 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            55553221           1 678999999999988876533222           223346788999999999999999


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061        203 RQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  239 (325)
Q Consensus       203 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~  239 (325)
                      +.+++-++.+.   ....++..++.+|...|....|.
T Consensus       165 ~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  165 QYVIENYPDTP---AAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHHH
Confidence            99998876653   23457788999999999988554

>TIGR00540 hemY_coli hemY protein

Probab=98.46  E-value=2.4e-05  Score=73.76  Aligned_cols=134  Identities=10%  Similarity=0.007  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      ...+...+..+...|++++|...++++++..-......  -..+..++. +...+.+.+++..++++...+..   .. .
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~-l~~~~~~~~~~~~e~~lk~~p~~---~~-~  335 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPR-LKPEDNEKLEKLIEKQAKNVDDK---PK-C  335 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhh-cCCCChHHHHHHHHHHHHhCCCC---hh-H
Confidence            34555556677777888888888887776433221110  011222221 22234788888888887654433   11 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+..+|.++.+.|+|++|.++|+++..+...   +...  .+..+|.++...|+.++|.+++++.
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~---p~~~--~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ---LDAN--DLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC---CCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57789999999999999999999954332211   1122  2346899999999999999999985

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1125|consensus

Probab=98.44  E-value=1.5e-06  Score=81.47  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ..+...+|.+|.-.|+|++|++||+.|+..--..      ...++++|-++...+ .++|+..|++|+++.+.-      
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------  497 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------  497 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------
Confidence            4678889999999999999999999998653222      337999999999887 999999999999987642      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ..+..++|..++.+|-|.+|+++|-.||.+.+..
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            3467799999999999999999999999987763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.42  E-value=1.6e-05  Score=68.10  Aligned_cols=156  Identities=17%  Similarity=0.095  Sum_probs=115.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .+....+.-.|+-+.+..+..+++..+.+...      .+.-.|......+ +.+|+..++++..+.+.+      .+.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d------~~~~  137 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD------WEAW  137 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHH------HHHHHHHHHHHhcchHHHHHHHHHHhccCCCC------hhhh
Confidence            55566666667777777666665544333221      2333666666665 999999999998876554      3688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQ  262 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~  262 (325)
                      +-+|.+|-+.|+.++|..-|.++++++..      ...+.+|+|..++-.||+..|..++.+...- ......+..+|..
T Consensus       138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl  210 (257)
T COG5010         138 NLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLAL  210 (257)
T ss_pred             hHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence            89999999999999999999999998643      2246689999999999999999999997111 1223457778888


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      +. ..||++.+++...+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            87 49999999998776

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.39  E-value=5.7e-06  Score=63.19  Aligned_cols=104  Identities=10%  Similarity=0.002  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      ..+...|..+...|++++|+..+++++....   +......++..+|.++...+ +++|+.+|++++..+....   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence            4567778888888888888888888775432   22223455677888877776 8888888888877654322   123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      .++..+|.++..+|++++|+.++++++...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence            4667788888888888888888888777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.38  E-value=1.5e-06  Score=62.35  Aligned_cols=95  Identities=13%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ++.++|.++...|++++|+.++++++.......      .++..+|.++...+ +++|+.++++++.+.....      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence            456677777777888888887777766532221      45667777777665 7788888877776544322      4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ++..+|.++...|++++|..++.+++.+
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            6667777888888888888777776653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.38  E-value=1.4e-05  Score=63.98  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ...-.....+|..+...|++++|...|+..+.+-      ..-...+.++|.+++..+ +.+|+.+|.+|+.+-..  + 
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--d-  102 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--A-  102 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C-
Confidence            3444555666777777799999999998877652      223457889999999887 99999999999887643  2 


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                         ...+.++|.++...|+.+.|.+.|+.++..+.
T Consensus       103 ---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        103 ---PQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               25778899999999999999999999998874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=2.3e-05  Score=79.41  Aligned_cols=182  Identities=8%  Similarity=-0.049  Sum_probs=121.8

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .|++.+|++.|.++.+....        ...++.   ..+.++...|++++|+.++++++  ...    ......+..+|
T Consensus        47 ~Gd~~~Al~~L~qaL~~~P~--------~~~av~---dll~l~~~~G~~~~A~~~~eka~--~p~----n~~~~~llalA  109 (822)
T PRK14574         47 AGDTAPVLDYLQEESKAGPL--------QSGQVD---DWLQIAGWAGRDQEVIDVYERYQ--SSM----NISSRGLASAA  109 (822)
T ss_pred             CCCHHHHHHHHHHHHhhCcc--------chhhHH---HHHHHHHHcCCcHHHHHHHHHhc--cCC----CCCHHHHHHHH
Confidence            45677777777776554422        221111   44566667799999999999887  111    11234555668


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|..+|++++|++.|+++++......      .++.-++.++...+ +++|++.++++.......       ..+..++
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-------~~~l~la  176 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPTV-------QNYMTLS  176 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-------HHHHHHH
Confidence            899999999999999999976644332      23445567777766 999999998887765441       1223456


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++..++++.+|+..++++++..+..      ..++..+..+....|-...|.+...+.
T Consensus       177 yL~~~~~~~~~AL~~~ekll~~~P~n------~e~~~~~~~~l~~~~~~~~a~~l~~~~  229 (822)
T PRK14574        177 YLNRATDRNYDALQASSEAVRLAPTS------EEVLKNHLEILQRNRIVEPALRLAKEN  229 (822)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence            66666788877999999998874332      134455667777778888888887776

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=2.6e-05  Score=79.08  Aligned_cols=190  Identities=13%  Similarity=0.024  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      ..|.+ +.+....|+++.|++.|.++++......     ..++ .++.++...|++++|+.++++++  -.....    .
T Consensus        36 ~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~----~  102 (822)
T PRK14574         36 TQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----S  102 (822)
T ss_pred             HHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC----H
Confidence            45555 4555688999999999999987765421     1122 77788888899999999999998  111222    2


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ..+.-+|.++...+ +++|++.|+++++.....      ..++..++.+|...+++++|+..+++++.....       .
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~  169 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERDPT-------V  169 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------h
Confidence            24455577888876 999999999999877654      245567789999999999999999988775433       1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..+..++.++...++..+|++.+++. ..+....  .++..+..+. ..|-.+.+.+..++
T Consensus       170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~--e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        170 QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE--EVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            12233455555577787799999998 4444332  3455556665 57777777777765

>KOG0553|consensus

Probab=98.36  E-value=3.6e-05  Score=67.25  Aligned_cols=96  Identities=21%  Similarity=0.222  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061        138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  216 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  216 (325)
                      ..++.+..=|.-+...+ |.+|+..|.+|+++-...      +-.|.+-+.+|.++|.|+.|++-++.+|.+-    ...
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~y  148 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHY  148 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHH
Confidence            34455566666665555 999999999999987654      3467899999999999999999999998862    223


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        217 AIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .  ++|.++|.+|+.+|++..|++.|+++
T Consensus       149 s--kay~RLG~A~~~~gk~~~A~~aykKa  175 (304)
T KOG0553|consen  149 S--KAYGRLGLAYLALGKYEEAIEAYKKA  175 (304)
T ss_pred             H--HHHHHHHHHHHccCcHHHHHHHHHhh
Confidence            3  57889999999999999999999998

>PLN02789 farnesyltranstransferase

Probab=98.33  E-value=0.0002  Score=64.94  Aligned_cols=174  Identities=11%  Similarity=0.023  Sum_probs=114.9

Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         67 ATCFKGAK-SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL--TDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        67 ~~~y~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~--~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                      +.++..+| ++++++.++.+++....+.      ..++...+.++...|+.  .+++.++.+++++-.  .++    .++
T Consensus        78 ~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp--kNy----~AW  145 (320)
T PLN02789         78 RLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA--KNY----HAW  145 (320)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc--ccH----HHH
Confidence            45566666 5788999988888765543      22456666666777763  677888888875532  232    368


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHcccH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV---KEF----DKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~  215 (325)
                      ...+.++...+ ++++++++.+++++-...      ..++...+.+....   |.+    ++++++..++|.+.+...+ 
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S-  218 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES-  218 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC-
Confidence            88888888887 999999999999875443      25777788777665   333    4678888888887544322 


Q ss_pred             HHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHh
Q psy10061        216 LAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFD  265 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~  265 (325)
                           +++.++.++..    .+...+|.+.+.+.... ...-..+|.-|++.+.
T Consensus       219 -----aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~  266 (320)
T PLN02789        219 -----PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLC  266 (320)
T ss_pred             -----HHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHH
Confidence                 44556666655    34556788877775111 1222346777777764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=6.1e-05  Score=76.09  Aligned_cols=228  Identities=16%  Similarity=0.103  Sum_probs=139.8

Q ss_pred             ccccHHHHHHHHHHHHhhhcccc----------cCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSL----------LKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA   96 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~----------~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~   96 (325)
                      ..+++++++.++..+.+.....+          ++ .+++.+++..  .++.++....++ .+.+++...      +++.
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~------i~~~  112 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDK------ILLY  112 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccch-hHHHHHHHH------HHhh
Confidence            34688999999998887776532          11 2344444444  555555555555 344443332      2222


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      ...-.++..+|.||.++|++++|...|++++++-      ..-+.+++++|-.|...+.++|++++.+|+..+-....+.
T Consensus       113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~  186 (906)
T PRK14720        113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYV  186 (906)
T ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcch
Confidence            2333488899999999999999999999998774      3335589999999987799999999999998876555554


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ  255 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~  255 (325)
                      ...+.+..+-.  ...-+++.=+.+.++.+.   +++ .......+.-+-.+|...+|+++++..++.. .....  ...
T Consensus       187 ~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~---~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~--n~~  258 (906)
T PRK14720        187 GIEEIWSKLVH--YNSDDFDFFLRIERKVLG---HRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK--NNK  258 (906)
T ss_pred             HHHHHHHHHHh--cCcccchHHHHHHHHHHh---hhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc--chh
Confidence            44444433322  222233322222222211   111 1222234555667788888888888888887 22221  344


Q ss_pred             HHHHHHHHHh--cCCHHHHHHHhcC
Q psy10061        256 TLEKLLQAFD--EEDPEGARQALND  278 (325)
Q Consensus       256 ~l~~L~~a~~--~gd~~~~~~~~~~  278 (325)
                      ++..|.+.+.  -++...+.++++-
T Consensus       259 a~~~l~~~y~~kY~~~~~~ee~l~~  283 (906)
T PRK14720        259 AREELIRFYKEKYKDHSLLEDYLKM  283 (906)
T ss_pred             hHHHHHHHHHHHccCcchHHHHHHH
Confidence            5667777763  5567777777765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.31  E-value=2.8e-05  Score=64.16  Aligned_cols=95  Identities=14%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ......+..+.++|.++...+ +++|+.+|++++.+.....   ....++.++|.++...|++++|+.++++++.+.+..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            445566778899999998877 9999999999998765432   234688999999999999999999999999874432


Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061        213 EHLLAIGRLAVALVLVQLARGDTVA  237 (325)
Q Consensus       213 ~~~~~~~~~~~~lg~~~~~~gd~~~  237 (325)
                            ...+..+|.++...|+...
T Consensus       106 ------~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603        106 ------PSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             ------HHHHHHHHHHHHHcCChHh
Confidence                  2344566777776665433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.31  E-value=1.4e-05  Score=60.90  Aligned_cols=105  Identities=10%  Similarity=-0.022  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ..+..+|..+...+ +++|+..|.+++......   .....++..+|.++...|++++|+.+|++++...+...   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence            45677888887776 999999999998765432   22245778899999999999999999999987653221   123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA  251 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~  251 (325)
                      .++..+|.++...|++++|..+++++ ..+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            46788999999999999999999997 555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1174|consensus

Probab=98.30  E-value=4.1e-05  Score=69.56  Aligned_cols=183  Identities=11%  Similarity=0.045  Sum_probs=136.1

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM  109 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~  109 (325)
                      ++..|+.+-.|+...-.+           -.+.|--=|++....++.++|+-+|+.|..+..      ---.+|..+..+
T Consensus       315 ~~~rAL~~~eK~I~~~~r-----------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  315 KFERALNFVEKCIDSEPR-----------NHEALILKGRLLIALERHTQAVIAFRTAQMLAP------YRLEIYRGLFHS  377 (564)
T ss_pred             hHHHHHHHHHHHhccCcc-----------cchHHHhccHHHHhccchHHHHHHHHHHHhcch------hhHHHHHHHHHH
Confidence            566666665555443322           122333447788899999999999999876652      123589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA-KSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg-~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      |...|++.||.-.-+.++..+...      ++++..+| .++... . -++|-.+|++++.+-+   .+   ..+...++
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~s------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P---~Y---~~AV~~~A  445 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQNS------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP---IY---TPAVNLIA  445 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhcc------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCC---cc---HHHHHHHH
Confidence            999999999998888887765443      44677776 444433 3 8999999999987532   22   34567899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccc
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC  248 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~  248 (325)
                      +++..-|++..++.++++.|.++...       ..+..+|.+..+.+.+.+|.++|..+-..
T Consensus       446 EL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  446 ELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHhhCccchHHHHHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99999999999999999999876432       35677999999999999999999998333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.30  E-value=3e-05  Score=62.07  Aligned_cols=97  Identities=20%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ......+..+|..+...+ +++|...|+-...+-...      ...+.++|.++..+|+|.+|+..|.+++.+..  +++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp  103 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAP  103 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc
Confidence            334445555665555555 999999998877664332      45788999999999999999999999988742  232


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                          ..+.++|.|++..|+.+.|.+.|+.+
T Consensus       104 ----~~~~~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        104 ----QAPWAAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             ----hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                45678999999999999999999997

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.29  E-value=2.7e-05  Score=61.13  Aligned_cols=99  Identities=15%  Similarity=0.036  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ...+..+|.++...|++++|..++++++.+...      -...+..+|.++...+ +++|+.++++++.+....      
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence            345667777777777777777777776654211      1345667777776665 777777777776654322      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ...+..+|.+|...|++++|+.+|++++.+.+
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            24566677777777777777777777777644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.28  E-value=4.6e-06  Score=59.65  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      ++.++|.++...+ +++|+..++++++.....      ..++..+|.++...+++++|+.+|++++.+.+...      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence            4667788877776 999999999998765432      15778899999999999999999999887643321      4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++..++.++...|+++.|...+.++
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            6678999999999999999998876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.27  E-value=9.9e-06  Score=58.34  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      ++.|+.+++++++.....  +  ....+..+|.+|.++|+|++|+.++++ +....    ..  ......+|.|++.+|+
T Consensus         5 y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~--~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SN--PDIHYLLARCLLKLGK   73 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CH--HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CC--HHHHHHHHHHHHHhCC
Confidence            899999999999887652  1  334677799999999999999999988 33221    11  1234456999999999


Q ss_pred             HHHHHHHHHhh
Q psy10061        235 TVAAEKAFKEW  245 (325)
Q Consensus       235 ~~~A~~~~~~~  245 (325)
                      +++|+++|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.25  E-value=1.8e-05  Score=67.72  Aligned_cols=157  Identities=19%  Similarity=0.119  Sum_probs=121.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                      .+....+...|+-+++..+..+++..+.+.      ...+...|......|+|.+|+..++++..+-...+      +.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~  137 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKD------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAW  137 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCccc------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhh
Confidence            556667778888888888777765544332      12333378888899999999999999987644333      468


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      +-+|.+|.+.+ .+.|..-|.+|++++....      .+++|+|..|.-.|++..|..++.++...-      ..-..+.
T Consensus       138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~ad~~v~  205 (257)
T COG5010         138 NLLGAALDQLGRFDEARRAYRQALELAPNEP------SIANNLGMSLLLRGDLEDAETLLLPAYLSP------AADSRVR  205 (257)
T ss_pred             hHHHHHHHHccChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CCchHHH
Confidence            89999999998 9999999999999987653      588999999999999999999998875421      1112345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHh
Q psy10061        223 VALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      .+++.+...+||+..|.+.-.+
T Consensus       206 ~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         206 QNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHhhcCChHHHHhhccc
Confidence            6899999999999999776554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.24  E-value=2.5e-05  Score=72.14  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q psy10061        149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV  228 (325)
Q Consensus       149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  228 (325)
                      .+...+++.|+.+|.+|+.+....      ..++.++|.+|..+|++++|+..+++++.+.+.      ...+++.+|.+
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~   79 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTA   79 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHH
Confidence            333444888888888888765432      357778888888888888888888888876432      12356778888


Q ss_pred             HHhcCCHHHHHHHHHhh
Q psy10061        229 QLARGDTVAAEKAFKEW  245 (325)
Q Consensus       229 ~~~~gd~~~A~~~~~~~  245 (325)
                      ++.+|+++.|+..|+++
T Consensus        80 ~~~lg~~~eA~~~~~~a   96 (356)
T PLN03088         80 CMKLEEYQTAKAALEKG   96 (356)
T ss_pred             HHHhCCHHHHHHHHHHH
Confidence            88888888888888887

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.24  E-value=7.5e-06  Score=56.45  Aligned_cols=63  Identities=8%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGY  208 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~  208 (325)
                      +..+..+|.++...+ +++|+.+|.+++++...      -..++.++|.+|..+| ++.+|+..+++++.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456777777777776 88888888888776322      1357778888888887 688888888887765

...

>KOG0553|consensus

Probab=98.23  E-value=1e-05  Score=70.65  Aligned_cols=121  Identities=11%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ...|..+.+=|+-..+.++|.+|+..|.+|+++--      .=+..|-+-+.+|..++ ++.|++-++.|+.+-.     
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-----  146 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-----  146 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-----
Confidence            34455666667778888999999999999998732      22446677777888888 9999999999998632     


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT  235 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~  235 (325)
                       .-..+|.++|.+|..+|+|.+|++.|+++|++.+...      .+..+|..+-...++.
T Consensus       147 -~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne------~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  147 -HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE------SYKSNLKIAEQKLNEP  199 (304)
T ss_pred             -HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH------HHHHHHHHHHHHhcCC
Confidence             2357899999999999999999999999999865432      2334455554444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=4.5e-05  Score=59.88  Aligned_cols=94  Identities=22%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      ...+..+|..+...+ +++|+.++++++.+....      ...+..+|.++..+|++++|+.++++++.+.+.      .
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------D   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C
Confidence            355778888888776 999999999998865432      367889999999999999999999998886422      1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...++.+|.++...|++++|...|+++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            245678999999999999999999997

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.21  E-value=3.8e-05  Score=67.62  Aligned_cols=100  Identities=10%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        152 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       152 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      ..+|++|+..|++.+..++...   ....++..+|.+|...|+|++|+..|++++..++...   ....+++.+|.++..
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~dAl~klg~~~~~  229 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAADAMFKVGVIMQD  229 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhHHHHHHHHHHHH
Confidence            3449999999999999887653   3346788999999999999999999999998775432   234577889999999


Q ss_pred             cCCHHHHHHHHHhh-cccCCChHHHHH
Q psy10061        232 RGDTVAAEKAFKEW-GNCCEAPEVQTL  257 (325)
Q Consensus       232 ~gd~~~A~~~~~~~-~~~~~~~e~~~l  257 (325)
                      .|++++|...|++. ..|.++..+...
T Consensus       230 ~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        230 KGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            99999999999998 677666655433

>KOG4162|consensus

Probab=98.19  E-value=0.00011  Score=71.45  Aligned_cols=124  Identities=13%  Similarity=0.018  Sum_probs=65.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      ..++..+...+..++|..|..+|..++      ...+..|+..|..+...+ ..+|.+.|..|+.+-+..      ..+.
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~  721 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSM  721 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHH
Confidence            344555555555555555555554443      233445555555555555 666666666666553321      1344


Q ss_pred             HHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        183 SRAARMCVRVKEFDKAAD--LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+|.++.+.|+..-|..  ++..++.+-+      ....+|+.+|.++..+||..+|.++|+-+
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLDP------LNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            556666666665444444  5555554311      11235556666666666666666666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.19  E-value=1.9e-05  Score=72.88  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +...|......|++++|+.+|++|+.+...  +    ..++.++|.+|...+ +++|+..+++++.+....      ..+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN--N----AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence            344466667779999999999999875332  2    347889999999887 999999999999986532      457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      +..+|.+|..+|+|++|+..|++++.+..
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999998754

>KOG0550|consensus

Probab=98.18  E-value=0.00016  Score=65.75  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=86.3

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHH---------HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYS---------KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYH   98 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~---------~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~   98 (325)
                      .++.+.|+.+|++++++-        ++...+...+.         .=|+-..+.|+|.+|.++|..++.+-..  +...
T Consensus       216 ~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~  285 (486)
T KOG0550|consen  216 NDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKT  285 (486)
T ss_pred             ccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccch
Confidence            345667777777765543        33333333333         3356666778888888888888777655  3445


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      .+.+|.|.+.+..++|+..+|+.-.+.|+.|      -......|..-|.++...+ +++|++.|++|++.-..
T Consensus       286 naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  286 NAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6778888888888888888888888877766      3444566777777777776 88888888888765443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.16  E-value=3e-05  Score=55.80  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=59.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR  191 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  191 (325)
                      +|++++|+.+++++++....  ++  -...+..+|.+|...+ +++|+..+++ +.+-..      ...+...+|.++.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHH
Confidence            57899999999998877554  22  2335666899998888 9999999888 333221      13455567999999


Q ss_pred             cCCHHHHHHHHHHH
Q psy10061        192 VKEFDKAADLIRQE  205 (325)
Q Consensus       192 ~g~~~~A~~~~~~a  205 (325)
                      +|+|++|+++|+++
T Consensus        71 l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKYEEAIKALEKA   84 (84)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhcC
Confidence            99999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.15  E-value=1.2e-05  Score=55.39  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATL  129 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~  129 (325)
                      +..|...|.++...|++++|+.+|.+++++...      -+.++.++|.+|..+| ++.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            467788899999999999999999999987532      2558999999999999 799999999999875

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.14  E-value=8.9e-05  Score=57.11  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      .+..+.+.++-.+|+.++|+.+|++++..-  . +......++..+|..+...| +++|+..+++++.-+......   .
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~---~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN---A   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---H
Confidence            356778889999999999999999998631  1 23344568889999999998 999999999998766543221   2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      .....++.++...|++++|++.+-.++.
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2334578899999999999999877764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.11  E-value=4.2e-05  Score=67.34  Aligned_cols=106  Identities=9%  Similarity=0.034  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...|..+..++...|+|++|+..|...+..+...   ..+..++..+|.+|...|++++|+..|++++..|...   ...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cch
Confidence            4556666666566677777777777776666542   2334566677777777777777777777776655433   233


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      ..++.++|.++...+ +++|+..|++.++.++.
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            445666677766555 77777777776666654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.10  E-value=0.0041  Score=61.74  Aligned_cols=229  Identities=14%  Similarity=0.095  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK  111 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~  111 (325)
                      .-|.+++.+|-......     .+ ++-.+-|.++...         |+.|++-+.. -.++ .+...+.++.++|.++.
T Consensus         8 ~lAeey~~~A~~~~~~~-----~~-~~~l~~Y~kLI~~---------ai~CL~~~~~-~~~l-~p~~ea~~~l~la~iL~   70 (608)
T PF10345_consen    8 SLAEEYLEKAHSLATKV-----KS-EEQLKQYYKLIAT---------AIKCLEAVLK-QFKL-SPRQEARVRLRLASILL   70 (608)
T ss_pred             HHHHHHHHHhHHHHHhc-----CC-hhhHHHHHHHHHH---------HHHHHHHHhc-cCCC-CHHHHHHHHHHHHHHHH
Confidence            45667777776666541     22 3344445554433         4555554443 1122 56778889999998876


Q ss_pred             -HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHHH
Q psy10061        112 -ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARMC  189 (325)
Q Consensus       112 -~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l-g~~~  189 (325)
                       ...++++|..+.++++.+..+.+-.+---.+-.-++.++...++..|+....++++.++..+..... .++.-+ ..++
T Consensus        71 ~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~  149 (608)
T PF10345_consen   71 EETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLA  149 (608)
T ss_pred             HHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHH
Confidence             7789999999999999999886555545556667799999999555999999999999885443322 233333 2333


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc--C---CChHHHHHHHH
Q psy10061        190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC--C---EAPEVQTLEKL  260 (325)
Q Consensus       190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~--~---~~~e~~~l~~L  260 (325)
                      ...+++..|++.++.........+++.....+.+.-+.+++..+....+.+.++++    ..+  +   ....-.++..+
T Consensus       150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll  229 (608)
T PF10345_consen  150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL  229 (608)
T ss_pred             HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence            33489999999999999988877887776667777788888889888888888875    211  1   12233344444


Q ss_pred             HH---HHhcCCHHHHHHHhcC
Q psy10061        261 LQ---AFDEEDPEGARQALND  278 (325)
Q Consensus       261 ~~---a~~~gd~~~~~~~~~~  278 (325)
                      .+   .+..|++......++.
T Consensus       230 l~l~~~l~~~~~~~~~~~L~~  250 (608)
T PF10345_consen  230 LDLCCSLQQGDVKNSKQKLKQ  250 (608)
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            44   4468998888887765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.08  E-value=0.0025  Score=61.44  Aligned_cols=227  Identities=13%  Similarity=0.077  Sum_probs=132.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      -.|++++|++++.+..+..           -+-...++.-|.++..+|++++|...|...++......+      .|..+
T Consensus        16 e~g~~~~AL~~L~~~~~~I-----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~------Yy~~L   78 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQI-----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD------YYRGL   78 (517)
T ss_pred             HCCCHHHHHHHHHhhhhhC-----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------HHHHH
Confidence            3578999999998755433           233455667889999999999999999988766553321      22222


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHH--------------------------HHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061        107 IMMCKEL-----NDLTDVENLAKQAATL--------------------------FLEQGNREAASTVLEKGAKSLEELK-  154 (325)
Q Consensus       107 ~~~y~~~-----g~~~eA~~~~~~A~~~--------------------------~~~~g~~~~aa~~l~~lg~~~~~~~-  154 (325)
                      ..+....     .+...-...|++....                          |....-..++-..+.++-.+|.... 
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K  158 (517)
T PF12569_consen   79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK  158 (517)
T ss_pred             HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence            2222110     1223333344433222                          2111111112223444555555332 


Q ss_pred             ---HHHHHHHHHHHHHHHhc--------CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061        155 ---SDAALTLYSRAADVAHG--------EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV  223 (325)
Q Consensus       155 ---~~~A~~~y~~Al~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  223 (325)
                         ..+-+.-|...++....        ...+.....++.-++..|-..|++++|+++.+++|+.-+      .....|.
T Consensus       159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~  232 (517)
T PF12569_consen  159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYM  232 (517)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHH
Confidence               11222222222211111        112333456778899999999999999999999998532      2335778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHH-HHHHH-HhcCCHHHHHHHhcC
Q psy10061        224 ALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLE-KLLQA-FDEEDPEGARQALND  278 (325)
Q Consensus       224 ~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~-~L~~a-~~~gd~~~~~~~~~~  278 (325)
                      .-|.++-..||+.+|.+.++.+...+..+.  .++ ..... +..|+.+.+...+..
T Consensus       233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~  287 (517)
T PF12569_consen  233 TKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASL  287 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            899999999999999999999855543322  233 22333 367888888777653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156|consensus

Probab=98.07  E-value=0.00043  Score=66.26  Aligned_cols=194  Identities=10%  Similarity=0.123  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...|.++..+| ..++|...+......+.-+.+.|      ..+.-.|.....+|+-++|.++.+.++..  ..+    .
T Consensus         8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~----S   74 (700)
T KOG1156|consen    8 NALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLK----S   74 (700)
T ss_pred             HHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHHHHHhcc--Ccc----c
Confidence            44566666665 45666666666666555333333      34555677777889999998888887752  122    2


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      -.|++-+|.++.... |++|++||+.|+.+-..+      ..+++.++.+..++++|+.....=.+.+++.      ...
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~~  142 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PSQ  142 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hhh
Confidence            347888998888776 999999999998875433      3688888888888898888777766655542      223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc---CCChHHH----HHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNC---CEAPEVQ----TLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~---~~~~e~~----~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ...|...++.+...|++..|.+..+.+ ...   .+.....    ++.+.....+.|.++.+.+++..
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence            346677888888888888888888886 111   1111221    12222223467777777777654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.05  E-value=0.00011  Score=56.52  Aligned_cols=98  Identities=20%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      +..++|.++...| .++|+.+|+++++.-  .. ......++..+|..+..+|++++|+.++++++.-++.-..   ...
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAG--LS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence            5677888898888 999999999998742  11 2233468889999999999999999999998765432111   112


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ....++.++...|++++|.+.+-..
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3344778999999999999988875

>KOG0495|consensus

Probab=98.04  E-value=0.00044  Score=66.34  Aligned_cols=212  Identities=16%  Similarity=0.179  Sum_probs=123.4

Q ss_pred             hhhhhHHHHHHhhchhc---cccc------cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHH
Q psy10061          7 KEEGMEYVKSAEKHSLS---TMTS------DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQ   77 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~---~~~~------~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~   77 (325)
                      ++.++.|+++|......   ||..      -++.++|+.++.++++.+        ++|.   .+|...|.++...++.+
T Consensus       634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~---Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFH---KLWLMLGQIEEQMENIE  702 (913)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchH---HHHHHHhHHHHHHHHHH
Confidence            66778888888876653   5533      256777777777777766        3333   46777888888888888


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHH
Q psy10061         78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA--------------TLFLEQGNREAASTVL  143 (325)
Q Consensus        78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~--------------~~~~~~g~~~~aa~~l  143 (325)
                      .|.++|..........      .-.+..++.+-.+.|...+|...++++.              .+-...|+...+-...
T Consensus       703 ~aR~aY~~G~k~cP~~------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  703 MAREAYLQGTKKCPNS------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHhccccCCCC------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            8888887766544432      2234445555555555555555555542              2223344444433332


Q ss_pred             HHHHHHHhccC--HHHHHHHHH------HHHHHHhc-CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        144 EKGAKSLEELK--SDAALTLYS------RAADVAHG-EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       144 ~~lg~~~~~~~--~~~A~~~y~------~Al~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                      .+.-.=+...+  ..+||.+.-      ++++-.++ .+++    .++..+|.++....++++|.++|.+++.+.+..|+
T Consensus       777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp----hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD  852 (913)
T KOG0495|consen  777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP----HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD  852 (913)
T ss_pred             HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence            22222222222  333333221      11111111 1222    46778899999999999999999999998877776


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+.-      .-..++..|.-++=.+.|.++
T Consensus       853 ~wa~------fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  853 AWAW------FYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             HHHH------HHHHHHHhCCHHHHHHHHHHH
Confidence            5421      223445566555555666665

>KOG3617|consensus

Probab=98.02  E-value=0.0012  Score=65.07  Aligned_cols=114  Identities=18%  Similarity=0.134  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHH----------HHHHHhccC-HHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQA----ATLFLEQGNREAASTVLEK----------GAKSLEELK-SDAALTLYSR  164 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A----~~~~~~~g~~~~aa~~l~~----------lg~~~~~~~-~~~A~~~y~~  164 (325)
                      -..|.+-+.-....++...|+++|+++    .++.+-+.+..++.+.|.+          -|.+++..+ .|.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            345666666666668888999999885    4555555555555544433          466777777 9999999988


Q ss_pred             HHHHHhcC------CChhhH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcc
Q psy10061        165 AADVAHGE------DNYKQA---------AEYISRAARMCVRVKEFDKAADLIRQE------IGYHQESE  213 (325)
Q Consensus       165 Al~~~~~~------~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~  213 (325)
                      |-+.|...      |+...+         ..+...||..|-..|+..+|+..|.+|      |.++.+.+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            87766431      221111         123457899999999999999998875      44555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.02  E-value=0.00069  Score=68.67  Aligned_cols=148  Identities=11%  Similarity=0.100  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL--------  131 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~--------  131 (325)
                      .+.+.+++..|...++++++......+++....      ....|.-.|.+|...++++++.-.  .++.++.        
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            355668888999999999999988866555432      234555566677777777776555  4444433        


Q ss_pred             -----HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        132 -----EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       132 -----~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                           ..|++...-.++..+|.+|..++ +++|...|++++++-..      -+.+++++|..|... +.++|+.++.+|
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence                 33444444457888999999888 99999999999987632      257999999999999 999999999999


Q ss_pred             HHHHHHcccHHHHHHHH
Q psy10061        206 IGYHQESEHLLAIGRLA  222 (325)
Q Consensus       206 l~~~~~~~~~~~~~~~~  222 (325)
                      +..+-...++...-..|
T Consensus       176 V~~~i~~kq~~~~~e~W  192 (906)
T PRK14720        176 IYRFIKKKQYVGIEEIW  192 (906)
T ss_pred             HHHHHhhhcchHHHHHH
Confidence            98765544444433333

>KOG1464|consensus

Probab=98.00  E-value=0.0028  Score=54.97  Aligned_cols=241  Identities=12%  Similarity=0.098  Sum_probs=134.0

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA  106 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~  106 (325)
                      .+.++|+.-|.+...+-..     +++|.  -.+..+...++..+++|++-.+.|.+.+...+..  .++.  -.+.+.+
T Consensus        41 ~~p~~Al~sF~kVlelEgE-----KgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~I  111 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGE-----KGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSI  111 (440)
T ss_pred             cCHHHHHHHHHHHHhcccc-----cchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHH
Confidence            5788899989888776532     34443  3456677888889999999999998887665542  1111  1222222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C--C---hhhHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D--N---YKQAA  179 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~--~---~~~~~  179 (325)
                      -..-....+.+--.+.|+.-++..+...+..-=-..-.++|.+|...+ |..--+.+++.-...+.. |  +   -....
T Consensus       112 lDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL  191 (440)
T KOG1464|consen  112 LDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL  191 (440)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence            222222233344445566655555544332211223345666666554 433333332222222211 1  1   11222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--------------  245 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--------------  245 (325)
                      ++|----.+|..+++-.+--.+|++++.+-..+.++...+...-.-|..++..|++++|..-|-++              
T Consensus       192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt  271 (440)
T KOG1464|consen  192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT  271 (440)
T ss_pred             hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence            333333345666666666666667777666666666555555555566666667766665443331              


Q ss_pred             ------------------------cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        246 ------------------------GNCCEAPEVQTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       246 ------------------------~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                                              .-|.+..|--++.+|..+|..+|..+|+..++.
T Consensus       272 CLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~  328 (440)
T KOG1464|consen  272 CLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKS  328 (440)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence                                    011233466678899999999999999998875

>PLN02789 farnesyltranstransferase

Probab=98.00  E-value=0.00044  Score=62.74  Aligned_cols=166  Identities=10%  Similarity=0.060  Sum_probs=112.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLFL  131 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~~  131 (325)
                      .++|.++.++|..+   +...+.+++|+..+.+++.+....      ..++..-+.++..+| ++++++.++.+++....
T Consensus        33 ~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np  103 (320)
T PLN02789         33 TPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNP  103 (320)
T ss_pred             CHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence            45666666655553   456677788888888877665432      235666677777777 57999999999986633


Q ss_pred             HcCCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +.-      .++...+.++...+   +++++.++.+++++-.+.      ..++...+.++...|+|+++++++.++|++
T Consensus       104 kny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        104 KNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             cch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            222      24666676666554   378899999998765443      368899999999999999999999999987


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhc---CCH----HHHHHHHHhh
Q psy10061        209 HQESEHLLAIGRLAVALVLVQLAR---GDT----VAAEKAFKEW  245 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~lg~~~~~~---gd~----~~A~~~~~~~  245 (325)
                      -....      .+++..+.+....   |.+    +.++++..++
T Consensus       172 d~~N~------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a  209 (320)
T PLN02789        172 DVRNN------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA  209 (320)
T ss_pred             CCCch------hHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence            43322      2445555555444   333    4566666564

>KOG4162|consensus

Probab=98.00  E-value=0.00081  Score=65.57  Aligned_cols=166  Identities=13%  Similarity=0.033  Sum_probs=108.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      ..|...|.-..|...+++.........+   ....+.-.-.|+.+.+...++++|-.+++..+.... -.-....+.-+|
T Consensus       365 ls~saag~~s~Av~ll~~~~~~~~~ps~---~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~-~~l~~~~~l~lG  440 (799)
T KOG4162|consen  365 LSYSAAGSDSKAVNLLRESLKKSEQPSD---ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR-SHLKPRGYLFLG  440 (799)
T ss_pred             HHHHHhccchHHHHHHHhhcccccCCCc---chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh-hhhhhhHHHHHH
Confidence            3344444444444444444333322222   223333344556677889999999999999773322 234455677777


Q ss_pred             HHHhcc----C--------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        148 KSLEEL----K--------SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       148 ~~~~~~----~--------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ..|...    +        ..+++..+++|+++-..  |+    .+...++.-|..+++...|.++.++++++.+.    
T Consensus       441 i~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~--dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~----  510 (799)
T KOG4162|consen  441 IAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT--DP----LVIFYLALQYAEQRQLTSALDYAREALALNRG----  510 (799)
T ss_pred             HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC--Cc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC----
Confidence            777653    1        45666777777654333  22    46778999999999999999999999987332    


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC  248 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~  248 (325)
                       .....+.-++.|.-..+++..|+.....+ ..|
T Consensus       511 -~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~  543 (799)
T KOG4162|consen  511 -DSAKAWHLLALVLSAQKRLKEALDVVDAALEEF  543 (799)
T ss_pred             -ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence             12346677899999999999999998886 444

>KOG0543|consensus

Probab=97.99  E-value=0.00014  Score=66.08  Aligned_cols=108  Identities=12%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--H-------HHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR--E-------AASTVLEKGAKSLEELK-SDAALTLYSRAAD  167 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~-------~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~  167 (325)
                      .+|.....-|+.|.+.|+|..|...|++|+..+.-...+  .       --..++.|++.++..++ |.+|+.++.++|+
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            344555566778888888888888888888776532111  1       11235667777777776 7777777777776


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      +-..+      ..++.+-|.++..+|+|+.|+..|++++.+.+.
T Consensus       286 ~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  286 LDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             cCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            54332      356777777777777777777777777776443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.95  E-value=0.019  Score=57.13  Aligned_cols=235  Identities=14%  Similarity=0.072  Sum_probs=152.5

Q ss_pred             hhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10061          8 EEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWK-PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA   86 (325)
Q Consensus         8 ~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~-~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a   86 (325)
                      +=|++++.+|-...... ...+..++=-++...|.+++...+-.++ +...+|.-.++-+..++....+++.|..++.++
T Consensus         8 ~lAeey~~~A~~~~~~~-~~~~~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~   86 (608)
T PF10345_consen    8 SLAEEYLEKAHSLATKV-KSEEQLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKA   86 (608)
T ss_pred             HHHHHHHHHhHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34667777777766655 2222334444444455555543221233 334455554544455566999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhc-cCHHHHHHHHHH
Q psy10061         87 ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG-AKSLEE-LKSDAALTLYSR  164 (325)
Q Consensus        87 ~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l-g~~~~~-~~~~~A~~~y~~  164 (325)
                      ..+.++.+-...--.+..-++.+|.+.+... |....+++++.+...+...- ..++.-+ ...+.. .++..|++.++.
T Consensus        87 ~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~  164 (608)
T PF10345_consen   87 ILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW-YYAFRLLKIQLALQHKDYNAALENLQS  164 (608)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            9999874433333445555689999877655 99999999999888654321 1222222 222223 359999999999


Q ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--c----cHHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061        165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES--E----HLLAIGRLAVALVLVQLARGDTVAA  238 (325)
Q Consensus       165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~----~~~~~~~~~~~lg~~~~~~gd~~~A  238 (325)
                      ...+....+++....-+...-+.++...+..+++++..++++...+..  .    .+......+..-..+++..|++..+
T Consensus       165 ~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~  244 (608)
T PF10345_consen  165 IAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS  244 (608)
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999998778776665666667788888899999999999998777654  1    1112222333344566788998888


Q ss_pred             HHHHHhh
Q psy10061        239 EKAFKEW  245 (325)
Q Consensus       239 ~~~~~~~  245 (325)
                      ...+++.
T Consensus       245 ~~~L~~l  251 (608)
T PF10345_consen  245 KQKLKQL  251 (608)
T ss_pred             HHHHHHH
Confidence            8887763

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0624|consensus

Probab=97.95  E-value=0.0013  Score=58.81  Aligned_cols=192  Identities=10%  Similarity=0.062  Sum_probs=126.7

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      |++..++++..+-++..     -|      .+.+|+-=+.||...|....|+.-+..+..+....      ...+..++.
T Consensus       169 GD~~~ai~~i~~llEi~-----~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn------Te~~ykis~  231 (504)
T KOG0624|consen  169 GDCQNAIEMITHLLEIQ-----PW------DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN------TEGHYKISQ  231 (504)
T ss_pred             CchhhHHHHHHHHHhcC-----cc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc------hHHHHHHHH
Confidence            35666666665543322     12      23455555788889999999998888877766432      246778888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQ-------GNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~-------g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      ++...|+...++.-.++++.+-...       ....+....+.++-...+...+.++++.+++.+..-+..-  .-....
T Consensus       232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~--~ir~~~  309 (504)
T KOG0624|consen  232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET--MIRYNG  309 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc--ceeeee
Confidence            8888899888888877777542211       1122233334444444444447777777777765433321  122345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +..+..++..-|++.+|+..+.++|++-+.      -..++-..+.+|+...+|+.|+.-|+.+
T Consensus       310 ~r~~c~C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l~dE~YD~AI~dye~A  367 (504)
T KOG0624|consen  310 FRVLCTCYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYLGDEMYDDAIHDYEKA  367 (504)
T ss_pred             eheeeecccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            667778888999999999999999886322      2245667788899999999999999997

>KOG3060|consensus

Probab=97.94  E-value=0.0039  Score=53.52  Aligned_cols=200  Identities=13%  Similarity=0.028  Sum_probs=143.0

Q ss_pred             hhchhcccccc-ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh
Q psy10061         18 EKHSLSTMTSD-RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA   96 (325)
Q Consensus        18 e~~~~~~~~~~-~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~   96 (325)
                      +..++.|-.-+ .+.++-.++..+-+...+.+..  +   ++--..|++...+....|+.+.|..|+.+.-+-+..  .+
T Consensus        14 ~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~--g---~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~   86 (289)
T KOG3060|consen   14 RDQMRKWREETVRNSEEVVQLGSEVLNYSKSGAL--G---DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SK   86 (289)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHHhhhccc--C---chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--Ch
Confidence            33444564332 4678888888888777766421  2   445578899988888999999999998886555532  21


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                          ++..--|+.+.-.|++++|+++|+..++     .|+...+..-.+++.+-.....-+||+...+-++.|-.+    
T Consensus        87 ----RV~~lkam~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D----  153 (289)
T KOG3060|consen   87 ----RVGKLKAMLLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND----  153 (289)
T ss_pred             ----hHHHHHHHHHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc----
Confidence                2333346677788999999999987652     445555555678887766666779999999888888654    


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHhh
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG---DTVAAEKAFKEW  245 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---d~~~A~~~~~~~  245 (325)
                        .+++..++++|+..|+|.+|.=++++.+-+.+-      ...++..++.+++-+|   ++.-|.++|.++
T Consensus       154 --~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  154 --QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF------NPLYFQRLAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             --HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              378999999999999999999999998765321      2235556666666554   467788888887

>KOG1127|consensus

Probab=97.90  E-value=0.00033  Score=70.00  Aligned_cols=155  Identities=11%  Similarity=0.037  Sum_probs=96.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCHHH
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL--------------FLEQGNREA  138 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~--------------~~~~g~~~~  138 (325)
                      .++...|..+|.+++++-...      |.++.-+|.+|+..-+...|..+|++|.++              |-+..+.+.
T Consensus       471 rK~~~~al~ali~alrld~~~------apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~  544 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSL------APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE  544 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence            345667777777776655433      568888999999888888899999998654              222222222


Q ss_pred             HHHH----------------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061        139 ASTV----------------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL  201 (325)
Q Consensus       139 aa~~----------------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  201 (325)
                      +...                +...|.+|..-+ ...|+..++.|+...+..      ..++..+|.+|...|+|..|++.
T Consensus       545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKv  618 (1238)
T KOG1127|consen  545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKV  618 (1238)
T ss_pred             HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHh
Confidence            2221                112233333222 677777777776554332      35777788888888888888888


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        202 IRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       202 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.++..+-+.     .. ..-+..+.+....|.|..|...++..
T Consensus       619 F~kAs~LrP~-----s~-y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  619 FTKASLLRPL-----SK-YGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             hhhhHhcCcH-----hH-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8877664221     11 12234666677778888888888774

>KOG1127|consensus

Probab=97.87  E-value=0.00064  Score=68.02  Aligned_cols=109  Identities=12%  Similarity=-0.072  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      .|-.|.+.+++..|+..++.|+.+-      ..-.+++.-+|.+|...+ +..|++.+.+|..+-+..      ......
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~d------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk  635 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTD------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFK  635 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCC------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHH
Confidence            4555556666666666666665431      122347888999999998 999999999998764332      234567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR  232 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  232 (325)
                      .+.+.+..|+|.+|++.+...+..+..      .-.....++.+++..
T Consensus       636 ~A~~ecd~GkYkeald~l~~ii~~~s~------e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  636 EAVMECDNGKYKEALDALGLIIYAFSL------ERTGQNGLAESVIRD  677 (1238)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHH
Confidence            888889999999999999887765321      112345677777664

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.86  E-value=0.01  Score=53.99  Aligned_cols=233  Identities=15%  Similarity=0.120  Sum_probs=127.4

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      |+|.+|+.+..++.+.-           +.=.-+|-.++.+-...|+++.+-.++.++.+.-.   +..  -..+...+.
T Consensus        98 G~~~qAEkl~~rnae~~-----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~---~~~--l~v~ltrar  161 (400)
T COG3071          98 GDFQQAEKLLRRNAEHG-----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG---DDT--LAVELTRAR  161 (400)
T ss_pred             CcHHHHHHHHHHhhhcC-----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC---Cch--HHHHHHHHH
Confidence            35555555555543322           33345666677777788888888888777765521   111  112333344


Q ss_pred             HHHHcCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH----HHh
Q psy10061        109 MCKELNDLTDVENLAKQA--------------ATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAAD----VAH  170 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A--------------~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~----~~~  170 (325)
                      +....|+++.|..-..++              ..+|...|+....-..+-++...-.- +-.++..+=++|..    -..
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHh
Confidence            555556655555544443              33455555544433332222211100 02222222222221    111


Q ss_pred             cCCCh--------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------H---Hc--ccH----------
Q psy10061        171 GEDNY--------------KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH------Q---ES--EHL----------  215 (325)
Q Consensus       171 ~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~---~~--~~~----------  215 (325)
                      ..+..              .....+...++.-+.++|++++|.++.++++.-.      .   ..  +++          
T Consensus       241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHH
Confidence            11100              1112344566777889999999999988887532      1   10  111          


Q ss_pred             ----HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChh
Q psy10061        216 ----LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPF  280 (325)
Q Consensus       216 ----~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~  280 (325)
                          ...+..+..+|..|+..+.+.+|.++|+.+-.+..+.  ....-++.++ +.|++..+.+..+..+
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                0123467889999999999999999999874443332  2344568888 4999999988766533

>KOG0543|consensus

Probab=97.83  E-value=0.00036  Score=63.54  Aligned_cols=139  Identities=13%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--Ch-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SA-------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~-------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      ++.-...-|+.|.+.|+|..|...|.+++.....-.  +.       .--..++.|++.||.++++|.+|+.+..+++++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            444555558888899999999999999888776321  11       123468999999999999999999999999866


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q psy10061        130 FLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD-KAADLIRQEIG  207 (325)
Q Consensus       130 ~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~  207 (325)
                        ..++    ..+|.+-|.++...+ |+.|+..|++++++.+.+.      .+...|..+-.+..++. ...++|.+++.
T Consensus       287 --~~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 --DPNN----VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             --CCCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              2233    447899999999988 9999999999999987763      23344555544444443 33666666655


Q ss_pred             HH
Q psy10061        208 YH  209 (325)
Q Consensus       208 ~~  209 (325)
                      ..
T Consensus       355 k~  356 (397)
T KOG0543|consen  355 KL  356 (397)
T ss_pred             cc
Confidence            43

>KOG4555|consensus

Probab=97.80  E-value=0.0011  Score=51.01  Aligned_cols=96  Identities=22%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      .+..-|......+ .+.|++.|.+++.+..+.      +.+|++-+..+.-+|+.++|++-+.+++++...  ......+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacq  116 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQ  116 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHH
Confidence            3444455555555 888999999999887654      468889999999999999999999999887532  2344567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++...|.+|..+|+-+.|..-|+.+
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHH
Confidence            7888899999999999999999886

>KOG2300|consensus

Probab=97.75  E-value=0.037  Score=51.78  Aligned_cols=208  Identities=13%  Similarity=0.062  Sum_probs=138.9

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCC-HHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----hHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPD-YDSAA-----DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS----AYH   98 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~-~~~A~-----~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~----~~~   98 (325)
                      |-|+++.++-.++.+...+.-   ..+ .....     ...+....|-...|++.+|++....+.+.+.....    ...
T Consensus       289 gy~~~~~K~tDe~i~q~eklk---q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300|consen  289 GYFKKAQKYTDEAIKQTEKLK---QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence            457777777777776654420   111 11222     22334456667789999999999998888876643    233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC----
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN----  174 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~----  174 (325)
                      .+....-+|.-...-+-++.|...+..|...-.   ..+-.+-+-.+++.+|-..+-.+   -+.++++.....+.    
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---~~dl~a~~nlnlAi~YL~~~~~e---d~y~~ld~i~p~nt~s~s  439 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---SIDLQAFCNLNLAISYLRIGDAE---DLYKALDLIGPLNTNSLS  439 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---HHHHHHHHHHhHHHHHHHhccHH---HHHHHHHhcCCCCCCcch
Confidence            455555566555566778888888887765533   33445667778888888765222   23355555443322    


Q ss_pred             -hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        175 -YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       175 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                       ....+.++.-.|...+.++++.+|...+.+.+.+....+.....+-.+.-+|.+.+..||..++.+..+-+
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa  511 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA  511 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence             12335567778888899999999999999999987544444445566778999999999999998887764

>KOG1128|consensus

Probab=97.74  E-value=0.00035  Score=67.70  Aligned_cols=121  Identities=11%  Similarity=-0.060  Sum_probs=68.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      ..|.-.||.-.=-.+|++|.++.....     +.+...+|...... +|.++..+++.++++..-      ...++..+|
T Consensus       458 ~lyc~LGDv~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G  526 (777)
T KOG1128|consen  458 RLYCLLGDVLHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLG  526 (777)
T ss_pred             hhHHHhhhhccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhcc
Confidence            344444444444456666666654322     11222333333322 377777777777665432      234666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+..+.+++..|++.|.+.+.+.     + .....++|+...|+..|+-.+|...+.++
T Consensus       527 ~~ALqlek~q~av~aF~rcvtL~-----P-d~~eaWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  527 CAALQLEKEQAAVKAFHRCVTLE-----P-DNAEAWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcC-----C-CchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence            77777777777777776665542     1 12245667777777777777777777765

>KOG2376|consensus

Probab=97.73  E-value=0.0068  Score=57.74  Aligned_cols=67  Identities=18%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---cc------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES---EH------LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~------~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      -+.+.|.+-+++..|+|.+|++.+++++.++++.   ++      ......+...++-++..+|+..+|...|..+
T Consensus       175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~  250 (652)
T KOG2376|consen  175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI  250 (652)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3567789999999999999999999999988763   11      1234455677888888999999999988875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.73  E-value=0.00011  Score=49.92  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+|..+...|+|++|+..|++++...+      ....+++.+|.++..+|++++|...|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            578888999999999999988877532      13357788999999999999999998886

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.72  E-value=0.0013  Score=48.43  Aligned_cols=76  Identities=18%  Similarity=0.148  Sum_probs=59.8

Q ss_pred             HhccCHHHHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        150 LEELKSDAALTLYSRAADVAHGEDNYK---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       150 ~~~~~~~~A~~~y~~Al~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                      +...+|..|++.+.+..+.....+...   ....++.+++.++...|++++|+..+++++.+.++.++......++.-+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            334458888888888888877765533   4456788899999999999999999999999999999887766554433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.72  E-value=0.00013  Score=49.48  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      .+|..+...+ +++|+.+|++++....      ....++..+|.++..+|++++|+.+|++++.+.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567777776 9999999999886543      245788999999999999999999999998764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.71  E-value=0.018  Score=57.58  Aligned_cols=233  Identities=15%  Similarity=0.036  Sum_probs=153.6

Q ss_pred             cchhhhhhHHHHHHhhchhc------------c-------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHH
Q psy10061          4 DRKKEEGMEYVKSAEKHSLS------------T-------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYS   64 (325)
Q Consensus         4 ~~~~~~~~~~~~~ae~~~~~------------~-------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~   64 (325)
                      +=-+.++..+|.++++-++-            |       ....+++++|+++.+.++..+-.      .-|-.-+-++.
T Consensus       428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~------~~~~~r~~~~s  501 (894)
T COG2909         428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE------AAYRSRIVALS  501 (894)
T ss_pred             ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc------ccchhhhhhhh
Confidence            34467888999999988873            1       12236789999999998887754      33444566788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--C-CHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--G-NREAAST  141 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g-~~~~aa~  141 (325)
                      -++.++.-.|++++|..+...+.++.+..+.+.-...+...-+.+...+|+-.  ..-..++-...+..  + .+...-.
T Consensus       502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~--~a~~~~~~~~~~~q~l~q~~~~~f~  579 (894)
T COG2909         502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA--RAEQEKAFNLIREQHLEQKPRHEFL  579 (894)
T ss_pred             hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHhhhcccchhH
Confidence            88999999999999999999999999999999999999999999999999322  22222222211111  0 1111111


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHH
Q psy10061        142 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIG  219 (325)
Q Consensus       142 ~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~  219 (325)
                      ....+...+....++.+..-....+++-..... ......++..++.++...|++++|.....+...+..+.+ .....+
T Consensus       580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a  659 (894)
T COG2909         580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA  659 (894)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence            222333333333355555545555544333221 222223345899999999999999999998888776553 334455


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      .++..-....+.+||+..|.....+
T Consensus       660 ~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         660 AAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHhhHHHhcccCCHHHHHHHHHh
Confidence            5555455555678999999888887

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.71  E-value=0.001  Score=49.00  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETNKSAY---HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      ...|+|..|.+.+.+..+.....+...   ....+..+++.++...|++++|+..+++|+.+.++.+|....+.++.-+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~   88 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA   88 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            356788888888888888877665544   56677888999999999999999999999999999999988888777776


Q ss_pred             HHHh
Q psy10061        148 KSLE  151 (325)
Q Consensus       148 ~~~~  151 (325)
                      .+..
T Consensus        89 ~l~~   92 (94)
T PF12862_consen   89 NLLK   92 (94)
T ss_pred             HHhh
Confidence            6543

>KOG3785|consensus

Probab=97.70  E-value=0.0052  Score=55.21  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=70.0

Q ss_pred             ccchhhhhhHHHHHHhhchh--ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061          3 SDRKKEEGMEYVKSAEKHSL--STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCK   80 (325)
Q Consensus         3 ~~~~~~~~~~~~~~ae~~~~--~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~   80 (325)
                      |.|+.+-+..-+++|.|+-+  -|.+ ..+|+-|+.++.-....          +-++--+.-.=++.|+..+|+|++|+
T Consensus         9 ~~R~~~g~~~~~kkarK~P~Ledfls-~rDytGAislLefk~~~----------~~EEE~~~~lWia~C~fhLgdY~~Al   77 (557)
T KOG3785|consen    9 SSRKRNGAGPTIKKARKMPELEDFLS-NRDYTGAISLLEFKLNL----------DREEEDSLQLWIAHCYFHLGDYEEAL   77 (557)
T ss_pred             ccccccCCCCcchhhhcCchHHHHHh-cccchhHHHHHHHhhcc----------chhhhHHHHHHHHHHHHhhccHHHHH
Confidence            44666666666888888766  2433 34799999988754321          11222333345789999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA  126 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A  126 (325)
                      ..|..+..    -.+..  +....+++-++.-+|.|.+|...-.+|
T Consensus        78 ~~Y~~~~~----~~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   78 NVYTFLMN----KDDAP--AELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHhc----cCCCC--cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            99887654    11222  345667788888888887777665554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.65  E-value=0.0022  Score=59.68  Aligned_cols=123  Identities=13%  Similarity=0.073  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      +..++...+++++|+..+++....     +++    +...++.++...+ ..+|++.+.+++...+..      ...+.-
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~-----~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~  239 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER-----DPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNL  239 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc-----CCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence            344555667888888887775422     222    3345777777666 889999999999554432      578888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccC
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC  249 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~  249 (325)
                      .+..+...++|+.|+.+.++++.+.+.      .-..|..++.+|...||++.|+-.++.+|.+.
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            999999999999999999999987543      22467789999999999999999999876553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3616|consensus

Probab=97.63  E-value=0.0019  Score=62.84  Aligned_cols=65  Identities=20%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQ------AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA  165 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~------A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A  165 (325)
                      ...|..+|.+|.+..++++|++||++      |+++.+ ..-+......-..-|.-++..+ ++.|+.+|-+|
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea  732 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA  732 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence            45677777777777777777777765      333322 2233344444444455555444 66666655443

>KOG4555|consensus

Probab=97.63  E-value=0.0018  Score=49.96  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      ..++.-|....+.|+.+.|++.|.+++.+.-+.      +.+|++-+..+.-.+ .++|+.-+.+|+++....  .+.+.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtac  115 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTAC  115 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHH
Confidence            344445566667788888888888888875433      346888888887766 888888888888876543  45567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      .++..-|.+|..+|+-+.|..-|+.+..+
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            78899999999999999999999887664

>KOG3060|consensus

Probab=97.62  E-value=0.029  Score=48.31  Aligned_cols=126  Identities=9%  Similarity=0.059  Sum_probs=91.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      |..+...|++++|.++|...++     +|+...+.--..++ +...+|+.-+|++....-++.|.  +|.    .++..+
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlA-ilka~GK~l~aIk~ln~YL~~F~--~D~----EAW~eL  160 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLA-ILKAQGKNLEAIKELNEYLDKFM--NDQ----EAWHEL  160 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHhc--CcH----HHHHHH
Confidence            4566778888999988877542     33444443334444 44667888888888777776654  343    379999


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK---EFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~  210 (325)
                      +.+|...+ |.+|.-||++.+-+-+-.      ..++..+|.+++-+|   ++.-|.++|.+++.+..
T Consensus       161 aeiY~~~~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  161 AEIYLSEGDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999888 999999999998664432      246778888877665   77789999999999865

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.59  E-value=0.00021  Score=42.41  Aligned_cols=33  Identities=15%  Similarity=0.363  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      ++.+||.+|.++|+|++|+++|+++|.+..+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            477899999999999999999999988766543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.57  E-value=0.019  Score=47.54  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061        121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  199 (325)
                      +-++.-++-++...--......+..+|..|...| .+.|+++|.++.+.....   ....+.+.++..+.+..+++....
T Consensus        17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---~~~id~~l~~irv~i~~~d~~~v~   93 (177)
T PF10602_consen   17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP---GHKIDMCLNVIRVAIFFGDWSHVE   93 (177)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3444445555555555666677888888888777 888888888876654332   334567778888888889999999


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061        200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC  249 (325)
Q Consensus       200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~  249 (325)
                      .+..++-.+....++.....+....-|+.++..++|..|.+.|-+. +.|.
T Consensus        94 ~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen   94 KYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            9988888877776665555566667788888899999999999987 5553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=97.56  E-value=0.037  Score=48.78  Aligned_cols=121  Identities=12%  Similarity=0.010  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHcccHHHHHHHHHHHH
Q psy10061        158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG-----------YHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~lg  226 (325)
                      -..+..+|+...+..+...+-.+.+..+|..|.+-|++.+|..+|-..-.           .....+.+........+.+
T Consensus        69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV  148 (260)
T PF04190_consen   69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV  148 (260)
T ss_dssp             HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            44566677777744445556667888899999999999999888743211           1111233334455666778


Q ss_pred             HHHHhcCCHHHHHHHHHhh-cc---------------cCCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        227 LVQLARGDTVAAEKAFKEW-GN---------------CCEAPEVQTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~-~~---------------~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ..|+..++...|...+..+ ..               +....--.++.-|..+++.++.+.|...+++
T Consensus       149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~  216 (260)
T PF04190_consen  149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEK  216 (260)
T ss_dssp             HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            8899999999999988775 11               2334445677778889988999999998876

; PDB: 3LKU_E 2WPV_G.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.55  E-value=0.038  Score=50.37  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+..+|.++.+.+.|.+|-++|+.++..-.+.       ..+.-++.++..+|+...|.+.+++.
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-------~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-------SDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-------hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            578899999999999999999999888753222       34456889999999999999999986

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.51  E-value=0.0056  Score=50.66  Aligned_cols=127  Identities=11%  Similarity=0.049  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccCHHHH
Q psy10061         80 KEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELKSDAA  158 (325)
Q Consensus        80 ~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~~~~A  158 (325)
                      .+-+..-++-++...-......++..+|..|.+.|+.++|+++|.++.+.....|   .....+.++-.+ +...++...
T Consensus        16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~---~~id~~l~~irv~i~~~d~~~v   92 (177)
T PF10602_consen   16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG---HKIDMCLNVIRVAIFFGDWSHV   92 (177)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHHhCCHHHH
Confidence            3334444444555555677888999999999999999999999999776543333   333333444333 344458888


Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        159 LTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       159 ~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ..+..+|-.+....++.......-.--|..+...++|.+|...|-.++..+
T Consensus        93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            899999998888877766555555567777888899999999998877655

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1128|consensus

Probab=97.49  E-value=0.0027  Score=61.71  Aligned_cols=140  Identities=13%  Similarity=0.120  Sum_probs=90.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061        112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  190 (325)
Q Consensus       112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~  190 (325)
                      ..++|.++.++++.++++.      ......+..+|-+.-+.. +..|..+|..++.+-...      .+++++++..|+
T Consensus       497 ~~~~fs~~~~hle~sl~~n------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi  564 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEIN------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYI  564 (777)
T ss_pred             cchhHHHHHHHHHHHhhcC------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHH
Confidence            3456666666666665542      222335666666666554 788888888877654432      468888999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHhcCCH
Q psy10061        191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFDEEDP  269 (325)
Q Consensus       191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~~gd~  269 (325)
                      +.|+-.+|...+++++.-..   +   ....+.|--.+....|.+++|.+.+.+. ..-....+..++..+....-.+++
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~---~---~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~  638 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNY---Q---HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMT  638 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCC---C---CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhcc
Confidence            99999999888888877421   1   1135566777788888899998888886 211122245566666666544444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.49  E-value=0.019  Score=47.30  Aligned_cols=123  Identities=19%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  187 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~  187 (325)
                      ++...|++++|..++.+++..   ..........+...+..+...+ ++.++..+.+++......     ....+..++.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~  210 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGL  210 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhH
Confidence            555556666666666665221   1000111222222233233332 666666666665554432     1234555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+...+++.+|+..+..++...+.      ....+..++.++...+++..+...+.+.
T Consensus       211 ~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         211 LYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             HHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence            666666666666666655554322      1112233444444444555555555554

>KOG0495|consensus

Probab=97.47  E-value=0.01  Score=57.29  Aligned_cols=184  Identities=15%  Similarity=0.052  Sum_probs=121.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         69 CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK  148 (325)
Q Consensus        69 ~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~  148 (325)
                      -+...|+...|...+.++.+......+      ...-+..+-.+...+++|..++.+|-.   ..|    -.+++.+-+.
T Consensus       593 e~w~agdv~~ar~il~~af~~~pnsee------iwlaavKle~en~e~eraR~llakar~---~sg----TeRv~mKs~~  659 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEANPNSEE------IWLAAVKLEFENDELERARDLLAKARS---ISG----TERVWMKSAN  659 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhCCCcHH------HHHHHHHHhhccccHHHHHHHHHHHhc---cCC----cchhhHHHhH
Confidence            345667777777777776665544322      334445556666788888888888754   222    2446666666


Q ss_pred             HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061        149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL  227 (325)
Q Consensus       149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  227 (325)
                      +...++ .++|++++++++..|..-      -..+..+|.++.++++.+.|.+.|...+..++-.      .-.++.++.
T Consensus       660 ~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------ipLWllLak  727 (913)
T KOG0495|consen  660 LERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------IPLWLLLAK  727 (913)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------chHHHHHHH
Confidence            666565 899999999999888654      2578889999999999999999998887765432      124566777


Q ss_pred             HHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061        228 VQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQA-FDEEDPEGARQALND  278 (325)
Q Consensus       228 ~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~  278 (325)
                      +--..|...+|...|++...-.+-. ..+-...++. +..|..+.++..+.+
T Consensus       728 leEk~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7778888888988888871111111 1111122333 467777777777665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.47  E-value=0.00039  Score=41.27  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN  135 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~  135 (325)
                      ++.++|.+|..+|++++|+++|++++.+....++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            4677888888888888888888888877665543

>KOG1174|consensus

Probab=97.46  E-value=0.004  Score=56.95  Aligned_cols=152  Identities=9%  Similarity=0.045  Sum_probs=116.1

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI-  107 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~-  107 (325)
                      ++.++|.-.|+.|..+.           +--.++|+-+..+|...|.+.+|.-.-..+...+...      |+++.-+| 
T Consensus       348 ~R~~~A~IaFR~Aq~La-----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s------A~~LtL~g~  410 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLA-----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS------ARSLTLFGT  410 (564)
T ss_pred             cchHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc------hhhhhhhcc
Confidence            67888888888887665           2345789999999999999999988877777666543      45666665 


Q ss_pred             HHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        108 MMCKELN-DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       108 ~~y~~~g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      .++..-. -.++|-.++++++.+   .-++.++   -..++.++...+ +..++..+++++..+...       ...+.+
T Consensus       411 ~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~A---V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~L  477 (564)
T KOG1174|consen  411 LVLFPDPRMREKAKKFAEKSLKI---NPIYTPA---VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHL  477 (564)
T ss_pred             eeeccCchhHHHHHHHHHhhhcc---CCccHHH---HHHHHHHHHhhCccchHHHHHHHHHhhcccc-------HHHHHH
Confidence            4443322 345788888888754   3445444   456778888777 999999999999888653       467889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      |.++..++.+++|+++|..+|.+-+
T Consensus       478 gd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  478 GDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCc
Confidence            9999999999999999999998743

>KOG0624|consensus

Probab=97.42  E-value=0.061  Score=48.39  Aligned_cols=158  Identities=14%  Similarity=0.024  Sum_probs=106.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      +.+|...|...-|+.-+.+.+++-..      -..+..+-|.++.++|.+++|..-+.+.++--...|....   +..++
T Consensus        79 aT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e---aqskl  149 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE---AQSKL  149 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH---HHHHH
Confidence            56677777777777777666544321      2234566788999999999999999988754333332211   22222


Q ss_pred             HHH------------HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        147 AKS------------LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       147 g~~------------~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      +.+            +...+ +..++++....+++.      .+.+..+..-+.+|+..|+..+|+.-++.+-.+...  
T Consensus       150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--  221 (504)
T KOG0624|consen  150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--  221 (504)
T ss_pred             HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--
Confidence            222            22223 788888888877764      333556777888999999999999988777555322  


Q ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                        +  ...++.+..+++..||.+.++...+++
T Consensus       222 --n--Te~~ykis~L~Y~vgd~~~sL~~iREC  249 (504)
T KOG0624|consen  222 --N--TEGHYKISQLLYTVGDAENSLKEIREC  249 (504)
T ss_pred             --c--hHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence              1  135678889999999999999888887

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.39  E-value=0.00073  Score=46.84  Aligned_cols=54  Identities=7%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+|.+.++|++|+.++++++.+.+.      ....+...|.++..+|++.+|...|+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            46778888888888888888877433      2235567888888888888888888887

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.38  E-value=0.0043  Score=52.92  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc-------CCChhhHHHHHHH
Q psy10061        114 NDLTDVENLAKQAATLFLEQG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG-------EDNYKQAAEYISR  184 (325)
Q Consensus       114 g~~~eA~~~~~~A~~~~~~~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~-------~~~~~~~~~~~~~  184 (325)
                      ..+++|++.|.-|+-.+...+ +....|..+.+++-+|...+ .++...++++|++.|.+       .........++.-
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            345666666666665555433 45556666666666666554 34444444444444332       1122333456778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +|.++.+.|++++|+.+|.+.+..
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            999999999999999999988764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.37  E-value=0.12  Score=51.98  Aligned_cols=249  Identities=14%  Similarity=0.026  Sum_probs=157.7

Q ss_pred             cccc-cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy10061         24 TMTS-DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKH  102 (325)
Q Consensus        24 ~~~~-~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~  102 (325)
                      |..- ..++.+|..+..++...++...-  ...-+.-++.---.+.+-...|+++.|.+..+.++.-.... .+..-+.+
T Consensus       423 W~~~s~~r~~ea~~li~~l~~~l~~~~~--~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~~~  499 (894)
T COG2909         423 WLLASQHRLAEAETLIARLEHFLKAPMH--SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRIVA  499 (894)
T ss_pred             HHHHHccChHHHHHHHHHHHHHhCcCcc--cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhhhh
Confidence            5433 46899999999999988876211  01112222222233455667899999999999988766654 34455678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcC-CChhhH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK---SDAALTLYSRAADVAHGE-DNYKQA  178 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~---~~~A~~~y~~Al~~~~~~-~~~~~~  178 (325)
                      +..++.+..-.|++++|..+..++.++.+..+.+.-++.+...-+.++..+|   +.+...-+...-...... ......
T Consensus       500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~  579 (894)
T COG2909         500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL  579 (894)
T ss_pred             hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence            9999999999999999999999999999999999988888888899988887   444444443332222111 111111


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC---hH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA---PE  253 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~---~e  253 (325)
                      .-+...+...+.+   ++.+..-....+++-.... .+....-.+..++.+++..||+++|...+.+. .....+   -.
T Consensus       580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~  656 (894)
T COG2909         580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD  656 (894)
T ss_pred             HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence            2222233333332   7777776666666543322 22222223358999999999999999999996 221111   11


Q ss_pred             HHHHHHHHH-HH--hcCCHHHHHHHhcC
Q psy10061        254 VQTLEKLLQ-AF--DEEDPEGARQALND  278 (325)
Q Consensus       254 ~~~l~~L~~-a~--~~gd~~~~~~~~~~  278 (325)
                      +.....+.. .+  .+||...+..-+.+
T Consensus       657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         657 YLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            222222233 23  47888877776544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.0019  Score=56.12  Aligned_cols=107  Identities=7%  Similarity=-0.044  Sum_probs=80.7

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        143 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       143 l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      |...=..+...+|..|...|+.-++-|...   .....++.+||.+++.+|+|++|...|..++.-+++.   ...+..+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s---~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdal  218 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNS---TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDAL  218 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHH
Confidence            333333333334888888888888777664   3345788899999999999999999999887754433   2344678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061        223 VALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ  255 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~  255 (325)
                      +.+|.|...+|+.+.|...|++. ..|.+++-+.
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999998 6777665543

>KOG1156|consensus

Probab=97.37  E-value=0.022  Score=54.89  Aligned_cols=163  Identities=7%  Similarity=-0.040  Sum_probs=101.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE  144 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~  144 (325)
                      --|.....+|+.++|.++-..++..-.      ..-.|+.-+|.+++.-.+|++|+.||+.|+.+-..+-      ..+.
T Consensus        46 mkGL~L~~lg~~~ea~~~vr~glr~d~------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~------qilr  113 (700)
T KOG1156|consen   46 MKGLTLNCLGKKEEAYELVRLGLRNDL------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL------QILR  113 (700)
T ss_pred             hccchhhcccchHHHHHHHHHHhccCc------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH------HHHH
Confidence            345566678888999888877765222      2234788889999999999999999999987632221      2455


Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc--HHHHHHH
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH--LLAIGRL  221 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~  221 (325)
                      .++.+-.+.+ ++-....-.+-+++...      ....|...+..+...|+|..|....+.-........+  ......+
T Consensus       114 DlslLQ~QmRd~~~~~~tr~~LLql~~~------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~  187 (700)
T KOG1156|consen  114 DLSLLQIQMRDYEGYLETRNQLLQLRPS------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL  187 (700)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence            6665555444 44444443344433322      1235666777777778888887776665554432111  1223334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+--..++...|.++.|.+.+...
T Consensus       188 ~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  188 LLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhh
Confidence            445566677777777787777774

>KOG1070|consensus

Probab=97.36  E-value=0.078  Score=55.53  Aligned_cols=241  Identities=12%  Similarity=0.104  Sum_probs=164.5

Q ss_pred             chhhhhhHHHHHHhhchhc---cc------cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10061          5 RKKEEGMEYVKSAEKHSLS---TM------TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS   75 (325)
Q Consensus         5 ~~~~~~~~~~~~ae~~~~~---~~------~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~   75 (325)
                      |.|+-++++-+--...=++   |.      ..-+..++|.+..++|++...-      ..-++-...+.-..++-..-|.
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~------REeeEKLNiWiA~lNlEn~yG~ 1512 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF------REEEEKLNIWIAYLNLENAYGT 1512 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc------chhHHHHHHHHHHHhHHHhhCc
Confidence            5555566666666665553   42      1236789999999998876632      1113333333333333333455


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061         76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-  154 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-  154 (325)
                      -+.-.+.|++|.....       +-..|..+..+|.+.+.+++|.++++..++-++      +.-..+...+..+...+ 
T Consensus      1513 eesl~kVFeRAcqycd-------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCD-------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred             HHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccH
Confidence            5566667777665443       335888999999999999999999998876655      22346788888888887 


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      -+.|...+.+|+...+...    ..+.....+.+-++.|+.+.+..+|+..+..++.-.      ..|......-+..|+
T Consensus      1580 ~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt------DlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT------DLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch------hHHHHHHHHHHccCC
Confidence            7888899999999887732    246778899999999999999999998887664432      355666777888999


Q ss_pred             HHHHHHHHHhh-cccCCChHHHHHHHHHHHHh--cCCHHHHHH
Q psy10061        235 TVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD--EEDPEGARQ  274 (325)
Q Consensus       235 ~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~--~gd~~~~~~  274 (325)
                      ..-.+..|++. ..--.....+.+...--.|+  .||...++.
T Consensus      1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            99999999997 22223444555555444453  566655544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.36  E-value=0.001  Score=62.00  Aligned_cols=67  Identities=7%  Similarity=-0.062  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      .+.+.+.|.+|...|+|++|+.+|.+++++...   ...+..++.|+|.+|..+|++++|+.++++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456778899999999999999999999988653   2334467999999999999999999999999987

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.36  E-value=0.001  Score=61.89  Aligned_cols=68  Identities=13%  Similarity=-0.023  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV  168 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~  168 (325)
                      .-+.++.|+|.+|..+|++++|+.+|++|+++   .-+...+..++.++|.+|..++ +++|+.++++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45889999999999999999999999999877   2334444467899999998887 99999999999886

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.34  E-value=0.0045  Score=48.78  Aligned_cols=99  Identities=10%  Similarity=0.045  Sum_probs=69.3

Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        147 AKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       147 g~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      -..+...+|++|++.++....-+....   .+..+...++.+|.+.++|++|+..+++-+.+.+...+   ...+++..|
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~g   91 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRG   91 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHH
Confidence            333444458888888887766665432   23457778999999999999999999999988765432   345677889


Q ss_pred             HHHHhcCC---------------HHHHHHHHHhh-cccCCC
Q psy10061        227 LVQLARGD---------------TVAAEKAFKEW-GNCCEA  251 (325)
Q Consensus       227 ~~~~~~gd---------------~~~A~~~~~~~-~~~~~~  251 (325)
                      ++++.+.+               ...|...|++. ..|.+|
T Consensus        92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            88888765               55555555554 444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.31  E-value=0.03  Score=46.10  Aligned_cols=200  Identities=18%  Similarity=0.156  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...+...+..+...+++..+...+......    .........+...+.++...+++.+++..+.++.........    
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  130 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----  130 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----
Confidence            455667788888899999999988887765    123344667888888888888888888888888765443311    


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      ...+...+ ++...+ ++.|+..|.+++.....   .......+...+..+...++++.|+..+.+++......     .
T Consensus       131 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~  201 (291)
T COG0457         131 AEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----D  201 (291)
T ss_pred             HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----c
Confidence            11122222 555555 99999999999552221   11223455566666888999999999999998875442     2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ...+..++.++...+++..|...+... .....  .......+...+ ..++.+.+...+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEK  261 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence            345678899999999999999999997 22222  122233333333 34445555554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.25  E-value=0.0015  Score=58.60  Aligned_cols=26  Identities=12%  Similarity=0.385  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEI  206 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al  206 (325)
                      +++.++.+++.+|+|++|.+.+++++
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34444444444555555544444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.25  E-value=0.00085  Score=45.79  Aligned_cols=50  Identities=16%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +..|+|++|+.+|++++...+..      ..+.+.++.||+..|++++|...+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46677778888777777654321      134456777788888888887777776

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.23  E-value=0.0081  Score=58.19  Aligned_cols=143  Identities=11%  Similarity=-0.004  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q psy10061         54 PDYDSAADDYSKAATCFK--GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT----DVENLAKQAA  127 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~--~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~----eA~~~~~~A~  127 (325)
                      +.-..|-++|.++-....  ..++...|..+|++|+++-...      +.++..++.+|.....+.    ..+.....++
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            344566777777643322  1233667788888877665543      233333344443221111    1111111111


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        128 TLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       128 ~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      ...... .+... ...+.-+|.+....+ +++|...+++|+++-.      . ..++..+|.++...|++++|++.|++|
T Consensus       408 ~~a~al~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        408 DNIVALPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHhhhcccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            111111 11111 244555566655555 8888888888877652      1 346777888888888888888888888


Q ss_pred             HHHHH
Q psy10061        206 IGYHQ  210 (325)
Q Consensus       206 l~~~~  210 (325)
                      +.+.+
T Consensus       480 ~~L~P  484 (517)
T PRK10153        480 FNLRP  484 (517)
T ss_pred             HhcCC
Confidence            77643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.20  E-value=0.0088  Score=55.71  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      ..++...++++.|++.+.+.....     +.    +..-++.++...++..+|+....+++......      +..+..-
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q  240 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ  240 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            455667788888888887743222     22    34457888888899999999999998332211      5567777


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      +..+...+ ++.|+++.++|.++....      ..+|..|+.+|+.+|+|++|+-.+.
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            77777766 999999999999887653      4688999999999999999997664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.05  Score=45.08  Aligned_cols=116  Identities=19%  Similarity=0.050  Sum_probs=73.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        131 LEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       131 ~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ...|...-+......++..+...+ +++|+..++.++..-.+   ...-.-+-.+|+.+..++|++++|+..+...-   
T Consensus        80 ~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---  153 (207)
T COG2976          80 QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---ENLKALAALRLARVQLQQKKADAALKTLDTIK---  153 (207)
T ss_pred             hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---
Confidence            344344444444455566655554 88888888888754332   12223345688899999999998888765322   


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHH
Q psy10061        210 QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQT  256 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~  256 (325)
                          .....+......|.+++..||-.+|+..|+++ ..+.+....++
T Consensus       154 ----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~  197 (207)
T COG2976         154 ----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI  197 (207)
T ss_pred             ----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence                22334445566889999999999999999987 44433333333

>KOG4340|consensus

Probab=97.16  E-value=0.003  Score=55.47  Aligned_cols=62  Identities=15%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+.+..+.|-+..+.|+|+.|++-|+.++...   |-...   .-++++++++..|++..|+++-.+.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqpl---lAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQPL---LAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhc---CCCch---hHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            35678899999999999999999999998752   22222   3367999999999999999998874

>KOG2300|consensus

Probab=97.15  E-value=0.11  Score=48.78  Aligned_cols=204  Identities=11%  Similarity=0.050  Sum_probs=134.5

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCC--HH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPD--YD--SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~--~~--~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      +++.+|++-...+.+...+.     +.  ..  ..+....-+|.....-+-++.|...|..|.....+.   .-.+-+-.
T Consensus       337 ~~~~~al~~i~dm~~w~~r~-----p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---dl~a~~nl  408 (629)
T KOG2300|consen  337 GDYVEALEEIVDMKNWCTRF-----PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---DLQAFCNL  408 (629)
T ss_pred             CCHHHHHHHHHHHHHHHHhC-----CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH---HHHHHHHH
Confidence            68888988888887766541     11  11  223333344544555667788888888777665543   34677778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGN-----REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-----~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      |++.+|.+.++-.   + +.++++...-...     ....+..+.--|...... ++.+|....++.+++....+..+-.
T Consensus       409 nlAi~YL~~~~~e---d-~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~  484 (629)
T KOG2300|consen  409 NLAISYLRIGDAE---D-LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT  484 (629)
T ss_pred             hHHHHHHHhccHH---H-HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence            8999999977643   2 3344444333211     112222333334433334 4999999999999998666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD--TVAAEKAFKE  244 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd--~~~A~~~~~~  244 (325)
                      +-.+.-+|.+....|+..++....+-++.+..++.+....-+...-+-.+|...|+  .....+.|..
T Consensus       485 a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  485 ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            66778899999999999999999999999999887755444444445567777777  5555555554

>KOG4234|consensus

Probab=97.14  E-value=0.007  Score=50.24  Aligned_cols=105  Identities=13%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +-...=|+-+...|+|.+|..-|..|+++...+. ....+.+|.|-+-+..+++.+..|++-..+|+++.-.   +.   
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---y~---  168 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---YE---  168 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch---hH---
Confidence            3344457777788888888888888888887664 3566778888899999999999999999999887443   22   


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      .++.+-+..|+... |+.|++-|.+.+++....
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            24567788888887 999999999988876543

>KOG3616|consensus

Probab=97.13  E-value=0.017  Score=56.51  Aligned_cols=184  Identities=19%  Similarity=0.123  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH----------
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLK------AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAK----------  124 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~------a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~----------  124 (325)
                      ++|.++|.+|.+..++++|++||.+      ++++.+- .-+......-..-|.-....|+++-|+.+|-          
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            5677777777777777777777654      3333331 1222222222223333333444444444333          


Q ss_pred             ---------HHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH------HHHHHHhcCCChhhH----------
Q psy10061        125 ---------QAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS------RAADVAHGEDNYKQA----------  178 (325)
Q Consensus       125 ---------~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------~Al~~~~~~~~~~~~----------  178 (325)
                               +|+.|.....|...+...|..++.-|...+ ++-|.++|.      .|+.+|.+.+....+          
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~  820 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP  820 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence                     233333334444444444555555555554 655555553      345555554433221          


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcc------------cHHHHHHHHHHHHHHHHhcCCHHH
Q psy10061        179 ---AEYISRAARMCVRVKEFDKAADLI------RQEIGYHQESE------------HLLAIGRLAVALVLVQLARGDTVA  237 (325)
Q Consensus       179 ---~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~------------~~~~~~~~~~~lg~~~~~~gd~~~  237 (325)
                         ...|..-+.-+-+.|+|.+|..+|      .+++.++.+.+            ........+..++.-+-..||...
T Consensus       821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka  900 (1636)
T KOG3616|consen  821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA  900 (1636)
T ss_pred             hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence               122222233333445554444433      22333332222            112234456677888888888888


Q ss_pred             HHHHHHhh
Q psy10061        238 AEKAFKEW  245 (325)
Q Consensus       238 A~~~~~~~  245 (325)
                      |.+.|-++
T Consensus       901 ae~~flea  908 (1636)
T KOG3616|consen  901 AEEHFLEA  908 (1636)
T ss_pred             HHHHHHhh
Confidence            88887764

>PRK15331 chaperone protein SicA; Provisional

Probab=97.13  E-value=0.039  Score=44.61  Aligned_cols=93  Identities=20%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~-~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ......|--+. ..++++|...|+-..-+ .- .+    .+.+..||.++..+++|++|+..|-.+..+..  +++.   
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~-~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~---  106 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIY-DF-YN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYR---  106 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc-Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCC---
Confidence            33334443333 33488888888654432 11 11    24567899999999999999999988877543  3332   


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                       ..+..|.||+..|+...|..+|+.+
T Consensus       107 -p~f~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        107 -PVFFTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             -ccchHHHHHHHhCCHHHHHHHHHHH
Confidence             2356899999999999999999997

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.12  E-value=0.022  Score=55.05  Aligned_cols=134  Identities=13%  Similarity=0.057  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~  174 (325)
                      +.....++.-++..|...|++++|+++.++|++.      .+.....|..-|.++...| +.+|.+++..|-.+-..+  
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--  261 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--  261 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--
Confidence            3344678889999999999999999999999876      4555678888999999887 999999988886654332  


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-----c--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-----H--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +    .+-..++..+.+.|+.++|...+..    +...+     +  ...-.++....|.+|+..|++..|+..|...
T Consensus       262 R----yiNsK~aKy~LRa~~~e~A~~~~~~----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  262 R----YINSKCAKYLLRAGRIEEAEKTASL----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             H----HHHHHHHHHHHHCCCHHHHHHHHHh----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            1    2445677888899999999877543    32222     1  1123456678899999999999998888774

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340|consensus

Probab=97.12  E-value=0.084  Score=46.66  Aligned_cols=100  Identities=14%  Similarity=0.006  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HH---
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH----QE---  211 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~---  211 (325)
                      +....+.|-+..+.+ ++.|++-++.|++...-   .+.   .-.+++.++.+.|+|+.|+++..+.++--    ++   
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy---qpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY---QPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCC---Cch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            334555666655555 99999999999876432   222   33489999999999999999987766531    11   


Q ss_pred             -----------cccH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        212 -----------SEHL-----LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       212 -----------~~~~-----~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                                 ++++     .....+++--..+++..|+++.|.+.+-..
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm  267 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM  267 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence                       2221     123344555567788889999999888774

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.10  E-value=0.019  Score=55.75  Aligned_cols=114  Identities=15%  Similarity=-0.012  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---C------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---K------SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---~------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      ++.+|+.++++|+++--..      +.++..++.+|...   +      ...+....++++.+-.   +... ..++.-+
T Consensus       357 ~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~---~~~~-~~~~~al  426 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE---LNVL-PRIYEIL  426 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc---CcCC-hHHHHHH
Confidence            3678899999998763222      22233333333221   1      2344444444333311   1111 3567778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.++...|++++|...+++++++.+     .  ..+|..+|.++...|++++|.+.|+++
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~p-----s--~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLEM-----S--WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC-----C--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888899999999999999998742     2  246788999999999999999999997

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.07  E-value=0.0047  Score=53.71  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      ..|+.|...| ..|+|..|...|..-+.-|..   -.-+..++.=+|+++..+|++++|...|..+..   ..++..++.
T Consensus       143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KAp  215 (262)
T COG1729         143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAP  215 (262)
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCCh
Confidence            3666666655 566699999998887776653   334567888899999999999999988887754   556666777


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      ..+.++|.+...++ .++|...|++.+.-|...
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            78888888888776 888888888888777654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.05  E-value=0.0011  Score=38.59  Aligned_cols=30  Identities=7%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      .++.++|.+|..+|++++|+..|++++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            577889999999999999999999988864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.04  E-value=0.19  Score=43.90  Aligned_cols=88  Identities=15%  Similarity=0.099  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      ....+.++.+|.+.|...+..+....+...+|..|...|+|++|+++|+.+...+++-+=......++..+..|+...||
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            56778999999999999888888888889999999999999999999999998898877666667788889999999999


Q ss_pred             HHHHHHHH
Q psy10061        235 TVAAEKAF  242 (325)
Q Consensus       235 ~~~A~~~~  242 (325)
                      .+..+...
T Consensus       234 ~~~~l~~~  241 (247)
T PF11817_consen  234 VEDYLTTS  241 (247)
T ss_pred             HHHHHHHH
Confidence            88776654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.03  E-value=0.0027  Score=43.91  Aligned_cols=58  Identities=14%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..+|...+ +++|++++++++.+.+..      ...+...|.++..+|++++|+..|+++++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            34566555 999999999999886652      35788899999999999999999999997654

>KOG2047|consensus

Probab=97.02  E-value=0.039  Score=53.34  Aligned_cols=221  Identities=13%  Similarity=0.101  Sum_probs=145.6

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      ++..+-++-|.+|.+.....     .-...-..++...+.+|...|+.+.|...|+++...--+.  ....+.++.+=|+
T Consensus       361 ~~~~~~i~tyteAv~~vdP~-----ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~--v~dLa~vw~~wae  433 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKTVDPK-----KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT--VEDLAEVWCAWAE  433 (835)
T ss_pred             CChHHHHHHHHHHHHccCcc-----cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc--hHHHHHHHHHHHH
Confidence            57888888999988777652     2233345788889999999999999999999998765433  3456778888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHH------HHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLE------QGNREAASTVLEKG------AKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~------~g~~~~aa~~l~~l------g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      .-.+..+++.|..+.+.|..+=..      .|...-++..++.+      +.+-+..+ ++.-...|.+.+++--..   
T Consensus       434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT---  510 (835)
T KOG2047|consen  434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT---  510 (835)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---
Confidence            888888999999999988643111      12223334444433      33333345 555566666666653221   


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                         ..+..|.|.++-...-++++.+.|++.+.++.=-+-+. .-..|+.-..-.+.--..+.|.+.|+++ +.+ +..-+
T Consensus       511 ---Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d-iW~tYLtkfi~rygg~klEraRdLFEqaL~~C-pp~~a  585 (835)
T KOG2047|consen  511 ---PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD-IWNTYLTKFIKRYGGTKLERARDLFEQALDGC-PPEHA  585 (835)
T ss_pred             ---HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHH
Confidence               34566888888888899999999999998875332221 1122232333344445689999999998 533 35556


Q ss_pred             HHHHHHHHHH
Q psy10061        255 QTLEKLLQAF  264 (325)
Q Consensus       255 ~~l~~L~~a~  264 (325)
                      +.+.-|..-+
T Consensus       586 KtiyLlYA~l  595 (835)
T KOG2047|consen  586 KTIYLLYAKL  595 (835)
T ss_pred             HHHHHHHHHH
Confidence            6665554444

>KOG4234|consensus

Probab=97.02  E-value=0.0094  Score=49.51  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+-.=|+-+...|+|.+|..-|..|++++...-. ....-+|.+-|..+..++ .+.|+.-+.+|+++....      
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------  167 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------  167 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------
Confidence            344445567777788899999999999888776654 344455666666777776 888888888888875532      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..++.+-+.+|-++.+|++|++-|.+.+++.+
T Consensus       168 ~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            24666778888888888888888888877643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.02  E-value=0.016  Score=49.40  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHH
Q psy10061         75 SFQQCKEYLLKAANCYETNK-SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-------GNREAASTVLEKG  146 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------g~~~~aa~~l~~l  146 (325)
                      .+++|+..|.-|+-++...+ ++...|..+.+++-+|+.+|+.+....++++|++.|.+.       ........++..+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            45666666666666665443 566788899999999999999888888889998887764       2234556788899


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      |.+....+ +++|++++.+.+..-...
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            99999988 999999999988654433

>KOG2581|consensus

Probab=97.01  E-value=0.16  Score=46.62  Aligned_cols=212  Identities=14%  Similarity=0.092  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHH-H-HhcCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         59 AADDYSKAATC-F-KGAKSFQQCKEYLLKAANCYETNKSA----YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        59 A~~~y~~a~~~-y-~~~g~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      -+++|-.+..+ | +..+.+.+|..+-...+.-.. .++.    .-++.+|.=+..+|...|+...-...+..-+....-
T Consensus       123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL  201 (493)
T KOG2581|consen  123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL  201 (493)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence            35666665443 3 345777777776554433222 2222    236778888888888888876666665555555444


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..|..+.+...+.+-..|...+ |++|-..-.++.  +.........+..+.-+|.+..-+++|..|.+++.+++...++
T Consensus       202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            5578888888888888887777 898888776653  3333333344567788999999999999999999999988775


Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHH-HHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEV-QTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~-~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ...-........-+.++-+-+|++++=.-+-+.     +.+.+ ..--.|..|+..||...|.+.+.+
T Consensus       280 ~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp-----~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq  342 (493)
T KOG2581|consen  280 HAALGFRQQVNKLMIVVELLLGEIPERSVFRQP-----GMRKSLRPYFKLTQAVRLGDLKKFNETLEQ  342 (493)
T ss_pred             hhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            332222222333355666777876643211111     11111 122356777778888887777654

>KOG2376|consensus

Probab=97.00  E-value=0.36  Score=46.43  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHH-------HH----HHHHHhcCCHHHHHHHHHHHHHHHHhcC-------------------------ChH
Q psy10061         54 PDYDSAADDYS-------KA----ATCFKGAKSFQQCKEYLLKAANCYETNK-------------------------SAY   97 (325)
Q Consensus        54 ~~~~~A~~~y~-------~a----~~~y~~~g~~~~A~~~~~~a~~~~~~~~-------------------------~~~   97 (325)
                      +..++|..+++       ++    +.+++.+++|++|.+.|+..+.-....-                         .+.
T Consensus        93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e  172 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE  172 (652)
T ss_pred             ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence            56677777776       33    3456677888888888777633211100                         011


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCH------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ---GNR------EAASTVLEKGAKSLEELK-SDAALTLYSRAAD  167 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~---g~~------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~  167 (325)
                      ..-..+.|.+-++...|+|.+|++.+++|+.+.++.   +|.      ......-..++-+++..| ..+|...|...+.
T Consensus       173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK  252 (652)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            123455666777788888888888888888777653   222      233344556777777777 8888888877655


Q ss_pred             H
Q psy10061        168 V  168 (325)
Q Consensus       168 ~  168 (325)
                      .
T Consensus       253 ~  253 (652)
T KOG2376|consen  253 R  253 (652)
T ss_pred             h
Confidence            3

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.94  E-value=0.041  Score=51.51  Aligned_cols=119  Identities=14%  Similarity=0.027  Sum_probs=74.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      ..+...|++++|...++..+   ... +++    ..+.-.+.++...+ .++|++.+++++.+....      .-...++
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~---~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~  380 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLI---AAQPDNP----YYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNL  380 (484)
T ss_pred             HHHHHhcccchHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence            33444466666666665522   222 332    24555677777766 888888888888776543      2355678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.+|.+.|++.+|+..+++.+.-.++  +    +..|.-++.+|-.+|+..+|...+-+.
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~--d----p~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPE--D----PNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCC--C----chHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            88888888888888887766542111  1    123455677777777777776666665

>KOG2041|consensus

Probab=96.94  E-value=0.054  Score=52.91  Aligned_cols=80  Identities=10%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         54 PDYDSAADDYSK------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA  127 (325)
Q Consensus        54 ~~~~~A~~~y~~------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~  127 (325)
                      +.+++|-..|-.      |..++..+|+|-...+.++...    .-.+..+.-.+++++|..+..+-.+.+|.++|.+. 
T Consensus       748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~-  822 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC-  822 (1189)
T ss_pred             cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            566666666643      3455666666654443332210    12345667789999999999888888888877654 


Q ss_pred             HHHHHcCCHHHHHHHHH
Q psy10061        128 TLFLEQGNREAASTVLE  144 (325)
Q Consensus       128 ~~~~~~g~~~~aa~~l~  144 (325)
                            |+....+.+|.
T Consensus       823 ------~~~e~~~ecly  833 (1189)
T KOG2041|consen  823 ------GDTENQIECLY  833 (1189)
T ss_pred             ------cchHhHHHHHH
Confidence                  44444444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.94  E-value=0.09  Score=39.95  Aligned_cols=113  Identities=12%  Similarity=-0.023  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcC-----CHHH-HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061         99 AAKHLEQAIMMCK--ELNDLTDVENLAKQAATLFLEQG-----NREA-ASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus        99 aa~~~~~~~~~y~--~~g~~~eA~~~~~~A~~~~~~~g-----~~~~-aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      .+.+|..++..-.  .-|-|.+|..-+++|+++.+.+-     |+.+ -+-++.-|+..+..++ |++++..-.++|..|
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3444544443322  23567777777777777665542     1111 1335555666666666 777777777777666


Q ss_pred             hcCCCh-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        170 HGEDNY-----KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       170 ~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      .+.|..     ..-+.+..+-+..+..+|+.++|+..|+.+-++..+
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            554321     111234456666777788888888888888876544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.92  E-value=0.0016  Score=37.62  Aligned_cols=30  Identities=7%  Similarity=0.181  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      +++..+|.+|..+|++++|+.+|++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            567889999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.89  E-value=0.098  Score=39.75  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcC-----Ch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFK--GAKSFQQCKEYLLKAANCYETNK-----SA-YHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        58 ~A~~~y~~a~~~y~--~~g~~~~A~~~~~~a~~~~~~~~-----~~-~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      +.+..|.-+...-+  .-|.|++|...+.+|.++.+.+.     |+ .--+-++..++..+..+|+|++++..-.+++..
T Consensus         5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            44556666655443  45789999999999999998774     22 234678888999999999999999999999999


Q ss_pred             HHHcCCHHHH-----HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        130 FLEQGNREAA-----STVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       130 ~~~~g~~~~a-----a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      +...|...+-     +.+..+-+..++..+ .++|+..|+.+.++..+.
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9877653211     223344566677777 999999999999876543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.88  E-value=0.081  Score=43.64  Aligned_cols=127  Identities=13%  Similarity=0.039  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ....+++...++|++.||..+|++++.     |-+..-...+..++......+ +..|...+++..+.-.....+    .
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d  161 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----D  161 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----C
Confidence            445566777777888888888887753     333222334555555555554 777777776665544332222    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      ...-+|.+|..+|++.+|...|+.++.-++.     ..+.++  .+..+.++|+..+|...+..
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~--Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAISYYPG-----PQARIY--YAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHH--HHHHHHHhcchhHHHHHHHH
Confidence            3445777778888888888877777765422     222332  35566667766666555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.87  E-value=0.0031  Score=36.54  Aligned_cols=30  Identities=17%  Similarity=0.068  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      +.++.++|.+|..+|++++|+.+|++|+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            356777777777777888888877777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648|consensus

Probab=96.86  E-value=0.0025  Score=56.91  Aligned_cols=94  Identities=10%  Similarity=0.045  Sum_probs=64.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE  144 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~  144 (325)
                      .=|+-|.++|.|++|++||.+++.++...      ...+.|-+..|.++.+|..|..-+..|+.+-+.      -..+|.
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYS  169 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYS  169 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHH
Confidence            33778889999999999999988777532      235677788888888888888888888766322      123455


Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHh
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAH  170 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~  170 (325)
                      +-+..-..++ ..+|-+-|+.+|++-.
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEP  196 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence            5555555444 5666666666665543

>KOG1463|consensus

Probab=96.85  E-value=0.33  Score=43.68  Aligned_cols=248  Identities=12%  Similarity=0.048  Sum_probs=158.9

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++++..+.+-....+.. .+......+--+.--+++.++...|+..+-.+.....-..+...+ ...++.....+.+
T Consensus        18 ~~~~~~~~il~~vl~~~~~~-~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-KakaaKlvR~Lvd   95 (411)
T KOG1463|consen   18 NQVEEAINILKSVLNKAQGA-SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKAAKLVRSLVD   95 (411)
T ss_pred             chhhhhHHHHHHHhhhhccc-cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence            45788888888876643220 000011112223444668888888988887776666555555554 3456667777766


Q ss_pred             HHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        109 MCKELN-DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       109 ~y~~~g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+.... ..+.-+......++...+.....---..-.++..+|...+ |.+|+......+.-+++.+|.....++..-=.
T Consensus        96 ~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llES  175 (411)
T KOG1463|consen   96 MFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLES  175 (411)
T ss_pred             HHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhh
Confidence            665543 4557788888888877766654433334445666666665 99999999888888888777666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH-HHHHHHHHH-
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE-VQTLEKLLQ-  262 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e-~~~l~~L~~-  262 (325)
                      -+|+...+..+|...+..|-.....+- .|..++..-+.-|..|....||..|..+|-++ ++|...+. .+++..|.- 
T Consensus       176 K~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYM  255 (411)
T KOG1463|consen  176 KAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYM  255 (411)
T ss_pred             HHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHH
Confidence            778888888888887777665544432 34556666667788888888999999998887 67753333 233333211 


Q ss_pred             ---HHhcCCHHHHHHHhcC
Q psy10061        263 ---AFDEEDPEGARQALND  278 (325)
Q Consensus       263 ---a~~~gd~~~~~~~~~~  278 (325)
                         -+..+.++.....+..
T Consensus       256 lLcKIMln~~ddv~~lls~  274 (411)
T KOG1463|consen  256 LLCKIMLNLPDDVAALLSA  274 (411)
T ss_pred             HHHHHHhcCHHHHHHHHhh
Confidence               1235666666665554

>KOG1464|consensus

Probab=96.84  E-value=0.045  Score=47.68  Aligned_cols=201  Identities=14%  Similarity=0.107  Sum_probs=122.6

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      +.-++|++-++.|++-+++.+..+.   .+|.+-  +-+.+...-....+.+--..+|+.-++..+...+.+-.-..-..
T Consensus        76 f~l~~~~eMm~~Y~qlLTYIkSAVT---rNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK  150 (440)
T KOG1464|consen   76 FRLGNYKEMMERYKQLLTYIKSAVT---RNYSEK--SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK  150 (440)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHh---ccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence            3346899999999999988876442   344331  22222222234445555667777777777766554444455677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQ-GN-----REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g~-----~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +|.+|...+.|.+-....++.-.-+... |.     ..+....|..--.+|.... ...--..|++++.+-.....+.-.
T Consensus       151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm  230 (440)
T KOG1464|consen  151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM  230 (440)
T ss_pred             HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence            8999998888877666555543333221 21     1122223333334454444 444456788998887766555443


Q ss_pred             HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhc
Q psy10061        179 AEYISRAA-RMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLAR  232 (325)
Q Consensus       179 ~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~  232 (325)
                      . +.+.+| ..+.+-|++.+|..-|-+|..-+.+.|++ ...+--|+.++..+...
T Consensus       231 G-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS  285 (440)
T KOG1464|consen  231 G-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKS  285 (440)
T ss_pred             h-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHc
Confidence            3 444444 57888999999999999998888887754 33444455666666554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.22  Score=41.31  Aligned_cols=109  Identities=18%  Similarity=0.111  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPE  253 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e  253 (325)
                      ..+.-+...++..++..+++++|+..++.++....   +......+-.+++.+.+.+|.++.|...+...  +.|.    
T Consensus        86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~----  158 (207)
T COG2976          86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA----  158 (207)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH----
Confidence            33344556788889999999999999999886422   22233445678999999999999999999886  4453    


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHH
Q psy10061        254 VQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRL  291 (325)
Q Consensus       254 ~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~  291 (325)
                      .....--|+++ ..||.++++.++.+.+...-++...+|
T Consensus       159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~  197 (207)
T COG2976         159 AIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI  197 (207)
T ss_pred             HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence            33334458886 699999999999985555444433333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.81  E-value=0.0036  Score=37.92  Aligned_cols=34  Identities=12%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      +.++.++|.+|..+|++++|+.++++++.+.+.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            4688999999999999999999999999998765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.80  E-value=0.05  Score=50.94  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        152 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       152 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      ...++.|...++.-+.-.+.  +    ...+.-.+.++...+++++|.+.+++++.+.+..      .....++|.+++.
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~--N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~a~all~  386 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPD--N----PYYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNLAQALLK  386 (484)
T ss_pred             hcccchHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence            33477777777664433332  2    2455678999999999999999999999864321      2355789999999


Q ss_pred             cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        232 RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       232 ~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .|++.+|+..+++. .+...+....-.-|.+++ .+|+...+..+...
T Consensus       387 ~g~~~eai~~L~~~-~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         387 GGKPQEAIRILNRY-LFNDPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             cCChHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            99999999999997 111111112233456676 36766666666544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.79  E-value=0.0034  Score=42.69  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ++++|+.+|++++...+..      ..++..+|.+|.++|++++|..++++++...
T Consensus         6 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             CHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3999999999999887653      3577799999999999999999999887653

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.78  E-value=0.31  Score=42.27  Aligned_cols=177  Identities=14%  Similarity=0.061  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q psy10061         33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKA-----------------ATCFKGAKSFQQCKEYLLKAANCYETNKS   95 (325)
Q Consensus        33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a-----------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~   95 (325)
                      -+.++|.++.+.++.      ++|++|++.|+.+                 +..+.+.+++++|+....+-+.++.... 
T Consensus        33 p~~~LY~~g~~~L~~------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-  105 (254)
T COG4105          33 PASELYNEGLTELQK------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-  105 (254)
T ss_pred             CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-
Confidence            467778887777765      6778887777765                 3456677777777777777666665433 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---ccC-HHHHHHHHHHHHHHHhc
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE---ELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~---~~~-~~~A~~~y~~Al~~~~~  171 (325)
                        .+..++.-.|.++...=               -....|...+-.++..+..+..   ... -..|..-...+-+..  
T Consensus       106 --n~dY~~YlkgLs~~~~i---------------~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L--  166 (254)
T COG4105         106 --NADYAYYLKGLSYFFQI---------------DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL--  166 (254)
T ss_pred             --ChhHHHHHHHHHHhccC---------------CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH--
Confidence              33344444444432210               0112334444444444444433   333 222332222222111  


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                             +.-=..+|..|.+.|.|-.|+..++++++-++......   .++..+..+|..+|-.+.|...-.-.
T Consensus       167 -------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~---eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         167 -------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR---EALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             -------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH---HHHHHHHHHHHHhCChHHHHHHHHHH
Confidence                   12234688899999999999999999999888875422   35566888888888888888777664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.73  E-value=0.038  Score=45.48  Aligned_cols=92  Identities=21%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV  223 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  223 (325)
                      .+|+.....+ +.+|..+|++++.-.     +..-...+..++...+..++...|...++...+..+...++    ...+
T Consensus        94 rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~L  164 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHL  164 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchH
Confidence            3444444444 566666665555311     11112344455555555566665555555544432111112    2223


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhh
Q psy10061        224 ALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       224 ~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++.++-..|.+.+|...|+.+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHH
Confidence            4555566666666666666654

>KOG1839|consensus

Probab=96.73  E-value=0.098  Score=54.54  Aligned_cols=183  Identities=14%  Similarity=0.032  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETN-K-SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNR  136 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~  136 (325)
                      +-+.+.+..-...+.|.++.+ .-+++.++... + .+...+.+|..++.++.+.++.++|+.+..+|.-+....  -|.
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            334445666667778888877 66777666632 2 356789999999999999999999999999998887664  355


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      ..-...+.+++....... ...|+..+.+++.+..-.  .+....+.+..+++.++...++++.|+++.+.|+.+...+.
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            666778888887766655 778888888887655322  23455566788999999999999999999999999766553


Q ss_pred             --cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        214 --HLLAIGRLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       214 --~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                        .....+..+..++..+-.++++..|......
T Consensus      1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred             CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence              2334455667788888889999988887776

>PRK15331 chaperone protein SicA; Provisional

Probab=96.73  E-value=0.028  Score=45.38  Aligned_cols=99  Identities=13%  Similarity=0.029  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ...-......|--+...|++++|...|+-...+  .-.+    .+.+.-||.+++..+ |++|+.+|-.|..+-..  ++
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp  105 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DY  105 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CC
Confidence            334444455555556679999999998876542  2222    336788999999887 99999999998877643  33


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      +    .....|.+|..+|+..+|...|+.+++
T Consensus       106 ~----p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        106 R----PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             C----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            2    356799999999999999999998887

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.72  E-value=0.035  Score=49.76  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ...-+|.++...|++++|+..+.+.       ++.+    +..-.-.+|-..+ ++.|.+.++..-+    .++.    .
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE----~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD----~  164 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG-------GSLE----LLALAVQILLKMNRPDLAEKELKNMQQ----IDED----S  164 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHH----HHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC----H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc-------Cccc----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc----H
Confidence            3444567777788888877766542       3332    2333444555566 9999887766533    3222    2


Q ss_pred             HHHHHHH--HHHHcC--CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHH
Q psy10061        181 YISRAAR--MCVRVK--EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQT  256 (325)
Q Consensus       181 ~~~~lg~--~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~  256 (325)
                      ++.+++.  +....|  ++.+|.-.|++..+.+      ......++.++.|++.+|++++|.+.++++-.- +.....+
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~  237 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DPNDPDT  237 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHH
Confidence            4444544  444445  7999999998854322      122356788999999999999999999998222 2334567


Q ss_pred             HHHHHHHH-hcCCH-HHHHHHhcC
Q psy10061        257 LEKLLQAF-DEEDP-EGARQALND  278 (325)
Q Consensus       257 l~~L~~a~-~~gd~-~~~~~~~~~  278 (325)
                      +.+++.+. -.|.+ +...+.+.+
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHH
Confidence            77777764 46665 555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.71  E-value=0.35  Score=41.95  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE  137 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~  137 (325)
                      .+.++|+++..- ...|+|++|.+.|.....-+  -..+.. -.+...++-.+.+.+++++|+...++=+.++-...+.+
T Consensus        33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~--p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRH--PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcC--CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            466788875544 47899999999998876333  222322 56778889999999999999999998887776665543


Q ss_pred             HHHHHHHHHHHHHhcc------C---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        138 AASTVLEKGAKSLEEL------K---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~------~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                         -++.-.|..+...      +   ..+|+.-+++.+.-|+...   .+..+-.                    +...+
T Consensus       109 ---Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~---Ya~dA~~--------------------~i~~~  162 (254)
T COG4105         109 ---YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR---YAPDAKA--------------------RIVKL  162 (254)
T ss_pred             ---HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc---chhhHHH--------------------HHHHH
Confidence               2333333332221      1   2333444444443333321   1111111                    11111


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC-hHHHHHHHHHHHH-hcCCHHHHHHHh
Q psy10061        209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA-PEVQTLEKLLQAF-DEEDPEGARQAL  276 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~-~e~~~l~~L~~a~-~~gd~~~~~~~~  276 (325)
                          .  ...+..-..+|..|++.|.+..|...++.. ..+..+ .....|..|.+++ ..|-.+.+....
T Consensus       163 ----~--d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         163 ----N--DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             ----H--HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence                1  112222356899999999999999999998 556433 3445788888887 577777776653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.64  E-value=0.0057  Score=37.03  Aligned_cols=34  Identities=12%  Similarity=0.064  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      +.++.++|.+|..+|++++|..++++++.+.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            5678888999999999999999999998888765

>KOG1463|consensus

Probab=96.62  E-value=0.5  Score=42.57  Aligned_cols=145  Identities=10%  Similarity=0.090  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCChhh
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      -....+++.+|.+.|+..+-.+..+..-..+...+. .+++.....+-..+....  .+.-+..+.+++++..+.+...-
T Consensus        48 E~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL  126 (411)
T KOG1463|consen   48 EQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL  126 (411)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH
Confidence            346778899999999999888888888777777774 566777777777776553  88899999999999988765433


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .-..-.++..+|...++|.+|+.+....+.-..+..+....-..++--..+|....+..+|...+-.+
T Consensus       127 Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsA  194 (411)
T KOG1463|consen  127 RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSA  194 (411)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHH
Confidence            33344578999999999999999999888888887776555455566677788888888888888775

>KOG2047|consensus

Probab=96.57  E-value=0.28  Score=47.73  Aligned_cols=188  Identities=10%  Similarity=0.012  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHc-------CCH------HHHH
Q psy10061         56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMC--KEL-------NDL------TDVE  120 (325)
Q Consensus        56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y--~~~-------g~~------~eA~  120 (325)
                      .++...+...++..|...|.+++|.+.|.+++.--....|....-++|...-...  .++       ++.      +-..
T Consensus       244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~  323 (835)
T KOG2047|consen  244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM  323 (835)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence            3677788888999999999999999999999887776666555444443321111  111       111      1111


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        121 NLAKQAATLFLEQGNREAASTVLEKGAKSLEE-----LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       121 ~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-----~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                      ..++..++.....-+-.-..+.-++....+..     .++.+-+..|.+|+.-..-....-.-...+..+|.+|-..|+.
T Consensus       324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence            12222221110000000000001122222221     1378888889988764432211222245788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.|...|++++..-  -+.-...+..+.+.+..-+...+++.|.+..+++
T Consensus       404 ~~aRvifeka~~V~--y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  404 DDARVIFEKATKVP--YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             HHHHHHHHHhhcCC--ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            99999999998751  1112335667888999999999999999999996

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.57  E-value=0.0062  Score=35.18  Aligned_cols=31  Identities=6%  Similarity=0.269  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      .++..+|.+|..+|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4678899999999999999999999888753

...

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.52  Score=41.54  Aligned_cols=216  Identities=9%  Similarity=-0.013  Sum_probs=123.2

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++|+..|++-+..   |.....+-..+--...-.++.+|...|++..-.+.-...-+....... ...+.....+.+
T Consensus        17 ~~~~~ai~~yk~iL~k---g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~KiirtLie   92 (421)
T COG5159          17 NDIEKAIGEYKRILGK---GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKIIRTLIE   92 (421)
T ss_pred             hhHHHHHHHHHHHhcC---CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHHHHHHH
Confidence            4788888888765432   221111111222233446678888888887766666655555554432 223333333333


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        109 MCK-ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       109 ~y~-~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      -+. ....++.-+......++...+.....---..-.++..++...+ |..|+....-.+.-+.+-++......++.-=.
T Consensus        93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES  172 (421)
T COG5159          93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES  172 (421)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence            322 2235666677777766665544332222222223444444444 88888888777776766666555555555556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC  248 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~  248 (325)
                      .+|....+..++...+..|-..+...- .+..++..-+.-|..+..--||..|..+|-++ ++|
T Consensus       173 Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         173 KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence            677777777777777666655544332 33344555555666677777788888887776 555

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.48  E-value=0.0085  Score=34.47  Aligned_cols=30  Identities=10%  Similarity=-0.047  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      .++..+|.+|..+|++++|+.++++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            456677777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2471|consensus

Probab=96.48  E-value=0.37  Score=45.46  Aligned_cols=255  Identities=11%  Similarity=0.055  Sum_probs=160.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH-HHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061         64 SKAATCFKGAKSFQQCKEYLLKAAN-CYETNKS-----------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus        64 ~~a~~~y~~~g~~~~A~~~~~~a~~-~~~~~~~-----------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                      +++|-++...+.|.-+..+|.+|++ ...++.+           ....-..+.|.|..|...|++-.|.+|+.++...|.
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            6778888889999999999999995 3333211           122345778899999999999999999999999887


Q ss_pred             HcCCHH-HHHHHHHHH--HHH--------------------------------Hh--cc-----C--HHHHHHHHHHHHH
Q psy10061        132 EQGNRE-AASTVLEKG--AKS--------------------------------LE--EL-----K--SDAALTLYSRAAD  167 (325)
Q Consensus       132 ~~g~~~-~aa~~l~~l--g~~--------------------------------~~--~~-----~--~~~A~~~y~~Al~  167 (325)
                      ..-..+ ..+++..-.  +..                                +.  ..     .  .+-|.-|++.|+-
T Consensus       367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~  446 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY  446 (696)
T ss_pred             cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence            664422 233322110  000                                00  00     1  4667778888876


Q ss_pred             HHhcC---C--------------------------------C-----h-----------hhHHHHHHHHHHHHHHcCCHH
Q psy10061        168 VAHGE---D--------------------------------N-----Y-----------KQAAEYISRAARMCVRVKEFD  196 (325)
Q Consensus       168 ~~~~~---~--------------------------------~-----~-----------~~~~~~~~~lg~~~~~~g~~~  196 (325)
                      +..+.   +                                +     +           .....++-..+.+-.++|+.-
T Consensus       447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i  526 (696)
T KOG2471|consen  447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI  526 (696)
T ss_pred             cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            65210   0                                0     0           011235566677778899999


Q ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cc-------------------------
Q psy10061        197 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GN-------------------------  247 (325)
Q Consensus       197 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~-------------------------  247 (325)
                      .|+..-++.+...+-.+.+...++.|  .+.++..+++..+|..++.-+    +.                         
T Consensus       527 ~AL~~a~kLLq~~~lS~~~kfLGHiY--AaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~  604 (696)
T KOG2471|consen  527 KALSAATKLLQLADLSKIYKFLGHIY--AAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG  604 (696)
T ss_pred             hHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence            99999988887654444455555554  345555667777877766541    01                         


Q ss_pred             ------cCCChHHH--HHHHHHHHHh-cCCHHHHHHHhcC--hhhhcc-c--HHHHHHhhcCCCCCCCCCCCcccccccc
Q psy10061        248 ------CCEAPEVQ--TLEKLLQAFD-EEDPEGARQALND--PFIKHM-D--VEYSRLARDLPLPSATCATPRPASIRQN  313 (325)
Q Consensus       248 ------~~~~~e~~--~l~~L~~a~~-~gd~~~~~~~~~~--~~~~~l-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~  313 (325)
                            |...++++  ++.+|+.++. +|+.++++.++..  .+...+ .  .-+...-.+|.+.-.-.+.|   ++-++
T Consensus       605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~---~lk~~  681 (696)
T KOG2471|consen  605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALA---RLKQC  681 (696)
T ss_pred             CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHH---HHHhc
Confidence                  11223343  5568999985 9999999999976  333322 2  22445556676654444444   67788


Q ss_pred             cCCCcCCCCC
Q psy10061        314 AAPSYVSPHL  323 (325)
Q Consensus       314 ~~~~~~~~~~  323 (325)
                      .-+|.|.-|+
T Consensus       682 ~~~~~v~~~~  691 (696)
T KOG2471|consen  682 THVSFVPGRL  691 (696)
T ss_pred             ccccccCcch
Confidence            8888876654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.41  E-value=0.086  Score=41.82  Aligned_cols=63  Identities=21%  Similarity=0.101  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ++..++..+...+ +++|+..+++++.+.+-.      -.++..+..+|..+|++.+|+..|++....+.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            3444555444444 666666666666654432      13555666667777777777777766665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.40  E-value=0.031  Score=44.10  Aligned_cols=88  Identities=9%  Similarity=0.013  Sum_probs=48.9

Q ss_pred             hhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10061         10 GMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANC   89 (325)
Q Consensus        10 ~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~   89 (325)
                      +.++..+|+..++     .++|++|++.++.-...+--      +  +-+-...-.++.+|...+++++|+..+.+-+++
T Consensus        10 ~~~ly~~a~~~l~-----~~~Y~~A~~~le~L~~ryP~------g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   10 PQELYQEAQEALQ-----KGNYEEAIKQLEALDTRYPF------G--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCC------C--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445566665443     23566666666654444322      1  222244446677777777777777777777777


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHc
Q psy10061         90 YETNKSAYHAAKHLEQAIMMCKEL  113 (325)
Q Consensus        90 ~~~~~~~~~aa~~~~~~~~~y~~~  113 (325)
                      +....+   +-.++...|.++..+
T Consensus        77 hP~hp~---vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   77 HPTHPN---VDYAYYMRGLSYYEQ   97 (142)
T ss_pred             CCCCCC---ccHHHHHHHHHHHHH
Confidence            665432   334455555554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.065  Score=47.32  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C--HHHHHHHHHHHHHHHhcCCCh
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--K--SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--~--~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      +.-+--+|.+|..+|+++.|...|.+|..+   .|+...   .+.-+|.++...  +  ..++...+++++..-..    
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~----  225 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPE---ILLGLAEALYYQAGQQMTAKARALLRQALALDPA----  225 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc----
Confidence            445677888899999999999999988766   343322   344445544322  2  67888888888764322    


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                        ...++.-+|..+.+.|+|.+|+..++..++..+.
T Consensus       226 --~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         226 --NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             --cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence              1356777888888999999999988888876544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.37  E-value=0.065  Score=42.53  Aligned_cols=61  Identities=13%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++..++..+...|++++|+.++++++.+.     +... .++..+..+|...|++..|...|+++
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----P~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALD-----PYDE-EAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----TT-H-HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3577788999999999999999999998863     2222 46677899999999999999999997

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.32  E-value=0.012  Score=33.97  Aligned_cols=30  Identities=13%  Similarity=0.097  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      .++..+|.+|..+|++++|+.++++++++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            466777777777777777777777777664

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.29  E-value=0.14  Score=49.14  Aligned_cols=159  Identities=13%  Similarity=0.039  Sum_probs=102.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYH--AAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~--aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      .||-+..+..+.++.+ ...+..+-.  .--.|......+..    ..+.+.|.+........|      +.-+-.+...
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------P~s~lfl~~~  273 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------PNSALFLFFE  273 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC------CCcHHHHHHH
Confidence            4677888888877654 222211110  01122222222222    223344545444444333      3334456677


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                      |.++...+ .++|+++|++++.....  ...-..-++..++.++.-+.+|++|..+|.+..+.     +.+..+.+.+-.
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~  346 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHH
Confidence            77877666 99999999998843222  22223457889999999999999999999887663     446677788889


Q ss_pred             HHHHHhcCCH-------HHHHHHHHhh
Q psy10061        226 VLVQLARGDT-------VAAEKAFKEW  245 (325)
Q Consensus       226 g~~~~~~gd~-------~~A~~~~~~~  245 (325)
                      |.|+...|+.       ++|.+.|.+.
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            9999999999       8999999997

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551|consensus

Probab=96.29  E-value=0.085  Score=47.22  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             hhhhhhHHHHHHhhchhccccc---cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLSTMTS---DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEY   82 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~~~~~---~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~   82 (325)
                      +.=..++.++|.+|+= -||..   .|++ ....-..++++..-.     .++.++-++.|..=|+-|.+.++|..|..+
T Consensus        31 k~~~~Dew~kEm~k~P-fFMt~~p~~gd~-~~~~~~LqslK~da~-----E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~  103 (390)
T KOG0551|consen   31 KGFHEDEWEKEMNKVP-FFMTRAPSEGDP-NPDNVCLQSLKADAE-----EGEPHEQAENYKEEGNEYFKEKRYKDAVES  103 (390)
T ss_pred             CCCCHHHHHHHHhcCc-HHHhcCCCCCCC-CccHHHHHHhhhccc-----cCChHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence            3334455666666521 13322   2444 223333445554422     367788999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH
Q psy10061         83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL  161 (325)
Q Consensus        83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~  161 (325)
                      |.+++.  .+.+|+.--+.+|.|-+-+....|+|..++.-..+|+.+-      ..-..++.+-+.++..++ ++.|+.+
T Consensus       104 Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~------P~h~Ka~~R~Akc~~eLe~~~~a~nw  175 (390)
T KOG0551|consen  104 YTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK------PTHLKAYIRGAKCLLELERFAEAVNW  175 (390)
T ss_pred             HHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC------cchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999864  5678888889999999999899999999999888887552      122345666666766666 7888888


Q ss_pred             HHHHHHHHhc
Q psy10061        162 YSRAADVAHG  171 (325)
Q Consensus       162 y~~Al~~~~~  171 (325)
                      +++.+.+..+
T Consensus       176 ~ee~~~~d~e  185 (390)
T KOG0551|consen  176 CEEGLQIDDE  185 (390)
T ss_pred             HhhhhhhhHH
Confidence            8777666543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.28  E-value=0.11  Score=45.44  Aligned_cols=91  Identities=20%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC
Q psy10061        115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK  193 (325)
Q Consensus       115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  193 (325)
                      .-...++++.+|.+.|...+...-.......+|.-|...+ +++|+.+|+.+...+++.|...-...++..+-.++...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            4456799999999999999998888888999999999887 999999999999999999998888899999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy10061        194 EFDKAADLIRQE  205 (325)
Q Consensus       194 ~~~~A~~~~~~a  205 (325)
                      +.+..+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            999888775543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1839|consensus

Probab=96.24  E-value=0.071  Score=55.53  Aligned_cols=180  Identities=16%  Similarity=0.074  Sum_probs=140.3

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA  106 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~  106 (325)
                      +.+.++.+ .-++++++...+   +--..+-+.+|..++.++...+++++|+..-.++.-+....  -+.......|.++
T Consensus       946 ~~~~~~~~-~~~slnl~~~v~---~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen  946 DGFSEAYE-LPESLNLLNNVM---GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred             cchhhhhh-hhhhhhHHHHhh---hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence            45556666 555665554311   23346778999999999999999999999998888777654  3677888999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC--ChhhHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLE-QG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED--NYKQAAEY  181 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~-~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~--~~~~~~~~  181 (325)
                      +......+....|+..+..+..+..- .| +....+....+++.++...+ ++.|+.+.+.|+.+.....  .....+.+
T Consensus      1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred             HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence            98888888888898888888766432 22 46667777889999988866 9999999999999776652  33445678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      +..++.++..++++..|+.+.+....++...
T Consensus      1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence            8899999999999999999999999988753

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.20  E-value=0.0055  Score=35.74  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061        161 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       161 ~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  199 (325)
                      +|++|+++.+..      ..++.++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence            477888876554      468889999999999998886

>KOG3081|consensus

Probab=96.14  E-value=0.15  Score=44.34  Aligned_cols=169  Identities=18%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .....+.+|.+.|++++|.+.......+       +-.  +++  -.++.... .+-|....++..++-.+        .
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~--Al~--VqI~lk~~r~d~A~~~lk~mq~ided--------~  170 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGENL-------EAA--ALN--VQILLKMHRFDLAEKELKKMQQIDED--------A  170 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccchH-------HHH--HHH--HHHHHHHHHHHHHHHHHHHHHccchH--------H
Confidence            4555678888888888888776552111       111  111  12333333 55555555555544322        3


Q ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHH
Q psy10061        181 YISRAARMCVRV----KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQ  255 (325)
Q Consensus       181 ~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~  255 (325)
                      ++.+++..++..    +++.+|.-+|++.-+.      +......++..+.|++.+|++++|...++.+ +.-.+.  ..
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--pe  242 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PE  242 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HH
Confidence            666666665543    3566666666543221      2233456678888888899999999988887 333222  34


Q ss_pred             HHHHHHHH-Hh-cCCHHHHHHHhcC--------hh---hhcccHHHHHHhhcCCC
Q psy10061        256 TLEKLLQA-FD-EEDPEGARQALND--------PF---IKHMDVEYSRLARDLPL  297 (325)
Q Consensus       256 ~l~~L~~a-~~-~gd~~~~~~~~~~--------~~---~~~l~~~~~~~~~~l~~  297 (325)
                      +|.+++-+ .. ..|++.-...+.+        +.   +..-+.+..+++.+..+
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~qy~~  297 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVLQYDT  297 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            55555554 33 3453333333322        22   23335566666666543

>KOG0551|consensus

Probab=96.09  E-value=0.082  Score=47.34  Aligned_cols=117  Identities=11%  Similarity=0.067  Sum_probs=93.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061         87 ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA  165 (325)
Q Consensus        87 ~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A  165 (325)
                      +.....-|++...|..|..=|+-|.+..+|..|+.+|.+.+.  .+.+|.+--+.+|.|-+-.....+ |.+++.-+.+|
T Consensus        68 lK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   68 LKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             hhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333334578888999999999999999999999999999874  577888777778888777666554 99999888888


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      +.+-...      ..++.+-+.+++.+.++.+|+.++++.+.+..+
T Consensus       146 l~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  146 LKLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            7654332      467778888999999999999999988776543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.03  E-value=0.67  Score=43.97  Aligned_cols=123  Identities=12%  Similarity=0.050  Sum_probs=82.6

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C---------C------
Q psy10061        112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D---------N------  174 (325)
Q Consensus       112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~---------~------  174 (325)
                      +..+++.-+++-++|+++....-      .+|.-++.  +.-. ..++.++|++|++..+.. +         .      
T Consensus       180 RERnp~aRIkaA~eALei~pdCA------dAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCA------DAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhh------HHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            34667777778888887754332      23332221  1112 677777777777655431 0         0      


Q ss_pred             ---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q psy10061        175 ---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  246 (325)
Q Consensus       175 ---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~  246 (325)
                         ..-...+...++.+..++|+.++|++.+++.+..++..+.    -.++.++..+++..+.|.++...+.+++
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~----l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN----LNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch----hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence               0011345678999999999999999999988876542222    2366789999999999999999999984

The molecular function of this protein is uncertain.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.17  Score=44.80  Aligned_cols=28  Identities=11%  Similarity=-0.014  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      -+.-||.+|+.+|+++.|...|.+++.+
T Consensus       158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL  185 (287)
T COG4235         158 GWDLLGRAYMALGRASDALLAYRNALRL  185 (287)
T ss_pred             hHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            3344444444444444444444444444

>KOG4648|consensus

Probab=95.97  E-value=0.022  Score=51.12  Aligned_cols=96  Identities=8%  Similarity=-0.068  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +-.-|+-|.++|.|++|++||.+++.++--+-      ..+.+-+..|.... +..|..-+..|+.+-+.      -..+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KA  167 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKA  167 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHH
Confidence            45568899999999999999999987754222      24566777777776 88888888888876432      2467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      |.+-|..-..+|...+|-+-++.+|++-+
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALEP  196 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence            78888888888899999998888887643

>KOG1070|consensus

Probab=95.95  E-value=0.47  Score=50.11  Aligned_cols=185  Identities=12%  Similarity=0.081  Sum_probs=109.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYE--TNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK  148 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~--~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~  148 (325)
                      ..+++.++|...+++|+....  .-......-.+|.|+-+.|   |.-+.-.+.+++|..+       ..+-.++..|..
T Consensus      1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqy-------cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQY-------CDAYTVHLKLLG 1538 (1710)
T ss_pred             hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHh-------cchHHHHHHHHH
Confidence            455666777777666655442  1111222333333333333   3333344455555433       334456777777


Q ss_pred             HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061        149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL  227 (325)
Q Consensus       149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  227 (325)
                      +|+... +++|.++|+.-++-|++.      ..+|...|..++++.+-+.|..++.+||.-.++..+.    ......+.
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv----~~IskfAq 1608 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV----EFISKFAQ 1608 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH----HHHHHHHH
Confidence            887776 888888888777766522      3577778888888888888888888887765552221    23345677


Q ss_pred             HHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHH-HhcCCHHHHHHHhcC
Q psy10061        228 VQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQA-FDEEDPEGARQALND  278 (325)
Q Consensus       228 ~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~  278 (325)
                      +.+..||.++++..|+.. ..+. ..+-+.+.   ++. +..||..-++...++
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY---id~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY---IDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhCccchhHHHHH---HHHHHccCCHHHHHHHHHH
Confidence            778888888888888775 2332 22333222   343 357777777777776

>KOG3081|consensus

Probab=95.90  E-value=0.48  Score=41.32  Aligned_cols=148  Identities=11%  Similarity=0.189  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061         62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST  141 (325)
Q Consensus        62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~  141 (325)
                      ....++.+|..-+++++|....... .-.          .+..--..|+.++.+++-|....++..++    .+-    .
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~-~~l----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded----~  170 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG-ENL----------EAAALNVQILLKMHRFDLAEKELKKMQQI----DED----A  170 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc-chH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chH----H
Confidence            3344567788888888888765541 111          11122234566666777666666555433    221    1


Q ss_pred             HHHHHHHHHhcc--C---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061        142 VLEKGAKSLEEL--K---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  216 (325)
Q Consensus       142 ~l~~lg~~~~~~--~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  216 (325)
                      .+..++..|...  +   +..|.-.|++--+      +......+++..+.+++.+|+|++|...++.+|.-.  .++  
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~d--  240 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKD--  240 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhc------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCC--
Confidence            455666666543  2   5555555544322      234445789999999999999999999999998742  222  


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061        217 AIGRLAVALVLVQLARGDTVAAEK  240 (325)
Q Consensus       217 ~~~~~~~~lg~~~~~~gd~~~A~~  240 (325)
                        +.++.|+.++-...|-...+.+
T Consensus       241 --petL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  241 --PETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             --HHHHHHHHHHHHHhCCChHHHH
Confidence              3566778888888776544433

>KOG0687|consensus

Probab=95.84  E-value=1.1  Score=40.34  Aligned_cols=130  Identities=10%  Similarity=0.078  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHH
Q psy10061         79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDA  157 (325)
Q Consensus        79 A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~  157 (325)
                      -++-+.+..+=..+..-......+..+.++.|.+.|+-+.|.+++.+-.+--...|..-...-+..++|.+|...+ ..+
T Consensus        83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~  162 (393)
T KOG0687|consen   83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE  162 (393)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence            3344444443333322245677889999999999999999999999888777778887778888888998887765 444


Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                         ..++|-.++++.||.......-.--|...+...++.+|..+|-..+..+.+
T Consensus       163 ---~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  163 ---SIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             ---HHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence               345666777777876555444445677777888999999999888776654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=1.2  Score=39.32  Aligned_cols=145  Identities=6%  Similarity=0.036  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      .-.+..+++.+|...|++..-.+.....-+.+...-. .+.+.....+-..+... + ++..+..+...+++..+.+...
T Consensus        44 qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f  122 (421)
T COG5159          44 QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF  122 (421)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999988777666666555554432 34455566666666544 3 8889999999999887765443


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  244 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~  244 (325)
                      ..-+.-.++..++.+.|+|.+|+....-.+.-+....+.......++--..+|....+..++...+-.
T Consensus       123 Lr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa  190 (421)
T COG5159         123 LRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA  190 (421)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence            33344457889999999999999998888877777665444434445555666666666666555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.80  E-value=0.92  Score=38.53  Aligned_cols=69  Identities=6%  Similarity=-0.000  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      .+-+.|.-.|++ |.+|-..|-+.-|..-|.+++.+..+.      +.+++-+|.-+...|+|+-|.+.+...+++
T Consensus        60 ~~eeRA~l~fER-GvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785          60 TDEERAQLLFER-GVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             ChHHHHHHHHHh-cchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence            444566666665 888888898888988888888887655      457888888888889999998888877654

>KOG4642|consensus

Probab=95.75  E-value=0.052  Score=46.41  Aligned_cols=97  Identities=15%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE  144 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~  144 (325)
                      .=|+.+.....|+.|+++|.+++-+....      +..|.|-+.+|.+..+++.+..-.++|+++.      ...+..+.
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk~h~   82 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVKAHY   82 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHHHHH
Confidence            33555666677888888888887665432      4578888999999999999999999988773      33344566


Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      -+|.+..... |++|+.++++|..+.+...
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            7777777665 9999999999999988753

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.73  E-value=0.012  Score=33.45  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ++.++|.++.+.|++++|+..|++.+..+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            45677777777777777777777776654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.70  E-value=2.1  Score=41.16  Aligned_cols=121  Identities=14%  Similarity=0.033  Sum_probs=82.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHhcc---C--HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKG-----AKSLEEL---K--SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l-----g~~~~~~---~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .||.+..+..+.++.+    .++.......+.-+     -..+...   +  .+.+.+.+......|+..      .--+
T Consensus       201 ~gdR~~GL~~L~~~~~----~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl  270 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK----SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFL  270 (468)
T ss_pred             CCcHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHH
Confidence            3777888888877654    23222222222222     1112221   2  677777777777777643      3456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..-|.++...|+.++|++.|++++....+..+  ...-++..++.++..+.|+++|.++|.+.
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q--l~~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQ--LHHLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHh--HHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            78899999999999999999999854333322  23456789999999999999999999997

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=95.48  E-value=1.3  Score=41.89  Aligned_cols=165  Identities=13%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHhc-----
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF-------QQCKEYLLKAANCYETN-----   93 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~-------~~A~~~~~~a~~~~~~~-----   93 (325)
                      ++-++|+-|...|+-..+-++.     .+-|...+.+++-++.+....+..       ++...+++.|...|.+.     
T Consensus       219 Fml~Dy~~A~s~Y~~~k~Df~~-----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~  293 (414)
T PF12739_consen  219 FMLRDYELAYSTYRLLKKDFKN-----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRC  293 (414)
T ss_pred             HHHccHHHHHHHHHHHHHHHhh-----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccc
Confidence            3334677777777766666654     244444455555555554444422       24455555555555552     


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q psy10061         94 KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL--EQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG  171 (325)
Q Consensus        94 ~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~--~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~  171 (325)
                      .....+.++....++++...+.+.++...+-++...+.  ..+. .+.+-.+.+++.+|                .+ ..
T Consensus       294 ~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~-~~~alllE~~a~~~----------------~~-~~  355 (414)
T PF12739_consen  294 SLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP-FGSALLLEQAAYCY----------------AS-LR  355 (414)
T ss_pred             ccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHhh----------------cc-cc
Confidence            22234445555555555555665555555444443322  1111 11333334444333                00 11


Q ss_pred             C-C---C---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        172 E-D---N---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       172 ~-~---~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      . .   .   .+..+--+.-.|.-|.+.|+...|+.+|.+++.++...+
T Consensus       356 ~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~  404 (414)
T PF12739_consen  356 SNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKG  404 (414)
T ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC
Confidence            1 1   0   223333444566788999999999999999999887543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG1538|consensus

Probab=95.46  E-value=0.75  Score=44.94  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=16.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +-.+++..++|++|..+.++.-+.
T Consensus       779 iVqlHve~~~W~eAFalAe~hPe~  802 (1081)
T KOG1538|consen  779 LVQLHVETQRWDEAFALAEKHPEF  802 (1081)
T ss_pred             HhhheeecccchHhHhhhhhCccc
Confidence            334677889999998877664443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=95.40  E-value=2.5  Score=45.65  Aligned_cols=52  Identities=10%  Similarity=0.007  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM  109 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~  109 (325)
                      ..+....-.|++|...|.|.+|+..|..|+.+.+..+|+-..|.+++.++.+
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~  291 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVC  291 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHH
Confidence            3456677789999999999999999999999999999999999999998755

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG4642|consensus

Probab=95.38  E-value=0.12  Score=44.28  Aligned_cols=98  Identities=12%  Similarity=0.094  Sum_probs=76.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      ..-|+.|..-.+|+.|+.+|-+|+.+      ....+..+.+-+..+.+.+ ++....-.++|+++...      .....
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h   81 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAH   81 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHH
Confidence            33455666667899999999999866      2334556778888888776 99999999999987543      34567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      .-+|....+...|++|+..++++..+.++..
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999998887643

>KOG2581|consensus

Probab=95.36  E-value=2.1  Score=39.60  Aligned_cols=223  Identities=9%  Similarity=0.047  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      ++.+|.-....|...++...-...+..-+....--.+..+.+...+-+...|...+.|+.|-....+..  |-....-..
T Consensus       168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne  245 (493)
T KOG2581|consen  168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNE  245 (493)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHH
Confidence            356666666777777776665555555444443334778888888889999999888888777666543  222333336


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        139 ASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       139 aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      .++.+.-+|.+..-+ +|..|.+++.+|+...+.....-..-.+-..+-.+-.-+|.+++=.-.        ++.+....
T Consensus       246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F--------~Qp~~~ks  317 (493)
T KOG2581|consen  246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVF--------RQPGMRKS  317 (493)
T ss_pred             HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh--------cCccHHHH
Confidence            788888899998755 599999999999988776332211112222233344456777753322        22221111


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~  296 (325)
                      .. .|+.+.. -...||..+-.+.++++ +.|..-+-..++.+|       +.+-+.+.++.-.+..----+.+|+++|.
T Consensus       318 L~-~Yf~Lt~-AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL-------R~NVIkTgIR~ISlsYSRISl~DIA~kL~  388 (493)
T KOG2581|consen  318 LR-PYFKLTQ-AVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL-------RHNVIKTGIRKISLSYSRISLQDIAKKLG  388 (493)
T ss_pred             HH-HHHHHHH-HHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH-------HHHHHHHhhhheeeeeeeccHHHHHHHhc
Confidence            21 1122222 13457777777777777 556433333333333       22334444555111122223455666666


Q ss_pred             CCCC
Q psy10061        297 LPSA  300 (325)
Q Consensus       297 ~~~~  300 (325)
                      +-+.
T Consensus       389 l~Se  392 (493)
T KOG2581|consen  389 LNSE  392 (493)
T ss_pred             CCCc
Confidence            5444

>KOG2796|consensus

Probab=95.28  E-value=1.8  Score=37.92  Aligned_cols=135  Identities=10%  Similarity=0.040  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ..+.+.+..++.-.+.|.-.++.+.+.++-     +.+.--.....+|.+-.+-+ .+.|..++++.-......+.....
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence            445555667777777888888888887762     22333345667777777666 666667776555444444445555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .-+..+.+.+|.-.++|.+|...|.+.+..-    +..  +.+-++-++|.+..|+...|++..+.+
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~~~--~~a~NnKALcllYlg~l~DAiK~~e~~  312 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----PRN--AVANNNKALCLLYLGKLKDALKQLEAM  312 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccC----CCc--hhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888889999999999988888766532    111  234467788888899999999998886

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=2  Score=38.08  Aligned_cols=133  Identities=11%  Similarity=0.070  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-H
Q psy10061         77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-S  155 (325)
Q Consensus        77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~  155 (325)
                      ++-++-+.+.++-.+..+-....+.+..|+|+.|...++.+.+.++..+.+.-....|-.-...-+-.++|.+|.... .
T Consensus        92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV  171 (412)
T COG5187          92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV  171 (412)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence            444444544444343333345678899999999999999999999999988877777877777777888898888776 4


Q ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        156 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       156 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      .+.++   .+-.+.++.|+.......-.--|...+...++.+|..++-..+..+.++
T Consensus       172 ~e~lE---~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~  225 (412)
T COG5187         172 EESLE---VADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS  225 (412)
T ss_pred             HHHHH---HHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence            44443   4445666777765544444446666777788999988888777666543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.25  E-value=0.045  Score=32.72  Aligned_cols=33  Identities=9%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      +++..+|.+.+..++|++|+.-|++++++.+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            578899999999999999999999999986654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.22  E-value=0.035  Score=34.30  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      .++..+|.+|..+|++++|+++|++++...+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            36778999999999999999999999987543

>KOG2041|consensus

Probab=94.96  E-value=4.3  Score=40.31  Aligned_cols=32  Identities=9%  Similarity=0.271  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10061         56 YDSAADDYSKAATCFKGAKSFQQCKEYLLKAA   87 (325)
Q Consensus        56 ~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~   87 (325)
                      -+.-.++|...|.-|.....|++|.++|.+..
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33445778888888888888888888887654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.88  E-value=2.6  Score=37.44  Aligned_cols=141  Identities=21%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061         75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSL  150 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~  150 (325)
                      +..+|.+.|..+.+    .    +...+..++|.+|..    ..++.+|..+|++|.+.    |+... ..+...+|.+|
T Consensus        92 ~~~~A~~~~~~~a~----~----g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~  158 (292)
T COG0790          92 DKTKAADWYRCAAA----D----GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAY  158 (292)
T ss_pred             cHHHHHHHHHHHhh----c----ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHH
Confidence            45666766663321    1    223456678888876    34888999999998744    54433 44567778777


Q ss_pred             hcc----C----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        151 EEL----K----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       151 ~~~----~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      ...    .    ...|+..|.+|.+..        ...+...+|.+|..    ..++.+|+.+|.++.+.    ++    
T Consensus       159 ~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~----  222 (292)
T COG0790         159 LSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD----  222 (292)
T ss_pred             HcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----
Confidence            764    2    348888888887654        23567788888765    34899999999988663    33    


Q ss_pred             HHHHHHHHHHHHhcC---------------CHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARG---------------DTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~g---------------d~~~A~~~~~~~  245 (325)
                      ....+.++ ++...|               +...|...+...
T Consensus       223 ~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~  263 (292)
T COG0790         223 GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKA  263 (292)
T ss_pred             HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHH
Confidence            23445667 555555               666666666665

>PRK11906 transcriptional regulator; Provisional

Probab=94.85  E-value=1.4  Score=41.62  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      ..+|.++-++|+++-..+      +.++..+|.++...++++.|+..|++|+.+.+.      .+.++...|.++...|+
T Consensus       320 ~~~a~~~A~rAveld~~D------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~  387 (458)
T PRK11906        320 AQKALELLDYVSDITTVD------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEK  387 (458)
T ss_pred             HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCC
Confidence            677888888888765443      357788999999999999999999999887432      22456678899999999


Q ss_pred             HHHHHHHHHhhcccCCChHHHHHHHH-HHHHh
Q psy10061        235 TVAAEKAFKEWGNCCEAPEVQTLEKL-LQAFD  265 (325)
Q Consensus       235 ~~~A~~~~~~~~~~~~~~e~~~l~~L-~~a~~  265 (325)
                      .++|.+.++++-..++.+.+..+.++ ++.|-
T Consensus       388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~  419 (458)
T PRK11906        388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYV  419 (458)
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence            99999999998555555545444444 44653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.76  E-value=0.12  Score=43.67  Aligned_cols=98  Identities=12%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                      .+.-+..+..-|.+|...+ .+-|.--+.+++.+.+..      .++++-+|..+...|+|+.|.+.|...+++-+.-  
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--  132 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--  132 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--
Confidence            3455566677777777777 667777777777765443      4677888888888888888888888777753221  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                          ..++.|.|+....-|++.-|.+-+.++
T Consensus       133 ----~Ya~lNRgi~~YY~gR~~LAq~d~~~f  159 (297)
T COG4785         133 ----NYAHLNRGIALYYGGRYKLAQDDLLAF  159 (297)
T ss_pred             ----hHHHhccceeeeecCchHhhHHHHHHH
Confidence                135567777777788888888777775

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.67  E-value=3  Score=37.09  Aligned_cols=158  Identities=15%  Similarity=0.046  Sum_probs=98.1

Q ss_pred             cccHHHHHHHHHHHHhhhc------ccc-c----CCCCCHHHHHHHHHHH------------HHHHHh----cCCHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLK------TSL-L----KWKPDYDSAADDYSKA------------ATCFKG----AKSFQQCK   80 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~------~~~-~----~~~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~   80 (325)
                      .+.+..+.+.+.++.....      -+. +    ....|+..|.+.|..+            |.+|..    ..+..+|.
T Consensus        54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~  133 (292)
T COG0790          54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKAL  133 (292)
T ss_pred             cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHH
Confidence            3578888888887764111      100 0    1146677777777765            345554    34888999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-------DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL  153 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-------~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~  153 (325)
                      ..|.+|++.-    +... +.+...++.+|..-.       +...|..+|.+|....        ...+..++|.+|...
T Consensus       134 ~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G  200 (292)
T COG0790         134 KYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKG  200 (292)
T ss_pred             HHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcC
Confidence            9998887543    3222 455677777777631       2225666666665443        344677888888754


Q ss_pred             -----CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHH
Q psy10061        154 -----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK---------------EFDKAADLIRQEIG  207 (325)
Q Consensus       154 -----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~al~  207 (325)
                           ++.+|..+|.+|.+.    ++    ......++ ++...|               +...|..++..+-.
T Consensus       201 ~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         201 LGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             CCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence                 399999999999763    33    34556677 666555               55666666655443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.66  E-value=0.051  Score=30.77  Aligned_cols=30  Identities=17%  Similarity=0.060  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW-GNCCE  250 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~  250 (325)
                      +++.+|.++...|++++|.+.|+++ ..|.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5678999999999999999999997 55543

>KOG2471|consensus

Probab=94.64  E-value=0.071  Score=50.07  Aligned_cols=84  Identities=11%  Similarity=0.008  Sum_probs=64.8

Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHH-HHhcC--C---C------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAAD-VAHGE--D---N------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~-~~~~~--~---~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ++++|-|+...+ |.-+..+|.+|+. ...+.  |   .      .....+++.++|..|...|+.-.|.++|.++...+
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            478898888888 9999999999995 32221  1   0      11235788999999999999999999999999887


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhc
Q psy10061        210 QESEHLLAIGRLAVALVLVQLAR  232 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~lg~~~~~~  232 (325)
                      ..      .++.|++++.|++..
T Consensus       366 h~------nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  366 HR------NPRLWLRLAECCIMA  382 (696)
T ss_pred             hc------CcHHHHHHHHHHHHH
Confidence            54      335778888888764

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.62  E-value=2.9  Score=36.79  Aligned_cols=154  Identities=13%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHH
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT-DVENLAKQAATLFLE  132 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~-eA~~~~~~A~~~~~~  132 (325)
                      ++|++|+++....+..+.+.|++.-+.+.-.-.++++.+.+...... ...+++.+....+.-+ +-..+..+|+.....
T Consensus         4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~   82 (260)
T PF04190_consen    4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF   82 (260)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence            56667777766766666677777777776666666766654333222 3356666666554322 234555666666533


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH-----------HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRA-----------ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD  200 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A-----------l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  200 (325)
                      .+...+-...+..+|.+|-..+ +.+|..|+--+           +......+..........+.-.-|...++...|..
T Consensus        83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~  162 (260)
T PF04190_consen   83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE  162 (260)
T ss_dssp             SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence            3344455667888888887776 88888877321           11111223333333334445556778899999988


Q ss_pred             HHHHHHHH
Q psy10061        201 LIRQEIGY  208 (325)
Q Consensus       201 ~~~~al~~  208 (325)
                      .+..-++.
T Consensus       163 ~~~~f~~~  170 (260)
T PF04190_consen  163 LFDTFTSK  170 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

; PDB: 3LKU_E 2WPV_G.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.61  E-value=3.1  Score=36.99  Aligned_cols=59  Identities=8%  Similarity=-0.012  Sum_probs=28.3

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLF  130 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~  130 (325)
                      ..|+++.|..++.++-.......  .....+..+.++|.-....+ ++++|+.++++|.++.
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l   66 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL   66 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            34555555555555544444221  11234445555555555555 5555555555555554

It is also involved in sporulation [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.37  E-value=0.63  Score=32.64  Aligned_cols=64  Identities=9%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      +|...+..+|+..++++++.....   ...-.++.-+..+|...|+|.+.+++-.+-++++++.+++
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            454445899999999999876553   3345677788899999999999999999989988887654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.21  E-value=4.6  Score=37.38  Aligned_cols=239  Identities=15%  Similarity=0.106  Sum_probs=129.1

Q ss_pred             ccHHHHHHHHHHHHhhhccc---c--------cCCCCCHHHHHHHHHHHHH-----------H---HHhcCCHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTS---L--------LKWKPDYDSAADDYSKAAT-----------C---FKGAKSFQQCKEYL   83 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~---~--------~~~~~~~~~A~~~y~~a~~-----------~---y~~~g~~~~A~~~~   83 (325)
                      |+=..|-++-.++-+++...   +        -...++|+.|-..|+-...           +   -+..|+.+-|..+-
T Consensus        98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA  177 (531)
T COG3898          98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA  177 (531)
T ss_pred             CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence            45556666666665554320   0        0014888888888886541           1   24678888888888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhccCHHHHHH
Q psy10061         84 LKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR---EAASTVLEKGAKSLEELKSDAALT  160 (325)
Q Consensus        84 ~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~---~~aa~~l~~lg~~~~~~~~~~A~~  160 (325)
                      ..+......+.  +.    ....-......|+++.|+.+.+.......-..+.   ..++-..-+.+... ..++.+|..
T Consensus       178 e~Aa~~Ap~l~--WA----~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~  250 (531)
T COG3898         178 ERAAEKAPQLP--WA----ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARD  250 (531)
T ss_pred             HHHHhhccCCc--hH----HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHH
Confidence            88777766552  22    2222233456699999999988766544333332   23322222222222 223555555


Q ss_pred             HHHHHHHHHhc--------------CCChhhHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        161 LYSRAADVAHG--------------EDNYKQAAEY---------ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       161 ~y~~Al~~~~~--------------~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      .-.+++++...              .++....+.+         +=.|+.+|....--+.+++-++++-.+ .++...  
T Consensus       251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L-~slk~n--  327 (531)
T COG3898         251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL-ESLKPN--  327 (531)
T ss_pred             HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH-HhcCcc--
Confidence            55555544321              2222222222         224666677666666677777766554 222211  


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHhcCCHHHHHHHhc
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPEGARQALN  277 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~  277 (325)
                      .....+..+..-+..|++..|...-+........+..-.|..=++..+.||.+.++.-+.
T Consensus       328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence            223445677788889999999888777633322222222211122234688887776554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.20  E-value=3.4  Score=39.36  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=81.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----------CCH---
Q psy10061         70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ----------GNR---  136 (325)
Q Consensus        70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~----------g~~---  136 (325)
                      ...-.+...-+++-.+|+++....      +.+|.-+++=  ......++.++|++|++..+..          |..   
T Consensus       178 AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEINPDC------ADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            445667777777777888777543      4455544432  2234678888888887764332          111   


Q ss_pred             ------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061        137 ------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ  204 (325)
Q Consensus       137 ------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  204 (325)
                            .--..+-.++|.+..+.| .++|++.+++.+..+...+    ...+..++...+...+.|.++-.++.+
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                  111234456788888888 9999999999887665322    234778899999999999998777655

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.13  E-value=2.9  Score=38.02  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc--
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT-LFLEQ--  133 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~-~~~~~--  133 (325)
                      ..-+.++.+.+.+.++.|+++-|..++.++.......+..  ...+...-+.+....|+..+|+...+..+. .....  
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~  220 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID  220 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence            4555666777777777777777777776655543222211  223444445666677888888887777766 22211  


Q ss_pred             -------------------------CCHHHHHHHHHHHHHHHhcc------C-HHHHHHHHHHHHHHHh
Q psy10061        134 -------------------------GNREAASTVLEKGAKSLEEL------K-SDAALTLYSRAADVAH  170 (325)
Q Consensus       134 -------------------------g~~~~aa~~l~~lg~~~~~~------~-~~~A~~~y~~Al~~~~  170 (325)
                                               .+....+.++..+|......      . .+.++..|++|+.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                     12344556666666666554      2 6667777777766544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3024|consensus

Probab=94.07  E-value=3.9  Score=36.06  Aligned_cols=205  Identities=18%  Similarity=0.102  Sum_probs=128.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      .+++-+|...|.-+..-|...+.++.|++..-..+.++-+.+....++.....+.++|.+. .........         
T Consensus        19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka-~~ad~~~~~---------   88 (312)
T KOG3024|consen   19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA-EVADSLLKV---------   88 (312)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HhhHhHHHH---------
Confidence            3788889999999999898888999999988888888777766666677666666666551 111111111         


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q psy10061        133 QGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI---  206 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---  206 (325)
                                 .+++.+....+  -.+-..+.+.++++..+- +-..+-...+.-+|..+..-+++.+|..+|-.+-   
T Consensus        89 -----------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s  157 (312)
T KOG3024|consen   89 -----------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGS  157 (312)
T ss_pred             -----------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChH
Confidence                       23333333332  223345556667766653 2222334566778888888888888887774321   


Q ss_pred             -------HHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-c---------------------ccCCChHHHHH
Q psy10061        207 -------GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-G---------------------NCCEAPEVQTL  257 (325)
Q Consensus       207 -------~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~---------------------~~~~~~e~~~l  257 (325)
                             +.....+........+.+...-|+...|...|.+.+..+ .                     -+.....-..+
T Consensus       158 ~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl  237 (312)
T KOG3024|consen  158 KFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFL  237 (312)
T ss_pred             HHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHHHH
Confidence                   111111111112234556666777788888888777764 1                     11233445677


Q ss_pred             HHHHHHHhcCCHHHHHHHhcC
Q psy10061        258 EKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       258 ~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      .-|...++.+|...+.....+
T Consensus       238 ~~Ll~t~~~k~~~~f~~L~~~  258 (312)
T KOG3024|consen  238 HFLLETIQRKDLPLFLMLRVK  258 (312)
T ss_pred             HHHHHHHhccccHHHHHHHHH
Confidence            788899999999999998876

>KOG3785|consensus

Probab=94.06  E-value=0.53  Score=42.75  Aligned_cols=89  Identities=11%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        146 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       146 lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                      +-..+...+|.-|+.+++-.+.+-+     .....+-.++|.++..+|+|++|+..|+-...    ..+.  .+....++
T Consensus        29 Ledfls~rDytGAislLefk~~~~~-----EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnL   97 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDR-----EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNL   97 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccch-----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhH
Confidence            4455556668888887766653322     22345667899999999999999999876544    1222  23467889


Q ss_pred             HHHHHhcCCHHHHHHHHHhh
Q psy10061        226 VLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       226 g~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.|++..|.|.+|...-.++
T Consensus        98 Acc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   98 ACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999988876

>KOG2610|consensus

Probab=94.00  E-value=3.6  Score=37.33  Aligned_cols=129  Identities=14%  Similarity=-0.009  Sum_probs=84.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         68 TCFKGAKSFQQCKEYLLKAANCYETN-KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        68 ~~y~~~g~~~~A~~~~~~a~~~~~~~-~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      .++...|+.......+++.+   .+. .+..--..+.--.+....+.|.|++|.+.-+++++|-+-    +  .-+.+-.
T Consensus       145 ~a~fy~G~~~~~k~ai~kIi---p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~----D--~Wa~Ha~  215 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKII---PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF----D--CWASHAK  215 (491)
T ss_pred             hHHHhccchhhhhhHHHHhc---cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc----c--hHHHHHH
Confidence            34556677666666655533   221 122212223333456677889999999999998876332    1  2234566


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      +.+++..+ +.++.++..+.-+..+..  ...++..|-..+..|++.+.|+.|++.|.+-+-
T Consensus       216 aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~  275 (491)
T KOG2610|consen  216 AHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDREIW  275 (491)
T ss_pred             HHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence            77888777 999999888776665522  233445667888999999999999999988654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.97  E-value=0.14  Score=30.60  Aligned_cols=32  Identities=9%  Similarity=-0.041  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      .+|..+|.+-...++|++|+.-|++++++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666665544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4507|consensus

Probab=93.94  E-value=0.11  Score=49.79  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=70.3

Q ss_pred             HHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q psy10061        146 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA  224 (325)
Q Consensus       146 lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  224 (325)
                      .|.++...+ ...|+.|++.|+.......+     -.+.+++.+++..|-...|..++.++|.+.      ....-.++.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~  681 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLS  681 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHh
Confidence            344444455 89999999999876655433     356789999999998889999999998875      223346778


Q ss_pred             HHHHHHhcCCHHHHHHHHHhh
Q psy10061        225 LVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       225 lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +|.+++...|..+|++.|+++
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a  702 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQA  702 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHH
Confidence            999999999999999999996

>KOG4322|consensus

Probab=93.93  E-value=3.9  Score=38.18  Aligned_cols=181  Identities=13%  Similarity=-0.035  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      +.++..-++..-+-+.++...+++..|.....+..--..+..+....+.++..++.++.+-+....+.-+.-.+.....+
T Consensus       266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            46666666666666666666677777777666655444455556666677777777777666666666665555555444


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA-------EYISRAARMCVRVKEFDKAADLIRQ  204 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~  204 (325)
                      -...-..+..--+++..+-..| +.+|+..+..|+....-.|-....+       .|+...+..+ ...+.+.+.+++++
T Consensus       346 y~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~  424 (482)
T KOG4322|consen  346 YSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDL  424 (482)
T ss_pred             hccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHH
Confidence            4443344444445555555556 7777777777776554333211111       1221111111 44556666666666


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        205 EIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       205 al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      +-.++.+++-......+.+-.+..|-..||
T Consensus       425 A~~~f~kL~~he~ildv~yf~A~~yn~lGd  454 (482)
T KOG4322|consen  425 AQSIFYKLGCHEKILDVTYFSAYQYNHLGD  454 (482)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHhhcC
Confidence            666665554322222222334444444444

>KOG4322|consensus

Probab=93.90  E-value=2.6  Score=39.26  Aligned_cols=148  Identities=12%  Similarity=-0.038  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      +...--.+.++...+.......+...+.....+.......+..-.+++..+.-.|.+..|......++......|-...-
T Consensus       313 ~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr  392 (482)
T KOG4322|consen  313 HSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR  392 (482)
T ss_pred             HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc
Confidence            44444455666666666667777667666666666667777777888888888999999999999999888877765544


Q ss_pred             HHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q psy10061        140 STVLEKGAKS-------LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD---KAADLIRQEIG  207 (325)
Q Consensus       140 a~~l~~lg~~-------~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~  207 (325)
                      ++++.-.+++       +.....+.+.+++++|-+++.+.+-...+.++..-.+..|-..|+.+   ++...|++...
T Consensus       393 ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  393 ARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            4433322222       22223889999999999999999888888888888999999998766   45555666544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.77  E-value=0.17  Score=31.09  Aligned_cols=28  Identities=18%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      ++..++.+|..+|++++|+++|++++..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566777777777777777777777765

>KOG2796|consensus

Probab=93.69  E-value=4  Score=35.84  Aligned_cols=131  Identities=10%  Similarity=0.074  Sum_probs=98.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         68 TCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        68 ~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      .++.-.|.|.-+.+.+.+..+-     ++...-.....+|.+-...||...|..+++..-..-.+.........+..+.+
T Consensus       185 ~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  185 NCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            4445566777777777776652     23333456778899999999999999999877766666666777788899999


Q ss_pred             HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      .+|-..+ +..|...|.+++..-.+     . +.+.++-+.+..-+|+..+|++..+.++.+.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~-----~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPR-----N-AVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCC-----c-hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9998876 99999999887653221     1 3456778888888999999999998887654

>KOG0545|consensus

Probab=93.61  E-value=4.5  Score=35.13  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ------GNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG  171 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~------g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~  171 (325)
                      .+..++..-|+-+.++|+|.+|...|+.|+...+.+      |++.-     ..                      +-+ 
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-----~e----------------------Ldk-  227 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-----LE----------------------LDK-  227 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-----HH----------------------HHH-
Confidence            355566666777777788888888887777665443      22210     00                      000 


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                           ...-.+.|...++...|+|-+++++..+.|...+      ..-.+|+..+.++...=+..+|..-|...
T Consensus       228 -----~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~------~nvKA~frRakAhaa~Wn~~eA~~D~~~v  290 (329)
T KOG0545|consen  228 -----MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP------GNVKAYFRRAKAHAAVWNEAEAKADLQKV  290 (329)
T ss_pred             -----hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence                 0012445666666666666666666666555321      11235566666666666666666666665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.58  E-value=1.1  Score=36.91  Aligned_cols=85  Identities=15%  Similarity=0.045  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHH
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF---DKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQL  230 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~  230 (325)
                      ++.|.+.++.....-..      -.+.+.+.|.++..+-++   .++.++++.++..+++.- -......++.++|.+|.
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            45555555555443222      146778888877776444   567777777777766531 11223356778888886


Q ss_pred             hc----CCHHHHHHHHHhh
Q psy10061        231 AR----GDTVAAEKAFKEW  245 (325)
Q Consensus       231 ~~----gd~~~A~~~~~~~  245 (325)
                      ..    .|..+|.++|+++
T Consensus        81 s~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             HHHHH---HHHHHHHHHHH
T ss_pred             HHHhhcCChHHHHHHHHHH
Confidence            54    5566666777665

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=93.55  E-value=0.13  Score=27.89  Aligned_cols=29  Identities=10%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      .++..+|.++..+|++++|+..|++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35678888889999999999988888764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0545|consensus

Probab=93.55  E-value=1.3  Score=38.37  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc------cHH------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE------HLL------AIGRLAVALVLVQLARGDTVAAEKAFK  243 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~------~~~~~~~~lg~~~~~~gd~~~A~~~~~  243 (325)
                      ..+..+++.-|+-+++.|+|.+|...|+.|+...+.+.      ++.      .....++|...|++..|||-++++...
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            34456888999999999999999999999998776532      221      123467899999999999999999988


Q ss_pred             hh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        244 EW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       244 ~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +. ....+.  .+++..-+.|+ ...++++++.-+.+
T Consensus       255 eiL~~~~~n--vKA~frRakAhaa~Wn~~eA~~D~~~  289 (329)
T KOG0545|consen  255 EILRHHPGN--VKAYFRRAKAHAAVWNEAEAKADLQK  289 (329)
T ss_pred             HHHhcCCch--HHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            87 333332  44565666676 46677776666554

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=93.45  E-value=3.2  Score=44.78  Aligned_cols=203  Identities=16%  Similarity=0.056  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----c-------------------
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-----E-------------------  152 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~-----~-------------------  152 (325)
                      ...++..-.+|++|...|++.+|+..|..|+++.+..+|+--.|.++.-++.+..     .                   
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            3567778888999999999999999999999999999998877777666543210     0                   


Q ss_pred             --------------------------------c-------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc
Q psy10061        153 --------------------------------L-------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV  192 (325)
Q Consensus       153 --------------------------------~-------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  192 (325)
                                                      .       . +++++.+|.++.....+---..-..++..+++.++...
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence                                            0       1 45555555555433222222233357778888888887


Q ss_pred             C--------------------CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----c-
Q psy10061        193 K--------------------EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-----G-  246 (325)
Q Consensus       193 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-----~-  246 (325)
                      .                    .-.++.++..+++.+....-....+...+..++.+|-..|=..+..=+++..     + 
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~  478 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG  478 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc
Confidence            7                    7788888888888764432233344456666666666655544433333321     0 


Q ss_pred             -----------------c---------c--CCC------h---HHHHHHHHHHHH-hcCCHHHHHHHhcC---hhhhccc
Q psy10061        247 -----------------N---------C--CEA------P---EVQTLEKLLQAF-DEEDPEGARQALND---PFIKHMD  285 (325)
Q Consensus       247 -----------------~---------~--~~~------~---e~~~l~~L~~a~-~~gd~~~~~~~~~~---~~~~~l~  285 (325)
                                       .         +  ...      +   +-.+|..++.+. ..+|...+..+..-   .....|+
T Consensus       479 l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls  558 (1185)
T PF08626_consen  479 LIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTYSPLLS  558 (1185)
T ss_pred             cCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhCC
Confidence                             0         0  000      1   224566666655 48888887776553   3344453


Q ss_pred             -HHHHHHhhcCCCCC
Q psy10061        286 -VEYSRLARDLPLPS  299 (325)
Q Consensus       286 -~~~~~~~~~l~~~~  299 (325)
                       .+..+|...+..+.
T Consensus       559 ~~EQ~~L~~~l~~~~  573 (1185)
T PF08626_consen  559 PDEQIRLANNLQRTS  573 (1185)
T ss_pred             HHHHHHHHHHHHHHh
Confidence             45666666666543

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.30  E-value=0.087  Score=30.58  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         83 LLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVE  120 (325)
Q Consensus        83 ~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~  120 (325)
                      |++++++....      +.++.++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence            55666665432      468999999999999999886

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.12  E-value=3.4  Score=36.75  Aligned_cols=128  Identities=12%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      |....+..++.+..+.|...+.+|.    +.+..  .-.+|...|.+ |...+ .+.|...|+.++..+....      .
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~   71 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------D   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------H
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHH----cCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------H
Confidence            4445555566666778888888885    22221  12357777777 33234 7779999999999887642      4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+......++..++.+.|..+|++++..   +........+|......-...||.+......+++
T Consensus        72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   72 FWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5556667788899999999999998864   2222212345566666667778888888888775

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.78  E-value=1.3  Score=33.33  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHHHhcCCChhh
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNR----EAASTVLEKGAKSLEELK-----SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~----~~aa~~l~~lg~~~~~~~-----~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      +.-+...|++-+|++..+..+....+..+.    ..++..+..++...+..+     .--++++|.++..+.+.      
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~------   76 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD------   76 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh------
Confidence            344556688888888888877665555432    233344444444444332     23455555555544332      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      .+..+..+|.-+-...-|.+++.-.+++|.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            244555565555445556666665555554

>KOG4814|consensus

Probab=92.67  E-value=1  Score=43.93  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLL  261 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~  261 (325)
                      +-+-+.-+.+..+|..++++|...+..+..-.....-+....++..||+...+.++|.++++++..|++..-...+.-+.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            34445567788999999999999987655332111225677899999999999999999999996665322211122222


Q ss_pred             HHHhcCCHHHHHHHhcC
Q psy10061        262 QAFDEEDPEGARQALND  278 (325)
Q Consensus       262 ~a~~~gd~~~~~~~~~~  278 (325)
                      .+...|..+++..++..
T Consensus       437 ~~~~E~~Se~AL~~~~~  453 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQK  453 (872)
T ss_pred             HHHHhcchHHHHHHHHH
Confidence            23345666666666554

>KOG0686|consensus

Probab=92.52  E-value=9  Score=35.65  Aligned_cols=166  Identities=15%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      ++.|+..+-.+..-..+..+|.-|..-| .+.|+++|-++-+.....+.   .+..+.++-.|-+.+|+|..-..+-.++
T Consensus       137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A  213 (466)
T KOG0686|consen  137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKA  213 (466)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence            3445544444555667899999999887 99999999998887766533   3556778888899999999888887777


Q ss_pred             HHHHHHccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccC----CChHHHHHHHHHHHHhcCCHHHHH-HHh
Q psy10061        206 IGYHQESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCC----EAPEVQTLEKLLQAFDEEDPEGAR-QAL  276 (325)
Q Consensus       206 l~~~~~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~----~~~e~~~l~~L~~a~~~gd~~~~~-~~~  276 (325)
                      ........+  ......+.-..|++.+..+.|..|..+|-..  +..+    -+...-.+.....|+..-|..... ...
T Consensus       214 ~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi  293 (466)
T KOG0686|consen  214 ESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVI  293 (466)
T ss_pred             HhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHH
Confidence            654211000  0011122334688888888999999999886  2211    122334556666777777777776 444


Q ss_pred             cC---hhhhcccHHHHHHhhcC
Q psy10061        277 ND---PFIKHMDVEYSRLARDL  295 (325)
Q Consensus       277 ~~---~~~~~l~~~~~~~~~~l  295 (325)
                      +.   ..|-.+.+.+.+|+.+.
T Consensus       294 ~n~~Fk~flel~Pqlr~il~~f  315 (466)
T KOG0686|consen  294 KNESFKLFLELEPQLREILFKF  315 (466)
T ss_pred             cchhhhhHHhcChHHHHHHHHH
Confidence            44   45666777777766554

>KOG1915|consensus

Probab=92.33  E-value=11  Score=36.03  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++...+..-+++.+.+.|...+-.|+..++.       ..++-....+-+..++++.....|+++
T Consensus       406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkf  463 (677)
T KOG1915|consen  406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKF  463 (677)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4444444444555555555555554444322       122233334445556666666666664

>smart00028 TPR Tetratricopeptide repeats

Probab=91.85  E-value=0.3  Score=26.29  Aligned_cols=28  Identities=18%  Similarity=0.083  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      ++.++|.+|...+++++|+.++++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            5667777777778888888777777654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.61  E-value=9.4  Score=33.90  Aligned_cols=88  Identities=10%  Similarity=0.042  Sum_probs=67.2

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhc---C----C-hHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK-SFQQCKEYLLKAANCYETN---K----S-AYH   98 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g-~~~~A~~~~~~a~~~~~~~---~----~-~~~   98 (325)
                      .|+++.|.-++.|+....... .  ......-++.+...|.-....+ ++++|...+.+|.++....   +    + ..-
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~-~--~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSL-D--PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcC-C--cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            368999999999998877311 0  2445666788888898888888 9999999999999997541   1    1 244


Q ss_pred             HHHHHHHHHHHHHHcCCHHH
Q psy10061         99 AAKHLEQAIMMCKELNDLTD  118 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~e  118 (325)
                      ...++..++.+|...+.++.
T Consensus        83 r~~iL~~La~~~l~~~~~~~  102 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYES  102 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHH
Confidence            67788889999998887653

It is also involved in sporulation [].

>KOG1538|consensus

Probab=91.55  E-value=14  Score=36.65  Aligned_cols=132  Identities=13%  Similarity=0.043  Sum_probs=60.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC  189 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~  189 (325)
                      |...|..++--.+.++-.+-.+....+..||+.+...|..-.....----.+..-++++.++.+..  ..+.+..++..+
T Consensus       680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~--ere~l~~~a~yl  757 (1081)
T KOG1538|consen  680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA--EREPLLLCATYL  757 (1081)
T ss_pred             HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh--hhhHHHHHHHHH
Confidence            444455555555555555555566666666665554443221110000001122333444433221  123455555555


Q ss_pred             HHcCCHHHHHHHHHHHHH-------------------HHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        190 VRVKEFDKAADLIRQEIG-------------------YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       190 ~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+..+.-|.+.|++.-+                   ++.+..  .-....|+--|.-+...+++++|.+.|-++
T Consensus       758 k~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hP--e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  758 KKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHP--EFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCc--cccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            555555555555544322                   222211  112233445555566667777777777666

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.35  E-value=0.84  Score=38.23  Aligned_cols=58  Identities=17%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061        140 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       140 a~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  199 (325)
                      +.....+|.+|...+.++++.+|.+++++.....+..  .+++..|+.+|.++|+++.|-
T Consensus       141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence            5677788888988889999999999999887764332  467888999999999988874

>KOG4521|consensus

Probab=91.35  E-value=22  Score=37.63  Aligned_cols=234  Identities=12%  Similarity=0.112  Sum_probs=128.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH------HcCC----HHHHHHHHHHHHHHHHHcCCH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK------ELND----LTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~------~~g~----~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      |.+|...|...+|+.+|.+|..-.-+-       +++..+..-..      ..|+    ...|+.||.+++.++.+.+-.
T Consensus       927 g~~yl~tge~~kAl~cF~~a~Sg~ge~-------~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~  999 (1480)
T KOG4521|consen  927 GIAYLGTGEPVKALNCFQSALSGFGEG-------NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA  999 (1480)
T ss_pred             heeeecCCchHHHHHHHHHHhhccccH-------HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence            445667788888888888876544321       12333221100      1122    234678888888888888777


Q ss_pred             HHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH---
Q psy10061        137 EAASTVLEKGAKSLEEL------------KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL---  201 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~------------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~---  201 (325)
                      +.+...-..+-......            ++.--+.++-+|....-+..+......|++++-.++.+.|+++.-.++   
T Consensus      1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfi 1079 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFI 1079 (1480)
T ss_pred             HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCcc
Confidence            66555433332222221            133344556677766666666666778999999999999988753331   


Q ss_pred             --HHHHHH-HHHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH--HHHHHHHHHHhcCCHHHHH
Q psy10061        202 --IRQEIG-YHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV--QTLEKLLQAFDEEDPEGAR  273 (325)
Q Consensus       202 --~~~al~-~~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~--~~l~~L~~a~~~gd~~~~~  273 (325)
                        -++... +....  ..+....++|.-+=.-|...+++.+|-.+.-++ ..+.....+  .+|.+-++.        ..
T Consensus      1080 gl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~nc--------ll 1151 (1480)
T KOG4521|consen 1080 GLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRRNC--------LL 1151 (1480)
T ss_pred             chHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhhhH--------HH
Confidence              122222 11111  123334445554555567889998887776665 333211100  123222222        22


Q ss_pred             HHhcChhhhcccHHHHHHhhcCCCCCCCCCCCcccccccccCCCcCC
Q psy10061        274 QALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVS  320 (325)
Q Consensus       274 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  320 (325)
                      .+++.  ..-++++...|+.  ++||...-.|- ++.+++--|-++|
T Consensus      1152 aaLNc--l~Lv~p~yawi~~--Pvpgd~~d~pi-~sd~r~eegkl~s 1193 (1480)
T KOG4521|consen 1152 AALNC--LSLVEPDYAWIIY--PVPGDDEDEPI-ESDSRGEEGKLPS 1193 (1480)
T ss_pred             HHHHH--HHhcCCCcceeec--CCCCccccccc-cCcCcCCCCCCCC
Confidence            23333  2233444444443  89999888884 6666666666666

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.30  E-value=0.33  Score=26.14  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Q psy10061        222 AVALVLVQLARGDTVAAEKAFK  243 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~  243 (325)
                      ...++.++..+||+++|...++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3455666666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.79  E-value=14  Score=34.35  Aligned_cols=167  Identities=11%  Similarity=0.070  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE---LNDLTDVENLAKQAATLFLEQGNRE  137 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~---~g~~~eA~~~~~~A~~~~~~~g~~~  137 (325)
                      +.-..+...|+..++|+.-+......-.+ ... +.......-...+.+..+   .|+.++|+.....++.-  ..+   
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~---  214 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DEN---  214 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCC---
Confidence            33445556677777776655544332222 000 111122233444555556   78999999888876322  111   


Q ss_pred             HHHHHHHHHHHHHhcc---------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q psy10061        138 AASTVLEKGAKSLEEL---------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI-  206 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~---------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-  206 (325)
                      ....++.-+|.+|...         . .++|+.+|.++.++-+   +.    ..-.|++.++...|.-.+...-.++.. 
T Consensus       215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~  287 (374)
T PF13281_consen  215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---DY----YSGINAATLLMLAGHDFETSEELRKIGV  287 (374)
T ss_pred             CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---cc----cchHHHHHHHHHcCCcccchHHHHHHHH
Confidence            2233666777776543         1 7999999999977652   21    122356666666665433332223322 


Q ss_pred             HH---HHH------cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        207 GY---HQE------SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       207 ~~---~~~------~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+   ..+      ..+++..+    .+..+.+..||+++|..+++++
T Consensus       288 ~l~~llg~kg~~~~~~dYWd~A----Tl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  288 KLSSLLGRKGSLEKMQDYWDVA----TLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             HHHHHHHhhccccccccHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Confidence            11   111      12344443    3566777799999999999996

>KOG1920|consensus

Probab=90.75  E-value=16  Score=38.52  Aligned_cols=40  Identities=10%  Similarity=0.164  Sum_probs=24.0

Q ss_pred             ccchhhhhhHHHHHHhhc---hhccccc--cccHHHHHHHHHHHH
Q psy10061          3 SDRKKEEGMEYVKSAEKH---SLSTMTS--DRKKEEGMEYVKSAE   42 (325)
Q Consensus         3 ~~~~~~~~~~~~~~ae~~---~~~~~~~--~~~~~eA~~l~~~A~   42 (325)
                      |+++|.|=.+++.+=+|+   ...|-..  -++|++|+.++.++.
T Consensus       863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~  907 (1265)
T KOG1920|consen  863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG  907 (1265)
T ss_pred             hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence            677888888887776632   2233221  146777777665544

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.62  E-value=15  Score=34.64  Aligned_cols=171  Identities=13%  Similarity=-0.039  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL-------TDVENLAKQAATLFLEQ  133 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~-------~eA~~~~~~A~~~~~~~  133 (325)
                      ....++|+++..+++|+-|...|..+..=+..-..+.-.|.+.+-++.+..-.+..       ++...+++.|+..|...
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~  288 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS  288 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence            45567999999999999999999988876665555666777888888777766643       36778899999999883


Q ss_pred             -----CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHH--HHcCCHHHHHHHHH
Q psy10061        134 -----GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH--GEDNYKQAAEYISRAARMC--VRVKEFDKAADLIR  203 (325)
Q Consensus       134 -----g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~--~~~~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~  203 (325)
                           ....-+.++....+.++...+ +.++...+-+.....-  ..+ ..+.+-.+.+++.+|  ........-..-++
T Consensus       289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~a~~~~~~~~~~~~~~~~r~R  367 (414)
T PF12739_consen  289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR-PFGSALLLEQAAYCYASLRSNRPSPGLTRFR  367 (414)
T ss_pred             hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence                 223466667777777776665 6666665555554321  111 111445667777777  22110000000000


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                                   --+--+.-.|.-|...|....|..+|.++
T Consensus       368 -------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a  396 (414)
T PF12739_consen  368 -------------KYAFHMVLAGHRYSKAGQKKHALRCYKQA  396 (414)
T ss_pred             -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                         01111233566778889999999999987

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.42  E-value=2.9  Score=37.23  Aligned_cols=134  Identities=10%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061         63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE-LNDLTDVENLAKQAATLFLEQGNREAAST  141 (325)
Q Consensus        63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~-~g~~~eA~~~~~~A~~~~~~~g~~~~aa~  141 (325)
                      |.+.....+..+..+.|...|.+|.    +.+.  ..-.+|...|.+... .++...|...|+.++..+....++     
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~-----   72 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF-----   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH-----
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH-----
Confidence            4455556666666888999998885    2211  122467777888555 567777999999999887665543     


Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                       +..-...+...+ .+.+...|++++...   ........++......=.+.|+.+....+.+++.+.+.+
T Consensus        73 -~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   73 -WLEYLDFLIKLNDINNARALFERAISSL---PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence             333334444555 899999999998652   222223457888888888889999999999988887655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1550|consensus

Probab=89.63  E-value=15  Score=36.13  Aligned_cols=119  Identities=18%  Similarity=0.071  Sum_probs=76.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-----DLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-----~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      .+|.+.|..+|..++.-+.+.- ..+-..+...+|.+|.+-.     ++..|..+|.++.+    .|.+.    +...+|
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~~~----a~~~lg  332 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGNPD----AQYLLG  332 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh----cCCch----HHHHHH
Confidence            3578888888888877322110 0111235677888887732     56677777777753    35544    456777


Q ss_pred             HHHhcc----CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q psy10061        148 KSLEEL----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----KEFDKAADLIRQEIGY  208 (325)
Q Consensus       148 ~~~~~~----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~  208 (325)
                      .++...    ++..|.++|..|...    |.    ..+..+++.+|..-    .+...|+.++.++.+.
T Consensus       333 ~~~~~g~~~~d~~~A~~yy~~Aa~~----G~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  333 VLYETGTKERDYRRAFEYYSLAAKA----GH----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             HHHHcCCccccHHHHHHHHHHHHHc----CC----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence            777643    377888888888642    32    34666777776543    4888899999988764

>KOG0687|consensus

Probab=89.45  E-value=16  Score=33.08  Aligned_cols=112  Identities=12%  Similarity=0.064  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                      -....++..+.+..|-+.+ -+.|.+.+++..+-.-..|......-+..++|.+|....-   --+..+++-.+.++-|+
T Consensus       100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l---V~~~iekak~liE~GgD  176 (393)
T KOG0687|consen  100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL---VTESIEKAKSLIEEGGD  176 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH---HHHHHHHHHHHHHhCCC
Confidence            3455677888888888776 8889998888887766677666666677788888865443   33344555566666676


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061        215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE  250 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~  250 (325)
                      .....++-.--|.-....-++.+|-..|-++ +.|.+
T Consensus       177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            5555455555677777888999999999997 66643

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.11  E-value=0.72  Score=24.77  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      +...+|.++..+|++++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            56689999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.07  E-value=6.1  Score=27.77  Aligned_cols=62  Identities=16%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      ...+..+|+..+.+++.....   ..+.-.++--+..+|.+.|+|.+.+.+--.=+++.++..++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            556667777777777655543   33455566777788888999999998888888887777664

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.61  E-value=6.3  Score=33.12  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  239 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~  239 (325)
                      ++....+|..|. ..+.++|+.++.+++++........  ...+..++.++..+|+++.|.
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence            456677887776 7799999999999999876543332  346788999999999999874

>KOG4507|consensus

Probab=88.35  E-value=0.52  Score=45.47  Aligned_cols=94  Identities=17%  Similarity=0.075  Sum_probs=71.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      .+|..++-+|+...|+.|+..|+...-...+.     .+.+++.++...+ ...|..++.+++.+.-..      .-.+.
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-----~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------pl~~~  680 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-----PLVNLANLLIHYGLHLDATKLLLQALAINSSE------PLTFL  680 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcc-----cHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------chHHH
Confidence            34455566799999999999998665444443     4677888877777 677888888888876221      24667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      .+|..|..+.+.+.|++.|+.|+..-
T Consensus       681 ~~g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  681 SLGNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             hcchhHHHHhhhHHHHHHHHHHHhcC
Confidence            89999999999999999999998753

>KOG3024|consensus

Probab=88.26  E-value=15  Score=32.56  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Q psy10061         93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE  172 (325)
Q Consensus        93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~  172 (325)
                      .|++..+-..|.-+..-|.++..++.|++..-..+..+-+.+...-++.....+..+++.-.....+-..          
T Consensus        19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~----------   88 (312)
T KOG3024|consen   19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKV----------   88 (312)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHH----------
Confidence            4677777788888888888888888888877777666666666666666666666555542111111111          


Q ss_pred             CChhhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        173 DNYKQAAEYISRAARMCVRVKEFDKA-ADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       173 ~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                                -+++.+....+.-... ..+.++++.-..+. +.+.+-+..+..+|...+.-+++..|..+|-.+
T Consensus        89 ----------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~  153 (312)
T KOG3024|consen   89 ----------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS  153 (312)
T ss_pred             ----------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence                      2334444444322222 23344455444443 223334456778899999999999999998874

>PRK11906 transcriptional regulator; Provisional

Probab=88.17  E-value=24  Score=33.54  Aligned_cols=149  Identities=7%  Similarity=-0.062  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      ..|...|.+|+....   -...-+.+|.-++.||...         .+-.+|.++-++|+++-  ..|    +.++..+|
T Consensus       275 ~~Al~lf~ra~~~~~---ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~D----a~a~~~~g  345 (458)
T PRK11906        275 YRAMTIFDRLQNKSD---IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVD----GKILAIMG  345 (458)
T ss_pred             HHHHHHHHHHhhccc---CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCC----HHHHHHHH
Confidence            455666666652211   1122345666666666532         12334555555555441  123    33677788


Q ss_pred             HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      .++-..+ ++.|+..+++|+.+....      +.++...|.+..-.|+.++|++++++++.+.     |...+.....+.
T Consensus       346 ~~~~~~~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~  414 (458)
T PRK11906        346 LITGLSGQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHNEKIEEARICIDKSLQLE-----PRRRKAVVIKEC  414 (458)
T ss_pred             HHHHhhcchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHH
Confidence            8766555 999999999999886543      5688889999999999999999999998863     222222333444


Q ss_pred             HHHHhcCCHHHHHHHHHhh
Q psy10061        227 LVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~  245 (325)
                      +-.+.....+.|+..|-+-
T Consensus       415 ~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        415 VDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHcCCchhhhHHHHhhc
Confidence            4223344577888877664

>KOG1550|consensus

Probab=88.00  E-value=13  Score=36.72  Aligned_cols=118  Identities=17%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK-----SFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      .+.+.|+.+++.|.+.+++...  ++ +   ...+..+|.+|....     ++..|..+|.++++.    |++    .+.
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~--~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~  328 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAAT--KG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQ  328 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--hc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----CCc----hHH
Confidence            5788888888888774333110  01 0   012345566665532     667788888887643    332    356


Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHH
Q psy10061        104 EQAIMMCKELN---DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-----KSDAALTLYSRAADV  168 (325)
Q Consensus       104 ~~~~~~y~~~g---~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-----~~~~A~~~y~~Al~~  168 (325)
                      ..+|.+|..-.   +..+|.++|..|.    +.|+..    +..+++.+|...     +...|..+|.++.+.
T Consensus       329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa----~~G~~~----A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  329 YLLGVLYETGTKERDYRRAFEYYSLAA----KAGHIL----AIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             HHHHHHHHcCCccccHHHHHHHHHHHH----HcCChH----HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence            67777777643   4568888888875    345543    577788888754     389999999999864

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.52  E-value=24  Score=32.78  Aligned_cols=125  Identities=10%  Similarity=0.037  Sum_probs=68.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTV  142 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~  142 (325)
                      ..|+.++|.+.+..++.--..     .....+.-.|.+|.+.         ..+++|+.+|.++-++-   .++..    
T Consensus       194 ~~gdre~Al~il~~~l~~~~~-----~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~----  261 (374)
T PF13281_consen  194 KPGDREKALQILLPVLESDEN-----PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYS----  261 (374)
T ss_pred             cCCCHHHHHHHHHHHHhccCC-----CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccc----
Confidence            378888888888776333221     2234666677776642         24677888888776553   33221    


Q ss_pred             HHHHHHHHhccC--H---HHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK--S---DAALTLYSRAADVAHGEDNYK--QAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       143 l~~lg~~~~~~~--~---~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      -.|++.++...+  .   .+..+.-.+.-.+..+.+...  .--..+-.++.+.+-.|++++|+..+++++.+
T Consensus       262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            123333333322  1   121121112112222222211  11233456777888899999999999998875

>KOG3783|consensus

Probab=87.15  E-value=30  Score=33.47  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHhhcc-cCC
Q psy10061        174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ-ESEHLLAIGRLAVALVLVQLARGD-TVAAEKAFKEWGN-CCE  250 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~~~~~gd-~~~A~~~~~~~~~-~~~  250 (325)
                      +.....--+.-+|.++..+|+...|..+|...++-.. ...+.+..+.+++.++..|+.+|. ..++..++.++.. +.+
T Consensus       444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            4444444556789999999999999999999887533 234677788899999999999999 9999999999933 323


Q ss_pred             Ch-HHHHHHHH
Q psy10061        251 AP-EVQTLEKL  260 (325)
Q Consensus       251 ~~-e~~~l~~L  260 (325)
                      .+ |.++.-++
T Consensus       524 Y~lenRLh~rI  534 (546)
T KOG3783|consen  524 YELENRLHMRI  534 (546)
T ss_pred             cchhhHHHHHH
Confidence            32 44444333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.14  E-value=1.5  Score=36.12  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK-GAKSFQQCKEYLLKAANCYETN   93 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~-~~g~~~~A~~~~~~a~~~~~~~   93 (325)
                      .++.+++++|...+...+.. .|++.+|.=+.-.+-..+- ...+..+|..+|.+|.+++.+.
T Consensus        45 ~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   45 PESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            45555666655555432211 3666655444333332222 2345567778888888777754

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4814|consensus

Probab=87.10  E-value=4.7  Score=39.63  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=71.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        143 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       143 l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      ++.+...+...+|.-++++|...+..+........-+...+.+..+|..+.+.+.|++++++|-+.-+++  +..+    
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--~l~q----  431 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--PLCQ----  431 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--HHHH----
Confidence            4445556666679999999999998877664333337899999999999999999999999986653332  1111    


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        223 VALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .-+-.+....|...+|+.+....
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKI  454 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHH
Confidence            23445566778888898888875

>KOG2114|consensus

Probab=86.35  E-value=20  Score=36.44  Aligned_cols=137  Identities=11%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHH--------------------HHHHHHhcCCHHHHHHH
Q psy10061         23 STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK--------------------AATCFKGAKSFQQCKEY   82 (325)
Q Consensus        23 ~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~--------------------a~~~y~~~g~~~~A~~~   82 (325)
                      ++.++.|++++|...|.++...+..+.-  ...|.+|-..++-                    +.++|.++++.++=.++
T Consensus       376 d~Ly~Kgdf~~A~~qYI~tI~~le~s~V--i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ef  453 (933)
T KOG2114|consen  376 DYLYGKGDFDEATDQYIETIGFLEPSEV--IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEF  453 (933)
T ss_pred             HHHHhcCCHHHHHHHHHHHcccCChHHH--HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHH
Confidence            3566777899999999998877765310  0111122111111                    23566666655433222


Q ss_pred             ------------HHHHHHHHHhcCChHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         83 ------------LLKAANCYETNKSAYHAAKHLEQA-------IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        83 ------------~~~a~~~~~~~~~~~~aa~~~~~~-------~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                                  ++.++++.++.+-...+-..-.+.       =.++...++|++|+.+....        .++.+..++
T Consensus       454 I~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl--------p~~e~l~~l  525 (933)
T KOG2114|consen  454 ISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL--------PISELLRTL  525 (933)
T ss_pred             HhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC--------CHHHHHHHH
Confidence                        344555555544322221111111       12344556666666654432        256667777


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHH
Q psy10061        144 EKGAKSLEELKSDAALTLYSRAADVA  169 (325)
Q Consensus       144 ~~lg~~~~~~~~~~A~~~y~~Al~~~  169 (325)
                      .+-|.++....+++-...+-+-....
T Consensus       526 ~kyGk~Ll~h~P~~t~~ili~~~t~~  551 (933)
T KOG2114|consen  526 NKYGKILLEHDPEETMKILIELITEL  551 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHhhc
Confidence            88888887777666555554444433

>KOG0686|consensus

Probab=86.26  E-value=17  Score=33.89  Aligned_cols=110  Identities=13%  Similarity=0.026  Sum_probs=66.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q psy10061         88 NCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-KSDAALTLYSRAA  166 (325)
Q Consensus        88 ~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al  166 (325)
                      +.++...-....-.++..++.-|...|+++.|+++|-++-+.+...+..-   ..+.++-.+-... ++..-..+-.+|.
T Consensus       138 k~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvI---nm~ln~i~VSI~~~nw~hv~sy~~~A~  214 (466)
T KOG0686|consen  138 KSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVI---NMCLNLILVSIYMGNWGHVLSYISKAE  214 (466)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHH---HHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence            33443334456778999999999999999999999999888877766543   3344433332222 2333333333332


Q ss_pred             HH-------HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        167 DV-------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       167 ~~-------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      ..       .+..+   ....|+  .|.+...+++|..|..+|-.+
T Consensus       215 st~~~~~~~~q~v~---~kl~C~--agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  215 STPDANENLAQEVP---AKLKCA--AGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hCchhhhhHHHhcC---cchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence            22       11111   113344  555566667999999887554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.09  E-value=14  Score=35.19  Aligned_cols=102  Identities=17%  Similarity=0.094  Sum_probs=55.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHcCCHHHHHHHH
Q psy10061         70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT------LFLEQGNREAASTVL  143 (325)
Q Consensus        70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~------~~~~~g~~~~aa~~l  143 (325)
                      ...+|+.+.|.+       +..++.++.    .+.++|.....+|+++-|..+|+++-+      +|...|+..    -+
T Consensus       328 Al~lg~L~~A~~-------~a~~~~~~~----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~----~L  392 (443)
T PF04053_consen  328 ALQLGNLDIALE-------IAKELDDPE----KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDRE----KL  392 (443)
T ss_dssp             HHHCT-HHHHHH-------HCCCCSTHH----HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HH----HH
T ss_pred             HHhcCCHHHHHH-------HHHhcCcHH----HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHH----HH
Confidence            335555555444       444444433    788888888888988888888877533      344555543    34


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD  200 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  200 (325)
                      .+++.+....+ +..|..++--.       |+       ...+..++.+.|++++|.-
T Consensus       393 ~kl~~~a~~~~~~n~af~~~~~l-------gd-------~~~cv~lL~~~~~~~~A~~  436 (443)
T PF04053_consen  393 SKLAKIAEERGDINIAFQAALLL-------GD-------VEECVDLLIETGRLPEAAL  436 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH-------T--------HHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHc-------CC-------HHHHHHHHHHcCCchHHHH
Confidence            55555554443 44443333111       11       1234456677777777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.09  E-value=3.7  Score=26.46  Aligned_cols=29  Identities=14%  Similarity=0.124  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +++..++..+.++|+|.+|..+.+..|++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            45556666666666666666666666654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.61  E-value=26  Score=31.30  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             HHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHHHHHcc
Q psy10061        149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ---------------EIGYHQESE  213 (325)
Q Consensus       149 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------al~~~~~~~  213 (325)
                      ..+..++.+|...+..++....+.      .++...++.+|...|+.+.|...+..               -+++..+..
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence            333444666777777766665544      23445566666666666655555432               122222111


Q ss_pred             --------------cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHHhcCCH
Q psy10061        214 --------------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAFDEEDP  269 (325)
Q Consensus       214 --------------~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~~~gd~  269 (325)
                                    ++.. ...-+.++..+...|+++.|.+.+-..    ..|.+..-.+.+..+.++.+.+|+
T Consensus       218 ~~~~~~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         218 ATPEIQDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             cCCCHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence                          1111 234467899999999999999998886    456566566677788888888888

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.34  E-value=2.5  Score=27.26  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a  263 (325)
                      +++.+++.+...|+|..|..+.+.. ..-++..++..|..+++-
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            3566889999999999999999998 444566677777766553

>KOG2053|consensus

Probab=85.04  E-value=50  Score=34.03  Aligned_cols=87  Identities=11%  Similarity=0.049  Sum_probs=55.1

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      ++++++|.....+-.+...        +-.- +..+.  +....++|..++|..++ ++.......+     -..+.-+-
T Consensus        22 ~~qfkkal~~~~kllkk~P--------n~~~-a~vLk--aLsl~r~gk~~ea~~~L-e~~~~~~~~D-----~~tLq~l~   84 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHP--------NALY-AKVLK--ALSLFRLGKGDEALKLL-EALYGLKGTD-----DLTLQFLQ   84 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCC--------CcHH-HHHHH--HHHHHHhcCchhHHHHH-hhhccCCCCc-----hHHHHHHH
Confidence            4578888777776554442        2221 11121  33445789999998554 3333333222     23566678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                      .+|++++++++|..+|++++.-+-
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhhCC
Confidence            899999999999999999975543

>PRK10941 hypothetical protein; Provisional

Probab=83.90  E-value=13  Score=32.83  Aligned_cols=85  Identities=9%  Similarity=0.086  Sum_probs=64.2

Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPE  253 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e  253 (325)
                      ..-....++++-.+|.+.++++.|+.+.+..+.+.+..  +    .-+...|.+|...|.+..|..-++.+ ........
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d--p----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPED--P----YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            33445677888899999999999999999988875432  2    12245799999999999999999998 66666666


Q ss_pred             HHHHHHHHHHHh
Q psy10061        254 VQTLEKLLQAFD  265 (325)
Q Consensus       254 ~~~l~~L~~a~~  265 (325)
                      ..++...+..+.
T Consensus       251 a~~ik~ql~~l~  262 (269)
T PRK10941        251 SEMIRAQIHSIE  262 (269)
T ss_pred             HHHHHHHHHHHh
Confidence            666666655554

>KOG2908|consensus

Probab=83.80  E-value=34  Score=31.18  Aligned_cols=179  Identities=14%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ-AAEYISRAAR  187 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~lg~  187 (325)
                      ..+.++.++|+++.++..+-......++........++.++-..+ ..++.+...+.-........... .-..+..++.
T Consensus        85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss  164 (380)
T KOG2908|consen   85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS  164 (380)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence            344557777777777777777766666666666777777766555 77777766666666665555433 3344555554


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHHHH--Hccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---ccc---CCChHHHH
Q psy10061        188 MCV-RVKEFDKAADLIRQEIGYHQ--ESEH--LLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNC---CEAPEVQT  256 (325)
Q Consensus       188 ~~~-~~g~~~~A~~~~~~al~~~~--~~~~--~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~---~~~~e~~~  256 (325)
                      -|+ ..|++...   |+.+|....  ++.+  ........+.+|..-+--+.+    -.|-+.   |.|   .+ -+.+=
T Consensus       165 qYyk~~~d~a~y---Yr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~i----yNfGELL~HPilesL~g-T~~eW  236 (380)
T KOG2908|consen  165 QYYKKIGDFASY---YRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENI----YNFGELLAHPILESLKG-TNREW  236 (380)
T ss_pred             HHHHHHHhHHHH---HHHHHHHhccccccccCHHHHHHHHHHHHHHHHhcccc----ccHHHHHhhHHHHHhcC-CcHHH
Confidence            443 33555533   333333211  1111  111111112233332221111    011111   222   22 22344


Q ss_pred             HHHHHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061        257 LEKLLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       257 l~~L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~  296 (325)
                      |.++..|+..||...|.+..+. ..+.-+......+..|+.
T Consensus       237 L~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~qKI~  277 (380)
T KOG2908|consen  237 LKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLLQKIR  277 (380)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence            6677888889999999988766 333344455555555554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.14  E-value=19  Score=27.74  Aligned_cols=67  Identities=7%  Similarity=-0.149  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061         64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSA---------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus        64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      ...|+...+.+++-.++-+|++|+.+..++...         .--.....|++..++.+|+.+-.+.|++-|.+-.
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            345555666677777777777777777665311         1123456678888888888888888887776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.90  E-value=33  Score=32.78  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061         63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV  142 (325)
Q Consensus        63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~  142 (325)
                      .++++......|-++.|+..-.          |+..    -.   ++..+.|+++.|.+       +..+..+..    .
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~----------D~~~----rF---eLAl~lg~L~~A~~-------~a~~~~~~~----~  349 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVT----------DPDH----RF---ELALQLGNLDIALE-------IAKELDDPE----K  349 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-----------HHH----HH---HHHHHCT-HHHHHH-------HCCCCSTHH----H
T ss_pred             HHHHHHHHHHCCCHHHHHhhcC----------ChHH----Hh---HHHHhcCCHHHHHH-------HHHhcCcHH----H
Confidence            4555555666666666665422          2211    01   12344566555544       334444433    6


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHH------HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADV------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLI  202 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  202 (325)
                      +..||......+ ++-|.++|+++-+.      +-..|+.    +-+.+++.+....|++.-|...+
T Consensus       350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af~~~  412 (443)
T PF04053_consen  350 WKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR----EKLSKLAKIAEERGDINIAFQAA  412 (443)
T ss_dssp             HHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHHHHH
Confidence            778888877766 88888888776442      3333443    45667788878888887776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3364|consensus

Probab=82.26  E-value=16  Score=28.77  Aligned_cols=80  Identities=9%  Similarity=0.018  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      .++..+++++++...+.+   +-+.+++..+.    ..++...-.+.+-++.-|...++|+.++.+.+.. +.-.++.++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            357778898888876544   55666665543    1233333345566888899999999999999987 555567777


Q ss_pred             HHHHHHHH
Q psy10061        255 QTLEKLLQ  262 (325)
Q Consensus       255 ~~l~~L~~  262 (325)
                      ..|...++
T Consensus       108 ~~Lk~~ie  115 (149)
T KOG3364|consen  108 LELKETIE  115 (149)
T ss_pred             HHHHHHHH
Confidence            77765544

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=82.08  E-value=37  Score=30.36  Aligned_cols=128  Identities=9%  Similarity=-0.059  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10061        119 VENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK  197 (325)
Q Consensus       119 A~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  197 (325)
                      -++-+.+.++-.+..+-....+++..++|..|-+.. .+.+.+++.+.+.-.-..|-.....-+..++|.+|..+.=..+
T Consensus        94 ki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e  173 (412)
T COG5187          94 KIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEE  173 (412)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHH
Confidence            334444444433443334556788999999998775 8888888888776665556555555566778888866554444


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061        198 AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC  249 (325)
Q Consensus       198 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~  249 (325)
                      -++.   +-.+.++-++.....++-.--|.-.+..-++.+|-..+..+ +.|.
T Consensus       174 ~lE~---~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         174 SLEV---ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHH---HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            4433   33344455554434444444566666667788888888886 6664

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.02  E-value=3.2  Score=43.17  Aligned_cols=96  Identities=6%  Similarity=-0.027  Sum_probs=64.6

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK----GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~----~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      +.=-|.++|.+|+..+++.-.+| |.=.+.-++--++|....    ..|+.    +-|.+|+.-+.++.+..++---|..
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  557 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLG  557 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHh
Confidence            34457788888887777632222 222333344445554432    22332    5677888888888777777777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      -+.+|.++|+++|-+++|..|+.-|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~  582 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRY  582 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            8999999999999999999998644

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.01  E-value=39  Score=30.53  Aligned_cols=114  Identities=9%  Similarity=-0.007  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH-HHhcC-
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAAD-VAHGE-  172 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~-~~~~~-  172 (325)
                      +...+..+...+.+.++.|+++-|..+..++.......+..  ...+...-+.++-..+ ..+|+..++..+. ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            55666777777888888888887777777665543222210  1112222333333333 6777777777766 22211 


Q ss_pred             --------------------------CChhhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHH
Q psy10061        173 --------------------------DNYKQAAEYISRAARMCVRV------KEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       173 --------------------------~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~  211 (325)
                                                ......+.++..+|......      +..++++..|.+++.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence                                      11234457777888877777      7888899999998887544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.75  E-value=4.3  Score=35.61  Aligned_cols=43  Identities=12%  Similarity=0.036  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061        158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  206 (325)
Q Consensus       158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  206 (325)
                      |..+|.+|+.+.+..|      ..++++|.++...|+.-.|+-+|-+++
T Consensus         1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence            3445555555555444      244455555555555555554444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12854 PPR_1: PPR repeat

Probab=81.55  E-value=3.3  Score=23.77  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQ  204 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~  204 (325)
                      .+|+.+-..|.+.|+.++|+++|++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            4788888999999999999998875

>KOG1497|consensus

Probab=80.93  E-value=43  Score=30.34  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---ccc
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH----LLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNC  248 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~  248 (325)
                      .....+...++.+|-+-++|..|...+. ++..  ..|.    .......+..++.+|+.-||..+|..+-.+.   ..+
T Consensus       100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~--~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen  100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPL--DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCc--ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            4456678899999999999999887753 2222  2221    2233445678999999999999999999986   344


Q ss_pred             CCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        249 CEAPEVQTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       249 ~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ..+++-.+..+++.|....-..+|.++.++
T Consensus       177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr  206 (399)
T KOG1497|consen  177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR  206 (399)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555566665433333445544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.60  E-value=3.6  Score=25.43  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      .+++..|+.+|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4678888888888888888888764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.54  E-value=8.8  Score=23.67  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=27.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE  144 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~  144 (325)
                      .+++..|..+|+.+.|.+.+++.+    ..|++.....+..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl----~~~~~~q~~eA~~   39 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI----EEGDEAQRQEARA   39 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH----HcCCHHHHHHHHH
Confidence            467888999999999999888876    3577665544433

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
2ifu_A	307	Crystal Structure Of A Gamma-Snap From Danio Rerio		3e-33

>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio Length = 307

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 3/284 (1%)
Query: 29  RKKEEGMEYVKSAEKHLKTSLLKWKPXXXXXXXXXXXXXTCFKGAKSFQQCKEYLLKAAN 88
           +K  E  E++  AEK+LKTS  KWKP               FK AK  +Q K+  L+ A 
Sbjct: 5   QKISEAHEHIAKAEKYLKTSFXKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 89  CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK 148
            +  N+S +HAAK  EQA    K+L    +     ++A+  ++E G  + A+  L++  K
Sbjct: 65  AHANNRSLFHAAKAFEQAGXXLKDLQRXPEAVQYIEKASVXYVENGTPDTAAXALDRAGK 124
Query: 149 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 208
             E L    A+ LY +AA V   E+  +QAAE I +A+R+ VR ++FD+AA  +++E   
Sbjct: 125 LXEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSX 184
Query: 209 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQAFD 265
           ++E E+     +           R D VAA+K  +E  +      + +   LE LLQA+D
Sbjct: 185 YKEXENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244
Query: 266 EEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPAS 309
           E+D E   +    P + + D +Y++LA  L +P       +P++
Sbjct: 245 EQDEEQLLRVCRSPLVTYXDNDYAKLAISLKVPGGGGGKKKPSA 288

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-63
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	6e-04

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  202 bits (514), Expect = 3e-63
 Identities = 108/291 (37%), Positives = 171/291 (58%), Gaps = 3/291 (1%)

Query: 27  SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA 86
           + +K  E  E++  AEK+LKTS +KWKPDYDSAA +Y+KAA  FK AK  +Q K+  L+ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 87  ANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG 146
           A  +  N+S +HAAK  EQA MM K+L  + +     ++A+ +++E G  + A+  L++ 
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122

Query: 147 AKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 206
            K +E L    A+ LY +AA V   E+  +QAAE I +A+R+ VR ++FD+AA  +++E 
Sbjct: 123 GKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182

Query: 207 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC---CEAPEVQTLEKLLQA 263
             ++E E+     +  +A VLVQL R D VAA+K  +E  +      + +   LE LLQA
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242

Query: 264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRPASIRQNA 314
           +DE+D E   +    P + +MD +Y++LA  L +P       +P++     
Sbjct: 243 YDEQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGKKKPSASASAQ 293

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score =  128 bits (322), Expect = 4e-35
 Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 16/261 (6%)

Query: 33  EGMEYVKSAEKHLKTSLLKWK-------PDYDSAADDYSKAATCFKGAKSFQQCKEYLLK 85
           + +E +K AEK    S    K         ++ AAD   +AAT ++  K      +  LK
Sbjct: 3   DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK 62

Query: 86  AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
           AA+  +   +   A     +A    K   +  +  +  + A  +F  +G     +    +
Sbjct: 63  AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122

Query: 146 GAKSLEELKSDA--ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203
             + LE    D   A+  Y  A +    + +   + +   + A +     ++ +A+D+  
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182

Query: 204 QEIGY--HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTL 257
           + I                      L QLA  D VAA +  +E      N  ++ E   L
Sbjct: 183 KLIKSSMGNRLSQWSLKDYFLKK-GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL 241

Query: 258 EKLLQAFDEEDPEGARQALND 278
           + L+ A +E D E   +   +
Sbjct: 242 KSLIDAVNEGDSEQLSEHCKE 262

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 24/193 (12%), Positives = 47/193 (24%), Gaps = 21/193 (10%)

Query: 55  DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE-- 112
           +   +     +     +    +      L++ +           A +  E+A  +  E  
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE 172
           L  L   E L +  A L       + A      G + L   +    L   +     +   
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187

Query: 173 DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 232
            +   A   ++R   +                         H   I       V+     
Sbjct: 188 GDLDNARSQLNRLENLL-------------------GNGKYHSDWISNANKVRVIYWQMT 228

Query: 233 GDTVAAEKAFKEW 245
           GD  AA    +  
Sbjct: 229 GDKAAAANWLRHT 241

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 25/213 (11%), Positives = 59/213 (27%), Gaps = 25/213 (11%)

Query: 55  DYDSAADDYSKA---ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK 111
              +A +   KA          +         ++A   +   +    A       I +  
Sbjct: 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD-EAEASARSGIEVLS 166

Query: 112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRA--ADVA 169
                  ++ LA       L +G+ + A + L +    L   K  +     +        
Sbjct: 167 SYQPQQQLQCLA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225

Query: 170 HGEDNYKQAAEYISRA------------------ARMCVRVKEFDKAADLIRQEIGYHQE 211
               +   AA ++                     AR  + + EF+ A  ++ +     + 
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285

Query: 212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 244
              +  + R  + L  +    G    A++   +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 55/365 (15%), Positives = 90/365 (24%), Gaps = 107/365 (29%)

Query: 6   KKEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSK 65
                 + V+   K  LS       KEE    + S +    T  L W             
Sbjct: 30  VDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDAVSGTLRLFWT------------ 70

Query: 66  AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHA---AKHLEQAIMMCKELNDL-TDVEN 121
                K  +  Q+  E +L+  N Y+   S          +    M  ++ + L  D + 
Sbjct: 71  --LLSKQEEMVQKFVEEVLRI-N-YKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV 125

Query: 122 LAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLY--------SRAADVAHGED 173
            AK   +       R      L +    L EL+    + +           A DV     
Sbjct: 126 FAKYNVS-------RLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 174 ---------------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----- 213
                          N       +    ++  ++     +       I     S      
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 214 HLLAIGRLAVAL-VLVQLARGDTVAAEKAFKEWGNCC-----------------EAPEVQ 255
            LL        L VL        V   KA+  +   C                       
Sbjct: 236 RLLKSKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 256 TLEKLLQAFDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPR-----PASI 310
           +L+        ++ +          +K++D        DLP        PR       SI
Sbjct: 290 SLDHHSMTLTPDEVKSL-------LLKYLDCRPQ----DLP-REVLTTNPRRLSIIAESI 337

Query: 311 RQNAA 315
           R   A
Sbjct: 338 RDGLA 342

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 55  DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN 114
            Y    +         +    FQQ  ++    A          +    L++ +       
Sbjct: 90  RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149

Query: 115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAAL--TLYSRAADVAHGE 172
           D+     +    A ++ E G  +    + E+  K LE L  +      +    A   + +
Sbjct: 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209

Query: 173 DNYKQAAEYISRAARMCVRVKEFDKAADL 201
             Y+++   +++A  +  R+        L
Sbjct: 210 SRYEESLYQVNKAIEISCRINSMALIGQL 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	100.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	100.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.93
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.87
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.8
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.79
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.77
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.72
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.69
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.67
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.67
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.66
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.64
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.57
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.45
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.44
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.43
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.37
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.27
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.24
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.22
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.22
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.2
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.17
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.14
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.02
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.02
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.0
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.99
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.98
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.97
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.96
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.95
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.89
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.86
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.82
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.81
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.75
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.73
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.73
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.71
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.61
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.59
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.53
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.33
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.23
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.16
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	98.07
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.9
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.65
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.65
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	97.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.62
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.62
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.54
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.51
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.28
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.28
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.09
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.05
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	96.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.48
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.42
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.13
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.45
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.32
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.28
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.23
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	94.02
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	93.01
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.97
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	92.77
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.63
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.54
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	92.36
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.1
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	92.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.16
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.92
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.19
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.16
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.42
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	86.33
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.88
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	84.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	84.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.54
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	83.11
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.52
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.03

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=100.00  E-value=3.9e-37  Score=276.92  Aligned_cols=279  Identities=38%  Similarity=0.571  Sum_probs=255.4

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      ++++++|.+++++|.+..++++|.|+++++.|+++|.+++.+|...|++++|+.+|.++++++.+.+++..++.++.++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46899999999999999988888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|..+|++++|+.+|++|++++...|++..++.++.++|.+|.. + +++|+.+|++|+++++..++......++.++|
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999 7 99999999999999999888888889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cccCCChHHHHHHHHHHH
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~~~~~~e~~~l~~L~~a  263 (325)
                      .+|..+|+|++|+.+|++++.+.++.+.......+++++|.+++.+|++++|..+|+++   +.|..+.++.++..|+.+
T Consensus       163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~  242 (307)
T 2ifu_A          163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA  242 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999988777677778999999999999999999999997   677788899999999999


Q ss_pred             HhcCCHHHHHHHhcChhhhcccHHHHHHhhcCCCCCCCCCCCcc
Q psy10061        264 FDEEDPEGARQALNDPFIKHMDVEYSRLARDLPLPSATCATPRP  307 (325)
Q Consensus       264 ~~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~  307 (325)
                      +..||.+.+..+++-+.+..++++..++++++.+|++++.+|++
T Consensus       243 ~~~~d~~~~~~~~~~~~~~~ld~~~~~~~~~l~~~~~~~~~~~~  286 (307)
T 2ifu_A          243 YDEQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGKKKP  286 (307)
T ss_dssp             HHTTCHHHHHHHTTSHHHHTSCHHHHHHHHTCCCC---------
T ss_pred             HHhcCHHHHHHHHhCchhhhhhHHHHHHHHhCCCCCCCcCCCCC
Confidence            99999999999544488899999999999999999987666653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=100.00  E-value=3.2e-33  Score=249.58  Aligned_cols=263  Identities=19%  Similarity=0.189  Sum_probs=222.7

Q ss_pred             HHHHHHHHHhhhccc-----ccCCC-CC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         34 GMEYVKSAEKHLKTS-----LLKWK-PD-YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        34 A~~l~~~A~~~~~~~-----~~~~~-~~-~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      |.+++++|.+.++++     +|.|+ ++ +++|+++|++++.+|...|++++|+.+|.++++++.+.+++...+.++.++
T Consensus         4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   83 (292)
T 1qqe_A            4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA   83 (292)
T ss_dssp             HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            444444444444432     33444 44 888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      |.+|..+|++++|+.+|++|+.++...|++..++.++.++|.+|... + +++|+.+|++|+++++..++......++.+
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999985 7 999999999999999988887777889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEK  259 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~  259 (325)
                      +|.+|..+|+|++|+.+|++++.+.+..+.. .....+++++|.|+..+|++++|..+|+++    +.|..+.++..+..
T Consensus       164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~  243 (292)
T 1qqe_A          164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKS  243 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            9999999999999999999999987655432 344557889999999999999999999997    67777788889999


Q ss_pred             HHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061        260 LLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       260 L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~  296 (325)
                      |+.++..+|.+.+.+++.. ..+..++++...+..+++
T Consensus       244 l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k  281 (292)
T 1qqe_A          244 LIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK  281 (292)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence            9999988888888888887 667788999888877665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.94  E-value=6.3e-25  Score=195.70  Aligned_cols=250  Identities=14%  Similarity=0.124  Sum_probs=199.5

Q ss_pred             hhhhHHHHHHhhchhc------ccccc--ccHHHHHHHHHHHHhhhcccccCCCCCHHHH--------------------
Q psy10061          8 EEGMEYVKSAEKHSLS------TMTSD--RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSA--------------------   59 (325)
Q Consensus         8 ~~~~~~~~~ae~~~~~------~~~~~--~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A--------------------   59 (325)
                      .||++++++|||++++      ||.++  +++++|+++|.+|..++..     .++|++|                    
T Consensus         2 ~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~   76 (292)
T 1qqe_A            2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRL-----RKELNLAGDSFLKAADYQKKAGNEDEA   76 (292)
T ss_dssp             CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHH-----TTCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999999994      56553  3699999999999877754     2444444                    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      +..|..+|.+|...|++++|+.+|.+++.++...+++..++.++.++|.+|... |++++|+.+|++|++++...++...
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            455555677788899999999999999999999999999999999999999996 9999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  216 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  216 (325)
                      .+.++.++|.++...+ +++|+.+|++++++....+.. .....++.++|.++..+|++++|+.+|++++.+.+..... 
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-  235 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-  235 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-
Confidence            8999999999999988 999999999999988776543 3556688999999999999999999999999887665432 


Q ss_pred             HHHHHHHHHHHHHH--hcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Q psy10061        217 AIGRLAVALVLVQL--ARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF  264 (325)
Q Consensus       217 ~~~~~~~~lg~~~~--~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~  264 (325)
                      .....+..++.++.  ..+++.+|+..|+++... +.....++.++.+.+
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l-~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL-DKWKITILNKIKESI  284 (292)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc-HHHHHHHHHHHHHHh
Confidence            12345566777665  457788888888876332 223345666666665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=1.3e-23  Score=194.37  Aligned_cols=257  Identities=12%  Similarity=0.021  Sum_probs=225.6

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|+++++++.+..+.     .++......++..+|.+|...|++++|..+|.+++.+....++....+.++.++|
T Consensus        99 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  173 (411)
T 4a1s_A           99 LGDYNKAMQYHKHDLTLAKS-----MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG  173 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-----ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            35777888888887777665     3566677778888889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC-----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061        108 MMCKELND-----------------LTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus       108 ~~y~~~g~-----------------~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      .+|...|+                 +++|+.++++++.+....++....+.++..+|.+|...+ +++|+.+|++++++.
T Consensus       174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (411)
T 4a1s_A          174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA  253 (411)
T ss_dssp             HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            99999999                 999999999999999999999999999999999999887 999999999999999


Q ss_pred             hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Q psy10061        170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----  245 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----  245 (325)
                      ...++......++..+|.+|..+|++++|+.+|++++.+.+..++......++..+|.++...|++++|..+|+++    
T Consensus       254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  333 (411)
T 4a1s_A          254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA  333 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9888877778899999999999999999999999999999988877777889999999999999999999999997    


Q ss_pred             ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC--hhhhcccHHHH
Q psy10061        246 GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND--PFIKHMDVEYS  289 (325)
Q Consensus       246 ~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~--~~~~~l~~~~~  289 (325)
                      +.. .......++..|+.++ ..|+.+.+...+++  .++..++....
T Consensus       334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  381 (411)
T 4a1s_A          334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX  381 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence            222 2334556788899987 69999999999998  66666655433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.93  E-value=1.3e-23  Score=188.58  Aligned_cols=234  Identities=18%  Similarity=0.141  Sum_probs=194.6

Q ss_pred             ccchhhhhhHHHHHHhhchh-ccccccccHHHHHHHHHHHHhhhccc------c---------cCCCCCHHHHHHHHHHH
Q psy10061          3 SDRKKEEGMEYVKSAEKHSL-STMTSDRKKEEGMEYVKSAEKHLKTS------L---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         3 ~~~~~~~~~~~~~~ae~~~~-~~~~~~~~~~eA~~l~~~A~~~~~~~------~---------~~~~~~~~~A~~~y~~a   66 (325)
                      +.++..+|++++++|+|.++ +||.+++++++|.++|.++..+++..      +         ..-.++...++.+|.++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45778999999999999998 46665678999999999987766531      0         00024445555666667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKG  146 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~l  146 (325)
                      |.+|...|++++|+.+|.+++.++...+++...+.++.++|.+|.. |++++|+.+|++|++++...|+....+.++.++
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            7788889999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  225 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  225 (325)
                      |.+|...+ +++|+.+|++++.+.+..+.......++..+|.++..+|++++|+.+|++++ +.+..... .....+..+
T Consensus       162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l  239 (307)
T 2ifu_A          162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS-EDCAALEDL  239 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS-HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC-HHHHHHHHH
Confidence            99999988 9999999999999999887766667789999999999999999999999999 65544321 233445566


Q ss_pred             HHHHHhcCCHHHHHH
Q psy10061        226 VLVQLARGDTVAAEK  240 (325)
Q Consensus       226 g~~~~~~gd~~~A~~  240 (325)
                      +.++ ..||.+.+.+
T Consensus       240 ~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          240 LQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHH-HTTCHHHHHH
T ss_pred             HHHH-HhcCHHHHHH
Confidence            6655 5788766665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.93  E-value=8.2e-23  Score=188.27  Aligned_cols=243  Identities=12%  Similarity=0.086  Sum_probs=218.6

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS-AYHAAKHLEQA  106 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~  106 (325)
                      .+++++|+++|++|.++.+.     .++....+.+|..+|.+|...|++++|..++.++++++.+.++ ....+.++.++
T Consensus       116 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIF-----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            47999999999999999877     4777888999999999999999999999999999999999987 78899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|..+|++++|+.++++|+++....++....+.++.++|.+|...+ +++|+.+|++|+++++..++......++.++
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988 9999999999999999988755568899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEWGNCCEAPEVQTLEKLLQ  262 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~~~~~~~~e~~~l~~L~~  262 (325)
                      |.+|..+|++++|+.++++++.+.+..+++..... +..+|.++...|+   +.+|...+++....  .....+...|+.
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~  347 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHH
Confidence            99999999999999999999999998887766655 5679999999999   78888888776221  233456778999


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      .+ ..|+.+.+...+++
T Consensus       348 ~y~~~g~~~~A~~~~~~  364 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLK  364 (383)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            98 59999999998876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=2.7e-22  Score=178.63  Aligned_cols=268  Identities=12%  Similarity=0.037  Sum_probs=223.8

Q ss_pred             hhhhhhHHHHHHhhchhc--------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS--------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK   71 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~--------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~   71 (325)
                      ...+|..++.+|-+.-..              .+...+++++|++++.++....+.     .++....+..+..+|.+|.
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----IGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHHHH
Confidence            356667777766554211              122346888899999988888766     2666777888888899999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL  131 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~  131 (325)
                      ..|++++|..++.+++.+....++....+.++.++|.+|...|+                    +++|+.++++++.+..
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~  174 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT  174 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888889999999999999999                    9999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..++....+.++..+|.++...+ +++|+.++++++++....++......++..+|.++...|++++|+.++++++.+.+
T Consensus       175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  254 (338)
T 3ro2_A          175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  254 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99998888899999999998887 99999999999999988887777788899999999999999999999999999988


Q ss_pred             HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..++......++..+|.++...|++++|..+++++    +.. .......++..|+.++ ..|+.+.+...+++
T Consensus       255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            88777777788889999999999999999999986    222 2333456777888887 58999999988876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.92  E-value=4.1e-22  Score=183.04  Aligned_cols=268  Identities=11%  Similarity=0.034  Sum_probs=235.3

Q ss_pred             hhhhhhHHHHHHhhchhc--------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS--------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFK   71 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~--------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~   71 (325)
                      ...+|..++.+|-+....              .+...+++++|++++.+|....+.     .++....+.++..+|.+|.
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----IGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHH
Confidence            356677777776654221              122346899999999999888876     3677788889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND--------------------LTDVENLAKQAATLFL  131 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~--------------------~~eA~~~~~~A~~~~~  131 (325)
                      ..|++++|..++.+++.+....++....+.++.++|.+|...|+                    +++|+.++++++.+..
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999                    9999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..++....+.++.++|.++...+ +++|+.++++++++....++......++..+|.+|..+|++++|+.+|++++.+.+
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  258 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  258 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999888 99999999999999999888888888999999999999999999999999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..++......++..+|.++...|++++|..+|+++    +.. .......++..++.++ ..|+.+.+...+++
T Consensus       259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88887777889999999999999999999999997    222 2333456778889987 69999999999887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.3e-21  Score=179.81  Aligned_cols=259  Identities=12%  Similarity=0.053  Sum_probs=227.3

Q ss_pred             hhhhhhHHHHHHhhchhc----------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS----------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATC   69 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~----------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~   69 (325)
                      +..+|..++.+|-+....                .+...+++++|+.++.++.+....     .++....+.++..+|.+
T Consensus        62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~  136 (406)
T 3sf4_A           62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----LNDKVGEARALYNLGNV  136 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHH
Confidence            356777777776554321                123347999999999999998876     36777788999999999


Q ss_pred             HHhcCC--------------------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         70 FKGAKS--------------------FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        70 y~~~g~--------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      |...|+                    +++|..+|.+++.+....++....+.++.++|.+|...|++++|+.++++++.+
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (406)
T 3sf4_A          137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  216 (406)
T ss_dssp             HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred             HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999                    999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        130 FLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       130 ~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ....++....+.++.++|.+|...+ +++|+.+|++++++....++......++..+|.+|...|++++|+.+|++++.+
T Consensus       217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999887 999999999999999998888888889999999999999999999999999999


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCH
Q psy10061        209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDP  269 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~  269 (325)
                      .+..++......++..+|.+|...|++++|..+|+++    ... .......++..|+.++ ..|+.
T Consensus       297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            9998887778889999999999999999999999997    222 2334566777888876 46655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.90  E-value=1.4e-21  Score=179.88  Aligned_cols=242  Identities=16%  Similarity=0.076  Sum_probs=214.1

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS-AYHAAKHLEQA  106 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~  106 (325)
                      .+++++|+++|.+|.++.+.     .++....+.++..+|.+|...|++++|..++.++++++.+.++ ....+.++.++
T Consensus       114 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPF-----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhh-----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            47999999999999999876     3777888999999999999999999999999999999999876 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|..+|++++|+.++++|+++....++....+.++.++|.+|...+ +++|+.+|++++++++..+++.. ..++..+
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l  267 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGL  267 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHH
Confidence            999999999999999999999999999999999999999999999887 99999999999999998777666 7899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhcccCCChHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEWGNCCEAPEVQTLEKLLQ  262 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~~~~~~~~e~~~l~~L~~  262 (325)
                      |.+|..+|++++|+.++++++.+.++.+++.... .+..++.++...|+   +.+|+.++++....  .....+...|+.
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~  344 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHHHH
Confidence            9999999999999999999999988776654443 34778999999999   88888888875222  123346668899


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      .+ ..|+.+.+....++
T Consensus       345 ~y~~~g~~~~A~~~~~~  361 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRK  361 (378)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            88 59999999998876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=5e-21  Score=176.98  Aligned_cols=245  Identities=13%  Similarity=0.081  Sum_probs=219.7

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+.+|+++.+..       .++....+.++..+|.+|...|++++|..+|.+++.+.+..++....+.++..+
T Consensus        60 ~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            3468999999999998874       246666778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-----------------HHHHHHHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-----------------SDAALTLYSRAADV  168 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-----------------~~~A~~~y~~Al~~  168 (325)
                      |.+|...|++++|+.++++++.+....++....+.++.++|.+|... +                 +++|+.+|++++++
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765 5                 89999999999999


Q ss_pred             HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Q psy10061        169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---  245 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---  245 (325)
                      ....++......++..+|.+|..+|++++|+.+|++++.+.+..++......++..+|.+|...|++++|..+|+++   
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99888888888899999999999999999999999999999988877777789999999999999999999999997   


Q ss_pred             -ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        246 -GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       246 -~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                       +.. .......++..++.++ ..|+.+.+...+++
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR  328 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             222 1223456778889987 69999999988876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.90  E-value=2.5e-21  Score=178.34  Aligned_cols=210  Identities=12%  Similarity=0.093  Sum_probs=184.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAASTVL  143 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~aa~~l  143 (325)
                      ..|.++...|++++|..+|.+++.+....++....+.++.++|.+|..+|++++|+.++++|++++...++ ....+.++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999998 78889999


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      .++|.+|...+ +++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++++.+.+..++......++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            99999999988 99999999999999999998888889999999999999999999999999999999887734446789


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHH
Q psy10061        223 VALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQ  274 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~  274 (325)
                      .++|.+|...|++++|..+++++    +...+..-...+..|+..+ ..|+.+.+..
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  324 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG  324 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999999999997    2222222222355677877 5787433333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=1.2e-20  Score=167.83  Aligned_cols=245  Identities=15%  Similarity=0.072  Sum_probs=219.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+.+|+++.+..       ..+....+.++..+|.+|...|++++|..++.+++.+....++....+.++..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            3468999999999999864       245666788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K--------------------SDAALTLYSRA  165 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~--------------------~~~A~~~y~~A  165 (325)
                      |.+|...|++++|+.++++++.+....++....+.++..+|.++... +                    +++|+.+++++
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765 4                    79999999999


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.+.+..++......++..+|.++...|++++|+.++++++.+.+..++......++..+|.++...|++++|..+++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99998888888888899999999999999999999999999999988877777889999999999999999999999997


Q ss_pred             ----cccC-CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        246 ----GNCC-EAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       246 ----~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                          +... ......++..++.++ ..|+.+.+...+++
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK  288 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                2222 223456777888887 69999999998876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.89  E-value=1.4e-20  Score=173.09  Aligned_cols=213  Identities=13%  Similarity=0.009  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHH
Q psy10061         62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAAS  140 (325)
Q Consensus        62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~aa  140 (325)
                      .|...|..+...|++++|+.+|.+++.+....++....+.++.++|.+|...|++++|+.++++|++++...++ ....+
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999887 66889


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      .++.++|.+|...+ +++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++++.+++..+++.. .
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~  261 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-P  261 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-H
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-H
Confidence            99999999999988 999999999999999999888888899999999999999999999999999999998877666 6


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh----cccCCChHHHHHHHHHHHH-hcCCHHHHHHH
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEVQTLEKLLQAF-DEEDPEGARQA  275 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~  275 (325)
                      .++.++|.++...|++++|..+++++    ....+..-...+..|...+ ..++.+....+
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a  322 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL  322 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            78999999999999999999999997    2222222223445566666 47774333333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.87  E-value=5.4e-20  Score=160.15  Aligned_cols=183  Identities=14%  Similarity=0.134  Sum_probs=160.6

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHL  103 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~  103 (325)
                      ...+++++|+.+|++|...+++.+   ..+.+.-+.++..+|.+|...|++++|..+|.+++.+..+.  ++....+.++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL   88 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            345789999999999999987632   24557778899999999999999999999999999999887  6778889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQG--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQA  178 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g--~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~  178 (325)
                      .++|.+|...|++++|+.++++++.++.+.+  +....+.++.++|.++...+ +++|+.+|+++++++...  .+....
T Consensus        89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999999999999999998873  34677889999999999888 999999999999997654  334556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..++..+|.+|..+|++++|+.+|++++.+.+.
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            778999999999999999999999999998665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=4.2e-19  Score=156.98  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=162.6

Q ss_pred             ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHH
Q psy10061         25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKH  102 (325)
Q Consensus        25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~  102 (325)
                      +...+++++|+.++.++.+......   .++......++..+|.+|...|++++|..+|.+++.+..+.  ++....+.+
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            3445689999999999999886521   23567778999999999999999999999999999999877  677788999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhh
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQ  177 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~  177 (325)
                      +.++|.+|...|++++|+.+++++++++...  ++....+.++..+|.++...+ +++|+.+|+++++++...  ++...
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  193 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN  193 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999887  777788899999999999887 999999999999998775  34556


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ...++..+|.+|..+|++++|+.+|++++.+.++
T Consensus       194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999998655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.5e-18  Score=153.35  Aligned_cols=226  Identities=14%  Similarity=0.139  Sum_probs=195.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      .++.+.-+..+..+|.+|...|++++|..+|.+++.+....+  +....+.++..+|.+|...|++++|+.++++++.++
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            567778889999999999999999999999999999998775  667788999999999999999999999999999999


Q ss_pred             HHc--CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        131 LEQ--GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       131 ~~~--g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      ...  ++....+.++..+|.++...+ +++|+.+|++++++....  ++......++..+|.++...|++++|+.+|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            887  777788899999999999887 999999999999998765  555666789999999999999999999999999


Q ss_pred             HHHHHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc----------------------------------
Q psy10061        206 IGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC----------------------------------  248 (325)
Q Consensus       206 l~~~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~----------------------------------  248 (325)
                      +.++...  ++......++..+|.++...|++++|..+|+++ ...                                  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            9998776  233445568899999999999999999999996 110                                  


Q ss_pred             -------------CCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        249 -------------CEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       249 -------------~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                                   .......++..|+.++ ..|+.+.+...+++
T Consensus       260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                         1234456777888887 69999999888776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.83  E-value=2.6e-18  Score=142.92  Aligned_cols=191  Identities=12%  Similarity=0.011  Sum_probs=168.0

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .|++++|.++++...           ++....+..+..+|.+|...|++++|..+|.+++.+.+..++....+.++.++|
T Consensus         5 ~g~~~~A~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   73 (203)
T 3gw4_A            5 AHDYALAERQAQALL-----------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG   73 (203)
T ss_dssp             --CHHHHHHHHHHHH-----------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            467888888443321           222345788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQG-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      .+|...|++++|+.++++++.++...+ +....+.++.++|.++...+ +++|+.++++++++.+..++......++..+
T Consensus        74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  153 (203)
T 3gw4_A           74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL  153 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            999999999999999999999999999 56688899999999999887 9999999999999999988888888889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      |.++..+|++++|+.++++++.+.++.+++...+.++..++.+.
T Consensus       154 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  197 (203)
T 3gw4_A          154 GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE  197 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence            99999999999999999999999999998888877777666553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.82  E-value=3.8e-17  Score=149.37  Aligned_cols=248  Identities=13%  Similarity=-0.005  Sum_probs=196.7

Q ss_pred             cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      .....+++++|..++.+|......      .+...-+.++..+|.++...|++++|...+.+++.+....++....+.++
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPP------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCC------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            334457999999999999887643      34444567788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .++|.+|...|++++|+.++++++.+....++.  ...+.++.++|.++...+ +++|..++++++++.+..++.. ...
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~  175 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQ  175 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHH
Confidence            999999999999999999999999999998875  567788899999998887 9999999999999998876654 446


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC--ChHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE--APEVQT  256 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~--~~e~~~  256 (325)
                      ++..+|.++...|++++|+.++++++.+.+..+.+ ..........+.++...|++++|...++++ .....  ......
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            88899999999999999999999999887665432 222222224455677888888888888886 21111  111223


Q ss_pred             HHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        257 LEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       257 l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +..+++++ ..|+.+.+...+++
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~  278 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEE  278 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44566665 47777777766655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.80  E-value=8.7e-18  Score=149.22  Aligned_cols=183  Identities=14%  Similarity=0.051  Sum_probs=157.8

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .++|++|++++.++.+....     .++.......|..+|.++...+++++|+.+|.+++.+....++....+.++.++|
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEY-----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhccccC-----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            35788888888888775432     2333444667777899998899999999999999998777777778888999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      .+|..+|++++|+.+|+++++++... ++....+.++.++|.+|...+ +++|+.++++++++....++....+.++.++
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  242 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR  242 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            99999999999999999999999888 788888899999999999887 9999999999999999888877778899999


Q ss_pred             HHHHHHcC-CHHHHHHHHHHHHHHHHHcccH
Q psy10061        186 ARMCVRVK-EFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       186 g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      |.+|..+| .+++|+.+|++++.+++..++.
T Consensus       243 g~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~  273 (293)
T 3u3w_A          243 GECLRKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            99999999 5799999999999999887754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.79  E-value=4.9e-17  Score=129.17  Aligned_cols=160  Identities=7%  Similarity=-0.020  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      +|....+..+..+|.+|...|++++|..++.+++.+....++....+.++.++|.+|...|++++|+.++++++.+....
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45666777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ++....+.++.++|.++...+ +++|+.++++++++.+..++......++..+|.++...|++++|+.++++++.+.++.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            888777888888888887776 8888888888888887777777777788888888888888888888888888776554


Q ss_pred             c
Q psy10061        213 E  213 (325)
Q Consensus       213 ~  213 (325)
                      +
T Consensus       163 ~  163 (164)
T 3ro3_A          163 G  163 (164)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.79  E-value=3.9e-17  Score=135.77  Aligned_cols=168  Identities=10%  Similarity=0.034  Sum_probs=148.4

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      ..|++++|...+...      .+++...+.++..+|.+|...|++++|+.++++++.++...++....+.++.++|.++.
T Consensus         4 ~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            4 EAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             ---CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            456777777743322      23455668899999999999999999999999999999999999999999999999999


Q ss_pred             ccC-HHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        152 ELK-SDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       152 ~~~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      ..+ +++|+.++++++++++..+ +......++.++|.++..+|++++|+.++++++.+.+..+++.....++.++|.++
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            887 9999999999999999888 45577789999999999999999999999999999998888888888899999999


Q ss_pred             HhcCCHHHHHHHHHhh
Q psy10061        230 LARGDTVAAEKAFKEW  245 (325)
Q Consensus       230 ~~~gd~~~A~~~~~~~  245 (325)
                      ...|++++|..+++++
T Consensus       158 ~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHH
Confidence            9999999999999997

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.78  E-value=3.7e-17  Score=145.11  Aligned_cols=186  Identities=13%  Similarity=0.031  Sum_probs=144.9

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..++|++|++++.++.+....     .++...-...+...|.++...|++++|..+|.+++.+..+..+....+.++.++
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEY-----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccC-----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            345788888888888776543     123344455666678888888888899888888888777766777778888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNRE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~-~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      |.+|..+|++++|+.+|++|++++...++.. ..+.++.++|.+|...+ +++|+.+|++++++....++....+.++.+
T Consensus       162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~  241 (293)
T 2qfc_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            9998888899999999999888888775533 33478888888888877 889999998888888776666666778888


Q ss_pred             HHHHHHHcCCHHHH-HHHHHHHHHHHHHcccHHH
Q psy10061        185 AARMCVRVKEFDKA-ADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       185 lg~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~  217 (325)
                      +|.+|..+|++++| ..+|++++.+++..++...
T Consensus       242 lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~  275 (293)
T 2qfc_A          242 RGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY  275 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence            88888888888888 7778888888887776443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=3.8e-17  Score=141.95  Aligned_cols=208  Identities=15%  Similarity=0.110  Sum_probs=172.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTVLEKG  146 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~l~~l  146 (325)
                      ...|++++|..+|.++++++.+..  +....+.++..+|.+|...|++++|+.++++++.+..+.  ++....+.++.++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            356777888888888888877653  456778899999999999999999999999999999887  7778889999999


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--cHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRL  221 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~  221 (325)
                      |.+|...+ +++|+.+|++++.+++..  .+......++.++|.+|..+|++++|+.+|++++.++....  +......+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999887 999999999999998765  23355678999999999999999999999999999977652  23445578


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-cc-----c------------------------------------------CCChH
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW-GN-----C------------------------------------------CEAPE  253 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~-~~-----~------------------------------------------~~~~e  253 (325)
                      +.++|.++...|++++|..+|+++ ..     +                                          .....
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            899999999999999999999986 11     0                                          12334


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        254 VQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       254 ~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..++..|+.++ ..|+.+.+...+++
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~  277 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDC  277 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45677888887 58999988887765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=7.1e-17  Score=150.21  Aligned_cols=234  Identities=8%  Similarity=-0.030  Sum_probs=202.2

Q ss_pred             hhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccc--cCC----CCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSL--LKW----KPDYDSAADDYSKAATCFKGAKSFQQCK   80 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~--~~~----~~~~~~A~~~y~~a~~~y~~~g~~~~A~   80 (325)
                      +|.|...+.+|++..+     .++|++|++.|.++.+.....-  ...    ......-..++.++|.+|...|++++|.
T Consensus         1 ~s~p~~~l~~a~~l~~-----~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~   75 (434)
T 4b4t_Q            1 MSLPGSKLEEARRLVN-----EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLR   75 (434)
T ss_dssp             CCSTTHHHHHHHHHHH-----HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCChHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence            3566677788877443     3589999999999998776421  000    1122334466788999999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHH
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAAL  159 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~  159 (325)
                      +++.++..+....++......+...++.++...|++++|+.++++++.+....++....+.++.++|.+|...+ +++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (434)
T 4b4t_Q           76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL  155 (434)
T ss_dssp             HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence            99999999999998888888889999999999999999999999999999999988888999999999999988 99999


Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHH
Q psy10061        160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAA  238 (325)
Q Consensus       160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A  238 (325)
                      .++++++......++.....+++..+|.+|..+|+|++|..++++++.+...+.. +...+.++..+|.++...|++.+|
T Consensus       156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999988888888899999999999999999999999999999888764 456778889999999999999999


Q ss_pred             HHHHHhh
Q psy10061        239 EKAFKEW  245 (325)
Q Consensus       239 ~~~~~~~  245 (325)
                      ..+|.++
T Consensus       236 ~~~~~~a  242 (434)
T 4b4t_Q          236 FSYFFES  242 (434)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.77  E-value=2.3e-17  Score=146.54  Aligned_cols=186  Identities=9%  Similarity=-0.019  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...+...+..+...|++++|.+.+.+++.......+.......+..+|.+|...|++++|+.++++++.+.....+....
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            44555667888899999999999999988765544445566777889999999999999999999999988777777778


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ-AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      +.++.++|.+|...+ +++|+.+|++|+++++...+... ...++.++|.+|..+|+|++|+.++++++.+....++...
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            899999999999887 99999999999999887754333 3379999999999999999999999999999877666556


Q ss_pred             HHHHHHHHHHHHHhcCCHHHH-HHHHHhh
Q psy10061        218 IGRLAVALVLVQLARGDTVAA-EKAFKEW  245 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A-~~~~~~~  245 (325)
                      .+.+++++|.+|...|++++| ..+|+++
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            677899999999999999999 8889986

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.77  E-value=2e-17  Score=146.84  Aligned_cols=188  Identities=10%  Similarity=-0.012  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE  137 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~  137 (325)
                      .-...+.+.+..+...|++++|...+.++........+.......+..+|.+|...+++++|+.++++|+.+....++..
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            34455556677788999999999999998875433333333466777899999999999999999999999877788888


Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ..+.++.++|.+|...+ +++|+.+|++++++++.. ++......++.++|.+|..+|+|++|+.++++++.+.++.++.
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            88889999999999887 999999999999999887 6667778899999999999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARG-DTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~g-d~~~A~~~~~~~  245 (325)
                      ...+.++.++|.+|..+| ++++|.++|+++
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            777889999999999999 579999999997

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.77  E-value=1.4e-16  Score=126.40  Aligned_cols=153  Identities=15%  Similarity=0.084  Sum_probs=143.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061         93 NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        93 ~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      .+++...+.++..+|.+|...|++++|+.++++++++....++....+.++..+|.++...+ +++|+.++++++++...
T Consensus         2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999887 99999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++......++..+|.++...|++++|+.++++++.+.++.++......++..+|.++...|++++|..+++++
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999988887778889999999999999999999999987

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=1.6e-16  Score=144.53  Aligned_cols=222  Identities=12%  Similarity=-0.010  Sum_probs=126.5

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|+++|+++.+....        .   ...+..+|.+|...|++++|..+|.+++.+....      ..++.++|
T Consensus        78 ~g~~~~A~~~~~~al~~~p~--------~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~  140 (365)
T 4eqf_A           78 EGDLPVTILFMEAAILQDPG--------D---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALA  140 (365)
T ss_dssp             HTCHHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcC--------C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Confidence            36788888888888775422        1   4557777888888888888888888888764322      45788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNRE----AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~----~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .+|...|++++|+.++++++.+........    +.+..+..+|.++...+ +++|+.+|++++.+.+...+    ..++
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~  216 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQ  216 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHH
Confidence            888888888888888888887654432211    12334444555555555 66666666666655433211    2345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLL  261 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~  261 (325)
                      ..+|.+|..+|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+..|+++ ......  ..+...|+
T Consensus       217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~  288 (365)
T 4eqf_A          217 TGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSRYNLG  288 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHH
Confidence            556666666666666666666655542211      124455566666666666666666554 211111  33444555


Q ss_pred             HHH-hcCCHHHHHHHhcC
Q psy10061        262 QAF-DEEDPEGARQALND  278 (325)
Q Consensus       262 ~a~-~~gd~~~~~~~~~~  278 (325)
                      .++ ..|+.+.+...+++
T Consensus       289 ~~~~~~g~~~~A~~~~~~  306 (365)
T 4eqf_A          289 ISCINLGAYREAVSNFLT  306 (365)
T ss_dssp             HHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHH
Confidence            554 35555555555544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.7e-15  Score=129.94  Aligned_cols=212  Identities=14%  Similarity=0.029  Sum_probs=140.7

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK-SAYHAAKHLEQ  105 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~  105 (325)
                      ..+++++|+++|.++.+.. .     .      ...+...|.+|...|++++|..++.+++.+..... +....+.++..
T Consensus        17 ~~~~~~~A~~~~~~a~~~~-~-----~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWELH-K-----D------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-C-----C------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhh-c-----c------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            3468999999999998876 3     1      35788999999999999999999999999998764 56666889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      +|.+|...|++++|+.++++++.+...              +.++...+ +++|+..+++++...      .....++..
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~  144 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVN------PEKAEEARL  144 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcC------cchHHHHHH
Confidence            999999999999999999999885321              12233333 555566555555432      122345556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a  263 (325)
                      +|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|...|+++ .....  ...+...++.+
T Consensus       145 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~  216 (258)
T 3uq3_A          145 EGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHHHHHH
Confidence            6666666666666666666665543221      134455666666666666666666665 22111  13344455555


Q ss_pred             H-hcCCHHHHHHHhcC
Q psy10061        264 F-DEEDPEGARQALND  278 (325)
Q Consensus       264 ~-~~gd~~~~~~~~~~  278 (325)
                      + ..|+.+.+...+++
T Consensus       217 ~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          217 QIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHH
Confidence            4 46666666665555

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.7e-15  Score=127.80  Aligned_cols=192  Identities=16%  Similarity=0.072  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG-NR  136 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g-~~  136 (325)
                      ..++.+...|.++...|++++|..+|.+++...   .+    ..++..+|.+|...|++++|+.++++++.+....+ +.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   75 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY   75 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence            456788899999999999999999999999887   23    45899999999999999999999999999988874 66


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ...+.++..+|.++...+ +++|+.+|++++.+...              +.++...|++++|+..+++++...+     
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~~-----  136 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVNP-----  136 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCCH-----
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcCc-----
Confidence            667889999999999887 99999999999987543              4567788899999999999887532     


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                       ....++..+|.++...|++++|...|+++ ......  ..+...++.++ ..|+.+.+...+++
T Consensus       137 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          137 -EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             23457789999999999999999999998 333222  45677888887 69999999998876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.72  E-value=3.8e-15  Score=136.01  Aligned_cols=220  Identities=13%  Similarity=-0.025  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      ....+.....+.++...|++++|...+.+++.... .++....+.++..+|.+|...|++++|..++++++.+....|+.
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            33456677778889999999999999999988764 34556677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      ...+.++..+|.++...+ +++|+.+|++++.+.+..+..  .....++..+|.++...|++++|..++++++.+.+..+
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence            999999999999999887 999999999999999887654  45567888999999999999999999999999988766


Q ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc---cCCChHHHHHH--HHHHHH-hcCCHHHHHHHhcC
Q psy10061        214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN---CCEAPEVQTLE--KLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~---~~~~~e~~~l~--~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ... ...++..+|.++...|++++|..+++++ ..   ...........  .++..+ ..|+.+.+...+.+
T Consensus       170 ~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  240 (373)
T 1hz4_A          170 PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  240 (373)
T ss_dssp             GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            544 3467789999999999999999999997 22   21111222221  233334 68999999888765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.71  E-value=1e-15  Score=136.14  Aligned_cols=230  Identities=10%  Similarity=-0.082  Sum_probs=177.4

Q ss_pred             ccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcC-CHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAK-SFQQCKEYLL   84 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g-~~~~A~~~~~   84 (325)
                      +++++|++++.++.+......         ....+++++|...|.++              |.++...| ++++|..+|.
T Consensus        36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  115 (330)
T 3hym_B           36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS  115 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            577777777777765543211         00136666666666554              67788889 9999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061         85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS  163 (325)
Q Consensus        85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~  163 (325)
                      +++.+....      ..++..+|.+|...|++++|+.++++++.+.....      ..+..+|.++...+ +++|+.+|+
T Consensus       116 ~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          116 KATTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------LPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             HHHTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            988765432      34688999999999999999999999988754422      24667999999887 999999999


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061        164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL---LAIGRLAVALVLVQLARGDTVAAEK  240 (325)
Q Consensus       164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~~~~~gd~~~A~~  240 (325)
                      +++.+.+..      ..++..+|.++...|++++|+.++++++.+.+..+..   .....++..+|.++...|++++|..
T Consensus       184 ~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  257 (330)
T 3hym_B          184 QALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD  257 (330)
T ss_dssp             HHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            998875432      4678899999999999999999999999987665432   1223577899999999999999999


Q ss_pred             HHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        241 AFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       241 ~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +|+++ .....  ...++..++.++ ..|+.+.+...+++
T Consensus       258 ~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (330)
T 3hym_B          258 YHRQALVLIPQ--NASTYSAIGYIHSLMGNFENAVDYFHT  295 (330)
T ss_dssp             HHHHHHHHSTT--CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHhhCcc--chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99998 32222  245677888887 69999999999988

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=1.4e-15  Score=129.13  Aligned_cols=191  Identities=13%  Similarity=0.030  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+...|.++...|++++|+..|.+++.+....      ..++.++|.++...|++++|+.++++++.+...      -.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~   73 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALENGKTLVARTPR------YL   73 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cH
Confidence            467788999999999999999999988654432      568899999999999999999999999977321      23


Q ss_pred             HHHHHHHHHHhcc-----------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEEL-----------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       141 ~~l~~lg~~~~~~-----------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      .++.++|.++...           + +++|+.+|++++++.+..      ..++..+|.++..+|++++|+..|++++++
T Consensus        74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            4688999999888           7 999999999999986542      368889999999999999999999999987


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        209 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .   .+    ..++.++|.++...|++++|+..|+++ ....+.  ..+...++.++ ..|+.+.+...+++
T Consensus       148 ~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          148 E---DT----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             C---CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC-------------
T ss_pred             c---cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5   22    246688999999999999999999998 332222  35677888887 59999998888776

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=2.8e-15  Score=137.57  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             cccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEYLL   84 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~~~   84 (325)
                      .+++++|+++|+++.+......         ....+++++|.+.|.++              |.++...|++++|..+|.
T Consensus        80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3577777777777766543210         00135566666655543              445666677777777776


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061         85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS  163 (325)
Q Consensus        85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~  163 (325)
                      +++.....      .+.++.++|.+|...|++++|+.+|++++.+...      ....+.++|.++...+ +++|+..|+
T Consensus       160 ~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~  227 (388)
T 1w3b_A          160 KAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN------FLDAYINLGNVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             HHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66654321      1346677777777777777777777777654111      1223444455554444 555555555


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061        164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFK  243 (325)
Q Consensus       164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~  243 (325)
                      +++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+.      ...++.++|.++...|++++|...|+
T Consensus       228 ~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~  295 (388)
T 1w3b_A          228 RALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             HHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHhhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555443211      234444555555555555555555554443111      01133444444444555555555544


Q ss_pred             hh
Q psy10061        244 EW  245 (325)
Q Consensus       244 ~~  245 (325)
                      ++
T Consensus       296 ~a  297 (388)
T 1w3b_A          296 TA  297 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=3.8e-16  Score=132.63  Aligned_cols=184  Identities=14%  Similarity=0.013  Sum_probs=141.5

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      ...+++++|+.+|+++.+..        ++.   .+.+..+|.++...|++++|+.+|.+++.+....      ..++.+
T Consensus        16 ~~~g~~~~A~~~~~~al~~~--------p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~   78 (217)
T 2pl2_A           16 YALGRYDAALTLFERALKEN--------PQD---PEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LGGYMV   78 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHTTS--------SSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Confidence            33568999999999998754        333   3567889999999999999999999999876432      457899


Q ss_pred             HHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061        106 AIMMCKEL-----------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus       106 ~~~~y~~~-----------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      +|.+|..+           |++++|+..+++++++...      -..++.++|.++...+ +++|+.+|++++++.   +
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~  149 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE---D  149 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---c
Confidence            99999999           9999999999999987321      2357889999999988 999999999999986   2


Q ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +    ..++.++|.+|..+|++++|+..|++++.+.+..      ..++.++|.++...|++++|...|++.
T Consensus       150 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          150 T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTC--------------
T ss_pred             c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            2    3678899999999999999999999999874321      246788999999999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.69  E-value=2.1e-15  Score=136.72  Aligned_cols=221  Identities=10%  Similarity=-0.039  Sum_probs=145.5

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++|+.+|.++.+...        +.   ...+..+|.+|...|++++|..+|.+++.+...      ...++..+|.
T Consensus        78 g~~~~A~~~~~~al~~~p--------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~  140 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDP--------KH---MEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAV  140 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCT--------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC--------CC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Confidence            455555555555554321        11   234445678888899999999999988877533      1457888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH-----------------------------cCCHHH----------------HHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLE-----------------------------QGNREA----------------ASTVL  143 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~-----------------------------~g~~~~----------------aa~~l  143 (325)
                      +|...|++++|+.++++++.+...                             .|++..                .+.++
T Consensus       141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence            888888888888888877654221                             111221                13456


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      ..+|.++...+ +++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+.      ...++
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~  288 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSR  288 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Confidence            66777777666 888888888887764332      356777888888888888888888887775321      12456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhh----cccC-C-----ChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        223 VALVLVQLARGDTVAAEKAFKEW----GNCC-E-----APEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~~----~~~~-~-----~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..+|.++...|++++|..+|+++    +... .     .....+...|+.++ ..|+.+.+....++
T Consensus       289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            77888888888888888888876    2211 0     11145666777776 47888777777665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.69  E-value=3e-15  Score=122.89  Aligned_cols=163  Identities=15%  Similarity=0.046  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      -...|..+|.+|...|++++|+.+|.+++++....      ..++.++|.+|..+|++++|+..++++......   .  
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~--   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---S--   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---C--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---h--
Confidence            45789999999999999999999999999876432      468999999999999999999999998765322   1  


Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                       ..++..+|.++...+ ++.|+..+.+++.+....      ..++..+|.+|..+|++++|+..|++++++.+.      
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------  139 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------  139 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------
Confidence             346778888888776 999999999999876543      357889999999999999999999999987432      


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...++.++|.+|..+|++++|+++|+++
T Consensus       140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          140 FIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            1347789999999999999999999997

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.69  E-value=3.5e-15  Score=132.70  Aligned_cols=250  Identities=13%  Similarity=0.027  Sum_probs=181.1

Q ss_pred             hhhhhhHHHHHHhhchh----cc------ccccccHHHHHHHHHHHHhhhcccc---------cCCCC-CHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSL----ST------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKP-DYDSAADDYSK   65 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~----~~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~-~~~~A~~~y~~   65 (325)
                      ...+|..++.++-+.--    .+      +...+++++|+.++.++.+......         ....+ ++++|...|.+
T Consensus        37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  116 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK  116 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            35566666666543321    11      2233577888888877776543210         00134 77777777766


Q ss_pred             H--------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061         66 A--------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus        66 a--------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                      +              |.++...|++++|..+|.+++.+....      ...+..+|.+|...|++++|+.++++++.+..
T Consensus       117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            5              678899999999999999999887543      23567799999999999999999999987643


Q ss_pred             HcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY---KQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      .      -..++..+|.++...+ +++|+.++++++.+.+..++.   .....++..+|.+|...|++++|+.+|++++.
T Consensus       191 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  264 (330)
T 3hym_B          191 E------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV  264 (330)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            2      1457889999999887 999999999999998765543   22246889999999999999999999999998


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH--hcCCHHHHHH
Q psy10061        208 YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF--DEEDPEGARQ  274 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~--~~gd~~~~~~  274 (325)
                      +.+.      ...++..+|.++...|++++|..+|+++-...+ ....+...|+.++  ..|+.+.+..
T Consensus       265 ~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~a~~~  326 (330)
T 3hym_B          265 LIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSEAYIG  326 (330)
T ss_dssp             HSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC------
T ss_pred             hCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchhccCC
Confidence            7433      124678899999999999999999999833322 1234566777776  4777776543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.4e-15  Score=132.20  Aligned_cols=185  Identities=9%  Similarity=-0.011  Sum_probs=85.5

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIM  108 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~  108 (325)
                      +++++|+++|.++.+.....           ...+..+|.+|...|++++|+.+|.+++..   ..+....+.++..+|.
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNS-----------PYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGK   82 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCC-----------STTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHH
Confidence            45666666666655443220           013444455555555555555555555541   1233333444555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  187 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~  187 (325)
                      +|...|++++|+.++++++++....      ..++..+|.+|...+ +++|+.+|++++++...      ...++..+|.
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~  150 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKVFYELGQ  150 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHHHHHHHH
Confidence            5555555555555555555432211      124445555555444 55555555555443111      1234444552


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhh
Q psy10061        188 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD---TVAAEKAFKEW  245 (325)
Q Consensus       188 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd---~~~A~~~~~~~  245 (325)
                      .....+++++|+.+|++++.+.+...      .++..+|.++...|+   +++|...|+++
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELKPNIY------IGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            22223355555555555555433320      233344555555454   55555555553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=9.7e-15  Score=133.91  Aligned_cols=247  Identities=15%  Similarity=0.048  Sum_probs=188.2

Q ss_pred             hhhhhhHHHHHHhhc----hh-----c-cccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKH----SL-----S-TMTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~----~~-----~-~~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a   66 (325)
                      +..+|.+++.+|-+.    ..     + .+...+++++|++.|.++.+......         ..-.+++++|.+.|.++
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356666666666432    21     1 23334678888888888876543211         11147777777776654


Q ss_pred             --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                                    |.+|...|++++|...|.+++.+....      ..++.++|.++...|++++|+..+++++.+...
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence                          678899999999999999998875432      467899999999999999999999999876321


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                            -..++.++|.++...+ +++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.+.+.
T Consensus       236 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          236 ------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence                  2457889999999887 999999999999864332      357889999999999999999999999987432


Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .      ..++..+|.++...|++++|...|+++ ......  ..+...|+.++ ..|+.+.+...+++
T Consensus       304 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          304 H------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             C------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1      246788999999999999999999998 433332  45677888887 69999999888876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.67  E-value=1.9e-14  Score=129.09  Aligned_cols=257  Identities=13%  Similarity=0.037  Sum_probs=167.7

Q ss_pred             hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a   66 (325)
                      +..+|..++.++-+.-..    |      +...+++++|++++.++.+......         ....+++++|...|.++
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            355666666666543221    1      1223677888888888776543210         00124555555554443


Q ss_pred             -----------------------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q psy10061         67 -----------------------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT  117 (325)
Q Consensus        67 -----------------------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~  117 (325)
                                                   +.++...|++++|..+|.+++......      ..++..+|.+|...|+++
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A           98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPR  171 (359)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred             HhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHH
Confidence                                         455556666666666666665543321      245666677777777777


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHH
Q psy10061        118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ------AAEYISRAARMCV  190 (325)
Q Consensus       118 eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~------~~~~~~~lg~~~~  190 (325)
                      +|+.++++++.+..  .+    ..++..+|.++...+ +++|+.+|++++++.........      .......+|.++.
T Consensus       172 ~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  245 (359)
T 3ieg_A          172 KAISDLKAASKLKS--DN----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI  245 (359)
T ss_dssp             HHHHHHHHHHTTCS--CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777665421  11    246778888888777 99999999999987654422110      0112345688999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCC
Q psy10061        191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEED  268 (325)
Q Consensus       191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd  268 (325)
                      ..|++++|+..|++++.+.+.  +.......+..+|.++...|++++|...|+++ .....  ...+...++.++ ..|+
T Consensus       246 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          246 RDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCC
Confidence            999999999999999886543  33334456778999999999999999999998 33322  245777888887 6999


Q ss_pred             HHHHHHHhcC
Q psy10061        269 PEGARQALND  278 (325)
Q Consensus       269 ~~~~~~~~~~  278 (325)
                      .+.+...+++
T Consensus       322 ~~~A~~~~~~  331 (359)
T 3ieg_A          322 YDEAIQDYEA  331 (359)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.67  E-value=2.3e-14  Score=138.47  Aligned_cols=253  Identities=8%  Similarity=-0.048  Sum_probs=189.9

Q ss_pred             hhhhhhHHHHHHhhchh---cc------ccccccHHHHHHHHHHHHhhhccccc---------CCCCCHHHHHHHHHH--
Q psy10061          6 KKEEGMEYVKSAEKHSL---ST------MTSDRKKEEGMEYVKSAEKHLKTSLL---------KWKPDYDSAADDYSK--   65 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~---~~------~~~~~~~~eA~~l~~~A~~~~~~~~~---------~~~~~~~~A~~~y~~--   65 (325)
                      +..+|..++.++.+.-.   .|      +...+++++|+++|.++.+.......         ...+++++|.+.|.+  
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35666777766655311   12      22346899999999998765432110         013666777666554  


Q ss_pred             ------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         66 ------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        66 ------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                                  ++.+|...|++++|..+|.++..+...  +    ..++..++.+|...|++++|+.++++++.+... 
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-  439 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ--F----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-  439 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence                        467888999999999999998875432  1    347888999999999999999999998765332 


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                       +    ...+..+|.+|...+ +++|+.+|++++++....      ..++..+|.+|.+.|++++|+.+|++++++.++.
T Consensus       440 -~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          440 -T----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             -C----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             -c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence             1    346788999998887 999999999999875432      3578899999999999999999999999987765


Q ss_pred             c-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        213 E-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       213 ~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      + ++.....++..+|.++...|++++|.+.|+++ .....  ...+...|+.++ ..|+.+.+...+++
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4 33322457889999999999999999999997 33222  245677888887 59999999999887

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.66  E-value=3.3e-14  Score=126.17  Aligned_cols=222  Identities=7%  Similarity=-0.055  Sum_probs=164.4

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|+.+|+++.+....           -...+..+|.++...|++++|..+|.+++.+....      ..++..+|
T Consensus        34 ~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la   96 (327)
T 3cv0_A           34 LANLAEAALAFEAVCQAAPE-----------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAALA   96 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------HHHHHHHH
Confidence            45899999999998875422           23456678888999999999999999988774321      45788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH-----------------------------HHHcCCHHHHH--------------HHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATL-----------------------------FLEQGNREAAS--------------TVLE  144 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~-----------------------------~~~~g~~~~aa--------------~~l~  144 (325)
                      .+|...|++++|+.++++++..                             +...|++..+.              ..+.
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  176 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA  176 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence            8999999999999888888753                             22223333333              3455


Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV  223 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  223 (325)
                      .+|.++...+ +++|+.++++++++....      ..++..+|.++...|++++|+.+|++++.+.+.      ...++.
T Consensus       177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~  244 (327)
T 3cv0_A          177 SLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMY  244 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence            6777777776 999999999998875432      357888999999999999999999998876432      123567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhh----cccCC-Ch------HHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        224 ALVLVQLARGDTVAAEKAFKEW----GNCCE-AP------EVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       224 ~lg~~~~~~gd~~~A~~~~~~~----~~~~~-~~------e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .+|.++...|++++|...|+++    +.... ..      ...+...++.++ ..|+.+.+....++
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8999999999999999999986    22111 11      455677888887 58999999888776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=1.4e-15  Score=151.17  Aligned_cols=165  Identities=15%  Similarity=0.120  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      +.-+++|..+|.+|..+|++++|+.+|++++++....      +.++.++|.+|..+|++++|+.+|++|+++...    
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----   75 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----   75 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            4557889999999999999999999999999886543      568999999999999999999999999987322    


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                        -+.++.++|.+|...+ +++|+++|++|+++....      ..++.++|.+|..+|++++|+..|++++++.+.    
T Consensus        76 --~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~----  143 (723)
T 4gyw_A           76 --FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD----  143 (723)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence              2457999999999988 999999999999985442      468999999999999999999999999987432    


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                        ...++.++|.++...|++++|.+.++++
T Consensus       144 --~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          144 --FPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             --CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             --ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence              1246789999999999999999999985

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=4.9e-15  Score=134.62  Aligned_cols=246  Identities=11%  Similarity=-0.012  Sum_probs=182.5

Q ss_pred             hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy10061          6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS   75 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~   75 (325)
                      +..+|..++.+|-+.-..    |      +...+++++|+++|.++.+....        .   ...+..+|.+|...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~---~~~~~~l~~~~~~~g~  148 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------N---LKALMALAVSYTNTSH  148 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------C---HHHHHHHHHHHHcccc
Confidence            466777777777653321    2      22347899999999999886522        1   4568899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061         76 FQQCKEYLLKAANCYETNKSAY----HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~~~~~----~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      +++|..+|.+++.+........    +.+..+..++.+|...|++++|+.++++++.+.....+    ..++..+|.++.
T Consensus       149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~  224 (365)
T 4eqf_A          149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFH  224 (365)
T ss_dssp             HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHH
Confidence            9999999999998866533221    34667778899999999999999999999988543323    347889999999


Q ss_pred             ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061        152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL  230 (325)
Q Consensus       152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~  230 (325)
                      ..+ +++|+.+|++++++.+..      ..++..+|.+|...|++++|+.+|++++.+.+..      ..++.++|.+|.
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~  292 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCI  292 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHH
Confidence            887 999999999999986543      4588999999999999999999999999985543      246788999999


Q ss_pred             hcCCHHHHHHHHHhh----cccCC-------ChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        231 ARGDTVAAEKAFKEW----GNCCE-------APEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       231 ~~gd~~~A~~~~~~~----~~~~~-------~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..|++++|..+|+++    +...+       .....+...|+.++ ..|+.+.+..+.++
T Consensus       293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999999997    22211       11246777888987 59999999998887

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.66  E-value=6.3e-14  Score=130.56  Aligned_cols=193  Identities=13%  Similarity=0.028  Sum_probs=130.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS  149 (325)
Q Consensus        70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~  149 (325)
                      +...|++++|+.+|.+++.+...      ...++..+|.+|...|++++|+.++++++....  .+    ..++..+|.+
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~  220 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKN--DN----TEAFYKISTL  220 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SC----HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHH
Confidence            44455555555555555443221      123455566666666666666666666665421  11    3467778888


Q ss_pred             HhccC-HHHHHHHHHHHHHHHhcCCChhhH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        150 LEELK-SDAALTLYSRAADVAHGEDNYKQA------AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       150 ~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      |...+ +++|+.+|++++.+..........      ...+..+|.++...|++++|+.+|++++.+.+.  ++......+
T Consensus       221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~  298 (450)
T 2y4t_A          221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSK  298 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHH
Confidence            88877 999999999998775543211110      112244599999999999999999999886432  333334578


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        223 VALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..+|.++...|++++|...++++ .....  ...++..++.++ ..|+.+.+...+++
T Consensus       299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD--NVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            89999999999999999999997 33322  245677888887 69999999988876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=4.7e-15  Score=128.80  Aligned_cols=221  Identities=9%  Similarity=-0.060  Sum_probs=177.8

Q ss_pred             chhhhhhHHHHHHhhchhc----ccc------ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy10061          5 RKKEEGMEYVKSAEKHSLS----TMT------SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK   74 (325)
Q Consensus         5 ~~~~~~~~~~~~ae~~~~~----~~~------~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g   74 (325)
                      .+..+|..++.++-+.-..    |+.      ..+++++|++++.++.+..        ++..-...+|...|.+|...|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--------NATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CTTTCCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------CchhHHHHHHHHHHHHHHHcc
Confidence            3567888888888665432    322      2378999999999998832        222334677899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcc
Q psy10061         75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA-KSLEEL  153 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg-~~~~~~  153 (325)
                      ++++|+.+|.+++.+....      ..++.++|.+|...|++++|+.++++++.+  .-.    -..++..+| .+|...
T Consensus        89 ~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~----~~~~~~~l~~~~~~~~  156 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT----DPKVFYELGQAYYYNK  156 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC----CHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC----cHHHHHHHHHHHHHHH
Confidence            9999999999999876543      358999999999999999999999999877  112    245788999 888877


Q ss_pred             CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHH
Q psy10061        154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE---FDKAADLIRQEIGYHQESEH--LLAIGRLAVALVLV  228 (325)
Q Consensus       154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~  228 (325)
                      ++++|+.+|++++++.+..      ..++..+|.++..+|+   +++|+..|++++.+....++  ......++..+|.+
T Consensus       157 ~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  230 (272)
T 3u4t_A          157 EYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY  230 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            8999999999999986543      4678899999999999   99999999999999876655  33345688899999


Q ss_pred             HHhcCCHHHHHHHHHhh-cccCCC
Q psy10061        229 QLARGDTVAAEKAFKEW-GNCCEA  251 (325)
Q Consensus       229 ~~~~gd~~~A~~~~~~~-~~~~~~  251 (325)
                      |...|++++|.++|+++ ....+.
T Consensus       231 ~~~~~~~~~A~~~~~~al~~~p~~  254 (272)
T 3u4t_A          231 YTINRDKVKADAAWKNILALDPTN  254 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCccH
Confidence            99999999999999998 444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.65  E-value=8e-15  Score=132.85  Aligned_cols=223  Identities=11%  Similarity=0.053  Sum_probs=168.5

Q ss_pred             hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHH-
Q psy10061          6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSK-   65 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~-   65 (325)
                      +..+|..++.++-+.-..    |      +...+++++|+++|.++.+......         ....+++++|.+.|.+ 
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW  158 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467777777777654321    2      2234799999999999988764310         1114777777777775 


Q ss_pred             -----------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Q psy10061         66 -----------------------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL  116 (325)
Q Consensus        66 -----------------------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~  116 (325)
                                                   ++.++ ..|++++|..+|.+++.+.....    .+.++.++|.+|...|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~  233 (368)
T 1fch_A          159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEY  233 (368)
T ss_dssp             HHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCH
T ss_pred             HHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCH
Confidence                                         33344 66777777777777776654322    256889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                      ++|+.++++++.+...      -..++..+|.++...+ +++|+.+|++++.+.+..      ..++..+|.+|..+|++
T Consensus       234 ~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          234 DKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCH
Confidence            9999999999887322      1457899999999887 999999999999875432      36889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        196 DKAADLIRQEIGYHQESEHLLAI-----GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       196 ~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++|+.+|++++.+.+....+...     ..++..+|.++...|+++.|...+++.
T Consensus       302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            99999999999988765333222     467889999999999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.64  E-value=1.8e-13  Score=122.67  Aligned_cols=240  Identities=10%  Similarity=0.115  Sum_probs=143.9

Q ss_pred             ccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA--------------ATCFKGAKSFQQCKEYL   83 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a--------------~~~y~~~g~~~~A~~~~   83 (325)
                      ..+++++|+++|.++.+......         ....+++++|...|.++              |.++...|++++|...|
T Consensus        15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   94 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF   94 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence            34689999999999988653310         00124555555554443              33445555555555555


Q ss_pred             HHHHHHHHhcCChHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Q psy10061         84 LKAANCYETNKSAYHA---------AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK  154 (325)
Q Consensus        84 ~~a~~~~~~~~~~~~a---------a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~  154 (325)
                      .+++.+....++....         ...+...+.++...|++++|+.++++++.....  +    ..++..+|.++...+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW--D----AELRELRAECFIKEG  168 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--c----hHHHHHHHHHHHHCC
Confidence            5554332200000000         111122245555556666666666555544221  1    235666777777776


Q ss_pred             -HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHH
Q psy10061        155 -SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA------IGRLAVALVL  227 (325)
Q Consensus       155 -~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~  227 (325)
                       +++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+.......      .......+|.
T Consensus       169 ~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          169 EPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             CHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence             888888888887653321      357788899999999999999999988876543322110      1112345688


Q ss_pred             HHHhcCCHHHHHHHHHhh-cccCCChHH--HHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        228 VQLARGDTVAAEKAFKEW-GNCCEAPEV--QTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       228 ~~~~~gd~~~A~~~~~~~-~~~~~~~e~--~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ++...|++++|...|+++ .........  .+...++.++ ..|+.+.+...+++
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  297 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE  297 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            899999999999999997 333333222  3455677776 58999998888876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.64  E-value=9.6e-14  Score=129.31  Aligned_cols=239  Identities=11%  Similarity=0.118  Sum_probs=152.2

Q ss_pred             cccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHH--------------HHHHHHhcCCHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSK--------------AATCFKGAKSFQQCKEYLL   84 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~--------------a~~~y~~~g~~~~A~~~~~   84 (325)
                      .+++++|+.+|.++.+......         ....+++++|...|.+              +|.+|...|++++|..+|.
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  118 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK  118 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3567777777777765432200         0012444444444443              3456666777777777776


Q ss_pred             HHHHHHHhcC---Ch-HH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-
Q psy10061         85 KAANCYETNK---SA-YH-----AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-  154 (325)
Q Consensus        85 ~a~~~~~~~~---~~-~~-----aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-  154 (325)
                      +++.+.....   .. ..     ....+...|.+|...|++++|+.++++++.+...      -..++..+|.+|...+ 
T Consensus       119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~  192 (450)
T 2y4t_A          119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGE  192 (450)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCC
Confidence            6654322110   00 00     0112334466677777777777777776654211      1245777888888777 


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHH
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA------IGRLAVALVLV  228 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~~  228 (325)
                      +++|+.+|++++.+....      ..++..+|.+|...|++++|+.+|++++.+.+.......      .......+|.+
T Consensus       193 ~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  266 (450)
T 2y4t_A          193 PRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE  266 (450)
T ss_dssp             GGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876432      367889999999999999999999999876443221110      11123456999


Q ss_pred             HHhcCCHHHHHHHHHhh-cccCCChH--HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        229 QLARGDTVAAEKAFKEW-GNCCEAPE--VQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       229 ~~~~gd~~~A~~~~~~~-~~~~~~~e--~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +...|++++|...|+++ ........  ..+...++.++ ..|+.+.+...+++
T Consensus       267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  320 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE  320 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999997 33333322  34667788887 69999999888776

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=1.4e-13  Score=118.21  Aligned_cols=202  Identities=14%  Similarity=0.097  Sum_probs=163.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      ..+....+..+...|.++...|++++|..+|.+++.....      ...++..+|.+|...|++++|+.++++++.+...
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  103 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSR  103 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3566677899999999999999999999999999877432      1568899999999999999999999999877322


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                            -..++..+|.++...+ +++|+.+|++++.    .+.......++..+|.++...|++++|+.+|++++...+.
T Consensus       104 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          104 ------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             ------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence                  1457889999999887 9999999999987    2222334578899999999999999999999999886422


Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .      ..++..+|.++...|++++|...|+++ ......  ...+..++..+ ..|+.+.+...+++
T Consensus       174 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          174 Q------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            1      246678999999999999999999998 333333  34556677776 59999999998887

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.63  E-value=2e-13  Score=119.16  Aligned_cols=217  Identities=8%  Similarity=0.018  Sum_probs=172.5

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKG----AKSFQQCKEYLLKAANCYETNKSAYHAAKH  102 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~  102 (325)
                      ..+++++|+++|++|.+   .      ++.    ..+..+|.+|..    .+++++|..+|.++++.    ++    ..+
T Consensus        18 ~~~~~~~A~~~~~~a~~---~------~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a   76 (273)
T 1ouv_A           18 KEKDFTQAKKYFEKACD---L------KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY----SNG   76 (273)
T ss_dssp             HTTCHHHHHHHHHHHHH---T------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHH
T ss_pred             hCCCHHHHHHHHHHHHH---C------CCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC----HHH
Confidence            34689999999999987   2      121    457789999999    99999999999999865    22    568


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCC
Q psy10061        103 LEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus       103 ~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      +.++|.+|..    .+++++|+.+|+++++.    ++    ..++.++|.+|..    .+ +++|+.+|+++++.    +
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~  144 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N  144 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C
Confidence            8999999999    99999999999999875    44    4578999999987    65 99999999999974    2


Q ss_pred             ChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061        174 NYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW  245 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~  245 (325)
                      +    ..++.++|.+|..    .+++++|+.+|+++++.    ++    ..++..+|.+|..    .+++++|..+|+++
T Consensus       145 ~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  212 (273)
T 1ouv_A          145 D----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGATKNFKEALARYSKA  212 (273)
T ss_dssp             C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             c----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            2    3578899999999    99999999999999874    22    2467889999999    99999999999998


Q ss_pred             cccCCChHHHHHHHHHHHH-h----cCCHHHHHHHhcChhhhcccHHHHHH
Q psy10061        246 GNCCEAPEVQTLEKLLQAF-D----EEDPEGARQALNDPFIKHMDVEYSRL  291 (325)
Q Consensus       246 ~~~~~~~e~~~l~~L~~a~-~----~gd~~~~~~~~~~~~~~~l~~~~~~~  291 (325)
                      -...+   ......|+..+ .    .+|.+.+...+++.+-...+.....+
T Consensus       213 ~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          213 CELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             HHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            22221   45667788887 4    78888888888874433333333333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.62  E-value=4e-14  Score=134.34  Aligned_cols=234  Identities=10%  Similarity=-0.002  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy10061         31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF-QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMM  109 (325)
Q Consensus        31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~  109 (325)
                      ..+..+.+.++...+....    ...+.-+..+...|.+|...|++ ++|..+|.+++.+....      +.++.++|.+
T Consensus        77 ~~~~~~~~~~al~~l~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~  146 (474)
T 4abn_A           77 QQDVQEEMEKTLQQMEEVL----GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEV  146 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh----ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Confidence            3355555566555554321    12233467788899999999999 99999999999876432      4689999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------C-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL---------K-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~---------~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      |...|++++|+.+|++++++.   .+    ..++.++|.++...         + +++|+.+|++++++....      .
T Consensus       147 ~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~  213 (474)
T 4abn_A          147 YWKKGDVTSAHTCFSGALTHC---KN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------G  213 (474)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTC---CC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHcCCHHHHHHHHHHHHhhC---CC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------H
Confidence            999999999999999998763   22    37899999999988         7 999999999999986543      3


Q ss_pred             HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC
Q psy10061        180 EYISRAARMCVRV--------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE  250 (325)
Q Consensus       180 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~  250 (325)
                      .++..+|.+|..+        |++++|+.+|++++.+.+..   .....+++++|.+|...|++++|...|+++ .....
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            6889999999999        99999999999999874311   122357789999999999999999999998 33322


Q ss_pred             ChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061        251 APEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       251 ~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~~~~l~  296 (325)
                      .  ..+...++.++ ..|+.+.+.....+-    ....+..++..|.
T Consensus       291 ~--~~a~~~l~~~~~~lg~~~eAi~~~~~~----~~~~l~~~~~~l~  331 (474)
T 4abn_A          291 W--PEPQQREQQLLEFLSRLTSLLESKGKT----KPKKLQSMLGSLR  331 (474)
T ss_dssp             C--HHHHHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHTCC
T ss_pred             C--HHHHHHHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHhch
Confidence            2  34566677776 477777776655441    1233455555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.9e-13  Score=126.95  Aligned_cols=246  Identities=9%  Similarity=0.020  Sum_probs=187.7

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|.+++.++.+....     -++-.........++.++...|+++++..++.+++.+..+.++....+.++.++|
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la  142 (434)
T 4b4t_Q           68 MGAKDKLREFIPHSTEYMMQ-----FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA  142 (434)
T ss_dssp             HTCHHHHHHHHHHTHHHHHT-----SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            46788888888888777654     2344445566777788888899999999999999999999988888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY-KQAAEYISRA  185 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~l  185 (325)
                      .+|...|++++|+.+++++.......++....+.++..+|.+|...+ +++|..+|++++.+.....+. ...+.++..+
T Consensus       143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  222 (434)
T 4b4t_Q          143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS  222 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999887 999999999999998887654 5557788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhcCCHHHHH-HHHHhh--cccCCChHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHL--LAIGRLAVALVLVQLARGDTVAAE-KAFKEW--GNCCEAPEVQTLEKL  260 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~~~gd~~~A~-~~~~~~--~~~~~~~e~~~l~~L  260 (325)
                      |.++...|+|.+|..+|.++++.+...+..  ..........+.++.......... ..+..-  .......+......|
T Consensus       223 g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (434)
T 4b4t_Q          223 GILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAV  302 (434)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHH
Confidence            999999999999999999999998876532  111111122222222222222222 222221  222344556667777


Q ss_pred             HHHHhcCCHHHHHHHhcC
Q psy10061        261 LQAFDEEDPEGARQALND  278 (325)
Q Consensus       261 ~~a~~~gd~~~~~~~~~~  278 (325)
                      ..++..++...+...+..
T Consensus       303 ~~~~~~~~l~~~~~~~~~  320 (434)
T 4b4t_Q          303 AEAYNNRSLLDFNTALKQ  320 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHH
Confidence            788777777777666543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=2e-13  Score=114.49  Aligned_cols=198  Identities=10%  Similarity=0.062  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      +.-...+...|.++...|++++|..+|.+++......      ..++..+|.+|...|++++|+.++++++.+...    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----   74 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----   74 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----
Confidence            4456778899999999999999999999998875432      458899999999999999999999999876322    


Q ss_pred             HHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        137 EAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                        -..++..+|.++... + +++|+.+++++++    .........++..+|.++...|++++|+.+|++++...+..  
T Consensus        75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--  146 (225)
T 2vq2_A           75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--  146 (225)
T ss_dssp             --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred             --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence              134788999999988 7 9999999999987    22223335688899999999999999999999998864321  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                          ..++..+|.++...|++++|...++++ .... ....  .+..+...+ ..|+.+.+....+.
T Consensus       147 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          147 ----PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHH
Confidence                246778999999999999999999997 3333 3333  344455555 58999988887766

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.61  E-value=1.1e-13  Score=131.74  Aligned_cols=219  Identities=13%  Similarity=0.001  Sum_probs=170.1

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|+++|.++.+..        ++    ...+..+|.++...|++++|..+|.+++......      ..++..+|
T Consensus       256 ~~~~~~A~~~~~~~~~~~--------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  317 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLH--------PT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRG  317 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--------CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC--------CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHH
Confidence            468899999999887753        33    4567788999999999999999999988765432      45788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|...|++++|+.++++++.+.....      .++..+|.++...+ +++|+.+|++++++....      ..++..+|
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~  385 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENV------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFA  385 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHH
Confidence            999999999999999999987643322      46788999988887 999999999999875443      24778889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHhh-cccCCChHHH
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR----------GDTVAAEKAFKEW-GNCCEAPEVQ  255 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----------gd~~~A~~~~~~~-~~~~~~~e~~  255 (325)
                      .++...|++++|+.+|++++.+.+...........+..+|.++...          |++++|...|+++ ......  ..
T Consensus       386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~  463 (537)
T 3fp2_A          386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS--EQ  463 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC--HH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC--HH
Confidence            9999999999999999999998776543222212345678888888          9999999999997 333222  35


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        256 TLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       256 ~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +...|+.++ ..|+.+.+...+++
T Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          464 AKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHH
Confidence            667788887 58999998888876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=4.2e-14  Score=133.60  Aligned_cols=219  Identities=16%  Similarity=0.041  Sum_probs=170.3

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|++++.++.+..        ++    ...+..+|.+|...|++++|...|.+++......      ..++..+|
T Consensus       250 ~~~~~~A~~~~~~~l~~~--------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  311 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELF--------PR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRG  311 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHC--------CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhC--------cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHH
Confidence            467888888888876643        33    5667778888888888888888888887654332      34788889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|...|++++|+.++++++.+....      ..++..+|.++...+ +++|+.+|++++......      ..++..+|
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la  379 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFA  379 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHH
Confidence            99999999999999999988753321      236888999998887 999999999999876543      25788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHhh-cccCCChHHHHHHHHHH
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA---RGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQ  262 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~  262 (325)
                      .++...|++++|+.+|++++.+.+..........++..+|.++..   .|++++|...|+++ ......  ..+...++.
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~  457 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS--EQAKIGLAQ  457 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc--HHHHHHHHH
Confidence            999999999999999999998876543322222367889999999   99999999999997 332222  346677888


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      ++ ..|+.+.+...+++
T Consensus       458 ~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          458 MKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHH
Confidence            87 69999999998886

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=8.2e-14  Score=119.59  Aligned_cols=193  Identities=12%  Similarity=-0.006  Sum_probs=157.0

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+++|.++.+....        .   ...+..+|.+|...|++++|..+|.+++.....      ...++..+
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~--------~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l  111 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPS--------S---ADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNY  111 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCC--------h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHH
Confidence            446899999999999876422        1   467888999999999999999999999887542      14678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|...|++++|+.++++++.    .+........+..+|.++...+ +++|+.+|++++++....      ..++..+
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l  181 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEM  181 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHH
Confidence            9999999999999999999986    3334445678899999999887 999999999999875432      4578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCCh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAP  252 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~  252 (325)
                      |.++...|++++|+.++++++...+.      ....+..++.++...|++++|..+++++ ..+....
T Consensus       182 a~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999998774321      1235677999999999999999999998 4444333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.59  E-value=2e-13  Score=121.09  Aligned_cols=222  Identities=12%  Similarity=0.092  Sum_probs=165.1

Q ss_pred             hhhhhhHHHHHHhhchhc----c------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS----T------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~----~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a   66 (325)
                      +..+|..++.++-+.-..    |      +...+++++|++++.++.+......         ....+++++|...|.++
T Consensus        36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  115 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW  115 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456777777777553321    2      2234789999999999988754310         11146777777777665


Q ss_pred             HH-----------------------------HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q psy10061         67 AT-----------------------------CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT  117 (325)
Q Consensus        67 ~~-----------------------------~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~  117 (325)
                      ..                             ++...|++++|..++.+++.....      ...++..+|.+|...|+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~  189 (327)
T 3cv0_A          116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN------DAQLHASLGVLYNLSNNYD  189 (327)
T ss_dssp             HHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccHH
Confidence            42                             255566667777777776655432      2467888999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH
Q psy10061        118 DVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD  196 (325)
Q Consensus       118 eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  196 (325)
                      +|+.++++++.+...      -..++..+|.++...+ +++|+.+|++++.+.+..      ..++..+|.+|..+|+++
T Consensus       190 ~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          190 SAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHH
Confidence            999999999876321      1357889999999887 999999999999875432      357889999999999999


Q ss_pred             HHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        197 KAADLIRQEIGYHQESEHLLA------IGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       197 ~A~~~~~~al~~~~~~~~~~~------~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +|+.+|++++.+.+.......      ...++..+|.++...|+++.|...+++.
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999998766332221      4567889999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=4.7e-13  Score=112.14  Aligned_cols=195  Identities=10%  Similarity=-0.041  Sum_probs=157.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|++++.++.+....       +    ...+..+|.+|...|++++|..+|.+++.+....      ..++..+
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~-------~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l   82 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPK-------N----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------AEINNNY   82 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCcc-------c----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHH
Confidence            346899999999999886532       1    4578889999999999999999999998875432      4578899


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        107 IMMCKEL-NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       107 ~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      |.+|... |++++|+.++++++.    .+........+..+|.++...+ +++|+.+++++++.....      ..++..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~  152 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKE  152 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHH
Confidence            9999999 999999999999987    3333344567899999999887 999999999999875432      357889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQ-ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      +|.++...|++++|+.++++++.+.+ ..      ...+..++.++...|+++.|..+++.. ..+.+..+.
T Consensus       153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  218 (225)
T 2vq2_A          153 LARTKMLAGQLGDADYYFKKYQSRVEVLQ------ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL  218 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999988654 21      123466888899999999999999987 344444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=7.1e-14  Score=118.94  Aligned_cols=184  Identities=14%  Similarity=0.042  Sum_probs=144.8

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|+++|.++.+...        +.   ...+..+|.++...|++++|..+|.+++.+...      ...++..+
T Consensus        35 ~~~~~~~A~~~~~~~l~~~~--------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l   97 (243)
T 2q7f_A           35 EFGDYEKAAEAFTKAIEENK--------ED---AIPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGA   97 (243)
T ss_dssp             -------CCTTHHHHHTTCT--------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHhCc--------cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHH
Confidence            34689999999998877432        11   467788899999999999999999999877543      24678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|...|++++|+.++++++.+...  +    ..++..+|.++...+ +++|+.++++++.+....      ..++..+
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l  165 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGME--N----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQF  165 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCC--S----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHH
Confidence            99999999999999999999876432  1    346888999998887 999999999999875532      3578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      |.++...|++++|+.+|++++...+.      ...++..+|.++...|++++|..+|+++
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDPG------HADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999876332      1246788999999999999999999997

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.57  E-value=1.9e-13  Score=118.61  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      .+.+...|..+...|+|++|+..|.+++..+..   ......++..+|.+|..+|++++|+..|++++.++.....   .
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~   88 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---V   88 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---H
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---h
Confidence            345667788888999999999999998776543   2234678999999999999999999999999988654433   3


Q ss_pred             HHHHHHHHHHHhc--------cC-HHHHHHHHHHHHHHHhcCCChhhHH-----------HHHHHHHHHHHHcCCHHHHH
Q psy10061        140 STVLEKGAKSLEE--------LK-SDAALTLYSRAADVAHGEDNYKQAA-----------EYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       140 a~~l~~lg~~~~~--------~~-~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~lg~~~~~~g~~~~A~  199 (325)
                      ..++..+|.++..        .+ +++|+..|++++..++.......+.           ..+..+|.+|...|+|++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            4578899999987        66 9999999999999887654322111           12278999999999999999


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHhh-cccCCChHHH-HHHHHHHHH
Q psy10061        200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR----------GDTVAAEKAFKEW-GNCCEAPEVQ-TLEKLLQAF  264 (325)
Q Consensus       200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----------gd~~~A~~~~~~~-~~~~~~~e~~-~l~~L~~a~  264 (325)
                      ..|++++...+...   ....+++.+|.+|...          |++++|...|+++ ..+.++.... +...|....
T Consensus       169 ~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~  242 (261)
T 3qky_A          169 VTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR  242 (261)
T ss_dssp             HHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            99999998754422   1335678899999977          9999999999998 6666555443 333344443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.57  E-value=1.4e-12  Score=112.98  Aligned_cols=155  Identities=6%  Similarity=-0.105  Sum_probs=121.1

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+++++|+++|.++.+...       .+.+.-...+...|.+|...|++++|..+|.+++.+...      -..++..+|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la   84 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLG   84 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHH
Confidence            4789999999999987642       334566788899999999999999999999999987543      145789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|...|++++|+.++++++.+....      ..++..+|.+|...+ +++|+.+|++++++.....      .... ..
T Consensus        85 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~-~~  151 (275)
T 1xnf_A           85 IYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSL-WL  151 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHH-HH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHH-HH
Confidence            99999999999999999999874322      357889999998887 9999999999998765431      1111 22


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q psy10061        187 RMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      .++...|++++|+.++++++..
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A          152 YLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhc
Confidence            2335668888888888777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.57  E-value=1e-13  Score=120.32  Aligned_cols=209  Identities=13%  Similarity=0.085  Sum_probs=157.9

Q ss_pred             hhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA   86 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a   86 (325)
                      +..++.++..|...     ...++|++|+++|.++.+..        ++.+...+.+..+|.+|...|++++|+..|.++
T Consensus        12 ~~~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   78 (261)
T 3qky_A           12 HSSPQEAFERAMEF-----YNQGKYDRAIEYFKAVFTYG--------RTHEWAADAQFYLARAYYQNKEYLLAASEYERF   78 (261)
T ss_dssp             CSSHHHHHHHHHHH-----HHTTCHHHHHHHHHHHGGGC--------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34445555555442     23468999999999988765        333455788899999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHH
Q psy10061         87 ANCYETNKSAYHAAKHLEQAIMMCKE--------LNDLTDVENLAKQAATLFLEQGNREAAS-----------TVLEKGA  147 (325)
Q Consensus        87 ~~~~~~~~~~~~aa~~~~~~~~~y~~--------~g~~~eA~~~~~~A~~~~~~~g~~~~aa-----------~~l~~lg  147 (325)
                      +..+....   ....++..+|.+|..        +|++++|+.+|++++..+........+.           ..+..+|
T Consensus        79 l~~~p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           79 IQIYQIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             HHHCTTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98875432   345789999999999        9999999999999998876554433322           1237889


Q ss_pred             HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcccHH
Q psy10061        148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----------KEFDKAADLIRQEIGYHQESEHLL  216 (325)
Q Consensus       148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~  216 (325)
                      .+|...+ +++|+.+|+++++.++...   ....++..+|.+|..+          |++++|+.+|++++..++...   
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---  229 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP---  229 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT---
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh---
Confidence            9999887 9999999999999876542   2356888999999977          999999999999998765432   


Q ss_pred             HHHHHHHHHHHHHHhcCCHHH
Q psy10061        217 AIGRLAVALVLVQLARGDTVA  237 (325)
Q Consensus       217 ~~~~~~~~lg~~~~~~gd~~~  237 (325)
                      ....+...++.++...+++++
T Consensus       230 ~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          230 LLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            122344566777666655544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.57  E-value=2.8e-13  Score=128.88  Aligned_cols=219  Identities=15%  Similarity=0.135  Sum_probs=172.1

Q ss_pred             hhhhhHHHHHHhhchhc---------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHH
Q psy10061          7 KEEGMEYVKSAEKHSLS---------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQ   77 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~---------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~   77 (325)
                      ..+|..++.++-+.-..         .+...+++++|++++.++.+....        .   ...+...|.+|...|+++
T Consensus       259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--------Y---PPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--------C---HHHHHHHHHHHHhcCCHH
Confidence            45677777766553321         233457899999999999876532        2   346888999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HH
Q psy10061         78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SD  156 (325)
Q Consensus        78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~  156 (325)
                      +|...|.+++.+....      ..++..+|.+|...|++++|+.++++++.+....      ..++..+|.++...+ ++
T Consensus       328 ~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             HHHHHHHHHHHHCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHH
Confidence            9999999999876543      2578899999999999999999999999874332      346888999999887 99


Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        157 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV----------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       157 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      +|+.+|++++++.............+..+|.++...          |++++|+.+|++++.+.+..      ..++..+|
T Consensus       396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~  469 (537)
T 3fp2_A          396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGLA  469 (537)
T ss_dssp             HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            999999999999987665444445667889999999          99999999999999874321      24678899


Q ss_pred             HHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        227 LVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      .+|...|++++|...|+++ .......+.
T Consensus       470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          470 QLKLQMEKIDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999999999999998 333333333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.8e-13  Score=128.43  Aligned_cols=244  Identities=14%  Similarity=0.081  Sum_probs=163.9

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSA--YHAAKHLE  104 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~--~~aa~~~~  104 (325)
                      ..|++++|+++|++|+++.+....  .......+..|.++|.+|..+|++++|..+|.+++.+.+.....  ...+.++.
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~~~--~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~  140 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQEHA--DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC  140 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSG--GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence            347999999999999998765210  12234456789999999999999999999999999999876532  23456777


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHHH-----------------HcCCHHHHHHH--------------HHHHHHHHh
Q psy10061        105 QAIMMCKEL--NDLTDVENLAKQAATLFL-----------------EQGNREAASTV--------------LEKGAKSLE  151 (325)
Q Consensus       105 ~~~~~y~~~--g~~~eA~~~~~~A~~~~~-----------------~~g~~~~aa~~--------------l~~lg~~~~  151 (325)
                      +.|.++...  +++++|+.+|++|+++..                 ..++...+...              +..+|..+.
T Consensus       141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~  220 (472)
T 4g1t_A          141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH  220 (472)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            787776654  469999999999987521                 12222222222              223333332


Q ss_pred             cc----C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH-HHH-------
Q psy10061        152 EL----K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAI-------  218 (325)
Q Consensus       152 ~~----~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~-------  218 (325)
                      ..    + +++|+.+|++++.+....      ..++.++|.+|...|++++|+..|++++++.+..... ...       
T Consensus       221 ~~~~~~~~~~~a~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          221 KMREEGEEEGEGEKLVEEALEKAPGV------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             HCC------CHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            21    2 667777777777654332      3578899999999999999999999998764331100 000       


Q ss_pred             ---------------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCC-ChHHHHH
Q psy10061        219 ---------------------------------------GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCE-APEVQTL  257 (325)
Q Consensus       219 ---------------------------------------~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~-~~e~~~l  257 (325)
                                                             ..++..+|.+|...|++++|+++|+++ ..... .....+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~  374 (472)
T 4g1t_A          295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH  374 (472)
T ss_dssp             HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence                                                   112457899999999999999999997 22222 2222334


Q ss_pred             HHHHHH--HhcCCHHHHHHHhcC
Q psy10061        258 EKLLQA--FDEEDPEGARQALND  278 (325)
Q Consensus       258 ~~L~~a--~~~gd~~~~~~~~~~  278 (325)
                      ..++..  +..|+.+.+.....+
T Consensus       375 ~~~~~~~~~~~~~~~~Ai~~y~k  397 (472)
T 4g1t_A          375 LRYGNFQLYQMKCEDKAIHHFIE  397 (472)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            455553  357888888777655

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=2.3e-13  Score=115.55  Aligned_cols=160  Identities=8%  Similarity=0.059  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+...|.++...|++++|+.+|.+++++.... +.    .++.++|.+|..+|++++|+.++++++.+..      .-.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------NLA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------SHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-Cc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------chH
Confidence            677888999999999999999999999887421 21    4667799999999999999999999985421      235


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      .++..+|.+|...+ +++|+.+|++++.+.+.... ....+.++..+|.++..+|++++|+.+|++++.+.+.    ...
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~  152 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KWK  152 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----ccc
Confidence            67899999999887 99999999999998775432 2233568999999999999999999999999886221    002


Q ss_pred             HHHHHHHHHHHHhcCCH
Q psy10061        219 GRLAVALVLVQLARGDT  235 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~  235 (325)
                      ..++.++|.+|...|+.
T Consensus       153 ~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          153 TDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45778899999887765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=2.2e-13  Score=127.87  Aligned_cols=230  Identities=13%  Similarity=0.083  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---AYHAAKHLEQA  106 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~  106 (325)
                      +.+.++..+.+.....-.     -.+...-+..|+.+|.+|..+|++++|+++|.+|+++.+....   ....+.+|.++
T Consensus        26 ~~~~~l~~~e~~~~~~~~-----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl  100 (472)
T 4g1t_A           26 EGENSLDDFEDKVFYRTE-----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY  100 (472)
T ss_dssp             TTCCCHHHHHHHHHHHTT-----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            445555555554433221     1233444788999999999999999999999999999876532   23457789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcc--C-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNR--EAASTVLEKGAKSLEEL--K-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~--~~aa~~l~~lg~~~~~~--~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      |.+|..+|++++|+.++++++.+.....+.  ...+.++.+.|..+...  + +++|+.+|++|+++.+..      ..+
T Consensus       101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~  174 (472)
T 4g1t_A          101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEF  174 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHH
Confidence            999999999999999999999999887542  23456777888766543  4 999999999999886542      234


Q ss_pred             HHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----HHhcCCHHHHHHHHHhh-cccCCChH
Q psy10061        182 ISRAARMC---VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV----QLARGDTVAAEKAFKEW-GNCCEAPE  253 (325)
Q Consensus       182 ~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~----~~~~gd~~~A~~~~~~~-~~~~~~~e  253 (325)
                      +..+|.++   ...+++++|++.|++++.+.+..  .    .++..+|.+    +...|++++|..+++++ .....  .
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~--~----~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~  246 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN--Q----YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--V  246 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC--H----HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--C
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc--h----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--H
Confidence            44555443   34466677777777777653211  1    112222322    22334555555555554 11111  1


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        254 VQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       254 ~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..+...++..+ ..|+.+.+...+.+
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~  272 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKK  272 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            23344555554 35555555555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=4e-14  Score=134.34  Aligned_cols=186  Identities=12%  Similarity=0.053  Sum_probs=152.8

Q ss_pred             ccccH-HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         27 SDRKK-EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        27 ~~~~~-~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      ..++| ++|+++|++|.+...        +.   .+.+..+|.+|...|++++|..+|.+++.+..   +    ..++.+
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p--------~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~  175 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEP--------EL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---N----KVSLQN  175 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCT--------TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---C----HHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCC--------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C----HHHHHH
Confidence            34689 999999999987652        22   35788999999999999999999999987642   2    378999


Q ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHHHH
Q psy10061        106 AIMMCKEL---------NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL--------K-SDAALTLYSRAAD  167 (325)
Q Consensus       106 ~~~~y~~~---------g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~--------~-~~~A~~~y~~Al~  167 (325)
                      +|.+|..+         |++++|+.+|++++++....      ..++.++|.+|...        + +++|+.+|++++.
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~  249 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK  249 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            99999999         99999999999999874322      34788999999876        6 9999999999999


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +....   .....++.++|.+|..+|++++|+.+|++++.+.+..      ..++..++.++...|++++|.+.+.+.
T Consensus       250 ~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          250 VDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            85421   1235789999999999999999999999999874332      246678999999999999999877664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.54  E-value=8.2e-14  Score=138.37  Aligned_cols=159  Identities=13%  Similarity=0.091  Sum_probs=136.6

Q ss_pred             cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         24 TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        24 ~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      .+...|++++|+++|++|+++.        +++   ..+|..+|.+|..+|++++|+.+|.+++++....      +.++
T Consensus        18 ~~~~~G~~~eAi~~~~kAl~l~--------P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~   80 (723)
T 4gyw_A           18 IKREQGNIEEAVRLYRKALEVF--------PEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAY   80 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Confidence            3444579999999999998875        333   3568899999999999999999999999886432      5689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .++|.+|..+|++++|+.+|++|+++-..      -+.++.++|.+|...+ +++|+.+|++|+++....      ..++
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~a~  148 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------PDAY  148 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHH
Confidence            99999999999999999999999987321      2457999999999998 999999999999986543      4689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      .++|.+|..+|++++|++.+++++++...
T Consensus       149 ~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          149 CNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            99999999999999999999999998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=2.6e-13  Score=115.39  Aligned_cols=196  Identities=11%  Similarity=0.058  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      .-.+..|...|.++...|++++|..+|.+++.....      ...++..+|.+|...|++++|+.++++++.+...    
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----   89 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSS----   89 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----
Confidence            345677888899999999999999999998864322      2568899999999999999999999999877332    


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                        -..++..+|.++...+ +++|+.+|++++++....      ..++..+|.++...|++++|+.++++++.+.+..   
T Consensus        90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---  158 (243)
T 2q7f_A           90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---  158 (243)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred             --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---
Confidence              2457889999999887 999999999999876543      3578899999999999999999999998864321   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                         ..++..+|.++...|++++|...|+++ .....  ...+...++.++ ..|+.+.+...+++
T Consensus       159 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          159 ---TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             ---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence               236788999999999999999999998 33222  244677888887 69999999999887

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=1.7e-12  Score=113.25  Aligned_cols=184  Identities=16%  Similarity=0.123  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCC
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGN  135 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~  135 (325)
                      .+.+..+|.+|...|++++|..+|.++++    .++    ..++.++|.+|..    .+++++|+.+|++++++    ++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~   73 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY   73 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC
Confidence            45677899999999999999999999987    333    3578999999999    99999999999999865    33


Q ss_pred             HHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy10061        136 REAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEI  206 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al  206 (325)
                          ..++..+|.+|..    .+ +++|+.+|+++++.    ++    ..++.++|.+|..    .+++++|+.+|++++
T Consensus        74 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           74 ----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence                4578899999987    66 99999999999875    22    4688899999999    999999999999998


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-h----cCCHHHHHHHhc
Q psy10061        207 GYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-D----EEDPEGARQALN  277 (325)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~----~gd~~~~~~~~~  277 (325)
                      +.    ++    ..++.++|.+|..    .+++++|..+|+++-...   .......|+..+ .    .+|.+.+...++
T Consensus       142 ~~----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  210 (273)
T 1ouv_A          142 DL----ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS  210 (273)
T ss_dssp             HT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             hc----Cc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            74    22    2466789999998    999999999999982111   245667788876 5    789999998887


Q ss_pred             C
Q psy10061        278 D  278 (325)
Q Consensus       278 ~  278 (325)
                      +
T Consensus       211 ~  211 (273)
T 1ouv_A          211 K  211 (273)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.53  E-value=5.8e-13  Score=128.64  Aligned_cols=222  Identities=13%  Similarity=0.050  Sum_probs=168.0

Q ss_pred             hhhhhhHHHHHHhhchh----cc------ccccccHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSL----ST------MTSDRKKEEGMEYVKSAEKHLKTSL---------LKWKPDYDSAADDYSKA   66 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~----~~------~~~~~~~~eA~~l~~~A~~~~~~~~---------~~~~~~~~~A~~~y~~a   66 (325)
                      +..+|.+++.++.+.-.    .|      +...+++++|.+++.++.+......         ....+++++|.+.|.++
T Consensus       320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45677777777654221    12      2233577777777777664432210         11146777777666654


Q ss_pred             --------------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         67 --------------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        67 --------------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                                    +.+|...|++++|...|.++.......      ..++..++.+|...|++++|+.++++++++.. 
T Consensus       400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-  472 (597)
T 2xpi_A          400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-  472 (597)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence                          577889999999999999998664422      45788999999999999999999999987632 


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        133 QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       133 ~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                       .+    ..++..+|.+|...+ +++|+.+|++++++.+..+. +.....++..+|.+|...|++++|+.+|++++++.+
T Consensus       473 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          473 -YD----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             -CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             -CC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence             22    246889999999887 99999999999999876543 333357899999999999999999999999988632


Q ss_pred             HcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        211 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       211 ~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .      ...++..+|.+|...|++++|.+.|+++
T Consensus       548 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          548 N------DANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             C------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C------ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            1      1246788999999999999999999998

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=4.4e-13  Score=109.77  Aligned_cols=155  Identities=12%  Similarity=0.035  Sum_probs=130.1

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..|++++|++.|++|.+.-        |+.   .+.+..+|.+|...|++++|...+.++.......      ..++...
T Consensus        17 ~~g~~~~A~~~~~~al~~~--------p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~   79 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLKAD--------PNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYIL   79 (184)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh------HHHHHHH
Confidence            3479999999999998865        332   3568899999999999999999999987765432      4578889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.++...+++++|+..+.+++.+...  +    ..++..+|.+|...+ +++|+.+|++++++.+..      ..++.++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l  147 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTV--Y----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSI  147 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcc--c----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHH
Confidence            99999999999999999999876332  2    346888999999888 999999999999885432      4688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      |.+|..+|++++|+.+|++++++.+
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            9999999999999999999998743

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.53  E-value=1.2e-13  Score=127.33  Aligned_cols=201  Identities=10%  Similarity=0.036  Sum_probs=159.0

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS-FQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      .+++++|+++|.+|+++.        +++   ...|...|.++..+|+ +++|+.+|.+++.+..+.      ..++.++
T Consensus       110 ~g~~~~Al~~~~~al~l~--------P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~  172 (382)
T 2h6f_A          110 DERSERAFKLTRDAIELN--------AAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHR  172 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHC--------TTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhC--------ccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHH
Confidence            367899999999888765        222   3467788999999996 999999999999877543      4689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.++..+|++++|+.+|++++.+--  ++    ..++.++|.++...+ +++|+.+|++++++....      ..++.++
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP--~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~l  240 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDA--KN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQR  240 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCc--cC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            9999999999999999999997632  22    347899999999888 999999999999986543      4689999


Q ss_pred             HHHHHH-cCCHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhhcccCCChHHHHH
Q psy10061        186 ARMCVR-VKEFDKA-----ADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG--DTVAAEKAFKEWGNCCEAPEVQTL  257 (325)
Q Consensus       186 g~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g--d~~~A~~~~~~~~~~~~~~e~~~l  257 (325)
                      |.++.. .|.+++|     +.+|++++.+.+..      ..+++++|.++...|  ++.+|.+.+++. .. ..+...++
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al  312 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLI  312 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHH
Confidence            999999 5555888     58899998864332      236788999999988  799999999887 22 22234567


Q ss_pred             HHHHHHHh
Q psy10061        258 EKLLQAFD  265 (325)
Q Consensus       258 ~~L~~a~~  265 (325)
                      ..|+.++.
T Consensus       313 ~~La~~~~  320 (382)
T 2h6f_A          313 AFLVDIYE  320 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77788763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.51  E-value=4.7e-13  Score=108.42  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=138.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061         55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG  134 (325)
Q Consensus        55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g  134 (325)
                      +.+.....|...|.++...|++++|...|.+++.....      ...++..+|.+|...|++++|+.++++++.+...  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--   74 (186)
T 3as5_A            3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--   74 (186)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred             ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Confidence            33556788889999999999999999999888654332      2568899999999999999999999999877321  


Q ss_pred             CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                          -..++..+|.++...+ +++|+.++++++.+....      ..++..+|.++...|++++|+.++++++...+.. 
T Consensus        75 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-  143 (186)
T 3as5_A           75 ----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-  143 (186)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-
Confidence                2356888999998877 999999999999875432      3578899999999999999999999998864221 


Q ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                           ..++..+|.++...|++++|..+++++
T Consensus       144 -----~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          144 -----GKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 246788999999999999999999996

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.5e-13  Score=129.80  Aligned_cols=226  Identities=15%  Similarity=0.057  Sum_probs=178.4

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPD---YDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~---~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      .+++++|+++|.++.+.+...+.....+   .+.-...+...|.++...|++++|...|.+++.....       ..++.
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~  274 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-------VNSYI  274 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-------HHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-------HHHHH
Confidence            5789999999999998542211000122   2566788999999999999999999999999876432       67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      .+|.+|...|++++|+.++++++.+....      ..++..+|.++...+ +++|+.+|++++.+....      ..++.
T Consensus       275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~  342 (514)
T 2gw1_A          275 YMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYI  342 (514)
T ss_dssp             HHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHH
Confidence            99999999999999999999998763322      336889999999887 999999999999875542      24788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC-CChHHHHHH
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC-EAPEVQTLE  258 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~-~~~e~~~l~  258 (325)
                      .+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|...|+++    +... ......+..
T Consensus       343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  416 (514)
T 2gw1_A          343 QLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV  416 (514)
T ss_dssp             HHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            99999999999999999999998864332      246678999999999999999999997    2221 111134677


Q ss_pred             HHHHHH-h---cCCHHHHHHHhcC
Q psy10061        259 KLLQAF-D---EEDPEGARQALND  278 (325)
Q Consensus       259 ~L~~a~-~---~gd~~~~~~~~~~  278 (325)
                      .++.++ .   .|+.+.+...+++
T Consensus       417 ~l~~~~~~~~~~~~~~~A~~~~~~  440 (514)
T 2gw1_A          417 GKATLLTRNPTVENFIEATNLLEK  440 (514)
T ss_dssp             HHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcCCHHHHHHHHHH
Confidence            788876 6   7999999888876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.50  E-value=2.1e-12  Score=109.86  Aligned_cols=176  Identities=13%  Similarity=0.004  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+...|..+...|++++|+..|.+++..+...   .....++..+|.+|...|++++|+..|++++..+.....   +.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~   78 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID   78 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HH
Confidence            345566788889999999999999998765432   234568899999999999999999999999987665443   33


Q ss_pred             HHHHHHHHHHhc------------------cC-HHHHHHHHHHHHHHHhcCCChhhH-----------HHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEE------------------LK-SDAALTLYSRAADVAHGEDNYKQA-----------AEYISRAARMCV  190 (325)
Q Consensus       141 ~~l~~lg~~~~~------------------~~-~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~lg~~~~  190 (325)
                      .++..+|.++..                  .+ +++|+..|+++++.++.......+           ......+|.+|.
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~  158 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT  158 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667766653                  34 999999999999988765432211           122257889999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..|+|++|+..|+++++.++...   ....++..+|.+|..+|++++|.+.+++.
T Consensus       159 ~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          159 ERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            99999999999999998765432   23357889999999999999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.45  E-value=6.8e-12  Score=105.46  Aligned_cols=176  Identities=13%  Similarity=0.006  Sum_probs=119.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10061         66 AATCFKGAKSFQQCKEYLLKAANCYETN----------KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN  135 (325)
Q Consensus        66 a~~~y~~~g~~~~A~~~~~~a~~~~~~~----------~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~  135 (325)
                      -|..+...|++++|+.+|.+++.+....          ...........++|.+|...|++++|+.+|++++.+...  +
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~   87 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN--N   87 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--C
Confidence            3444445555555555555555443211          111222333445999999999999999999999987432  2


Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF--DKAADLIRQEIGYHQES  212 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~  212 (325)
                          ..++.++|.++...+ +++|+.+|++++++.+..      ..++.++|.+|...|+.  ..+...|.+++.     
T Consensus        88 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----  152 (208)
T 3urz_A           88 ----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS-----  152 (208)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----
Confidence                457899999999887 999999999999986543      46889999999877643  445555555432     


Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHH
Q psy10061        213 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKL  260 (325)
Q Consensus       213 ~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L  260 (325)
                        +......++..|.++...|++++|+.+|+++ ..+.+......+..+
T Consensus       153 --~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          153 --PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             --CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence              1122235677899999999999999999998 445444444444444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.45  E-value=3.9e-12  Score=120.74  Aligned_cols=143  Identities=10%  Similarity=0.078  Sum_probs=124.1

Q ss_pred             cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q psy10061         26 TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHL  103 (325)
Q Consensus        26 ~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~  103 (325)
                      ...|+|++|+.+++++++...+.+   ++++...+..++.+|.+|..+|+|++|..++.++++++++.  .++...+..+
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVF---ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            345799999999999999887754   58889999999999999999999999999999999999865  4678899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      +++|.+|..+|++++|+.+|++|+++.... | +....+..+..++..+..++ +.+|...|+++.+-+.+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~  467 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN  467 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998875 4 46677778888888888777 88888888888765533

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.44  E-value=2.4e-12  Score=118.75  Aligned_cols=194  Identities=11%  Similarity=0.009  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCC
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND-LTDVENLAKQAATLFLEQGN  135 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~~~~~g~  135 (325)
                      +.-.+.|...+.++...|++++|+.+|.+++.+....      ..++.++|.++..+|+ +++|+.++++++.+.-.   
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---  164 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---  164 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---
Confidence            4457788899999999999999999999999876543      4689999999999997 99999999999986332   


Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                         -..++.++|.++...+ +++|+.+|++++++....      ..++.++|.++..+|++++|+.+|+++|.+.+..  
T Consensus       165 ---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--  233 (382)
T 2h6f_A          165 ---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--  233 (382)
T ss_dssp             ---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--
T ss_pred             ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Confidence               2447999999999888 999999999999986543      4689999999999999999999999999874321  


Q ss_pred             HHHHHHHHHHHHHHHHh-cCCHHHH-----HHHHHhh-cccCCChHHHHHHHHHHHHh-cC--CHHHHHHHh
Q psy10061        215 LLAIGRLAVALVLVQLA-RGDTVAA-----EKAFKEW-GNCCEAPEVQTLEKLLQAFD-EE--DPEGARQAL  276 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~-~gd~~~A-----~~~~~~~-~~~~~~~e~~~l~~L~~a~~-~g--d~~~~~~~~  276 (325)
                          ..+++++|.++.. .|.+++|     +.+|+++ ..-...  ..+...++.++. .|  +.+.+.+.+
T Consensus       234 ----~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~  299 (382)
T 2h6f_A          234 ----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQL  299 (382)
T ss_dssp             ----HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHH
Confidence                2467889999999 5555777     4788886 222111  234455555553 44  344444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=6.4e-12  Score=106.51  Aligned_cols=157  Identities=10%  Similarity=-0.015  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      ..+.+.|.+|...|++++|+.+|++++++... .+.    ..+..+|.++...+ +++|+.+|++++.+.+.      ..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence            67899999999999999999999999987531 222    35667999999887 99999999999975433      35


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCCh--HHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP--EVQT  256 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~--e~~~  256 (325)
                      .++..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++...|++++|++.|+++-... ..  ...+
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  155 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDA  155 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHH
Confidence            68899999999999999999999999998655332 23345678999999999999999999999982222 23  3566


Q ss_pred             HHHHHHHH-hcCCH
Q psy10061        257 LEKLLQAF-DEEDP  269 (325)
Q Consensus       257 l~~L~~a~-~~gd~  269 (325)
                      ...|+.++ ..|+.
T Consensus       156 ~~~l~~~~~~~~~~  169 (228)
T 4i17_A          156 LYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776 45655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.44  E-value=6.5e-12  Score=97.19  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cH
Q psy10061        138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HL  215 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~  215 (325)
                      ..+.++.++|..+...+ +++|+.+|++|+++.+..      ..++.++|.+|..+|+|++|+..|++++++.+... .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            34455556666655554 666666666666553321      24566666666666666666666666666655442 33


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...+.++.++|.++..+|++++|+++|+++
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444556666666666666666666666665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.43  E-value=7.9e-12  Score=118.65  Aligned_cols=143  Identities=6%  Similarity=0.009  Sum_probs=127.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Q psy10061         67 ATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--GNREAASTV  142 (325)
Q Consensus        67 ~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--g~~~~aa~~  142 (325)
                      +..++.+|+|++|...|.+++++..+.  .++...+.++.++|.+|..+|+|++|+.+++++++++++.  .+....+..
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            345678999999999999999999875  3567899999999999999999999999999999999875  456788999


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ++++|.+|..++ +++|+.+|++|+++.+.. | ++....+++..++.++..++.|.+|...|+++.+-+
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 999999999999999874 3 567778889999999999999999999999987755

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.40  E-value=1.8e-12  Score=103.34  Aligned_cols=146  Identities=8%  Similarity=0.010  Sum_probs=108.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061         65 KAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLE  144 (325)
Q Consensus        65 ~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~  144 (325)
                      .+|.+++..|++++|+..+.+++..      .......+..+|.+|...|++++|+.++++++++...  +    ..++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~----~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--D----PKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHH
Confidence            4677888888899998888887543      3344567788999999999999999999999877322  2    45788


Q ss_pred             HHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHcccHHHHHHHH
Q psy10061        145 KGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL-IRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       145 ~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~  222 (325)
                      .+|.+|...+ +++|+.+|++++++.+..      ..++.++|.+|..+|++++|+.. +++++.+.+..      ..++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~  137 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVY  137 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHH
Confidence            9999999887 999999999999886543      36788999999999999887765 58888875432      1244


Q ss_pred             HHHHHHHHhcCC
Q psy10061        223 VALVLVQLARGD  234 (325)
Q Consensus       223 ~~lg~~~~~~gd  234 (325)
                      ...+.++..+|+
T Consensus       138 ~l~~~ll~~~G~  149 (150)
T 4ga2_A          138 KLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCc
Confidence            556677776664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=1e-11  Score=96.06  Aligned_cols=107  Identities=17%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-C
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED-N  174 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-~  174 (325)
                      ...+.++.++|++|.+.|+|++|+.+|++|+++...      -+.++.++|.+|...+ +++|+.+|++++++.+... .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            456677778888888888888888888888776321      1446778888888776 8888888888888776653 4


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      +...+.++.++|.++..+|++++|+++|++++.+.
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45556788888989888999999999988888753

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.38  E-value=3.6e-11  Score=101.37  Aligned_cols=173  Identities=15%  Similarity=0.052  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK  111 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~  111 (325)
                      .+|+++|++|.+.         ++    .+.+..+|.+|...+++++|..+|.++++.    ++    +.++.++|.+|.
T Consensus         3 ~eA~~~~~~aa~~---------g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA---------GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT---------TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC---------CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHH
Confidence            3577788877653         12    245778899999999999999999999753    44    468899999999


Q ss_pred             HcC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----cC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        112 ELN----DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----LK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       112 ~~g----~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      . +    ++++|+.+|++|++    .|+.    .++.++|.+|..    .+ +++|+.+|++|++.    ++......++
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~----~g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~  128 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVE----AGSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQ  128 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHH----TTCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHH
Confidence            8 7    89999999999964    4554    478899999986    33 99999999999753    3322335688


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHhh
Q psy10061        183 SRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR-G-----DTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-g-----d~~~A~~~~~~~  245 (325)
                      .++|.+|..    .+++++|+.+|++++++   .++.    .+++++|.+|... |     |+++|..+|+++
T Consensus       129 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          129 MLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            999999999    88999999999999864   1222    2567899999864 3     899999999997

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=3.1e-11  Score=102.54  Aligned_cols=166  Identities=4%  Similarity=-0.095  Sum_probs=129.3

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .++|++|+..|.++.+....        ...+.+.+..+|.+|...|++++|+..|.++++.+.....   +..++..+|
T Consensus        17 ~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g   85 (225)
T 2yhc_A           17 DGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRG   85 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHH
Confidence            46899999999999886533        3445677888999999999999999999999988765432   334566667


Q ss_pred             HHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHhccC-HHH
Q psy10061        108 MMCKE------------------LNDLTDVENLAKQAATLFLEQGNREAA-----------STVLEKGAKSLEELK-SDA  157 (325)
Q Consensus       108 ~~y~~------------------~g~~~eA~~~~~~A~~~~~~~g~~~~a-----------a~~l~~lg~~~~~~~-~~~  157 (325)
                      .+|..                  .|++++|+..|+++++.+........+           +.....+|.+|...+ +++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            66654                  678999999999998776554433221           122346788888777 999


Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        158 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       158 A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      |+..|+++++.++..   .....++..+|.+|.++|++++|++.+++++.
T Consensus       166 A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          166 VVNRVEGMLRDYPDT---QATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCC---CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            999999999988764   33457899999999999999999999987655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.37  E-value=2.1e-10  Score=108.78  Aligned_cols=186  Identities=14%  Similarity=0.095  Sum_probs=108.1

Q ss_pred             cccHHHHHHHHHHHHhhhcc------cc-c----CCCCCHHHHHHHHHHH------------HHHHHh----cCCHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKT------SL-L----KWKPDYDSAADDYSKA------------ATCFKG----AKSFQQCK   80 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~------~~-~----~~~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~   80 (325)
                      .+++++|+++|++|.+.-..      +. .    ...+|++.|...|.++            |.+|..    .+++++|.
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~  135 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV  135 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            35777788877777654211      00 0    0146667777666665            345555    66777777


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----
Q psy10061         81 EYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----  152 (325)
Q Consensus        81 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----  152 (325)
                      .+|.++++.    ++    ..++.++|.+|..    .+++++|+.+|+++++.    |+    ..++..+|.+|..    
T Consensus       136 ~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~  199 (490)
T 2xm6_A          136 KWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGV  199 (490)
T ss_dssp             HHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCC
Confidence            777776543    22    3466777777776    66777777777777643    43    2356666666664    


Q ss_pred             cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061        153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL  227 (325)
Q Consensus       153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  227 (325)
                      .+ +++|+.+|+++++.    ++    ..++..+|.+|..    .+++++|+.+|+++++.    ++    ..+++.+|.
T Consensus       200 ~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~  263 (490)
T 2xm6_A          200 ERNDAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GN----SIAQFRLGY  263 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TC----HHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence            22 67777777766542    22    2345556666665    55666666666665442    11    123445555


Q ss_pred             HHHh----cCCHHHHHHHHHhh
Q psy10061        228 VQLA----RGDTVAAEKAFKEW  245 (325)
Q Consensus       228 ~~~~----~gd~~~A~~~~~~~  245 (325)
                      +|..    .+|+++|..+|+++
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHH
Confidence            5555    55666666666654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.36  E-value=3.4e-11  Score=106.76  Aligned_cols=192  Identities=12%  Similarity=0.012  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...+..++..+...+++++|+..+.+.+.....-++    ..++..+|.+|...|++++|+.++++       -++    
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~----  129 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASIYFYDQNPDAALRTLHQ-------GDS----  129 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----
Confidence            456666677777777777777777665432100111    23566677777777777777777665       122    


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      ..++..+|.++...+ +++|+..|++++++.+..   . .......+..++...|++++|+.+|++++...+.      .
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~  199 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDA---T-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------T  199 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc---H-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------c
Confidence            235666677777666 777777777777663221   0 0001111112233446777777777777665221      1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHH-HHHHHhcC
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPE-GARQALND  278 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~-~~~~~~~~  278 (325)
                      ..+++++|.++..+|++++|...|+++ ......  ..++..++.++ ..|+.+ .+...+++
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~l~~l~~~~~~~g~~~eaa~~~~~~  260 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH--PETLINLVVLSQHLGKPPEVTNRYLSQ  260 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            235566777777777777777777776 222221  33455666554 355543 34444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.35  E-value=3.2e-10  Score=107.54  Aligned_cols=191  Identities=16%  Similarity=0.079  Sum_probs=148.1

Q ss_pred             CCCHHHHHHHHHHH------------HHHHHh----cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----
Q psy10061         53 KPDYDSAADDYSKA------------ATCFKG----AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----  112 (325)
Q Consensus        53 ~~~~~~A~~~y~~a------------~~~y~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----  112 (325)
                      .+|++.|...|.++            |.+|..    .+++++|..+|.++++.    ++    ..++.++|.+|..    
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~  127 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGV  127 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence            36777777777765            567887    89999999999998753    33    4578889999998    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE----L-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  187 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~----~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~  187 (325)
                      .+++++|+.+|+++++.    |+    ..++.++|.+|..    . ++++|+.+|+++++.    ++    ..++..+|.
T Consensus       128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~  191 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGY  191 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence            88999999999998753    55    3468899999986    3 399999999999874    33    367889999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHHHHHH
Q psy10061        188 MCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQTLEK  259 (325)
Q Consensus       188 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~~l~~  259 (325)
                      +|..    .+++++|+.+|+++++.    ++.    .+++.+|.+|..    .+|+++|...|+++-...   .......
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  260 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATS----GDE----LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR  260 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            9998    89999999999998763    332    456789999997    899999999999972111   1234556


Q ss_pred             HHHHH-h----cCCHHHHHHHhcC
Q psy10061        260 LLQAF-D----EEDPEGARQALND  278 (325)
Q Consensus       260 L~~a~-~----~gd~~~~~~~~~~  278 (325)
                      |+..+ .    .+|.+.+....++
T Consensus       261 lg~~y~~g~~~~~d~~~A~~~~~~  284 (490)
T 2xm6_A          261 LGYILEQGLAGAKEPLKALEWYRK  284 (490)
T ss_dssp             HHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHH
Confidence            66665 3    5777777777665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.34  E-value=5e-12  Score=125.18  Aligned_cols=179  Identities=9%  Similarity=-0.019  Sum_probs=137.9

Q ss_pred             ccccHHHHHHHHHHHHh-hhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEK-HLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~-~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      ..+++++|++.++++.. .+...    ....+.-.+.+...|.+|...|++++|+..|.+++++....      ..++.+
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~----~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~  472 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDAD----GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWY  472 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhccccc----ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHH
Confidence            34689999999999972 11110    01112334578888999999999999999999999876532      468999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  184 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  184 (325)
                      +|.+|..+|++++|+..|++|+.+.-..      ..++.++|.++...+ +++ +.+|++|+++....      ..++.+
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~  539 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFG  539 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHH
Confidence            9999999999999999999999874332      346889999999887 999 99999999875543      358899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        185 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       185 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                      +|.++..+|++++|+..|++++++.+.      ...++.++|.+++..++
T Consensus       540 lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          540 LARARSAEGDRVGAVRTLDEVPPTSRH------FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCTTSTT------HHHHHHHHHHHTC----
T ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCcc------cHHHHHHHHHHHHccCC
Confidence            999999999999999999999875321      22467789999877555

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=7.6e-11  Score=95.17  Aligned_cols=156  Identities=11%  Similarity=0.020  Sum_probs=128.5

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..+++++|++++.++.+....       +    ...+..+|.++...|++++|..++.+++.....      ...++..+
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~   82 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAF-------D----VDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVL   82 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSC-------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcc-------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHH
Confidence            346899999999887654321       1    467888999999999999999999999877432      14578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  185 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~l  185 (325)
                      |.+|...|++++|+.++++++.+...  +    ...+..+|.++...+ +++|+.++++++......      ..++..+
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l  150 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPI--N----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAI  150 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcH--h----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHH
Confidence            99999999999999999999877332  1    357888999999887 999999999999875432      4688899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        186 ARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       186 g~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      |.++...|++++|+.++++++.+.+.
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.32  E-value=4.4e-11  Score=103.41  Aligned_cols=186  Identities=11%  Similarity=-0.054  Sum_probs=134.3

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      ..|++++|+..|.+++...  ..+....+.++..+|.+|...|++++|+.++++++.+...      -..++..+|.++.
T Consensus        17 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~   88 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT   88 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence            3466788888888877652  1345667889999999999999999999999999987321      2347889999999


Q ss_pred             ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q psy10061        152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL  230 (325)
Q Consensus       152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~  230 (325)
                      ..+ +++|+.+|++++++.+..      ..++..+|.+|...|++++|+.+|++++.+.+....      ....+ .++.
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~-~~~~  155 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF------RSLWL-YLAE  155 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHH-HHHH
T ss_pred             HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH------HHHHH-HHHH
Confidence            887 999999999999986543      368889999999999999999999999986443211      11111 2224


Q ss_pred             hcCCHHHHHHHHHhh-cccCC-----------------------------------ChHHHHHHHHHHHH-hcCCHHHHH
Q psy10061        231 ARGDTVAAEKAFKEW-GNCCE-----------------------------------APEVQTLEKLLQAF-DEEDPEGAR  273 (325)
Q Consensus       231 ~~gd~~~A~~~~~~~-~~~~~-----------------------------------~~e~~~l~~L~~a~-~~gd~~~~~  273 (325)
                      ..|++++|...+++. .....                                   .....+...++.++ ..|+.+.+.
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  235 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT  235 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence            456666666666543 10000                                   01135566777776 588888888


Q ss_pred             HHhcC
Q psy10061        274 QALND  278 (325)
Q Consensus       274 ~~~~~  278 (325)
                      ..+++
T Consensus       236 ~~~~~  240 (275)
T 1xnf_A          236 ALFKL  240 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.30  E-value=4.1e-10  Score=115.96  Aligned_cols=245  Identities=13%  Similarity=0.133  Sum_probs=166.6

Q ss_pred             hhhhhHHHHHHhhchhc----cccccccHHHHHHHHHHHHhhhcc-c-ccCCCCCHHHHHHHHH---------HHHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLS----TMTSDRKKEEGMEYVKSAEKHLKT-S-LLKWKPDYDSAADDYS---------KAATCFK   71 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~----~~~~~~~~~eA~~l~~~A~~~~~~-~-~~~~~~~~~~A~~~y~---------~a~~~y~   71 (325)
                      ++++++++.+-++.+..    .....+.|+||..+|+++...... . +..-.++|++|.+.++         +.|.++.
T Consensus      1037 ~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql 1116 (1630)
T 1xi4_A         1037 RTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQL 1116 (1630)
T ss_pred             hhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            56777777776654442    233346899999999998644432 1 1101367788777664         4588888


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHcCCHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL-------------FLEQGNREA  138 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~-------------~~~~g~~~~  138 (325)
                      ..|++++|+++|.++       ++    ...|.+++.++.+.|++++|+++|..|...             |.+.++...
T Consensus      1117 ~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1117 QKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred             hCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence            999999999999775       34    346888999999999999999999887632             333344443


Q ss_pred             HHH--------HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        139 AST--------VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       139 aa~--------~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ...        .+.++|..+...+ |++|+.+|.+|              ..|.+++.+|.++|++++|++.++++....
T Consensus      1186 le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A         1186 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence            222        2556888888887 99999999885              367789999999999999999998885542


Q ss_pred             H---------HcccHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHhcCCHH
Q psy10061        210 Q---------ESEHLL----------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAFDEEDPE  270 (325)
Q Consensus       210 ~---------~~~~~~----------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~~~gd~~  270 (325)
                      .         +.+.+.          ..+..+..++..|...|.+++|+.+++..-... .....+-..|+.++..-.++
T Consensus      1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence            1         000000          012245577888999999999999998862221 11122444566666556666


Q ss_pred             HHHHHhc
Q psy10061        271 GARQALN  277 (325)
Q Consensus       271 ~~~~~~~  277 (325)
                      ...++++
T Consensus      1331 klmEhlk 1337 (1630)
T 1xi4_A         1331 KMREHLE 1337 (1630)
T ss_pred             HHHHHHH
Confidence            6666655

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=5e-11  Score=99.51  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .+..+.++|.++...|++++|+.+|+++++     .    -..++.++|.+|...+ +++|+.+|++++.+....     
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----   70 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-----   70 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----
Confidence            345677888899999999999999988841     1    2457889999998887 999999999998875432     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc----------cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                       ..++.++|.+|..+|++++|+.+|++++.+.+...          .......+++++|.++...|++++|..+|+++
T Consensus        71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             46788999999999999999999999988765432          11123357788999999999999999999997

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=2.9e-10  Score=101.23  Aligned_cols=213  Identities=9%  Similarity=-0.031  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH-------HhcCCH-------HHHHHHHHHHHH-HHHhcCCh
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF-------KGAKSF-------QQCKEYLLKAAN-CYETNKSA   96 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y-------~~~g~~-------~~A~~~~~~a~~-~~~~~~~~   96 (325)
                      ++|+..|++|.+....        ..   +.+...|.++       ...|++       ++|...|.+|+. +...    
T Consensus        33 ~~a~~~~~~al~~~p~--------~~---~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----   97 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH--------HP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----   97 (308)
T ss_dssp             HHHHHHHHHHHHHHTT--------CH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----
T ss_pred             HHHHHHHHHHHHHcCC--------CH---HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----
Confidence            6788888888876632        22   2333444443       356886       899999999987 4332    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                        -..++.+.|.++...|++++|...|++++.+..  .+..   .++.++|.++...+ +++|+..|++|+++....   
T Consensus        98 --~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---  167 (308)
T 2ond_A           98 --NMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---  167 (308)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--SCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred             --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--cCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence              245788999999999999999999999987522  1221   26888888887766 999999999998764322   


Q ss_pred             hhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc--cCCC
Q psy10061        176 KQAAEYISRAARMCV-RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN--CCEA  251 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~--~~~~  251 (325)
                         ..++...+.+.. ..|++++|+.+|++++.+.+..      ..++..++.++...|++++|...|+++ ..  +...
T Consensus       168 ---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          168 ---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             ---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence               234444554433 3799999999999999976432      356788999999999999999999998 43  3322


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        252 PEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       252 ~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ....+...++... ..|+.+.+....++
T Consensus       239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          239 KSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3345566667765 58999999888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.27  E-value=4.3e-10  Score=94.70  Aligned_cols=172  Identities=18%  Similarity=0.060  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----
Q psy10061         78 QCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL----  153 (325)
Q Consensus        78 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~----  153 (325)
                      +|...|.++++.    ++    +.++.++|.+|...+++++|+.+|++|++    .|+.    .++.++|.+|...    
T Consensus         4 eA~~~~~~aa~~----g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~g~~----~a~~~lg~~y~~~g~~~   67 (212)
T 3rjv_A            4 EPGSQYQQQAEA----GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAA----QGDG----DALALLAQLKIRNPQQA   67 (212)
T ss_dssp             CTTHHHHHHHHT----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCH----HHHHHHHHHTTSSTTSC
T ss_pred             hHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHcCCCCC
Confidence            466777777643    44    45889999999999999999999999975    3654    4788999999886    


Q ss_pred             CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        154 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       154 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      ++++|+.+|++|++.    ++    ..++.++|.+|..    .+++++|+.+|+++++.    ++......+++++|.+|
T Consensus        68 ~~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y  135 (212)
T 3rjv_A           68 DYPQARQLAEKAVEA----GS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIY  135 (212)
T ss_dssp             CHHHHHHHHHHHHHT----TC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHH
Confidence            599999999999652    32    3678899999998    89999999999998764    22112345778999999


Q ss_pred             Hh----cCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHh--cC-----CHHHHHHHhcChh
Q psy10061        230 LA----RGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAFD--EE-----DPEGARQALNDPF  280 (325)
Q Consensus       230 ~~----~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~~--~g-----d~~~~~~~~~~~~  280 (325)
                      ..    .+|+.+|..+|+++ .. .+..  .....|+..+.  .|     |.+.+....++.+
T Consensus       136 ~~g~g~~~d~~~A~~~~~~A~~~-~~~~--~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          136 ASGVHGPEDDVKASEYFKGSSSL-SRTG--YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHHHT-SCTT--HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHc-CCCH--HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            99    89999999999998 33 2222  25677888874  34     8899988887733

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=1.2e-09  Score=96.74  Aligned_cols=166  Identities=10%  Similarity=0.098  Sum_probs=118.7

Q ss_pred             CCCHHHHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Q psy10061         53 KPDYDSAADDYSK----------------AATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDL  116 (325)
Q Consensus        53 ~~~~~~A~~~y~~----------------a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~  116 (325)
                      .++++.|.+.+++                +|.++...|++++|+.++.+       -++    ..++..+|.+|..+|++
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~----~~~~~~l~~~~~~~g~~  146 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS----LECMAMTVQILLKLDRL  146 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----HHHHHHHHHHHHHTTCH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----HHHHHHHHHHHHHCCCH
Confidence            3566666666654                35677888999998888876       122    34788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        117 TDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       117 ~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                      ++|+..+++++.+.   .+.. ......-...++...+ +++|+.+|+++++.....      ..++.++|.++..+|++
T Consensus       147 ~~A~~~l~~~~~~~---p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          147 DLARKELKKMQDQD---EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHHHHHHHHHHHHC---TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhhC---cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Confidence            99999999988763   1211 1111111122333445 999999999999875432      46889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHhh
Q psy10061        196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA-AEKAFKEW  245 (325)
Q Consensus       196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~-A~~~~~~~  245 (325)
                      ++|+..|++++.+.+.      ...++.++|.++...|++.+ +..+++++
T Consensus       217 ~eA~~~l~~al~~~p~------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSG------HPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999886432      12467889999999999876 56777776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.25  E-value=5.9e-10  Score=93.48  Aligned_cols=180  Identities=13%  Similarity=0.081  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN----------REAASTVLEKGAKSLEELK-SDAALTLYSRAADV  168 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~----------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~  168 (325)
                      +..+...|..+...|++++|+.+|++++.+......          .........++|.+|...+ +++|+.+|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345667788889999999999999999886332111          1111222233999999887 99999999999998


Q ss_pred             HhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHhhc
Q psy10061        169 AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD--TVAAEKAFKEWG  246 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd--~~~A~~~~~~~~  246 (325)
                      .+..      ..++..+|.+|..+|++++|+.+|++++.+.+..      ..+++++|.+|+..|+  ...+...+.+..
T Consensus        84 ~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           84 APNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            6543      4688999999999999999999999999874321      2467889999987765  344555555542


Q ss_pred             ccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcChhhhcccHHHHHHhh
Q psy10061        247 NCCEAPEVQTLEKLLQAF-DEEDPEGARQALNDPFIKHMDVEYSRLAR  293 (325)
Q Consensus       247 ~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~~~~~~l~~~~~~~~~  293 (325)
                      .  ..........++.++ ..|+.+.+...+++.+-...+.+..+.+.
T Consensus       152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~  197 (208)
T 3urz_A          152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD  197 (208)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            1  222223344556654 57889999998887443344455444433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=8.3e-11  Score=113.69  Aligned_cols=155  Identities=12%  Similarity=0.069  Sum_probs=115.7

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      ++++++|+++|+++.+...        +   -...+..+|.+|...|++++|..+|.+++++....      ..++.++|
T Consensus         2 ~g~~~~A~~~~~~al~~~p--------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP--------Q---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLG   64 (568)
T ss_dssp             ---------------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC--------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            4678999999999876542        2   13578899999999999999999999998765432      56899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|..+|++++|+.++++++++...  +    ..++.++|.+|...+ +++|+.+|++++++....      ..++.++|
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~  132 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPE--H----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLL  132 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            9999999999999999999987332  2    457899999999887 999999999999886532      36788999


Q ss_pred             HHHHHc---CCHHHHHHHHHHHHHHHHH
Q psy10061        187 RMCVRV---KEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       187 ~~~~~~---g~~~~A~~~~~~al~~~~~  211 (325)
                      .++..+   |++++|+..|+++++..+.
T Consensus       133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            999999   9999999999999987554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.24  E-value=1.7e-10  Score=96.23  Aligned_cols=134  Identities=13%  Similarity=0.056  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061         63 YSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTV  142 (325)
Q Consensus        63 y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~  142 (325)
                      +...|.++...|++++|+.+|.+++      ..   ...++.++|.+|...|++++|+.+|++++.+...      -..+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~   73 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVA   73 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHH
Confidence            4456888889999999999998873      11   2468999999999999999999999999987421      2457


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC----------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGED----------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      +.++|.+|...+ +++|+.+|++++++.+...          .......++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            899999999887 9999999999999877654          33445678999999999999999999999999887543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.22  E-value=1.2e-10  Score=92.62  Aligned_cols=141  Identities=15%  Similarity=0.076  Sum_probs=110.8

Q ss_pred             ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      +...+++++|+..++++....           ++-...+..+|.+|...|+|++|+.+|.+++++....      ..++.
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~-----------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~   69 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSP-----------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR   69 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSH-----------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccC-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            444578999999998875533           3334455678999999999999999999999886542      56899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHH-HHHHHHHHhcCCChhhHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTL-YSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~-y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      ++|.+|...|++++|+.+|++++++...  +    ..++.++|.+|...+ +++|+.. +++|+++.+..      ..++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~  137 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPT--Q----KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVY  137 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHH
Confidence            9999999999999999999999987322  2    347899999998887 7777765 58999987653      3567


Q ss_pred             HHHHHHHHHcCC
Q psy10061        183 SRAARMCVRVKE  194 (325)
Q Consensus       183 ~~lg~~~~~~g~  194 (325)
                      ...+.++...|+
T Consensus       138 ~l~~~ll~~~G~  149 (150)
T 4ga2_A          138 KLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCc
Confidence            777888877764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.22  E-value=9.8e-11  Score=115.90  Aligned_cols=187  Identities=13%  Similarity=-0.002  Sum_probs=140.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHH-Hh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCY-ET-NKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK  148 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~-~~-~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~  148 (325)
                      ...|++++|++.|.++++.. .. .......+.++..+|.+|..+|++++|+..|++++++..  ++    ..++.++|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~----~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WR----WRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CC----HHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--ch----HHHHHHHHH
Confidence            57899999999999987211 10 011122356889999999999999999999999997632  22    457899999


Q ss_pred             HHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q psy10061        149 SLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL  227 (325)
Q Consensus       149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  227 (325)
                      ++...+ +++|+.+|++|+++....      ..++.++|.+|..+|++++ +.+|++++++.+..      ..+++++|.
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~  542 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLAR  542 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHH
Confidence            999887 999999999999987654      3578899999999999999 99999999874321      236789999


Q ss_pred             HHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCC-----HHHHHHHhc
Q psy10061        228 VQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEED-----PEGARQALN  277 (325)
Q Consensus       228 ~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd-----~~~~~~~~~  277 (325)
                      ++..+|++++|+..|+++-.... ....+...++.++ ..++     .+.+.++.+
T Consensus       543 ~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~  597 (681)
T 2pzi_A          543 ARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR  597 (681)
T ss_dssp             HHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence            99999999999999999833322 2244566677776 3333     455555554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.22  E-value=1.5e-10  Score=111.83  Aligned_cols=149  Identities=10%  Similarity=-0.062  Sum_probs=110.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE  152 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~  152 (325)
                      .|++++|..+|.+++++....      +.++.++|.+|...|++++|+.+|++++++...      -..++.++|.+|..
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~   69 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWT   69 (568)
T ss_dssp             -------------------CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            467888888888887765432      468999999999999999999999999876322      24578999999998


Q ss_pred             cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      .+ +++|+.+|++++++....      ..++.++|.+|..+|++++|+.+|++++++.+..      ..++.+++.++..
T Consensus        70 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~  137 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRR  137 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            87 999999999999985542      4688999999999999999999999999874321      2467889999999


Q ss_pred             c---CCHHHHHHHHHhh
Q psy10061        232 R---GDTVAAEKAFKEW  245 (325)
Q Consensus       232 ~---gd~~~A~~~~~~~  245 (325)
                      +   |++++|.+.|+++
T Consensus       138 ~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A          138 LCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             TTCCTTHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHH
Confidence            9   9999999999996

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.21  E-value=2.9e-10  Score=87.71  Aligned_cols=102  Identities=15%  Similarity=0.035  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ...+..+.+.|..|.+.|++++|+.+|++|+++...      -..++.++|.+|...+ +++|+..|++++++....   
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---   80 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence            345778888899999999999999999998876321      1457888898888887 999999999998874432   


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                         ..++.++|.+|..+|++++|+..|++++++.+
T Consensus        81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence               35788899999999999999999999988743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.21  E-value=7.2e-10  Score=88.18  Aligned_cols=132  Identities=11%  Similarity=-0.018  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      ..+..+..+|.++...|++++|+.++++++.+....      ..++..+|.++...+ +++|+.+|++++.+....    
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----   80 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence            345667777777777777777777777777653221      346677777777666 777777777777764322    


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                        ..++..+|.++..+|++++|+.+|++++.+.+..    .........+..+...|++++|...+.+.
T Consensus        81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence              3467778888888888888888888777654321    11223344555577777777777777764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.20  E-value=5.6e-10  Score=89.23  Aligned_cols=114  Identities=11%  Similarity=-0.013  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----C-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG-----N-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g-----~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      .+..+.+.|+.+...|+|++|+.+|++|+++-...-     + ...-+.++.++|.++..++ +++|+.+|.+|+++|..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            456677788888888888888888888888766521     1 1122347888888888777 88888888888887433


Q ss_pred             CCC-hhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        172 EDN-YKQAAEYI----SRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       172 ~~~-~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      .+. ...-..+|    .+.|.++..+|++++|+..|++++++.++-
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            221 12234566    889999999999999999999998887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.19  E-value=1.4e-10  Score=94.41  Aligned_cols=161  Identities=10%  Similarity=0.025  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061         62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST  141 (325)
Q Consensus        62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~  141 (325)
                      .+...|..+...|++++|...|.+++......      ..++..+|.+|...|++++|+.++++++....   +..    
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~----   74 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNS----   74 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChH----
Confidence            35567888889999999999999998877643      46899999999999999999999999875532   221    


Q ss_pred             HHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        142 VLEKGAKSLE--ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       142 ~l~~lg~~~~--~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ....++.+..  ..+...|+.++++++++.+..      ..++..+|.++...|++++|+..|++++.+.+...    ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~  144 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ----DG  144 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT----TT
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC----hH
Confidence            1222232221  122345799999999876543      36888999999999999999999999987643221    12


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++..+|.++...|+.++|...|+++
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            36678999999999999999999885

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.19  E-value=1.4e-09  Score=86.48  Aligned_cols=141  Identities=16%  Similarity=0.075  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      ...+..+...|.++...|++++|..+|.+++.+....      ..++.++|.+|...|++++|+.++++++.+...    
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----   79 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence            4567788889999999999999999999998875432      568899999999999999999999999987432    


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                        -..++..+|.++...+ +++|+.+|++++.+.....    .......++..+...|++++|+.++.+...++...+
T Consensus        80 --~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (166)
T 1a17_A           80 --YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD  151 (166)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence              2457889999999887 9999999999998865431    122335566668889999999999999888776543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.19  E-value=4.5e-10  Score=86.62  Aligned_cols=114  Identities=11%  Similarity=0.019  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      ++-++.+...|+.|...|+|++|+.+|.+++++....      ..++.++|.+|..+|++++|+..+++++++-..  + 
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~-   80 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--F-   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--h-
Confidence            4556778889999999999999999999999875432      568999999999999999999999999987221  1 


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM  188 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~  188 (325)
                         ..++.++|.++...+ +++|+.+|++++++.+..      ..++..++.+
T Consensus        81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~  124 (126)
T 4gco_A           81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC  124 (126)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence               347999999999988 999999999999986543      2455566554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.18  E-value=7.2e-10  Score=98.65  Aligned_cols=185  Identities=11%  Similarity=0.018  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK  111 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~  111 (325)
                      ++|...|++|.+.+.       ++.   ..++...+.++...|++++|...|.+++.+...  +..   .++.+.+.++.
T Consensus        81 ~~A~~~~~rAl~~~~-------p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~~~~~~~  145 (308)
T 2ond_A           81 DEAANIYERAISTLL-------KKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPT---LVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHTTTT-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-------ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Ccc---HHHHHHHHHHH
Confidence            889999999888432       222   356778899999999999999999999875432  211   27889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q psy10061        112 ELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE-ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC  189 (325)
Q Consensus       112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~-~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~  189 (325)
                      +.|++++|+..|++|+.+...  +    ...+...+.+.. ..+ +++|+.+|++++++....      ..++..+|.++
T Consensus       146 ~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~  213 (308)
T 2ond_A          146 RAEGIKSGRMIFKKAREDART--R----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYL  213 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTC--C----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Confidence            999999999999999865321  1    233444444432 244 999999999999987643      46788999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        190 VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       190 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+|++++|+.+|++++.... + .+.....++...+..+...|+++.|...++++
T Consensus       214 ~~~g~~~~A~~~~~~al~~~~-l-~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          214 SHLNEDNNTRVLFERVLTSGS-L-PPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSS-S-CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhccC-C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999987410 0 11112346777888899999999999999997

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=1.5e-09  Score=82.48  Aligned_cols=130  Identities=13%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+..+|.++...|++++|...|.+++.....  +    ..++..++.++...|++++|+.++++++.....  +    .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----A   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----H
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--c----h
Confidence            34566777777888888888888877665321  1    346677788888888888888888887765221  1    2


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ..+..+|.++...+ +++|+.++++++......      ..++..+|.++...|++++|+.++++++.+
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            35667777777666 888888888777664322      246667778888888888888887777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.17  E-value=7.4e-10  Score=103.47  Aligned_cols=116  Identities=11%  Similarity=0.071  Sum_probs=101.4

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQA  106 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~  106 (325)
                      ++|++|+.+++++++...+.+   +++....+..++.++.+|..+|+|++|..++++++.++++.  .++...+..++++
T Consensus       312 g~~~eA~~~~~~~L~i~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVF---EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCcc---ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            589999999999999887754   68889999999999999999999999999999999999975  4678899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHH
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGA  147 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg  147 (325)
                      |.+|..+|++++|+.+|++|++++... | +....+....+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999875 4 3445555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.4e-09  Score=83.11  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .+..+.+.|.++...|++++|+.+|++++.+...  +    ..++.++|.++...+ +++|+.+|++++.+....     
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   71 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--D----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-----   71 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence            3567788888888888888888888888876322  1    357888888888777 888888888888875432     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                       ..++..+|.++..+|++++|+..|++++.+.+..
T Consensus        72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  105 (126)
T 3upv_A           72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEV  105 (126)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence             3577888888888888888888888888876543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=9.9e-10  Score=83.46  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      .++..+|.+|...|++++|+.++++++....  .+    ...+..+|.++...+ +++|+.++++++......      .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------A   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------h
Confidence            4678899999999999999999999987532  12    346788899988776 999999999999875432      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++..+|.++...|++++|+.++++++...+..      ...+..+|.++...|++++|...|+++
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            577889999999999999999999998763321      245678999999999999999999986

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.16  E-value=1.1e-09  Score=99.04  Aligned_cols=142  Identities=10%  Similarity=-0.000  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAA  127 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~  127 (325)
                      ...+..+...|.++...|++++|+.+|.+++.+.....+         ....+.++.++|.+|..+|++++|+.+|++++
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345678888999999999999999999999998875431         12236789999999999999999999999998


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q psy10061        128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA-ADLIRQE  205 (325)
Q Consensus       128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~a  205 (325)
                      .+...      -..++.++|.+|...+ +++|+.+|++++++....      ..++..++.++..+|++++| ...|+++
T Consensus       224 ~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          224 ELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87322      2457889999999887 999999999999886543      35788899999999999988 5567777


Q ss_pred             HHHHH
Q psy10061        206 IGYHQ  210 (325)
Q Consensus       206 l~~~~  210 (325)
                      +....
T Consensus       292 ~~~~~  296 (336)
T 1p5q_A          292 FERLA  296 (336)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            66543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.15  E-value=6.8e-10  Score=88.61  Aligned_cols=103  Identities=12%  Similarity=0.012  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~  174 (325)
                      ...-..++.++|.++..+|++++|+.+|++++.+-..  +    ..++.++|.+|...+ +++|+.+|++++.+.+..  
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~--  103 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--N----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--  103 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence            3445667888889999999999999999988876321  2    346888888888887 999999999998887653  


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                          ..++.++|.+|..+|++++|+..|++++.+.+
T Consensus       104 ----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          104 ----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             ----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                25778899999999999999999999888753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.15  E-value=4.7e-10  Score=99.05  Aligned_cols=163  Identities=11%  Similarity=0.020  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+...|..+...|++++|...|.+++......      ..++..+|.+|...|++++|+.++++++....   +.   .
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~---~  185 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DT---R  185 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SH---H
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---ch---H
Confidence            345567788889999999999999988776542      45788899999999999999999998865422   22   1


Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      .....++..+... +.++|+..|++++......      ..++.++|.++...|++++|+..|++++...+...    ..
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~  255 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DG  255 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GG
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cc
Confidence            2333444444444 3778899999998876543      35788999999999999999999999988643321    22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++.+++.++...|+.+.|...|++.
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            46678899999999999999888875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.15  E-value=1.2e-09  Score=87.12  Aligned_cols=97  Identities=14%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ..-...+..+|.++...+ +++|+.+|++++.+.+..      ..++.++|.+|..+|+|++|+..|++++.+.+..   
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---  103 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---  103 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---
Confidence            445667889999998887 999999999999986543      4688999999999999999999999999975432   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                         ..+++++|.+|..+|++++|+.+|+++
T Consensus       104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          104 ---YTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               246789999999999999999999998

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.15  E-value=1.3e-09  Score=87.00  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN------KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      +..+...|+.+...|+|++|+.+|.+++++....      .....-+.+|.+.|.++..+|++++|+.+|++|+++|...
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            4455667888889999999999999999998762      1112345599999999999999999999999999986655


Q ss_pred             CCH-HHHHHHH----HHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061        134 GNR-EAASTVL----EKGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus       134 g~~-~~aa~~l----~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      +.. ..-+.+|    .+.|.++...+ +++|+.+|++|+++.....
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            431 1234456    99999999998 9999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.14  E-value=5.8e-10  Score=100.85  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=122.1

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHH
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---------REAASTV  142 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---------~~~aa~~  142 (325)
                      .++++++|...|.++....      ...+.++.++|.+|...|++++|+.+|++|+.+.....+         ....+.+
T Consensus       125 ~L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence            3455666666666655432      345778999999999999999999999999998765531         1222578


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      +.++|.+|...+ +++|+.+|++++++....      ..++.++|.+|..+|++++|+..|++++.+.+..      ..+
T Consensus       199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a  266 (336)
T 1p5q_A          199 HLNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAA  266 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHH
Confidence            999999999887 999999999999986542      4688999999999999999999999999874321      236


Q ss_pred             HHHHHHHHHhcCCHHHHH-HHHHhh
Q psy10061        222 AVALVLVQLARGDTVAAE-KAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~-~~~~~~  245 (325)
                      +..++.++...|++.+|. ..|++.
T Consensus       267 ~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          267 KTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999884 445543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.13  E-value=1.8e-09  Score=101.62  Aligned_cols=171  Identities=13%  Similarity=0.017  Sum_probs=129.0

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGA----KSFQQCKEYLLKAANCYETNKSAYHAAKHLEQ  105 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~----g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~  105 (325)
                      ++++|+++|++|...-..           -+..+..+|.+|...    +++++|..+|.+++     .++    ..++.+
T Consensus       194 ~~~~A~~~~~~aa~~g~~-----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~  253 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTV-----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS-----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHH
T ss_pred             cHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHH
Confidence            667777777766543211           112235667777655    79999999999986     223    457889


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhcCCChhh
Q psy10061        106 AIMM-C--KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-----KSDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus       106 ~~~~-y--~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-----~~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      +|.+ |  ...+++++|+.+|++|+    +.|+.    .++.++|.+|...     ++++|+.+|++|+     .++   
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa----~~g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~---  317 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGR----AADQP----RAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GRE---  317 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHH----HTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTC---
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHH----HCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCC---
Confidence            9998 4  56789999999999987    34553    4788999999865     5999999999998     233   


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061        178 AAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW  245 (325)
Q Consensus       178 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~  245 (325)
                       ..++.++|.+|..    ..++++|+.+|+++.+.    ++.    .+.+++|.+|..    ..|+.+|...|+++
T Consensus       318 -~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          318 -VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----GQN----SADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             -HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----TCT----THHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----ChH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence             3678899999887    44999999999998762    332    356789999985    56999999999998

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.12  E-value=1.4e-09  Score=87.14  Aligned_cols=107  Identities=11%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN------------REAASTVLEKGAKSLEELK-SDAALTLYS  163 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~------------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~  163 (325)
                      ...+..+.+.|..+...|++++|+.+|++++.+......            ...-+.++.++|.+|...+ +++|+.+++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            345778888899999999999999999999888654321            2233456666777766665 777777777


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        164 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       164 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      +++.+....      ..++..+|.+|..+|+|++|+..|++++.+.
T Consensus        88 ~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           88 EVLKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            777663221      3466677777777777777777777776653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.09  E-value=2.4e-09  Score=100.02  Aligned_cols=121  Identities=7%  Similarity=-0.081  Sum_probs=106.4

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQ  105 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~  105 (325)
                      .++|++|++++++++....+.+   +++...-+..++.++.+|..+|+|++|..++.+++.++++.  .++...+..+.+
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~l---g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERL---PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCC---CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcC---CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            3589999999999998877643   58889999999999999999999999999999999999875  467889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHh
Q psy10061        106 AIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKGAKSLE  151 (325)
Q Consensus       106 ~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~lg~~~~  151 (325)
                      +|.+|..+|++++|+.+|++|++++... | +....+..+.+++.+..
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876 4 46677777788877654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.07  E-value=5e-09  Score=98.56  Aligned_cols=26  Identities=0%  Similarity=0.003  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHH
Q psy10061        102 HLEQAIMMCKELN---DLTDVENLAKQAA  127 (325)
Q Consensus       102 ~~~~~~~~y~~~g---~~~eA~~~~~~A~  127 (325)
                      ++.++|.+|...|   ++++|+.+|++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            5566666666666   6666666666664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.07  E-value=1.8e-08  Score=103.92  Aligned_cols=196  Identities=14%  Similarity=0.084  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      +.|++|..+|++++......+.+-++...+.+|.+...+...    ..++.++|.++...|++.+|+++|.+|       
T Consensus      1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred             CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence            677777777777642222222233333344445555555544    457889999999999999999999876       


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc-------------CCChhhH--------HHHHHHHHHHHHH
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG-------------EDNYKQA--------AEYISRAARMCVR  191 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~-------------~~~~~~~--------~~~~~~lg~~~~~  191 (325)
                      +++.    .+.+++.++...+ +++|+++|+.|....+.             .+.....        ...+.++|..+..
T Consensus      1132 dD~s----ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A         1132 DDPS----SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred             CChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            4433    5667788888777 88888888776643311             1111100        1245679999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh---cc-------cCCChH--------
Q psy10061        192 VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW---GN-------CCEAPE--------  253 (325)
Q Consensus       192 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~---~~-------~~~~~e--------  253 (325)
                      .|+|++|+.+|.++              ..|..++.++...|+++.|.+.++++   ..       +....|        
T Consensus      1208 eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A         1208 EKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred             cCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999875              25678999999999999999999986   11       001111        


Q ss_pred             ------HHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        254 ------VQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       254 ------~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                            ...+..++..+ ..|..+.+...+.+
T Consensus      1274 l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1274 LHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  12344556666 47888887777755

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.06  E-value=4.5e-09  Score=98.13  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=83.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-G-NREAASTVLEKG  146 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-g-~~~~aa~~l~~l  146 (325)
                      ...|+|++|...|++++++..+.  .++...+.++.++|.+|..+|+|++|+.+++++++++++. | +....+..++++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            34577888888888888887764  3456778888888888888888888888888888887764 3 466777778888


Q ss_pred             HHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHH
Q psy10061        147 AKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRA  185 (325)
Q Consensus       147 g~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~l  185 (325)
                      |.+|..++ +++|+.+|++|+++.... | ++....++..+|
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            88887776 888888888888777653 3 334444444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.05  E-value=3.7e-09  Score=98.75  Aligned_cols=135  Identities=12%  Similarity=0.036  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN--KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-  133 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-  133 (325)
                      ..+.+....+. -+...|+|++|...+++++++..+.  .++...+.++.+++.+|..+|+|++|+.++++++.++++. 
T Consensus       285 ~~~~~ll~~ie-~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          285 KEVQESLKKIE-ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence            33444444433 3456789999999999998887654  3566788999999999999999999999999999998875 


Q ss_pred             -CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-C-ChhhHHHHHHHHHHHHHHc
Q psy10061        134 -GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRV  192 (325)
Q Consensus       134 -g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~  192 (325)
                       .+....+..++++|.+|...+ +++|+.+|++|++++... | ++....+++.+++.+...+
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence             456777888888888888887 888888888888888764 3 4566667777777776544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.04  E-value=6.1e-09  Score=83.45  Aligned_cols=105  Identities=12%  Similarity=0.050  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~  174 (325)
                      ....+..+..+|.+|...|++++|+.+|++++.+....      ..++.++|.+|...+ +++|+.+|++++.+....  
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Confidence            34456778888888888888888888888887764321      446778888888776 888888888888775432  


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                          ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus        79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence                3577788888888888888888888888876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.04  E-value=2e-09  Score=89.14  Aligned_cols=130  Identities=8%  Similarity=0.046  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA----------ASTVLEKGAKSLEELK-SDAALTLYSRAA  166 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~----------aa~~l~~lg~~~~~~~-~~~A~~~y~~Al  166 (325)
                      ..+..+.++|.++...|++++|+.+|++++.+.....++..          ...++.++|.++...+ +++|+.++++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45667777888888888888888888888776544332111          1467888888888776 888888888888


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy10061        167 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  239 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~  239 (325)
                      .+....      ..++..+|.+|..+|++++|+.+|++++.+.+..      ..++..++.++...++..++.
T Consensus       116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred             HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence            874322      3577888999999999999999998888764321      234566777777777666655

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=7.2e-09  Score=79.03  Aligned_cols=120  Identities=10%  Similarity=-0.012  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      -++.+...|..+...|++++|+.+|.+++.+....      ..++.++|.+|..+|++++|+.++++++.+...      
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence            35667788999999999999999999999876432      468999999999999999999999999987322      


Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  190 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~  190 (325)
                      -..++..+|.++...+ +++|+.+|++++++.+...+......++..++.+..
T Consensus        71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            1457899999999888 999999999999998543332333445555655543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.02  E-value=8.1e-09  Score=78.09  Aligned_cols=122  Identities=11%  Similarity=0.090  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~  174 (325)
                      ....+..+..+|.++...|++++|+.++++++.....  +    ..++..+|.++...+ +++|+.++++++.+....  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--   79 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--
Confidence            3455677888888888889999999999888876322  1    446788888888776 999999999998874332  


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT  235 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~  235 (325)
                          ..++..+|.++...|++++|+.+|++++.+.+..      ..++..++.++...|++
T Consensus        80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 ----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence                3577889999999999999999999988764321      23556788888887764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.02  E-value=1.2e-08  Score=77.31  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYK  176 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~  176 (325)
                      .+..+..+|.++...|++++|+.++++++.....  +    ..++..+|.++...+ +++|+.+|++++.+.... .+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--N----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            3566777888888888888888888888765321  1    346777788777666 888888888888877654 3334


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ....++..+|.+|...|++++|+.+|++++.+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            44567888888888888888888888888775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.02  E-value=5.7e-09  Score=79.50  Aligned_cols=119  Identities=13%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      ....++..+|.++...|++++|+.++++++.+...  +    ..++..+|.++...+ +++|+.++++++.+....    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----   83 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--D----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----   83 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--C----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----
Confidence            34567888888888888888888888888765321  1    457888888888776 999999999998875432    


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  234 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd  234 (325)
                        ..++..+|.++...|++++|+.+|++++.+.+..      ..++..++.++..+|+
T Consensus        84 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           84 --IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred             --hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence              3578889999999999999999999988764321      1355667888777664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.00  E-value=6.4e-09  Score=97.99  Aligned_cols=152  Identities=10%  Similarity=0.054  Sum_probs=113.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHH
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---------REAASTVL  143 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---------~~~aa~~l  143 (325)
                      ++++++|...|..+....      ...+..+.+.|.+|...|++++|+.+|++|+.+......         ....+.++
T Consensus       247 l~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EEEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            344555555555444332      345678888999999999999999999999988655421         12235788


Q ss_pred             HHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q psy10061        144 EKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  222 (325)
Q Consensus       144 ~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  222 (325)
                      .++|.+|...+ +++|+.+|++++++....      ..++.++|.+|..+|+|++|+..|++++.+.+..      ..++
T Consensus       321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~  388 (457)
T 1kt0_A          321 LNLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAAR  388 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHH
Confidence            89999999887 999999999999886542      4688899999999999999999999998864322      2356


Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q psy10061        223 VALVLVQLARGDTVAAEKAF  242 (325)
Q Consensus       223 ~~lg~~~~~~gd~~~A~~~~  242 (325)
                      ..++.++...|++.+|....
T Consensus       389 ~~l~~~~~~~~~~~~a~~~~  408 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRRI  408 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            78899999999888877543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.00  E-value=6.7e-09  Score=83.06  Aligned_cols=108  Identities=10%  Similarity=-0.016  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS------------AYHAAKHLEQAIMMCKELNDLTDVENLAKQ  125 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~  125 (325)
                      ..+..+...|+.+...|+|++|+.+|.+++.+......            ....+.++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45677888899999999999999999999988654311            334567999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061        126 AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus       126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      ++.+-.      .-+.++..+|.+|...+ +++|+.+|++++.+.+.
T Consensus        89 al~~~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           89 VLKREE------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhcCC------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            998722      12457999999999988 99999999999998654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.99  E-value=8.3e-09  Score=82.66  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      +....+..+..+|.++...+ +++|+.+|++++++....      ..++.++|.+|..+|+|++|+.+|++++.+.+.. 
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-   78 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-   78 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence            34456778999999999887 999999999999986543      4688999999999999999999999999874321 


Q ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                           ..+++++|.+|..+|++++|..+|+++
T Consensus        79 -----~~~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           79 -----SKAWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                 357789999999999999999999997

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=2.6e-08  Score=95.22  Aligned_cols=215  Identities=9%  Similarity=-0.007  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061         61 DDYSKAATCFKG-------AKSFQ-------QCKEYLLKAAN-CYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQ  125 (325)
Q Consensus        61 ~~y~~a~~~y~~-------~g~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~  125 (325)
                      +++...+.++..       .|+++       +|...|.+++. +..      .-...+...+.++...|++++|...|++
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            344455555554       78887       88888888875 322      1256788899999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHHcCCHHHHHHHHH
Q psy10061        126 AATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKEFDKAADLIR  203 (325)
Q Consensus       126 A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~  203 (325)
                      ++.+..  .++   ..++...+.++...+ +++|...|++|++.....      ...+...+.+ +...|++++|..+|+
T Consensus       347 al~~~p--~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~~~~~A~~~~e  415 (530)
T 2ooe_A          347 LLAIED--IDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFE  415 (530)
T ss_dssp             HHHSSS--SCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HhCccc--cCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            987511  121   247888888887766 999999999998753321      1233344433 446899999999999


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC--hHHHHHHHHHHHH-hcCCHHHHHHHhcC-
Q psy10061        204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA--PEVQTLEKLLQAF-DEEDPEGARQALND-  278 (325)
Q Consensus       204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~--~e~~~l~~L~~a~-~~gd~~~~~~~~~~-  278 (325)
                      +++...+..      ..++..++.++...|++++|...|+++ ......  ....+....++.. ..||.+.+..+.++ 
T Consensus       416 ~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          416 LGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999876432      246678899999999999999999998 332212  2233555555554 57999999988776 


Q ss_pred             -hhhh--cccHHHHHHhhcCCCC
Q psy10061        279 -PFIK--HMDVEYSRLARDLPLP  298 (325)
Q Consensus       279 -~~~~--~l~~~~~~~~~~l~~~  298 (325)
                       ..+.  .-+.++..++.+.++-
T Consensus       490 ~~~~p~~~~~~~~~~~~~r~~~~  512 (530)
T 2ooe_A          490 FTAFREEYEGKETALLVDRYKFM  512 (530)
T ss_dssp             HHHTHHHHTTCHHHHHGGGTCBT
T ss_pred             HHHCchhccCchHHHHHHHHHhc
Confidence             2221  0022345566665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.98  E-value=4.1e-09  Score=87.25  Aligned_cols=131  Identities=11%  Similarity=-0.026  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAY----------HAAKHLEQAIMMCKELNDLTDVENLAKQA  126 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~aa~~~~~~~~~y~~~g~~~eA~~~~~~A  126 (325)
                      ...+..+...|.++...|+|++|+.+|.+++.+.....+..          ....++.++|.+|..+|++++|+.+++++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44567788889999999999999999999988765543211          12578999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10061        127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA  199 (325)
Q Consensus       127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  199 (325)
                      +.+..      .-..++..+|.+|...+ +++|+.+|++++.+....      ..++..++.++..++++.++.
T Consensus       115 l~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDK------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHST------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCc------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence            98732      12457899999999887 999999999999886543      357788999999888888776

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.98  E-value=4.5e-08  Score=73.98  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLL  216 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~  216 (325)
                      .+..+..+|.++...+ +++|+.+|++++.+....      ..++..+|.++...|++++|+.+|++++.+.+.. ....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4667889999998887 999999999999875432      4678899999999999999999999999988764 3344


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        217 AIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ....++..+|.++...|++++|..+|+++
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44678899999999999999999999998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.97  E-value=8e-09  Score=94.68  Aligned_cols=130  Identities=12%  Similarity=0.041  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG----------NREAASTVLEKGAKSLEELK-SDAALTLYSRAAD  167 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g----------~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~  167 (325)
                      .+..+.++|.++...|++++|+.+|++|+.+.....          .....+.++.++|.+|...+ +++|+.+|+++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            455677888888888888888888888888765431          33445667888888888776 8888888888887


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy10061        168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK  240 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~  240 (325)
                      +...      ...++..+|.+|..+|++++|+..|++++.+.+..      ..++..++.++...+++.++..
T Consensus       302 ~~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence            5432      14577788888888888888888888888764321      1244566777777666666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.96  E-value=5.4e-09  Score=82.84  Aligned_cols=93  Identities=12%  Similarity=0.021  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      ..+..+|.++...+ +++|+.+|++++.+....      ..++..+|.++..+|+|++|+..|++++.+.+..      .
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~   89 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE------P   89 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------T
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------c
Confidence            34444555554444 555555555555443221      2344555555555555555555555555542211      1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        220 RLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       220 ~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+++++|.++...|++++|...|+++
T Consensus        90 ~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           90 RFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            23445555555555555555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.95  E-value=2.8e-08  Score=78.62  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ......+.++|.++...|++++|+.+|++++.+...  +    ..++..+|.++...+ +++|+.+|++++.+.+..   
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   88 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--D----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---   88 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            445678889999999999999999999999876322  2    446889999999887 999999999999986543   


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                         ..++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus        89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence               2578899999999999999999999999987653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.95  E-value=3.1e-08  Score=74.75  Aligned_cols=124  Identities=14%  Similarity=0.140  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      .....-...+...|.++...|++++|..+|.+++......      ..++..+|.+|...|++++|+.++++++.+... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-   78 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-   78 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence            3445667888899999999999999999999998875422      568899999999999999999999999986322 


Q ss_pred             CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        134 GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                       +    ...+..+|.++...+ +++|+.+|++++.+....      ..++..+|.++..+|++
T Consensus        79 -~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 -Y----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred             -C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence             1    457899999999887 999999999999885432      35778899999988875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.94  E-value=3.7e-08  Score=77.01  Aligned_cols=104  Identities=13%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh
Q psy10061         97 YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  175 (325)
Q Consensus        97 ~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~  175 (325)
                      ......+.++|.++...|++++|+.+|++++.+...  +    ..++..+|.++...+ +++|+.+|++++.+.+..   
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   85 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--D----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---   85 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            445667788899999999999999999998865221  2    346788899988887 999999999999876543   


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        176 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       176 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                         ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus        86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence               2467889999999999999999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.92  E-value=2.5e-08  Score=76.72  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+..+|.++...|++++|+.+|++++.+....      ..++.++|.++...+ +++|+.+|++++.+.+..      
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence            5678888999999999999999999988774321      357888999988887 999999999998875442      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..++..+|.++..+|++++|+.+|++++.+.+.
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            357889999999999999999999999998766

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.92  E-value=1.5e-08  Score=95.53  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT  128 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~  128 (325)
                      ..+..+...|.++...|+|++|+.+|.+++.+......         ....+.++.++|.+|.++|++++|+.+|++++.
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            55678888999999999999999999999998876421         223468999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q psy10061        129 LFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL-IRQEI  206 (325)
Q Consensus       129 ~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al  206 (325)
                      +...      -..++.++|.+|...+ +++|+.+|++|+++....      ..++..++.++..++++.+|... |.+.+
T Consensus       346 ~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          346 LDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7432      2567999999999987 999999999999875443      25788999999999999988654 44433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=2.3e-08  Score=91.65  Aligned_cols=132  Identities=13%  Similarity=0.113  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK----------SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA  127 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~  127 (325)
                      ..+..+...|..+...|+|++|+.+|.+++.+.....          .....+.++.++|.+|..+|++++|+.++++|+
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3456688889999999999999999999999765531          345567899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061        128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL  201 (325)
Q Consensus       128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  201 (325)
                      ++..      .-+.++.++|.+|...+ +++|+.+|++|+++....      ..++..++.++..++++.++...
T Consensus       301 ~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          301 EIDP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCc------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7632      22567899999999887 999999999999986542      35777899999988888877643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.89  E-value=1.2e-08  Score=82.60  Aligned_cols=120  Identities=12%  Similarity=0.032  Sum_probs=73.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hh
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LE  151 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~  151 (325)
                      .|++++|...+.+++.....  +    ..++..+|.+|...|++++|+.+|++++.+...  +    ..++..+|.+ +.
T Consensus        23 ~~~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~l~~   90 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQ--N----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--N----AELYAALATVLYY   90 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCS--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--C----HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHH
Confidence            45556666666666554321  1    346677777777777777777777777766432  1    3356667766 54


Q ss_pred             ccC-H--HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        152 ELK-S--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       152 ~~~-~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..+ +  ++|+.+|++++.+....      ..++..+|.+|...|++++|+.+|++++.+.+
T Consensus        91 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           91 QASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             hcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            544 5  77777777777664322      24566777777777777777777777766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.89  E-value=4.4e-08  Score=73.29  Aligned_cols=117  Identities=13%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .+.++..+|.+|...|++++|+.++++++....  .+    ...+..+|.++...+ +++|+.++++++.+....     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----   76 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----   76 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence            456778888888888888888888888876532  11    346778888887776 888888888888764322     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcC
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG  233 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  233 (325)
                       ..++..+|.++...|++++|+.+|++++.+.+..      ..++..++.++...|
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence             3567788888999999999999988887753221      124456666665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.86  E-value=9.7e-09  Score=90.55  Aligned_cols=161  Identities=16%  Similarity=0.025  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ...+..+|..+...|++++|+..|++++.+...  +    ..++..+|.++...+ +++|+.+|++++....   +   .
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~  184 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--N----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---T  184 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--C----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---H
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--c----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---h
Confidence            456788999999999999999999999876432  2    347889999999888 9999999999876543   1   1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTL  257 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l  257 (325)
                      .......+..+...++.++|+..|++++...+.      ...+++++|.++...|++++|...|+++ ..-.+..+..+.
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence            234556777788899999999999999886432      1246788999999999999999999998 333333445677


Q ss_pred             HHHHHHHh-cCCHHHHHHHhcC
Q psy10061        258 EKLLQAFD-EEDPEGARQALND  278 (325)
Q Consensus       258 ~~L~~a~~-~gd~~~~~~~~~~  278 (325)
                      ..|+.++. .|+.+.+....++
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHH
Confidence            78888874 7877777666554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.86  E-value=1.3e-08  Score=82.65  Aligned_cols=158  Identities=13%  Similarity=0.049  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .+...|.++...|++++|+..|++++.+....      ..++..+|.++...+ +++|+.+|++++.+.. .  .    .
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~----~   74 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--N----S   74 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--H----H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--h----H
Confidence            46678889999999999999999998764432      447899999999887 9999999999876654 1  1    1


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHH
Q psy10061        181 YISRAARM-CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLE  258 (325)
Q Consensus       181 ~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~  258 (325)
                      ....++.+ +...++..+|+..|++++.+.+.      ...+++.+|.++...|++++|...|+++ .......+..+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~  148 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK  148 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence            22223333 22334445689999999886432      1246788999999999999999999997 3322233345667


Q ss_pred             HHHHHH-hcCCHHHHHHHhcC
Q psy10061        259 KLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       259 ~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .|+.++ ..|+.+.+....++
T Consensus       149 ~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHHH
Confidence            788887 58888888777665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.85  E-value=5.7e-09  Score=91.76  Aligned_cols=101  Identities=11%  Similarity=0.031  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      +..+...|..+...|++++|+.+|.+++.+...  +    ..++.++|.+|..+|++++|+..+++++.+..      .-
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALELDG------QS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CC
Confidence            356778899999999999999999999887543  2    46889999999999999999999999987622      12


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~  172 (325)
                      ..++.++|.+|...+ +++|+.+|++++++....
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            457889999999887 999999999999988765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=4.9e-08  Score=74.15  Aligned_cols=122  Identities=14%  Similarity=0.045  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10061         55 DYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG  134 (325)
Q Consensus        55 ~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g  134 (325)
                      ..+.-...+...|.++...|++++|..+|.+++......      ..++.++|.+|...|++++|+.++++++.+...  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--   82 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--   82 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence            334556778888999999999999999999998764321      568999999999999999999999999986322  


Q ss_pred             CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061        135 NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  194 (325)
Q Consensus       135 ~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  194 (325)
                          -..++..+|.++...+ +++|+.+|++++.+....      ..++..++.++..+|+
T Consensus        83 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 ----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred             ----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence                2457889999999887 999999999999876543      2467788888887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.83  E-value=2.5e-08  Score=80.69  Aligned_cols=117  Identities=9%  Similarity=0.031  Sum_probs=93.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-
Q psy10061        111 KELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-  188 (325)
Q Consensus       111 ~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-  188 (325)
                      ...|++++|+..+++++....  .+    ..++..+|.+|...+ +++|+.+|++++.+....      ..++..+|.+ 
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l   88 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVL   88 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCC--SC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence            345889999999999987632  22    347899999999887 999999999999987643      3578899999 


Q ss_pred             HHHcCCH--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        189 CVRVKEF--DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       189 ~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +...|++  ++|+.+|++++.+.+..      ..++..+|.++...|++++|...|+++
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            8899999  99999999999864321      246788999999999999999999997

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.82  E-value=1.4e-07  Score=71.64  Aligned_cols=106  Identities=11%  Similarity=0.046  Sum_probs=66.1

Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      +..+|..+...+ +++|+..|++++......   .....++..+|.++..+|+|++|+.+|++++...+...   ....+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~   78 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGG   78 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHH
Confidence            445566665555 777777777776665432   22235666777777777777777777777776543221   12345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      ++.+|.++...|++++|...|+++ ..+.++...
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            667777777777777777777776 444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.82  E-value=9.1e-08  Score=74.72  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      ..-...+..+|..+...+ +++|+.+|++++.+....      ..++..+|.+|..+|+|++|+.+|++++.+.+..   
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   85 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---   85 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            344566778888888877 999999999999875532      3678899999999999999999999999874321   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                         ..+++.+|.++...|++++|...|+++
T Consensus        86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           86 ---PRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               235678999999999999999999997

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.81  E-value=3e-09  Score=78.80  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      +..+..+|.++...+ +++|+.+|++++.+.+..      ..++.++|.++..+|++++|+..|++++.+.+..+.....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            456777888887776 888888888888775432      3577889999999999999999999988876554444445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++..+|.++...|++..|...+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            567788888888888777776666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.80  E-value=1.7e-09  Score=102.54  Aligned_cols=127  Identities=12%  Similarity=-0.005  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .+..+.++|.+|...|++++|+.+|++|+++...      -+.++.++|.+|...+ +++|+.+|++|+++....     
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-----   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----
Confidence            3455667788888889999999999999887322      2567889999998887 999999999999874322     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLV--QLARGDTVAAEKAFK  243 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~--~~~~gd~~~A~~~~~  243 (325)
                       ..++.++|.+|..+|++++|+.+|++++++.+...      .++..++.+  +..+|++++|++.++
T Consensus        74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             46888999999999999999999999998744322      233456666  888899999999999

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.79  E-value=3.7e-08  Score=75.09  Aligned_cols=95  Identities=9%  Similarity=-0.035  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +...|.++...|++++|+..+++++.+...  +    +.++..+|.++...+ +++|+.+|++++++....      ..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~   87 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE--R----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   87 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence            456677777888888888888888765322  1    346777888887776 888888888888775432      346


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      +..+|.+|...|++++|+.+|++++.+.
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7788888888888888888888887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.77  E-value=8.3e-08  Score=73.74  Aligned_cols=94  Identities=16%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      +..+..+|.++...+ +++|+.+|++++.+....      ..++..+|.++..+|++++|+.+|++++.+.+.      .
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------h
Confidence            457889999998887 999999999999986542      468899999999999999999999999987432      2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..+++.+|.++...|++++|...|+++
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            246788999999999999999999997

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.77  E-value=2.5e-07  Score=69.03  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNRE  137 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~  137 (325)
                      .....+...|.++...|++++|...|.+++.....  +    ..++..++.+|...|++++|+.++++++.+..  .+  
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~--   76 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NN--   76 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--cc--
Confidence            34677888999999999999999999999876432  1    45788999999999999999999999987632  12  


Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC
Q psy10061        138 AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK  193 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  193 (325)
                        ...+..+|.++...+ +++|+.++++++.+....      ..++..+|.++...|
T Consensus        77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence              346889999999887 999999999999875432      246677888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.77  E-value=1e-07  Score=72.47  Aligned_cols=104  Identities=11%  Similarity=-0.046  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ++.++|.++...|++++|+..+++++.....   ......++..+|.++...+ +++|+.+|++++.......   ....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHH
Confidence            4667889999999999999999998876443   2333467888999998887 9999999999998875442   2356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ++..+|.+|..+|++++|+.+|++++...+.
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            7889999999999999999999999987543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.76  E-value=7.9e-08  Score=91.87  Aligned_cols=184  Identities=11%  Similarity=0.024  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q psy10061         33 EGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE  112 (325)
Q Consensus        33 eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~  112 (325)
                      +|.+.|.+|.+..       .++   -...+...+.++...|++++|...|.+++.+...  +   ...++.+.+.++.+
T Consensus       304 ~A~~~~~~Al~~~-------~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~~~~~~~~~  368 (530)
T 2ooe_A          304 EAANIYERAISTL-------LKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARR  368 (530)
T ss_dssp             HHHHHHHHHTTTT-------CSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-------Ccc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHHHHHHHHHH
Confidence            7777777776522       122   2456778889999999999999999999875321  1   13578899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKS-LEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  190 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~-~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~  190 (325)
                      .|++++|...|++|+.....  .    ...+...+.+ +...+ +++|..+|+++++.....      ..++..++.++.
T Consensus       369 ~~~~~~A~~~~~~Al~~~~~--~----~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~  436 (530)
T 2ooe_A          369 AEGIKSGRMIFKKAREDART--R----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHTCTTC--C----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHhccCC--c----hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHH
Confidence            99999999999999864211  1    1122333333 33344 999999999999987643      367889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        191 RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       191 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..|++++|..+|++++.....  ++.....++...+......|+.+.+..+++++
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hCCCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999875221  12222335566677777889999999999987

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=1.4e-08  Score=88.98  Aligned_cols=192  Identities=9%  Similarity=-0.056  Sum_probs=128.5

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHHHh--------
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKA-------ATCFKGAKSFQQCKEYLLKAANCYET--------   92 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a-------~~~y~~~g~~~~A~~~~~~a~~~~~~--------   92 (325)
                      .+++.+|.++|.++...-.        +.-   +.+.-.       +.+....+++.+++-.+.+++.+...        
T Consensus        19 ~~d~~~A~~~F~~a~~~dP--------~~~---Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~   87 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDE--------SAC---DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI   87 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCT--------TCH---HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhCh--------hhh---HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence            4677888888887766552        222   222222       34444555556666666666553221        


Q ss_pred             cCCh-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q psy10061         93 NKSA-------YHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSR  164 (325)
Q Consensus        93 ~~~~-------~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~  164 (325)
                      .|-+       ...-......+.++...|++++|.+.+.....     +.+...  ....+|.++...+ +++|+.++++
T Consensus        88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~  160 (282)
T 4f3v_A           88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKS  160 (282)
T ss_dssp             CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1110       11234555667888899999999999887654     334333  6677777877776 9999999986


Q ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061        165 AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFK  243 (325)
Q Consensus       165 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~  243 (325)
                      +...    .+......++..+|.++..+|++++|+.+|++++.-    .. +.....+.+.+|.|+..+|+.++|...|+
T Consensus       161 a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          161 AGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             GGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5322    233334567889999999999999999999998731    11 22234567889999999999999999999


Q ss_pred             hh
Q psy10061        244 EW  245 (325)
Q Consensus       244 ~~  245 (325)
                      +.
T Consensus       233 ~a  234 (282)
T 4f3v_A          233 WL  234 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            97

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.75  E-value=3.6e-05  Score=70.44  Aligned_cols=266  Identities=12%  Similarity=0.082  Sum_probs=188.7

Q ss_pred             cchhhhhhH-HHHHHhhchh---ccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhc-CCHHH
Q psy10061          4 DRKKEEGME-YVKSAEKHSL---STMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGA-KSFQQ   78 (325)
Q Consensus         4 ~~~~~~~~~-~~~~ae~~~~---~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~-g~~~~   78 (325)
                      +|+..+..+ -+++=|.++-   ..+...+++++-.+++.+....+..      -.-..+++.-..+.+.+... +..+.
T Consensus         4 ~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~kak~~k~v~~l~~~~~~~~~~~~~   77 (394)
T 3txn_A            4 DQEGAENDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSS------ISKAKAAKLVRSLVDMFLDMDAGTGI   77 (394)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGG------SCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             ccccCcCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHhcCCCcHHH
Confidence            445333322 3566666655   3556667889888888876655543      22366777777777777553 44555


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHH
Q psy10061         79 CKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDA  157 (325)
Q Consensus        79 A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~  157 (325)
                      -.+....+++-.+.-...+---..=.+++.+|...|+|.+|...+.+...-+....+......++..-..+|...+ +.+
T Consensus        78 ~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k  157 (394)
T 3txn_A           78 EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK  157 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence            6666667776666554555444555689999999999999999999999988888887778888888888888776 999


Q ss_pred             HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCH
Q psy10061        158 ALTLYSRAADVAHGE-DNYKQAAEYISRAARMCV-RVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT  235 (325)
Q Consensus       158 A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~  235 (325)
                      +...|.+|..+.... .++...+.....-|.++. ..++|.+|..+|-++..-+.+.+.+... .++.-+++|-+..++.
T Consensus       158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~-~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKAL-TSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHHcCCH
Confidence            999999999888776 566666777778888888 8999999999999998888777654322 2334467777777774


Q ss_pred             HHHHHHHHhh--cccCCChHHHHHHHHHHHHhcCCHHHHHHHhc
Q psy10061        236 VAAEKAFKEW--GNCCEAPEVQTLEKLLQAFDEEDPEGARQALN  277 (325)
Q Consensus       236 ~~A~~~~~~~--~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~  277 (325)
                      .+-...+..-  ..+ ...+...+..|..++..+|...|...+.
T Consensus       237 ~el~~~l~~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~  279 (394)
T 3txn_A          237 DDVNQLVSGKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALK  279 (394)
T ss_dssp             GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3333332221  334 4566777888999999999988877665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.74  E-value=1.9e-05  Score=72.23  Aligned_cols=217  Identities=12%  Similarity=0.027  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-NDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      .+..++|.+|...|++++-.++.......+..+ ....++....++.+.+... +..+.-++....+++.........--
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678999999999999888887766666555 4567888888888888765 44566778888888887777665533


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  217 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~  217 (325)
                      -..-.++|.+|...+ |.+|++.+.+.+.-....++.....+++..-..+|..++++.++...+.++..+...+ .++..
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence            344458888988877 9999999999999988888778888899899999999999999999999999988776 57778


Q ss_pred             HHHHHHHHHHHHH-hcCCHHHHHHHHHhh-cccCCChHH---HHHH-HHHHHHhcCCHHHHHHHhcC
Q psy10061        218 IGRLAVALVLVQL-ARGDTVAAEKAFKEW-GNCCEAPEV---QTLE-KLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       218 ~~~~~~~lg~~~~-~~gd~~~A~~~~~~~-~~~~~~~e~---~~l~-~L~~a~~~gd~~~~~~~~~~  278 (325)
                      .+.+...-|..++ ..+||..|..+|-++ ..|...+..   .++. .+.-++-.++...+...+.+
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~  245 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG  245 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence            8888899999999 899999999999997 566544332   2222 22333445665555554444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=1.4e-07  Score=69.80  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+..+|.++...|++++|+.++++++.....  +    ..++..+|.++...+ +++|+.++++++++....      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--N----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence            456777788888888888888888888765322  1    346777787777666 888888888887764431      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ..++..+|.++...|++++|+.+|++++.+
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            356778888888888888888888887765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.73  E-value=2.4e-08  Score=92.55  Aligned_cols=191  Identities=18%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061         54 PDYDSAADDYSKA---------ATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAK  124 (325)
Q Consensus        54 ~~~~~A~~~y~~a---------~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~  124 (325)
                      +++++|.++|.++         +..+...|++++|..++..+.+..   ++    +.+...++.+|.+.|++.++.++++
T Consensus        46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~---~~----~~i~~~Li~~Y~Klg~l~e~e~f~~  118 (449)
T 1b89_A           46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RE----SYVETELIFALAKTNRLAELEEFIN  118 (449)
T ss_dssp             ----------------------------------------------------------------------CHHHHTTTTT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---cc----chhHHHHHHHHHHhCCHHHHHHHHc
Confidence            5555555555554         234455666666666555544321   11    2344555666666666666555543


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        125 QAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       125 ~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      .        .+.    ..+..+|..+...+ +++|..+|.++              ..+..+|.++.++|+|++|++.++
T Consensus       119 ~--------pn~----~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~  172 (449)
T 1b89_A          119 G--------PNN----AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGAR  172 (449)
T ss_dssp             C--------C--------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             C--------CcH----HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence            2        111    15667777777666 77777777655              245667777777777777777777


Q ss_pred             HHHHHH---------HHcccHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Q psy10061        204 QEIGYH---------QESEHLL----------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF  264 (325)
Q Consensus       204 ~al~~~---------~~~~~~~----------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~  264 (325)
                      ++....         ...++..          ..+.-+..++.+|...|.+++|..++++.-..++. -..+...|+-++
T Consensus       173 KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il~  251 (449)
T 1b89_A          173 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILY  251 (449)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHH
T ss_pred             HcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHH
Confidence            763220         0011000          00011234667888899999999999987222211 133555667777


Q ss_pred             hcCCHHHHHHHhcC
Q psy10061        265 DEEDPEGARQALND  278 (325)
Q Consensus       265 ~~gd~~~~~~~~~~  278 (325)
                      ..=.|+...++++.
T Consensus       252 ~ky~p~k~~ehl~~  265 (449)
T 1b89_A          252 SKFKPQKMREHLEL  265 (449)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHH
Confidence            66777877777764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=2.7e-07  Score=71.49  Aligned_cols=101  Identities=16%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+..+|.++...|++++|+.+|++++.+   ..+......++.++|.+|...+ +++|+.+|++++.+....      
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence            556777788888888888888888887654   2233334567778888887776 888888888888764332      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      ..++..+|.++..+|++++|+.+|++++.+.
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3577788888888888888888888888764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.72  E-value=2.5e-08  Score=90.16  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHH-----HHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG------NREA-----ASTVLEKGAKSLEELK-SDAALTLYSRAAD  167 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g------~~~~-----aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~  167 (325)
                      +..+.+.|.++...|++++|+.+|++|+.+.....      +...     ...++.++|.+|...+ +++|+.+|+++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555566666666666666666666655422110      0000     0124555555555554 5566666665555


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +....      ..++.++|.+|..+|+|++|+.+|++++.+
T Consensus       259 ~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          259 EEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            43221      235555566666666666666665555554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.71  E-value=1.3e-07  Score=82.79  Aligned_cols=219  Identities=11%  Similarity=-0.025  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA-------IMMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~-------~~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                      ....|..+.- + ..+++..|.++|.++.++....      +.++..+       +.+...+++..+++..+++++.+--
T Consensus         7 ~~~~~~~~~~-~-~~~d~~~A~~~F~~a~~~dP~~------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p   78 (282)
T 4f3v_A            7 LASLFESAVS-M-LPMSEARSLDLFTEITNYDESA------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM   78 (282)
T ss_dssp             HHHHHHHHHH-H-TTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred             HHHHHHHHhc-c-cCCCHHHHHHHHHHHHHhChhh------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            3444544443 4 5789999999999998887654      5567776       6777777778888888888876422


Q ss_pred             H--------cCCH-------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        132 E--------QGNR-------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       132 ~--------~g~~-------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                      .        .|-+       ...-.+....+.++...+ |++|.+.|...+.     ..+.. . ....+|.++.+.++|
T Consensus        79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~-~-~~~~~a~l~~~~~r~  151 (282)
T 4f3v_A           79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEH-L-VAWMKAVVYGAAERW  151 (282)
T ss_dssp             GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHH-H-HHHHHHHHHHHTTCH
T ss_pred             hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCch-H-HHHHHHHHHHHcCCH
Confidence            1        2211       111223444566676666 9999988876653     22222 2 778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC-CChHHHHHHHHHHHH-hcCCHHHH
Q psy10061        196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC-EAPEVQTLEKLLQAF-DEEDPEGA  272 (325)
Q Consensus       196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~-~~~e~~~l~~L~~a~-~~gd~~~~  272 (325)
                      ++|+.+|++++..    .++.....+++.+|.++..+|++.+|+.+|+++ ..-. ......++..++.++ ..|+.+++
T Consensus       152 ~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          152 TDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999865432    233333457788999999999999999999998 2221 221344666778887 69999999


Q ss_pred             HHHhcChhhhcccHHHHHHhhcCC
Q psy10061        273 RQALNDPFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       273 ~~~~~~~~~~~l~~~~~~~~~~l~  296 (325)
                      ...+++-.....+.++...+.+..
T Consensus       228 ~~~l~~a~a~~P~~~~~~aL~~~~  251 (282)
T 4f3v_A          228 VALLEWLQTTHPEPKVAAALKDPS  251 (282)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCcHHHHHHHhCCC
Confidence            999998332222355555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.71  E-value=5.7e-09  Score=98.91  Aligned_cols=125  Identities=17%  Similarity=0.080  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      +.+...|.++...|++++|..+|.+++++....      +.++.++|.+|..+|++++|+.++++|+++..      .-+
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~   74 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDK------KYI   74 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCH
Confidence            344455677778899999999999998875432      67899999999999999999999999998722      224


Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM--CVRVKEFDKAADLIR  203 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~  203 (325)
                      .++.++|.+|...+ +++|+.+|++++++.....      .++..++.+  +..+|++++|++.++
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            57899999999887 9999999999999865442      255567776  888999999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.69  E-value=3.6e-08  Score=89.11  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc------CChHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN------KSAYH-----AAKHLEQAIMMCKELNDLTDVENLAKQA  126 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~------~~~~~-----aa~~~~~~~~~y~~~g~~~eA~~~~~~A  126 (325)
                      ..+..+...|..+...|+|++|+.+|.+++.+....      +....     ...++.++|.+|..+|++++|+.+++++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456777788899999999999999999988764321      11111     1148999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q psy10061        127 ATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKEFDKAADLIRQ  204 (325)
Q Consensus       127 ~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~  204 (325)
                      +.+..      .-..++.++|.+|...+ +++|+.+|++++.+....      ..++..++.+ ....+.++++...|.+
T Consensus       257 l~~~p------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~~  324 (338)
T 2if4_A          257 LTEEE------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYKG  324 (338)
T ss_dssp             HHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98732      12457999999999988 999999999999876543      2466677777 3455678888889998


Q ss_pred             HHHHHH
Q psy10061        205 EIGYHQ  210 (325)
Q Consensus       205 al~~~~  210 (325)
                      ++...+
T Consensus       325 ~l~~~p  330 (338)
T 2if4_A          325 IFKGKD  330 (338)
T ss_dssp             ------
T ss_pred             hhCCCC
Confidence            887644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=8.1e-07  Score=65.51  Aligned_cols=94  Identities=14%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      +..+..+|.++...+ +++|+.+|++++...+..      ..++..+|.++...|++++|+.++++++.+.+.      .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence            456888899988777 999999999999876532      457889999999999999999999999986432      1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++..+|.++...|++++|...|+++
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            246788999999999999999999998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.67  E-value=1.4e-07  Score=71.83  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=77.1

Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      +..+|..+...+ +++|+.+|++++.+....      ..++..+|.++..+|++++|+..|++++.+.+..      ..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~   87 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   87 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence            566787877776 999999999999876543      4688899999999999999999999999874321      236


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +..+|.++...|++++|+..|+++
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            688999999999999999999997

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.64  E-value=1.6e-08  Score=74.68  Aligned_cols=98  Identities=8%  Similarity=-0.057  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+.++|.++...|++++|+.+|++++.+....      ..++.++|.++...+ +++|+.+|++++.+.+..++....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            4678888999999999999999999998773321      456888999998887 999999999999887776555556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      ..++..+|.++..+|+++.|+..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            6788899999999888877766544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.61  E-value=9.2e-08  Score=88.65  Aligned_cols=163  Identities=10%  Similarity=0.075  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHH
Q psy10061         62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL---------FLE  132 (325)
Q Consensus        62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~---------~~~  132 (325)
                      .+..+|..+...|.|++|..+|.++              ..+.+++.++.++|++++|++++++|...         +..
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            4556666666666666666666644              35667777777777777777777776322         223


Q ss_pred             cCCHHHHHHH----------HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc--CCHHHHH
Q psy10061        133 QGNREAASTV----------LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--KEFDKAA  199 (325)
Q Consensus       133 ~g~~~~aa~~----------l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~  199 (325)
                      .|++..|-.+          +..+..+|+..| +++|+.++++++.+-+.      ....+..+|.+|.+-  ++..+.+
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a------h~~~ftel~il~~ky~p~k~~ehl  263 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHL  263 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC------CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3433333221          223445666665 67777777666643211      123455555555433  4555555


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        200 DLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       200 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +.|...+.+.+-+. .....+.|..++-+|...|+++.|....-+.
T Consensus       264 ~~~~~~ini~k~~~-~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          264 ELFWSRVNIPKVLR-AAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHSTTSCHHHHHH-HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            55554444322110 0123456778899999999999998887764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=9.1e-07  Score=68.39  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      -+..+...|..+...|++++|..+|.+++.+.   .+......++.++|.+|...|++++|+.++++++.+...  +   
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~---   98 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--D---   98 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--C---
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--C---
Confidence            35667788999999999999999999987653   233445788999999999999999999999999887322  2   


Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                       ..++..+|.++...+ +++|+.+|++++.+...
T Consensus        99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence             457889999999887 99999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.61  E-value=1.3e-07  Score=71.25  Aligned_cols=89  Identities=8%  Similarity=-0.018  Sum_probs=66.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q psy10061        113 LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR  191 (325)
Q Consensus       113 ~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  191 (325)
                      +|++++|+.+|++++++.   .+...-..++.++|.+|...+ +++|+.+|++++++.+..      ..++..+|.++..
T Consensus         3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~   73 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYN   73 (117)
T ss_dssp             ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence            578888888888887641   112345677888888888877 999999999998876543      4578889999999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q psy10061        192 VKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       192 ~g~~~~A~~~~~~al~~~~  210 (325)
                      +|++++|+.+|++++...+
T Consensus        74 ~g~~~~A~~~~~~al~~~p   92 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETS   92 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            9999999999999887643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.60  E-value=5.7e-07  Score=70.16  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH-
Q psy10061        114 NDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR-  191 (325)
Q Consensus       114 g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-  191 (325)
                      +++++|+.+|+++++    .|+....      +|.+|.... .++|+.+|++|++.    ++    ..+..++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~----~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACE----LNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHH----TTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHc----CCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence            357788888888864    3554422      888887665 77788888888764    33    3577788888888 


Q ss_pred             ---cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061        192 ---VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW  245 (325)
Q Consensus       192 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~  245 (325)
                         .+++++|+.+|+++.+.    ++.    .+.+++|.+|..    .+|+++|..+|+++
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~----g~~----~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL----NDQ----DGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence               78899999998888753    332    356788888888    88888888888887

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.59  E-value=3.5e-07  Score=80.26  Aligned_cols=101  Identities=12%  Similarity=0.042  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+...|.++...|++++|+.+|++++.+...  +    ..++.++|.+|...+ +++|+..|++++++....      
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence            457889999999999999999999999987321  2    457899999999887 999999999999764322      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            4688899999999999999999999999987754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.58  E-value=1.3e-07  Score=69.37  Aligned_cols=96  Identities=15%  Similarity=0.033  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      ++..+|.++...|++++|+.++++++.+..  .+    ...+..+|.++...+ +++|+.+|++++++....    ....
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~   77 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKD   77 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHH
Confidence            445566667777777777777777665421  11    234566666666655 777777777766654330    0134


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy10061        181 YISRAARMCVRV-KEFDKAADLIRQEIG  207 (325)
Q Consensus       181 ~~~~lg~~~~~~-g~~~~A~~~~~~al~  207 (325)
                      ++..+|.++..+ |++++|++++++++.
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            566677777777 777777777666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=1.2e-07  Score=69.44  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      .+..+|.++...+ +++|+.+|++++++....      ..++..+|.++..+|++++|+.+|++++.+.+.    .....
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~   77 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKD   77 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHH
Confidence            4667888888877 999999999999875432      357889999999999999999999999876432    00124


Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHhh
Q psy10061        221 LAVALVLVQLAR-GDTVAAEKAFKEW  245 (325)
Q Consensus       221 ~~~~lg~~~~~~-gd~~~A~~~~~~~  245 (325)
                      ++..+|.++... |++++|.+++++.
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            678899999999 9999999999997

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.55  E-value=1e-06  Score=68.62  Aligned_cols=108  Identities=12%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--
Q psy10061         75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE--  152 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~--  152 (325)
                      ++++|..+|.++++.    ++...    .  +|.+|...+..++|+.+|++|++.    |+.    .++.++|.+|..  
T Consensus        10 d~~~A~~~~~~aa~~----g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~----~a~~~Lg~~y~~G~   71 (138)
T 1klx_A           10 DLKKAIQYYVKACEL----NEMFG----C--LSLVSNSQINKQKLFQYLSKACEL----NSG----NGCRFLGDFYENGK   71 (138)
T ss_dssp             HHHHHHHHHHHHHHT----TCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHcC----CCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----CCH----HHHHHHHHHHHcCC
Confidence            567777777777643    33322    2  899999888899999999999864    664    478999999986  


Q ss_pred             --c-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy10061        153 --L-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGY  208 (325)
Q Consensus       153 --~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  208 (325)
                        . ++++|+.+|++|++.    ++    ..+..++|.+|..    .+++++|+.+|+++.+.
T Consensus        72 g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           72 YVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence              3 499999999999864    33    3578899999999    89999999999999774

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.53  E-value=5e-07  Score=67.90  Aligned_cols=89  Identities=10%  Similarity=0.052  Sum_probs=69.1

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .|++++|+.+|++|.+..        .+.+.-...+..+|.+|...|++++|+.+|.+++.+....      ..++.++|
T Consensus         3 ~g~~~~A~~~~~~al~~~--------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~   68 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASG--------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYA   68 (117)
T ss_dssp             ----CCCHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcC--------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHH
Confidence            357889999999887742        2234556788899999999999999999999998876543      46788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      .+|..+|++++|+.++++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.38  E-value=3.6e-06  Score=62.71  Aligned_cols=90  Identities=9%  Similarity=-0.033  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy10061         32 EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK  111 (325)
Q Consensus        32 ~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~  111 (325)
                      .+|+++|.++.+...        +.   ...+..+|.+|...|++++|..+|.+++.+....      ..++.++|.+|.
T Consensus         2 ~~a~~~~~~al~~~p--------~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQGT--------DN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTTC--------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCC--------Cc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHH
Confidence            357778887766442        22   3567889999999999999999999998875432      457889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHH
Q psy10061        112 ELNDLTDVENLAKQAATLFLEQGNREA  138 (325)
Q Consensus       112 ~~g~~~eA~~~~~~A~~~~~~~g~~~~  138 (325)
                      .+|++++|+.+|++++.+....++...
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGDQQV   91 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccccccHHH
Confidence            999999999999999999888877553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.35  E-value=4e-06  Score=62.46  Aligned_cols=65  Identities=15%  Similarity=-0.010  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      .+..+|.+|...+ +++|+.+|++++.+....      ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            4455555555444 555555555555543221      2344555555555555555555555555554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.35  E-value=7e-06  Score=59.82  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      .++..+|.+|...+ +++|+.+|++++++....      ..++..+|.+|..+|++++|+..|++++.+.+..++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            35667777777665 777777777777765432      2366777777777777777777777777776655543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.35  E-value=4.5e-06  Score=58.82  Aligned_cols=83  Identities=12%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      .+..+..+|.++...+ +++|+.+|++++.+....      ..++..+|.++...|++++|+.+|++++.+.+..     
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----   76 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----   76 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence            3455666666666655 777777777777654321      3466677777777777777777777777653211     


Q ss_pred             HHHHHHHHHHHHHhcC
Q psy10061        218 IGRLAVALVLVQLARG  233 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~g  233 (325)
                       ..++.++|.++...|
T Consensus        77 -~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 -AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -HHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHhcC
Confidence             134456666665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.33  E-value=7.5e-06  Score=59.68  Aligned_cols=76  Identities=9%  Similarity=-0.022  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ...+..+|.+|...|++++|+.+|.+++++....      ..++.++|.+|..+|++++|+.+|++++.+....++....
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            3567788999999999999999999998876543      2478899999999999999999999999998888886644


Q ss_pred             HH
Q psy10061        140 ST  141 (325)
Q Consensus       140 a~  141 (325)
                      ..
T Consensus        81 ~~   82 (100)
T 3ma5_A           81 SE   82 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.29  E-value=6.9e-06  Score=57.82  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChh
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      ..+.++..+|.+|...|++++|+.++++++.+...  +    ...+..+|.++...+ +++|+.+|++++++....    
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----   76 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence            34566777777777778888888888877765321  1    345677777777766 888888888887764322    


Q ss_pred             hHHHHHHHHHHHHHHcC
Q psy10061        177 QAAEYISRAARMCVRVK  193 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g  193 (325)
                        ..++..+|.++..+|
T Consensus        77 --~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 --AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHhcC
Confidence              345667777766543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.28  E-value=1.3e-06  Score=69.55  Aligned_cols=87  Identities=13%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10061         73 AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLT----------DVENLAKQAATLFLEQGNREAASTV  142 (325)
Q Consensus        73 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~----------eA~~~~~~A~~~~~~~g~~~~aa~~  142 (325)
                      .+.|++|+..+.+++++....      +.++.+.|.++..+++++          +|+..|++|+.+--.      ...+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A   82 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHH
Confidence            445778888888887766542      568888888888887764          666666666655211      2335


Q ss_pred             HHHHHHHHhcc------------CHHHHHHHHHHHHHHHhc
Q psy10061        143 LEKGAKSLEEL------------KSDAALTLYSRAADVAHG  171 (325)
Q Consensus       143 l~~lg~~~~~~------------~~~~A~~~y~~Al~~~~~  171 (325)
                      +.++|.+|...            ++++|+.+|++|+++-..
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            56666666543            266666666666666443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.23  E-value=1.4e-06  Score=69.35  Aligned_cols=87  Identities=10%  Similarity=-0.049  Sum_probs=66.5

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHhcCChHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF----------QQCKEYLLKAANCYETNKSAYH   98 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~   98 (325)
                      +.+++|++.+++|.++..        +   -.+.+.+.|.++..++++          ++|+.+|++|+++..+.     
T Consensus        16 ~~feeA~~~~~~Ai~l~P--------~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-----   79 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNP--------L---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCT--------T---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHHHHCC--------C---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-----
Confidence            367888888888877652        2   235677778888877665          59999999998887653     


Q ss_pred             HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Q psy10061         99 AAKHLEQAIMMCKELN-----------DLTDVENLAKQAATLFLE  132 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g-----------~~~eA~~~~~~A~~~~~~  132 (325)
                       ..++.++|++|..+|           ++++|+.+|++|+++-..
T Consensus        80 -~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           80 -DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             -HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence             568999999999875           899999999999887443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.21  E-value=5.9e-05  Score=66.90  Aligned_cols=188  Identities=10%  Similarity=0.036  Sum_probs=131.1

Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCHH
Q psy10061         67 ATCFKGAK--SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMC----KEL---NDLTDVENLAKQAATLFLEQGNRE  137 (325)
Q Consensus        67 ~~~y~~~g--~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y----~~~---g~~~eA~~~~~~A~~~~~~~g~~~  137 (325)
                      +.+...++  ++++++.++..++....+.-.      ++..-+.+.    ...   +++++++.++.++++...  .++.
T Consensus        74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p--kny~  145 (306)
T 3dra_A           74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP--KNHH  145 (306)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT--TCHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHCcccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC--CCHH
Confidence            45666777  999999999999887665421      233333333    444   789999999999987533  3333


Q ss_pred             HHHHHHHHHHHHHhccC-HH--HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Q psy10061        138 AASTVLEKGAKSLEELK-SD--AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE------FDKAADLIRQEIGY  208 (325)
Q Consensus       138 ~aa~~l~~lg~~~~~~~-~~--~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~  208 (325)
                          ++..-+.++...+ ++  ++++++.++++.....      ..+++..+.+....++      ++++++++++++.+
T Consensus       146 ----aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          146 ----VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             ----HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence                5777777777776 66  9999999999865433      2578888888888887      99999999999886


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHhhcccC--CChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        209 HQESEHLLAIGRLAVALVLVQLARGDTVA-AEKAFKEWGNCC--EAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~lg~~~~~~gd~~~-A~~~~~~~~~~~--~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .+..     . .+++.++.++...|.... ..++..++-...  ......++.-|++++ +.|+.+.+.+++..
T Consensus       216 ~p~n-----~-SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          216 CPQN-----P-STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             CSSC-----H-HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCC-----c-cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            4322     1 255667777777777444 445555551111  122345788888887 58999999988877

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.16  E-value=6.3e-05  Score=66.58  Aligned_cols=167  Identities=11%  Similarity=0.070  Sum_probs=92.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         64 SKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        64 ~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                      .-+|.++...|++++|+..+.+.+...    .......++..++.+|..+|+++.|...+++...+....  ...--..+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~----~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l  177 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDND----EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI  177 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccC----CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence            467777777788888887777653211    112334566677777888888888877777754331100  00001122


Q ss_pred             HHHHHH----Hhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH---
Q psy10061        144 EKGAKS----LEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL---  215 (325)
Q Consensus       144 ~~lg~~----~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---  215 (325)
                      ..++..    .... ++.+|...|++..+.+.   +.. ....+.+   ++..+|++++|...++..+..+.+.++.   
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p---~~~-~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~  250 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFP---TWK-TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA  250 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC---SHH-HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC---Ccc-cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence            333322    1222 27777777777644332   111 1122222   6777788888888877666665442110   


Q ss_pred             -HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        216 -LAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       216 -~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                       ...+.++.+++.+....|+  .|.+++++.
T Consensus       251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL  279 (310)
T 3mv2_B          251 VLYKPTFLANQITLALMQGL--DTEDLTNQL  279 (310)
T ss_dssp             HSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence             1123455567777777776  666666665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=98.07  E-value=0.0043  Score=54.76  Aligned_cols=220  Identities=11%  Similarity=0.027  Sum_probs=149.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ  133 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~  133 (325)
                      ++|-+|-+.|.-+..=|..+++|++|++.+...+..+-+.+....+++...-+.++|.+.+..- ..+.           
T Consensus        27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~-----------   94 (312)
T 2wpv_A           27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDIS-----------   94 (312)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHH-----------
T ss_pred             cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHH-----------
Confidence            7899999999999999999999999999988877777766666666666556666666544221 1112           


Q ss_pred             CCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Q psy10061        134 GNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQE----I  206 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l  206 (325)
                               ..++..++..-.  -..-..+..+|+.+..+.+. ..+-.+.+..+|..|.+-|++.+|..+|-..    .
T Consensus        95 ---------~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~  165 (312)
T 2wpv_A           95 ---------VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSM  165 (312)
T ss_dssp             ---------HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred             ---------HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccH
Confidence                     333444433321  11124566777777765543 3444578889999999999999999987421    1


Q ss_pred             HH--------HHHc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cc---------------------cCCChHH
Q psy10061        207 GY--------HQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GN---------------------CCEAPEV  254 (325)
Q Consensus       207 ~~--------~~~~--~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~---------------------~~~~~e~  254 (325)
                      +.        ..+.  +.+........+.+..|+..|+...|...|..+ ..                     |....--
T Consensus       166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pll  245 (312)
T 2wpv_A          166 IKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDL  245 (312)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccH
Confidence            11        1222  444445555567778889999999999999875 11                     2334556


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhcC--hhhhcccHHHHHHhhc
Q psy10061        255 QTLEKLLQAFDEEDPEGARQALND--PFIKHMDVEYSRLARD  294 (325)
Q Consensus       255 ~~l~~L~~a~~~gd~~~~~~~~~~--~~~~~l~~~~~~~~~~  294 (325)
                      .++.-|..+++.++.+.|+..+++  +.++.....+.+|+..
T Consensus       246 nF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~~~~~~L~~Ig~~  287 (312)
T 2wpv_A          246 NFLQLLLITCQTKDKSYFLNLKNHYLDFSQAYKSELEFLGQE  287 (312)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHCHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788889999999999999887  5555556666666665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.91  E-value=0.0026  Score=62.57  Aligned_cols=220  Identities=6%  Similarity=0.022  Sum_probs=139.4

Q ss_pred             HHHHHHHHHhcCCHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------
Q psy10061         63 YSKAATCFKGAKSFQQCK-EYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ--------  133 (325)
Q Consensus        63 y~~a~~~y~~~g~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~--------  133 (325)
                      +...+......|+.++|. ..|.+|+......      ...+...+.+....|++++|...|++++......        
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~  419 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNS------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD  419 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            334455566678888887 9999987644321      3456778888889999999999999999875311        


Q ss_pred             CC--------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy10061        134 GN--------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIR  203 (325)
Q Consensus       134 g~--------~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~  203 (325)
                      ..        ......++...+.+.... +.+.|...|.+|++......     ..++...+.+-...+ +++.|..+|+
T Consensus       420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife  494 (679)
T 4e6h_A          420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLE  494 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            10        001233455555554443 48999999999987522211     235556666666665 5999999999


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH-HHHHHHHHHH-hcCCHHHHHHHhcC-h
Q psy10061        204 QEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV-QTLEKLLQAF-DEEDPEGARQALND-P  279 (325)
Q Consensus       204 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~-~~l~~L~~a~-~~gd~~~~~~~~~~-~  279 (325)
                      +++..++....      .+...+......|+.+.|...|+++ ....+..+. .+.....+-- ..|+.+.+....++ .
T Consensus       495 ~~Lk~~p~~~~------~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~  568 (679)
T 4e6h_A          495 LGLKYFATDGE------YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF  568 (679)
T ss_dssp             HHHHHHTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHCCCchH------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99998654322      3344556667789999999999998 333322233 3333444432 47888888887776 2


Q ss_pred             hhhcccHHHHHHhhcCCCCC
Q psy10061        280 FIKHMDVEYSRLARDLPLPS  299 (325)
Q Consensus       280 ~~~~l~~~~~~~~~~l~~~~  299 (325)
                      ..-.-++.+..+..+..+++
T Consensus       569 ~~~P~~~~~~~f~~ry~~~~  588 (679)
T 4e6h_A          569 EKFPEVNKLEEFTNKYKVLD  588 (679)
T ss_dssp             HHSTTCCHHHHHHHHTCBTT
T ss_pred             HhCCCCcHHHHHHHHhcCCc
Confidence            11122345555555555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.90  E-value=0.00019  Score=63.53  Aligned_cols=180  Identities=10%  Similarity=0.025  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE  180 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~  180 (325)
                      .+.-+|.+|...|++++|+.++.+.+.    .+.......++..++.++...+ .+.|.+.+++..+..+..  ....-.
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~  175 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNE  175 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchH
Confidence            345889999999999999999998743    2221244557778888888887 999999999876653210  000113


Q ss_pred             HHHHHH--HHHHHcC--CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----cccC---
Q psy10061        181 YISRAA--RMCVRVK--EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCC---  249 (325)
Q Consensus       181 ~~~~lg--~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~----~~~~---  249 (325)
                      ++..++  ++....|  ++.+|+.+|++....+   ++ +.....+++   +++.+|++++|...++..    +.+.   
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTF---PT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence            444554  4455556  9999999999965432   22 112223333   899999999999999875    3331   


Q ss_pred             --CChHHHHHHHHHHH-HhcCCHHHHHHHhcC--------h---hhhcccHHHHHHhhcCC
Q psy10061        250 --EAPEVQTLEKLLQA-FDEEDPEGARQALND--------P---FIKHMDVEYSRLARDLP  296 (325)
Q Consensus       250 --~~~e~~~l~~L~~a-~~~gd~~~~~~~~~~--------~---~~~~l~~~~~~~~~~l~  296 (325)
                        ......++.+++.. +..|+  .+.+.+++        +   -+...+..+.+++.+..
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky~  307 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYD  307 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhc
Confidence              24567788776554 34565  33344333        1   12334455666666664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.013  Score=54.58  Aligned_cols=117  Identities=8%  Similarity=0.018  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHH-HHhcCCChh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE-LKSDAALTLYSRAAD-VAHGEDNYK  176 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-~~~~~A~~~y~~Al~-~~~~~~~~~  176 (325)
                      .++....++.+|...|++.+|.+.......-....-+...-...+.....+|.. .++.+|...+.++.. .+.....+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            455566667777777777777766665532211222333333333333334333 347777777777653 333333444


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                      .....+.-.|.++...++|.+|..+|.++...+...++.
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~  254 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE  254 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence            445566667777777777777777777777665554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.78  E-value=0.0016  Score=51.66  Aligned_cols=107  Identities=8%  Similarity=-0.074  Sum_probs=76.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHH-----
Q psy10061        145 KGAKSLEELKSDAALTLYSRAADVAHGEDN---YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL-----  216 (325)
Q Consensus       145 ~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----  216 (325)
                      ++-.++...-|+.|+-....++.+.....+   +.....++..+|..+...|+|..|...|+++|.+.+.+....     
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            334444444488888888887777655433   456677888889999999999999999999888766432110     


Q ss_pred             --------------HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCC
Q psy10061        217 --------------AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA  251 (325)
Q Consensus       217 --------------~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~  251 (325)
                                    ......+.++.||...+++..|+..++..+.-..+
T Consensus       106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt  154 (167)
T 3ffl_A          106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT  154 (167)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence                          12256688999999999999999999998544433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.77  E-value=0.00021  Score=52.41  Aligned_cols=67  Identities=9%  Similarity=-0.072  Sum_probs=43.4

Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      +..+|.++...+ |..|+.+|++|+........ ......++..+|.+|.++|++++|+.++++++.+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            445666666555 77777777777766644321 12234677777777777777777777777777653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.65  E-value=0.00022  Score=52.25  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        181 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       181 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      -...+|..+...|+|..|+.+|++|+........ ......++..+|.++..+|+++.|..+++++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3458999999999999999999999998754321 1234467889999999999999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.65  E-value=0.00012  Score=52.46  Aligned_cols=58  Identities=12%  Similarity=0.068  Sum_probs=35.1

Q ss_pred             HHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        146 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE-YISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       146 lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                      .|..+...+ +++|+.+|++++++....      .. ++..+|.+|..+|++++|+.+|++++.+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            444444444 666666666666653321      23 56667777777777777777777776653

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=97.64  E-value=0.029  Score=49.76  Aligned_cols=227  Identities=11%  Similarity=0.053  Sum_probs=145.5

Q ss_pred             CCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         53 KPDY---DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        53 ~~~~---~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      .++|   -+|-+.|.-+.+=|...++|++|++.+...+..+-+.+....+++...-+.++|.+.+-.-. .+...+.+++
T Consensus        25 ~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L  103 (336)
T 3lpz_A           25 EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGC  103 (336)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence            3888   88999999988889999999999998888877777777666666666666677666542110 1233334444


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH----
Q psy10061        130 FLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQ----  204 (325)
Q Consensus       130 ~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----  204 (325)
                      +......                 .+ .=..+..+|+.+....+ ...+-.+....+|.+|.+-++|.+|..+|--    
T Consensus       104 ~~~~~~~-----------------~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~  165 (336)
T 3lpz_A          104 LRLFQPG-----------------EP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE  165 (336)
T ss_dssp             HTTSCTT-----------------CH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHhCCCC-----------------Cc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence            3333211                 11 12445666666666533 2333346778899999999999999888731    


Q ss_pred             HHHHH-------HHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--------cc---------------cCCChHH
Q psy10061        205 EIGYH-------QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--------GN---------------CCEAPEV  254 (325)
Q Consensus       205 al~~~-------~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--------~~---------------~~~~~e~  254 (325)
                      ..+.+       .....+.....+..+.+..|+..++...|...+..+        +.               |....--
T Consensus       166 s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL  245 (336)
T 3lpz_A          166 SPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL  245 (336)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH
T ss_pred             hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH
Confidence            11111       112223344556677888899999999999987765        11               2223334


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhcC--hhhhcc----c---HHHHHHhhcCCCC
Q psy10061        255 QTLEKLLQAFDEEDPEGARQALND--PFIKHM----D---VEYSRLARDLPLP  298 (325)
Q Consensus       255 ~~l~~L~~a~~~gd~~~~~~~~~~--~~~~~l----~---~~~~~~~~~l~~~  298 (325)
                      .++.-|..+++.+..+.|...+.+  +.++..    .   ..+.++-..++.|
T Consensus       246 NFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~p  298 (336)
T 3lpz_A          246 NFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRP  298 (336)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCCC
Confidence            577778888999999999988876  433332    2   3455555566654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.62  E-value=0.0025  Score=62.58  Aligned_cols=200  Identities=10%  Similarity=0.080  Sum_probs=136.6

Q ss_pred             ccHHHHH-HHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------cCC----
Q psy10061         29 RKKEEGM-EYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET--------NKS----   95 (325)
Q Consensus        29 ~~~~eA~-~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~--------~~~----   95 (325)
                      ++.++|. +.|.+|......           ...++...+.+....|++++|...|.+++.....        ...    
T Consensus       357 ~~~~~a~r~il~rAi~~~P~-----------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPN-----------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            4566775 777777654422           1244556677778889999999999999986521        110    


Q ss_pred             ----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHH
Q psy10061         96 ----AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVA  169 (325)
Q Consensus        96 ----~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-~-~~~A~~~y~~Al~~~  169 (325)
                          ......++...+.+..+.|..+.|...+.+|+.......     ...+...+.+-... + ++.|...|+++++.+
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence                112445677778888888999999999999976511111     22344555554333 3 899999999999988


Q ss_pred             hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc
Q psy10061        170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC  248 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~  248 (325)
                      ....      ..+...+.+....|+.+.|..+|++++.....   ......++......-...|+.+.+....+++ ..|
T Consensus       501 p~~~------~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          501 ATDG------EYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             CCch------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7542      34556777888899999999999999875431   1122245555666667789999999999997 555


Q ss_pred             CCChH
Q psy10061        249 CEAPE  253 (325)
Q Consensus       249 ~~~~e  253 (325)
                      .....
T Consensus       572 P~~~~  576 (679)
T 4e6h_A          572 PEVNK  576 (679)
T ss_dssp             TTCCH
T ss_pred             CCCcH
Confidence            44433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.62  E-value=0.00038  Score=67.11  Aligned_cols=173  Identities=6%  Similarity=-0.029  Sum_probs=120.4

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhcCChHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKS----------FQQCKEYLLKAANCYETNKSAYH   98 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~   98 (325)
                      ...++|++++.++....        +++..   ++..=+.+....++          +++++.++.+++....+.     
T Consensus        43 ~~~eeal~~~~~~l~~n--------P~~~t---aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----  106 (567)
T 1dce_A           43 ELDESVLELTSQILGAN--------PDFAT---LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----  106 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC--------TTCHH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             CCCHHHHHHHHHHHHHC--------chhHH---HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----
Confidence            34567788888887655        22222   23333445555555          899999999998766543     


Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCC
Q psy10061         99 AAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~  174 (325)
                       ..++..-+.+....+  +++++++++.+++++..+  ++    .++...+.++...+  ++++++++.++++.....  
T Consensus       107 -y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--N~----~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--  177 (567)
T 1dce_A          107 -YGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--  177 (567)
T ss_dssp             -HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--
T ss_pred             -HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc--cc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--
Confidence             346777788888899  779999999999986432  33    25777777777665  899999999998754332  


Q ss_pred             hhhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHH
Q psy10061        175 YKQAAEYISRAARMCVRV--------------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV  236 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~  236 (325)
                          ..++...+.++..+              +.++++++++.+++.+.+...      .+|+..+.++...+.+.
T Consensus       178 ----~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~------saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          178 ----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ------SAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             ----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS------HHHHHHHHHHSCCCCCS
T ss_pred             ----ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHhcCCCcc
Confidence                35788888888775              668999999999998744321      24555677776666633

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.62  E-value=0.00044  Score=49.34  Aligned_cols=57  Identities=7%  Similarity=0.004  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR-LAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...|.++...|++++|+..|++++.+.+..      .. +++.+|.++...|++++|..+|+++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467899999999999999999998863221      23 6788999999999999999999998

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.54  E-value=0.0049  Score=54.48  Aligned_cols=152  Identities=8%  Similarity=-0.040  Sum_probs=110.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      .......++|+.++.+++.+....      ..+++.-+.+...++  ++++++.++.+++.+..+.-.      +++.-+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------aW~~R~  110 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------IWNYRQ  110 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------HHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------HHHHHH
Confidence            334444567888888887766543      335666677888888  999999999999876443322      344444


Q ss_pred             HHH----hcc---C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcccHHH
Q psy10061        148 KSL----EEL---K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD--KAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       148 ~~~----~~~---~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~  217 (325)
                      .++    ...   . +++++.++.++++...+.      ..++...+.+....|.++  ++++++.+++++...  ++  
T Consensus       111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~--N~--  180 (306)
T 3dra_A          111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK--NN--  180 (306)
T ss_dssp             HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--CH--
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--CH--
Confidence            444    333   3 899999999999876543      358888999999999999  999999999875322  22  


Q ss_pred             HHHHHHHHHHHHHhcCC------HHHHHHHHHhh
Q psy10061        218 IGRLAVALVLVQLARGD------TVAAEKAFKEW  245 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd------~~~A~~~~~~~  245 (325)
                        .++...+.+....|+      ++++++++.++
T Consensus       181 --sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a  212 (306)
T 3dra_A          181 --SAWSHRFFLLFSKKHLATDNTIDEELNYVKDK  212 (306)
T ss_dssp             --HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence              355666777777776      88999999886

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.013  Score=54.51  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLL  216 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~  216 (325)
                      -++....++.+|+..+ +.+|...++....-.....+.....+.+.....+|...++|.+|...+.++....... ..+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4566778999999887 9999999988764444455666667888899999999999999999999986544433 4566


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        217 AIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       217 ~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ....++...|.++...++|.+|..+|.++
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            67788899999999999999999999986

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.51  E-value=0.0034  Score=49.76  Aligned_cols=103  Identities=16%  Similarity=0.044  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCCh--
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN---REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--  175 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~--  175 (325)
                      ++..-.......+.|+.|+-....++.+.....+   +...++++..+|+.+...+ |..|...|++|+.+.+...+.  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3444444445567888888888888777665544   5677777888888877766 888888888888877643211  


Q ss_pred             -----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061        176 -----------------KQAAEYISRAARMCVRVKEFDKAADLIRQ  204 (325)
Q Consensus       176 -----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  204 (325)
                                       ....++..+++.+|.+++++.+|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                             12347888999999999999999988653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.43  E-value=0.0054  Score=58.11  Aligned_cols=169  Identities=11%  Similarity=0.036  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHH---HcCC
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDV--ENLAKQAATLFL---EQGN  135 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA--~~~~~~A~~~~~---~~g~  135 (325)
                      ..+..+.+.+.+.|+.++|...|.++.+.--..     -..+|+.+..+|...+...++  ....++|.+++.   ..|-
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~  101 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV  101 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence            367777777778888888888777765432111     134677777777666543211  111233333332   2333


Q ss_pred             HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q psy10061        136 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  214 (325)
Q Consensus       136 ~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  214 (325)
                      ... ..+|+.+-..|-..+ .++|...+++...    .|-... ..+|+.+-..|.+.|+.++|.++|++..+    .|-
T Consensus       102 ~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~  171 (501)
T 4g26_A          102 VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVE----SEV  171 (501)
T ss_dssp             CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC
T ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHh----cCC
Confidence            222 235556666665555 7777777665432    222122 24666777777777777777777766543    121


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        215 LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       215 ~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ... ..+|..+..+|...|+.++|.+.|++.
T Consensus       172 ~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          172 VPE-EPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            111 135566777777777777777777775

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.34  E-value=0.0038  Score=56.09  Aligned_cols=188  Identities=9%  Similarity=-0.051  Sum_probs=116.2

Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         67 ATCFKGAK-SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL-N-DLTDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        67 ~~~y~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~-g-~~~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                      +.+...++ .+++++.++..++....+.      ..++..-+.+.... + ++++++.++.++++...  .++.    ++
T Consensus        95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp--kNy~----AW  162 (349)
T 3q7a_A           95 FSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP--KNYH----TW  162 (349)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT--TCHH----HH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCHH----HH
Confidence            34556677 5999999999988665443      23555556666666 6 88899999999885422  2222    34


Q ss_pred             HHHHHHHhccC---------HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Q psy10061        144 EKGAKSLEELK---------SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE-------FDKAADLIRQEIG  207 (325)
Q Consensus       144 ~~lg~~~~~~~---------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~  207 (325)
                      ..-+-++...+         ..++++++.++++....+      ..+++..+.++...++       ++++++++++++.
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~  236 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH  236 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            44444444332         348999999998865443      3588889999988887       7899999999988


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhh-ccc----CCChHHHHHHHHHH
Q psy10061        208 YHQESEHLLAIGRLAVALVLVQLARGDT--------------------VAAEKAFKEW-GNC----CEAPEVQTLEKLLQ  262 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~lg~~~~~~gd~--------------------~~A~~~~~~~-~~~----~~~~e~~~l~~L~~  262 (325)
                      +.+...      .+++.+.-++...|..                    ..-.+...++ ..-    ....-..++.-|++
T Consensus       237 ~~P~n~------SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d  310 (349)
T 3q7a_A          237 LIPHNV------SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD  310 (349)
T ss_dssp             HCTTCH------HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred             hCCCCH------HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence            643321      1333444455544442                    1122222222 110    01223457778888


Q ss_pred             HH-hcCCHHHHHHHhcC
Q psy10061        263 AF-DEEDPEGARQALND  278 (325)
Q Consensus       263 a~-~~gd~~~~~~~~~~  278 (325)
                      .+ +.|+.+.+.+++..
T Consensus       311 ~~~~~~~~~~a~~~~~~  327 (349)
T 3q7a_A          311 SFIEQNRVDDAAKVFEK  327 (349)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHH
Confidence            87 58888888888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.28  E-value=0.0026  Score=61.22  Aligned_cols=146  Identities=6%  Similarity=-0.096  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061         76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND----------LTDVENLAKQAATLFLEQGNREAASTVLEK  145 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~----------~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~  145 (325)
                      .++|++.+.+++.+..+.      ..++..-+.+....|+          +++++.++++++....  .++    .++..
T Consensus        45 ~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y----~aW~h  112 (567)
T 1dce_A           45 DESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSY----GTWHH  112 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCH----HHHHH
T ss_pred             CHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCH----HHHHH
Confidence            356788888877665543      2345555666666666          8899999999886532  222    35777


Q ss_pred             HHHHHhccC---HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        146 GAKSLEELK---SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       146 lg~~~~~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      -+.++...+   +++++.++.+++++..+.      ..++...+.+....| .++++++++.++++....  +.    .+
T Consensus       113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~----sa  180 (567)
T 1dce_A          113 RCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NY----SS  180 (567)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CH----HH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--Cc----cH
Confidence            777777665   699999999999976543      358888999999999 999999999999875322  11    24


Q ss_pred             HHHHHHHHHhc--------------CCHHHHHHHHHhh
Q psy10061        222 AVALVLVQLAR--------------GDTVAAEKAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~--------------gd~~~A~~~~~~~  245 (325)
                      |+..+.++...              +.++++++++.++
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence            55566666553              5578899998887

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.28  E-value=0.01  Score=56.14  Aligned_cols=95  Identities=9%  Similarity=0.076  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      .+|+.+...|.+.|++++|...+++..    +.|-... ..+|+.+-..|-..+ .++|.+.+.+..+    .|-... .
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~~Pd-~  175 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVE----SEVVPE-E  175 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCCCC-H
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCC-H
Confidence            356666666666666666665555542    2221111 223444444444444 6666665555432    121111 1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                      .+|..+-..|.+.|+.++|.+++++.
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            35555666666666666666665554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.25  E-value=0.045  Score=48.75  Aligned_cols=180  Identities=9%  Similarity=-0.019  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q psy10061         76 FQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL  153 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~  153 (325)
                      +++++.++..++....+.      ..++..-+.+....+  .+++++.++.+++++..  .++.    ++..-+.++...
T Consensus        90 l~~EL~~~~~~L~~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~----AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFH----CWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHh
Confidence            567777777776655432      235555667777777  48999999999987532  3333    566667777766


Q ss_pred             C--HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        154 K--SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV--------------KEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       154 ~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      +  ++++++++.++++....+      ..+++..+.++...              +.++++++++.+++.+.+...+   
T Consensus       158 ~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S---  228 (331)
T 3dss_A          158 AVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---  228 (331)
T ss_dssp             TCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH---
T ss_pred             CcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH---
Confidence            5  699999999999865443      25777888887776              5688999999999887544322   


Q ss_pred             HHHHHHHHHHHHHhcC----------CHHHHHHHHHhh-cccCCC-hHHHHHHHHHHHHh-cCCHHHHHHHhcC
Q psy10061        218 IGRLAVALVLVQLARG----------DTVAAEKAFKEW-GNCCEA-PEVQTLEKLLQAFD-EEDPEGARQALND  278 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~g----------d~~~A~~~~~~~-~~~~~~-~e~~~l~~L~~a~~-~gd~~~~~~~~~~  278 (325)
                       +..| ..|++....|          -++++++++++. ..-.+. .-...+..+.+.++ .+..+...+.+.+
T Consensus       229 -aW~Y-~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~  300 (331)
T 3dss_A          229 -AWFY-HRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST  300 (331)
T ss_dssp             -HHHH-HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHH
T ss_pred             -HHHH-HHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence             1221 2333333333          367888888886 222222 11122223333443 5666666666655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.19  E-value=0.0041  Score=56.09  Aligned_cols=143  Identities=10%  Similarity=-0.021  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHH
Q psy10061         54 PDYDSAADDYSKAATCFKG--AKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCK----ELNDLTDVENLAKQAA  127 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~----~~g~~~eA~~~~~~A~  127 (325)
                      +.-..|-++|-++-.....  ..++.+|+.+|++|+++-...      +.++..++.+|.    ..+.....+.....+.
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            4446777888776544332  234578888888888776543      223333333332    1111122223333444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061        128 TLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  206 (325)
Q Consensus       128 ~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  206 (325)
                      ...........-+.++.-++.++...+ +++|+..+++|+.+-   .+    ...+.-+|.++...|++++|++.|.+|+
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            433333223334556777776665445 999999999999883   11    2466778999999999999999999998


Q ss_pred             HHH
Q psy10061        207 GYH  209 (325)
Q Consensus       207 ~~~  209 (325)
                      .+.
T Consensus       338 rL~  340 (372)
T 3ly7_A          338 NLR  340 (372)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.15  E-value=0.016  Score=52.21  Aligned_cols=143  Identities=11%  Similarity=-0.032  Sum_probs=88.8

Q ss_pred             hhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HhcCCHHHHHHHHH
Q psy10061          9 EGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF----KGAKSFQQCKEYLL   84 (325)
Q Consensus         9 ~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y----~~~g~~~~A~~~~~   84 (325)
                      +|-+++-+|...+..+  ....+.+|+.+|++|.++-        |+|..|..   .++.+|    ..............
T Consensus       195 ~Aydl~Lra~~~l~~~--~~~~~~~A~~l~e~Al~lD--------P~~a~A~A---~la~a~~~~~~~~~~~~~~~~~l~  261 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHG--DDKSLNRASELLGEIVQSS--------PEFTYARA---EKALVDIVRHSQHPLDEKQLAALN  261 (372)
T ss_dssp             GGHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHC--------TTCHHHHH---HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhC--------CCCHHHHH---HHHHHHHHHhccCCCchhhHHHHH
Confidence            3445555554433321  1245778888888887655        44433321   112222    12212223334444


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q psy10061         85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYS  163 (325)
Q Consensus        85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~  163 (325)
                      ++......+......+.++.-++.++...|++++|+.++++|+.+-   .+    +..+..+|.++...| +++|++.|.
T Consensus       262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~  334 (372)
T 3ly7_A          262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYL  334 (372)
T ss_dssp             HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4444333333334456678888888887899999999999999883   22    346788999999888 999999999


Q ss_pred             HHHHHHhc
Q psy10061        164 RAADVAHG  171 (325)
Q Consensus       164 ~Al~~~~~  171 (325)
                      +|+.+-..
T Consensus       335 ~AlrL~P~  342 (372)
T 3ly7_A          335 TAFNLRPG  342 (372)
T ss_dssp             HHHHHSCS
T ss_pred             HHHhcCCC
Confidence            99988543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.09  E-value=0.012  Score=46.15  Aligned_cols=80  Identities=15%  Similarity=0.052  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVK---EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      .++..++|+++++.+   +..+++.+++..+...    .+.....+++.+++.|...|||.+|.++++++ ..-++..++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            468889999999998   6669999999887742    23344568889999999999999999999998 444455667


Q ss_pred             HHHHHHHH
Q psy10061        255 QTLEKLLQ  262 (325)
Q Consensus       255 ~~l~~L~~  262 (325)
                      ..|..+++
T Consensus       108 ~~Lk~~ie  115 (152)
T 1pc2_A          108 KELERLID  115 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.08  E-value=0.024  Score=50.85  Aligned_cols=220  Identities=9%  Similarity=-0.041  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy10061         53 KPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLFL  131 (325)
Q Consensus        53 ~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~~  131 (325)
                      .++|..+...   ...+....+..++|++++.+++.+..+.      ..+++.-+.+...++ ++++++.++.+++....
T Consensus        50 ~~~y~~~~~~---~r~~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP  120 (349)
T 3q7a_A           50 SEEYKDAMDY---FRAIAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL  120 (349)
T ss_dssp             CHHHHHHHHH---HHHHHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence            4555544443   3344555666678888888887776543      235556667777788 59999999999875432


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHH--------HHHH
Q psy10061        132 EQGNREAASTVLEKGAKSLEEL---KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD--------KAAD  200 (325)
Q Consensus       132 ~~g~~~~aa~~l~~lg~~~~~~---~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~  200 (325)
                        .++    .+++.-+.++...   ++++++.++.+++++..+.      ..++...+.+....|.++        ++++
T Consensus       121 --Kny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe  188 (349)
T 3q7a_A          121 --KSY----QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN------YHTWAYLHWLYSHFSTLGRISEAQWGSELD  188 (349)
T ss_dssp             --CCH----HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             --CcH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence              222    2566666666654   4889999999998654332      357788888888888887        8999


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHhh-cccCCCh-HHHHHHHHHHHHhcCCHHH
Q psy10061        201 LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD-------TVAAEKAFKEW-GNCCEAP-EVQTLEKLLQAFDEEDPEG  271 (325)
Q Consensus       201 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd-------~~~A~~~~~~~-~~~~~~~-e~~~l~~L~~a~~~gd~~~  271 (325)
                      ++++++++...  +.    .++...+.+....++       ++++++++.++ ....... -..-+..|......+..+-
T Consensus       189 ~~~k~I~~dp~--N~----SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~  262 (349)
T 3q7a_A          189 WCNEMLRVDGR--NN----SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI  262 (349)
T ss_dssp             HHHHHHHHCTT--CH----HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHhCCC--CH----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence            99998885322  11    356677778777776       68888888886 2222121 2234445544443332222


Q ss_pred             HHHHhcC--hhhhcccHHHHHHhhcCCCCC
Q psy10061        272 ARQALND--PFIKHMDVEYSRLARDLPLPS  299 (325)
Q Consensus       272 ~~~~~~~--~~~~~l~~~~~~~~~~l~~~~  299 (325)
                      ....+-.  +.+....+.+...+.++...+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 3q7a_A          263 LPAILPYTASKLNPDIETVEAFGFPMPSDP  292 (349)
T ss_dssp             HHHHGGGTC--------------CCCCC-C
T ss_pred             cccccccccccccccchhHHHHHHHHHhcc
Confidence            2333322  222233356666777765543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.05  E-value=0.033  Score=49.61  Aligned_cols=155  Identities=8%  Similarity=-0.055  Sum_probs=100.2

Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10061         67 ATCFKGAK--SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELND-LTDVENLAKQAATLFLEQGNREAASTVL  143 (325)
Q Consensus        67 ~~~y~~~g--~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~-~~eA~~~~~~A~~~~~~~g~~~~aa~~l  143 (325)
                      +.+....+  ++++++.++.++++...+.      ..++..-+.+....|. ++++++++.++++..  -.++.    ++
T Consensus       115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S----AW  182 (331)
T 3dss_A          115 CWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS----SW  182 (331)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH----HH
T ss_pred             HHHHhccCcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH----HH
Confidence            44555666  4899999999998866543      2356666677777888 689999999998652  33433    45


Q ss_pred             HHHHHHHhcc--------------C-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc-----------CCHHH
Q psy10061        144 EKGAKSLEEL--------------K-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-----------KEFDK  197 (325)
Q Consensus       144 ~~lg~~~~~~--------------~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~  197 (325)
                      +..+.++...              + ++++++++.+++.+.+..      ..+++.+..++...           +.+++
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~  256 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQS  256 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence            5555554433              3 889999999999877654      23555454444444           45778


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHhh
Q psy10061        198 AADLIRQEIGYHQESEHLLAIGRLAVALVLVQL---ARGDTVAAEKAFKEW  245 (325)
Q Consensus       198 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~---~~gd~~~A~~~~~~~  245 (325)
                      +++.+.+.+++.+..  .    .++..++.+..   ..|...+....+.+.
T Consensus       257 el~~~~elle~~pd~--~----w~l~~~~~~~~~~~~~~~~~~~~~~l~~l  301 (331)
T 3dss_A          257 ELESCKELQELEPEN--K----WCLLTIILLMRALDPLLYEKETLQYFSTL  301 (331)
T ss_dssp             HHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccc--c----hHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            888888888875532  1    23333333322   246666777777765

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=96.52  E-value=0.38  Score=42.29  Aligned_cols=176  Identities=11%  Similarity=0.063  Sum_probs=120.9

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .|+|=||.++++--..-+.+     +++|++|++.....+..+...|++.-+.+.-.-.++++.+.+.... .....++.
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~-----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~   99 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVR-----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLV   99 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence            36888999999986554444     4899999999999999999999999999999889999998764432 33566777


Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccC-HHHHHHHHH------------HHHHHHhcC
Q psy10061        108 MMCKELNDLT-DVENLAKQAATLFLEQGN-REAASTVLEKGAKSLEELK-SDAALTLYS------------RAADVAHGE  172 (325)
Q Consensus       108 ~~y~~~g~~~-eA~~~~~~A~~~~~~~g~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------------~Al~~~~~~  172 (325)
                      .++.....-+ +=..+.++|+....+.|. ..+-...+..+|..|-..+ +.+|..+|-            --.+++...
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~  179 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV  179 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence            7776644222 224566777777766543 2333457888888888766 877888773            112333332


Q ss_pred             --CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        173 --DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       173 --~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                        +.+....-...+...-|...|+...|...++.-....
T Consensus       180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              4433333223444456778899999999988766654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.48  E-value=0.028  Score=39.99  Aligned_cols=61  Identities=10%  Similarity=-0.006  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKE---FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...+..+|.+++..++   .++|..++++++.+-+..      ..++..+|.+++..|+|.+|+.+|++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3577788888876665   799999999999863321      135567899999999999999999997

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.036  Score=51.29  Aligned_cols=111  Identities=11%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhH
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ...++..+|..|.+.|++++|.++|.++.+.....+..  .-.++..+...+...++..+..++.++..+....+++...
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k--id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK--IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            44567788888889999999999998877655444432  2334444444444556888888999988888777776666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      .......|.++...++|.+|..+|.+++..+..
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            556666777888888999999888877665433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.42  E-value=0.014  Score=41.64  Aligned_cols=65  Identities=18%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHh-cc-C--HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLE-EL-K--SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       141 ~~l~~lg~~~~-~~-~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..+..+|.++. .. +  .++|..++++|+.+-...      ..++..+|.++.+.|+|++|+.+++++++..+.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34556666653 22 2  799999999999976543      357778999999999999999999999876544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.41  E-value=0.046  Score=54.09  Aligned_cols=106  Identities=15%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcCCHHHHHHH
Q psy10061         69 CFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA------ATLFLEQGNREAASTV  142 (325)
Q Consensus        69 ~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A------~~~~~~~g~~~~aa~~  142 (325)
                      +...+|++++|.+.       .+.+.+.    ..+.++|..+.+.++++.|+.+|.++      ..++...|+...    
T Consensus       661 ~~l~~~~~~~A~~~-------~~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~----  725 (814)
T 3mkq_A          661 LALKVGQLTLARDL-------LTDESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG----  725 (814)
T ss_dssp             HHHHHTCHHHHHHH-------HTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----
T ss_pred             hhhhcCCHHHHHHH-------HHhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH----
Confidence            44567777776664       4445443    47889999999999999999999885      445666777653    


Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      +.+++.+....+ +..|..+|.+.       |+...       ...+|.+.+++++|+.+-+
T Consensus       726 ~~~~~~~a~~~~~~~~A~~~~~~~-------g~~~~-------a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          726 LVTLAKDAETTGKFNLAFNAYWIA-------GDIQG-------AKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-------TCHHH-------HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHc-------CCHHH-------HHHHHHHcCChHHHHHHHH
Confidence            556777777666 77777666542       44333       3445678888888887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.02  Score=53.09  Aligned_cols=108  Identities=9%  Similarity=-0.008  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHH
Q psy10061        139 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  217 (325)
Q Consensus       139 aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  217 (325)
                      ...++..+|..|...| ++.|+++|.++.+.....+.   ..+.+..+..++...++|..+..++.++..+....+++..
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            3456788999999887 99999999999887766543   3467778888999999999999999999888777777766


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccC
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEW-GNCC  249 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~  249 (325)
                      ...+....|.+++..++|..|...|.+. ..|.
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            7777788899999999999999999986 5554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.22  E-value=0.48  Score=46.69  Aligned_cols=107  Identities=10%  Similarity=-0.002  Sum_probs=60.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH------HHHHhcCCChhhHHHHH
Q psy10061        110 CKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRA------ADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       110 y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A------l~~~~~~~~~~~~~~~~  182 (325)
                      ....|++++|.+..       +...+.    ..+.++|..+...+ ++.|..+|.++      ..++...++.    +-+
T Consensus       662 ~l~~~~~~~A~~~~-------~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~----~~~  726 (814)
T 3mkq_A          662 ALKVGQLTLARDLL-------TDESAE----MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNK----EGL  726 (814)
T ss_dssp             HHHHTCHHHHHHHH-------TTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH----HHH
T ss_pred             hhhcCCHHHHHHHH-------HhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCH----HHH
Confidence            44557777775543       222332    25666666666554 66666666553      4444444443    234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++.+....|++..|...|.+.       +++.       ....+|...+++++|...-++.
T Consensus       727 ~~~~~~a~~~~~~~~A~~~~~~~-------g~~~-------~a~~~~~~~~~~~~A~~lA~~~  775 (814)
T 3mkq_A          727 VTLAKDAETTGKFNLAFNAYWIA-------GDIQ-------GAKDLLIKSQRFSEAAFLGSTY  775 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-------TCHH-------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCchHHHHHHHHHc-------CCHH-------HHHHHHHHcCChHHHHHHHHHh
Confidence            46677777777777776665431       2221       2344566677777777777775

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.13  E-value=0.18  Score=43.76  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        155 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-----KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       155 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      ...|...+++|+++-+.    .....++..+|.+|...     |+.++|..+|++++++.+..+     ...++..|..+
T Consensus       179 l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l  249 (301)
T 3u64_A          179 VHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHH
Confidence            67888999999988544    22346889999999995     999999999999999854211     12334567777


Q ss_pred             Hh-cCCHHHHHHHHHhh
Q psy10061        230 LA-RGDTVAAEKAFKEW  245 (325)
Q Consensus       230 ~~-~gd~~~A~~~~~~~  245 (325)
                      .. +||+..|..+++++
T Consensus       250 ~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          250 CIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             TTTTTCHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66 59999999999997

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.0094  Score=55.99  Aligned_cols=200  Identities=14%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             hcCCHHHHHHHHHHHH--HHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHHHHH---cCCH
Q psy10061         72 GAKSFQQCKEYLLKAA--NCYETNKS---AYHAAKHLEQAIMMCKELNDLTDVE-------NLAKQAATLFLE---QGNR  136 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~--~~~~~~~~---~~~aa~~~~~~~~~y~~~g~~~eA~-------~~~~~A~~~~~~---~g~~  136 (325)
                      ..++++++.++-....  ......+.   ..-++++|.=.+.+|...|+..+..       ..-...+..++.   ..|.
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            3456777666655443  12221111   1224555555555666656554322       111222333443   3567


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-  213 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-  213 (325)
                      .+.+..++.+-..|...+ |++|..+..++.  +... ......+..+..+|.++.-+++|.+|.+++..|+..++... 
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            788889998888888877 999999999884  4433 23334456677899999999999999999999987655332 


Q ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCCh-HHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        214 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP-EVQTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       214 ~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~-e~~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      .......++--+..|.+-+|+.+. ...|.+.    ... ....-..|..|+..||...|...+.+
T Consensus       306 a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~----~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~  366 (523)
T 4b4t_S          306 SLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQS----NMQKSLLPYYHLTKAVKLGDLKKFTSTITK  366 (523)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTT----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhHHhhcCCCCC-hHHhhch----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            112222344456667666788664 2223222    111 12233468889999999999999875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.45  E-value=0.24  Score=38.68  Aligned_cols=67  Identities=18%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      ..+..++|..+...+    .++++.++++.++..    .+....+++.++|..|.++|+|++|..+++++|++-+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            346777888777654    679999999987742    2334468999999999999999999999999999744

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.32  E-value=0.15  Score=38.46  Aligned_cols=81  Identities=14%  Similarity=0.025  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVKEFDK---AADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      ..+..++|+.++...+...   ++.+++..+..    +.+...-.+++.+++.++..|+|.+|..+++.. ..-++..++
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            3677899999999887776   67666654432    224345567888999999999999999999998 445566778


Q ss_pred             HHHHHHHHH
Q psy10061        255 QTLEKLLQA  263 (325)
Q Consensus       255 ~~l~~L~~a  263 (325)
                      ..|..+++-
T Consensus       111 ~~Lk~~i~~  119 (126)
T 1nzn_A          111 KELERLIDK  119 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.28  E-value=1  Score=34.04  Aligned_cols=80  Identities=9%  Similarity=0.028  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      ..+..++++.+++..+..   +++.+++..+.   .  ++.....+++-+++.+...|+|..|..+.+.. ..-.+..++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---H--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            467889999999887554   57777766543   2  23234467788999999999999999999998 555677788


Q ss_pred             HHHHHHHHH
Q psy10061        255 QTLEKLLQA  263 (325)
Q Consensus       255 ~~l~~L~~a  263 (325)
                      ..|..+++-
T Consensus       115 ~~Lk~~Ie~  123 (134)
T 3o48_A          115 GALKSMVED  123 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.23  E-value=1.5  Score=35.02  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=17.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhc
Q psy10061        224 ALVLVQLARGDTVAAEKAFKEWG  246 (325)
Q Consensus       224 ~lg~~~~~~gd~~~A~~~~~~~~  246 (325)
                      ....+++..||++++.+.|.+..
T Consensus        94 ~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           94 SMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHCC
Confidence            34567778888888888888763

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=94.02  E-value=1.9  Score=39.65  Aligned_cols=126  Identities=10%  Similarity=-0.026  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK--SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~--~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      +..++.+.|...++.+-=+.|+.+..++..+.+++.+||.++...+.++....  .-.++..   . .-+...-......
T Consensus        17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~---~-~~~~~qt~~~~ke   92 (436)
T 2yin_A           17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQ---T-GQQHPQTHRQLKE   92 (436)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCccccc---C-CCCccccHHHHHH
Confidence            56688888998899999999999999999999999999999988887766543  1111100   0 0011100011112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHh
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~  231 (325)
                      ..+..+...+.+.+.|+.|+.+++..+..++.. -++...+.++..++.+|-.
T Consensus        93 ~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~  145 (436)
T 2yin_A           93 TLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES  145 (436)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777788888889999999999999999875 6777777777777777653

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=93.01  E-value=0.96  Score=41.63  Aligned_cols=94  Identities=6%  Similarity=-0.024  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-------c--C----------------------------ChHHHH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYET-------N--K----------------------------SAYHAA  100 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~-------~--~----------------------------~~~~aa  100 (325)
                      --...+++++..+...++|.+|+-++...+.+.-.       .  +                            ...+..
T Consensus         9 l~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~   88 (428)
T 2wm9_A            9 LRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLM   88 (428)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHH
Confidence            33456667777777777777777777644432221       0  0                            112223


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      ..+..++..+.+.+.|+.|+..|+..+.+|....|+.+.+.++..++.+|.
T Consensus        89 ~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~  139 (428)
T 2wm9_A           89 ELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYS  139 (428)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            356777777777778888888888888888888888888888877777665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.97  E-value=5.5  Score=37.14  Aligned_cols=186  Identities=10%  Similarity=0.008  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQ-------  133 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~-------  133 (325)
                      +.+...+......|+.+.|...|.+|+.. ......+      ...+.. .+.   ++.   ++...+.+...       
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~------~~y~~~-~e~---~~~---~~~l~~~~~~~~~~~~~~  279 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS------LYYGLV-MDE---EAV---YGDLKRKYSMGEAESAEK  279 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH------HHHHHH-TTC---THH---HHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH------HHHHhh-cch---hHH---HHHHHHHHHhhccchhhh
Confidence            34445556667789999999999999988 4322111      111111 011   111   22221111000       


Q ss_pred             CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q psy10061        134 GNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       134 g~~~~aa~~l~~lg~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~  211 (325)
                      .........+...+...... +.+.|...|.+| . ..  +.   ...++...+.+-...+ +.+.|..+|+.++..++.
T Consensus       280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~--~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE--GV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS--CC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC--CC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence            01122234555556555444 489999999998 2 11  11   1235555566555555 699999999999886533


Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        212 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       212 ~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .  +    ..+...+......|+.+.|...|+++..   +  ..+.....+-- ..||.+.++..+.+
T Consensus       353 ~--~----~~~~~yid~e~~~~~~~~aR~l~er~~k---~--~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          353 S--T----LLKEEFFLFLLRIGDEENARALFKRLEK---T--SRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             C--H----HHHHHHHHHHHHHTCHHHHHHHHHHSCC---B--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             C--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHH---H--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            2  1    1223344555678999999999999721   1  12222222221 24677766665544

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.77  E-value=1.9  Score=39.15  Aligned_cols=172  Identities=12%  Similarity=0.062  Sum_probs=99.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQ-----------GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN  174 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~-----------g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~  174 (325)
                      ..+.....++++++++.++........           ........+...++..|...+ .++|..+++++-......++
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            334455677888888777654332211           112333445566677776665 88999999888877766553


Q ss_pred             h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh-h-ccc
Q psy10061        175 Y--KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKE-W-GNC  248 (325)
Q Consensus       175 ~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~-~-~~~  248 (325)
                      .  .-....+.-.+..|...++|..+...+-..+..+....  .........+.++.+.+...+...=-+.+.. . ...
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L  242 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETI  242 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSS
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHh
Confidence            2  33455666778888888999988777776666544322  2222222333444444433211111111111 1 222


Q ss_pred             CCChHHHHHHHHHHHHhcCCHHHHHHHhcC
Q psy10061        249 CEAPEVQTLEKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       249 ~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ....+...+.+|..++..||...+...++.
T Consensus       243 ~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~  272 (393)
T 4b4t_O          243 VNDSNYDWLFQLLNALTVGDFDKFDSLIKV  272 (393)
T ss_dssp             CSSSSTTHHHHHHHHHHHTCHHHHHHHCCH
T ss_pred             hcCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            333444557788999999999999887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.63  E-value=1.1  Score=34.76  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCC
Q psy10061        117 TDVENLAKQAATLFL--EQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  194 (325)
Q Consensus       117 ~eA~~~~~~A~~~~~--~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  194 (325)
                      ++-++.|++|+....  +.+....=+..+.+.+...+..+.+.|...|+.++.+   ....   +.++...+..-+++|+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRqgn  109 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQGN  109 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHccc
Confidence            556667777765432  2344555666677777665445699999999999987   2223   6788889999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy10061        195 FDKAADLIRQEIGYH  209 (325)
Q Consensus       195 ~~~A~~~~~~al~~~  209 (325)
                      ..+|...+.+++.+.
T Consensus       110 l~kARkILg~AiG~~  124 (161)
T 4h7y_A          110 VKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999998864

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.54  E-value=2.8  Score=33.40  Aligned_cols=45  Identities=9%  Similarity=-0.027  Sum_probs=30.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQA  126 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A  126 (325)
                      ..+|+++.|.+....       +++    -..+.++|......|+++-|..+|+++
T Consensus        16 L~lg~l~~A~e~a~~-------l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKK-------LND----SITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHH-------HCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHH-------hCC----HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            356777777665432       232    346888888888888888888776654

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=92.36  E-value=1.8  Score=39.92  Aligned_cols=99  Identities=14%  Similarity=-0.004  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----------------h-HHHHHHHHHHHHHHHHcCCH
Q psy10061         54 PDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS----------------A-YHAAKHLEQAIMMCKELNDL  116 (325)
Q Consensus        54 ~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~----------------~-~~aa~~~~~~~~~y~~~g~~  116 (325)
                      +..+--....+++++.+...++|.+|+-++...++++.-..+                . ...-..|..++..+.+-+.|
T Consensus        29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~  108 (436)
T 2yin_A           29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW  108 (436)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Confidence            455666777888888888888888888887554443321010                0 01123567777778787888


Q ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Q psy10061        117 TDVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEE  152 (325)
Q Consensus       117 ~eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~  152 (325)
                      +.|+.+|+..+..|... -|+...+.++..++.+|..
T Consensus       109 E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~  145 (436)
T 2yin_A          109 EEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES  145 (436)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888885 8888888888888887763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.29  E-value=3  Score=31.93  Aligned_cols=79  Identities=9%  Similarity=0.029  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVKEFD---KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      ..+..++++.+++..+..   +++.+++..+.   .  ++...-.+++-+++.+.+.|||.+|..+.+.. ..-.+..++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            467889999999988665   56767666544   2  22223357778999999999999999999998 555566788


Q ss_pred             HHHHHHHH
Q psy10061        255 QTLEKLLQ  262 (325)
Q Consensus       255 ~~l~~L~~  262 (325)
                      ..|..+++
T Consensus       114 ~~Lk~~Ie  121 (144)
T 1y8m_A          114 GALKSMVE  121 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776655

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.10  E-value=6  Score=34.94  Aligned_cols=229  Identities=10%  Similarity=0.042  Sum_probs=139.0

Q ss_pred             cccH---HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         28 DRKK---EEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        28 ~~~~---~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      .|+|   =||.++++--..-+-+     +++|++|+++...-+..+...|++.-+.+.-.-.++++.+.+-... .....
T Consensus        25 ~G~y~~~YEAHQ~~RTi~~Ry~~-----~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~   98 (336)
T 3lpz_A           25 EGQPEEQYEAAQETRLVAARYSK-----QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRG   98 (336)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence            3578   8899999875554434     4899999999999999999999999999999999999987653322 24667


Q ss_pred             HHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccC-HHHHHHHHH------------HHHHHH
Q psy10061        105 QAIMMCKELNDLT-DVENLAKQAATLFLEQGN-REAASTVLEKGAKSLEELK-SDAALTLYS------------RAADVA  169 (325)
Q Consensus       105 ~~~~~y~~~g~~~-eA~~~~~~A~~~~~~~g~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~------------~Al~~~  169 (325)
                      ++..++.....-+ +=..+..+|+....+.|. ..+--..+..+|.+|-..+ +.+|..++-            --.+++
T Consensus        99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~  178 (336)
T 3lpz_A           99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY  178 (336)
T ss_dssp             HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            7777877665322 224456666666555432 2222346777888887765 777777762            112333


Q ss_pred             hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-----------------H-HHHHHHHHHHHHHHHh
Q psy10061        170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-----------------L-LAIGRLAVALVLVQLA  231 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~-~~~~~~~~~lg~~~~~  231 (325)
                      ...+ .....-...+.-.-|...++...|...+..-+....+...                 + ... --+..+.++-+.
T Consensus       179 ~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PL-LNFl~lLllt~q  256 (336)
T 3lpz_A          179 KQDE-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPL-LNFISMLLLSVQ  256 (336)
T ss_dssp             HTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHH-HHHHHHHHHHHH
T ss_pred             HhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCch-HHHHHHHHHHHh
Confidence            3333 3333333344555688889999998877666654422100                 0 111 123344445556


Q ss_pred             cCCHHHHHHHHHhh-cccC-CC-hHHHHHHHHHHHH
Q psy10061        232 RGDTVAAEKAFKEW-GNCC-EA-PEVQTLEKLLQAF  264 (325)
Q Consensus       232 ~gd~~~A~~~~~~~-~~~~-~~-~e~~~l~~L~~a~  264 (325)
                      .+..+.-....+++ +... .. .=...|..|++.|
T Consensus       257 ~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y  292 (336)
T 3lpz_A          257 KGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY  292 (336)
T ss_dssp             SCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            66655444444444 2221 11 1135677888876

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=92.00  E-value=0.26  Score=40.49  Aligned_cols=92  Identities=14%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHHH
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQTL  257 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~l  257 (325)
                      ...-+.-+|.++...++|.+|.+.+.+|+..+.+.+.. ....++.-+..+.+.+|+++. .+.+++++.    .   ..
T Consensus        13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~-~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~~----~---~y   83 (203)
T 3t5x_A           13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK-NKRMILIYLLPVKMLLGHMPT-VELLKKYHL----M---QF   83 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHTTCEEC-HHHHHHTTC----G---GG
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH-HHHHHHHHHHHHHHHcCCCCC-HHHhhhCch----h---HH
Confidence            34456789999999999999999999999887654422 233456667777888888654 344455421    1   24


Q ss_pred             HHHHHHHhcCCHHHHHHHhcC
Q psy10061        258 EKLLQAFDEEDPEGARQALND  278 (325)
Q Consensus       258 ~~L~~a~~~gd~~~~~~~~~~  278 (325)
                      ..|..|+..||...|..++++
T Consensus        84 ~~L~~Avr~Gdl~~f~~~l~~  104 (203)
T 3t5x_A           84 AEVTRAVSEGNLLLLHEALAK  104 (203)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHH
Confidence            478899999999999999876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.16  E-value=8.6  Score=33.28  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-h-c
Q psy10061        194 EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR-----GDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-D-E  266 (325)
Q Consensus       194 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-----gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~-~  266 (325)
                      ...+|...+++++++-    .....+.++..+|.+|...     ||.++|..+|+++-...+........-.++.+ . .
T Consensus       178 ~l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          178 TVHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred             hHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence            3457777788887763    2334556788899999995     99999999999982222211122344456654 4 5


Q ss_pred             CCHHHHHHHhcC
Q psy10061        267 EDPEGARQALND  278 (325)
Q Consensus       267 gd~~~~~~~~~~  278 (325)
                      ||.+.+...+++
T Consensus       254 gd~~~a~~~L~k  265 (301)
T 3u64_A          254 NNRAGFDEALDR  265 (301)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999988887

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.92  E-value=1.6  Score=40.90  Aligned_cols=140  Identities=6%  Similarity=-0.036  Sum_probs=88.4

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061         94 KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE-QGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus        94 ~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~-~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      .|....+..++.+...|...+.++.|..+..++.  +-. .....+.++.+.-+|.++.-.. |.+|.+++..|+.....
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            3566788899999999999999999999988875  322 2455677899999999998775 99999999999876544


Q ss_pred             CCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        172 EDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       172 ~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ... ......++..+..+-.-+|+.++-- .|       ++-...... ..|..++.++ ..||...-...+++.
T Consensus       303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-------~q~~l~~~L-~pY~~Lv~Av-r~GdL~~F~~~L~~h  367 (523)
T 4b4t_S          303 NSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-------HQSNMQKSL-LPYYHLTKAV-KLGDLKKFTSTITKY  367 (523)
T ss_dssp             SSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-------TTTSCHHHH-HHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred             chhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-------hchhHHHHH-HHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence            321 1222334434444444467766411 11       111111111 1234444443 557776666666554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.23  E-value=1.3  Score=41.59  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  207 (325)
Q Consensus       141 ~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  207 (325)
                      .++..+|.+..-.. ++.|..+|.+|+.+.+..|      ..++.+|.+....|+.-+|+-+|.+++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            46778898887665 9999999999999998886      4788999999999999999999988875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.19  E-value=2.9  Score=41.29  Aligned_cols=63  Identities=8%  Similarity=0.034  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccc
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC  248 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~  248 (325)
                      ..+.--+..+...|+|+-|+.+.++++...+..      -..|..|+.||..+||++.|+-.+..+|.|
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~l~d~e~ALLtLNScPm~  400 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDS------FESWYNLARCHIKKEEYEKALFAINSMPRL  400 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence            355566777888999999999999998875431      246778999999999999999999998655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.16  E-value=4  Score=30.53  Aligned_cols=66  Identities=17%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       141 ~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      .+..++|..+....    ..+++.+++..+.   . +.+....+++..+|..++++|+|++|..+++..|++-+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            45667777777664    4457777766543   2 33445668999999999999999999999999988743

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.42  E-value=1.7  Score=30.39  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=31.0

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      .+...|..+..-++.+...|+|++||+++++|+.++.+
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            35566788888889999999999999999999876554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.89  E-value=3.3  Score=37.38  Aligned_cols=60  Identities=10%  Similarity=-0.067  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++..++..+...|++.+|+..+.+.+...     +... .++..+..++...|+..+|+..|+++
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEH-----PYRE-PLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456678888999999999999998887652     2222 35667889999999999999999997

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=86.33  E-value=21  Score=33.13  Aligned_cols=173  Identities=6%  Similarity=-0.024  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHH
Q psy10061         77 QQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSD  156 (325)
Q Consensus        77 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~  156 (325)
                      ......|++++......      ...+...+..+...|+.++|...|++|+.. ..  +..    .+...+...+ ..  
T Consensus       196 ~Rv~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~--~~~----l~~~y~~~~e-~~--  259 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD--GMF----LSLYYGLVMD-EE--  259 (493)
T ss_dssp             HHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC--SSH----HHHHHHHHTT-CT--
T ss_pred             HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC--cHH----HHHHHHhhcc-hh--
Confidence            34556777776654322      456777777888899999999999999987 22  211    1111222211 11  


Q ss_pred             HHHHHHHHHHHHH---hc----CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q psy10061        157 AALTLYSRAADVA---HG----EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  229 (325)
Q Consensus       157 ~A~~~y~~Al~~~---~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  229 (325)
                      +.   +++..+.+   ..    .........++...+....+.+..+.|...|+++ . ..  +.   ..+.+...+.+-
T Consensus       260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~--~~---~~~v~i~~A~lE  329 (493)
T 2uy1_A          260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE--GV---GPHVFIYCAFIE  329 (493)
T ss_dssp             HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS--CC---CHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC--CC---ChHHHHHHHHHH
Confidence            11   11111111   10    0012223456777888888889999999999998 2 11  11   112444444444


Q ss_pred             HhcC-CHHHHHHHHHhh-cccCCChHHHHHHHHHHH-HhcCCHHHHHHHhc
Q psy10061        230 LARG-DTVAAEKAFKEW-GNCCEAPEVQTLEKLLQA-FDEEDPEGARQALN  277 (325)
Q Consensus       230 ~~~g-d~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a-~~~gd~~~~~~~~~  277 (325)
                      +..+ |++.|...|+.+ ..|.+..+.- + ..++- ...||.+.++..+.
T Consensus       330 ~~~~~d~~~ar~ife~al~~~~~~~~~~-~-~yid~e~~~~~~~~aR~l~e  378 (493)
T 2uy1_A          330 YYATGSRATPYNIFSSGLLKHPDSTLLK-E-EFFLFLLRIGDEENARALFK  378 (493)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHCTTCHHHH-H-HHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHCCCCHHHH-H-HHHHHHHHcCCHHHHHHHHH
Confidence            4444 799999999998 5566555542 2 23332 24788887775543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.13  E-value=5  Score=30.30  Aligned_cols=65  Identities=9%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        141 TVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       141 ~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      .+..+.+..+....    ...++..++..+..   .  +....+++..++..+.++|+|++|..+.+..|++-+
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP  109 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  109 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            45556665555443    66888888776542   2  334568999999999999999999999998887643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.88  E-value=4.5  Score=30.95  Aligned_cols=64  Identities=9%  Similarity=0.019  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      ..+..+.+..+....    ..+++.+++..+..   .  +....+++..++..+.++|+|.+|..+.+..|++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---C--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            445666666666553    56788888776652   2  2234578999999999999999999999988876

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=84.67  E-value=2.6  Score=39.55  Aligned_cols=61  Identities=11%  Similarity=0.036  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAA  127 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~  127 (325)
                      .+...+|++.+....+..|..+|.+|..+....|      ..|+.+|.++...|+.-+|+-+|.+++
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4666778888888888889999999888888776      477888888888888888888888876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=84.62  E-value=5.5  Score=40.74  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--cccCCChHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW--GNCCEAPEVQT  256 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~--~~~~~~~e~~~  256 (325)
                      -.+|+.+-..|++.|+.++|..+|.+.......--.+..  .+|+.+...|...|+.++|.+.|++.  .++..  ..-+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv--vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvT  202 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL--DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHH
Confidence            457888889999999999999998776543221111222  36788888889999999999999986  33332  2233


Q ss_pred             HHHHHHHH-hcCC-HHHHHHHhc
Q psy10061        257 LEKLLQAF-DEED-PEGARQALN  277 (325)
Q Consensus       257 l~~L~~a~-~~gd-~~~~~~~~~  277 (325)
                      ...|++.+ ..|. .+.+...++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~  225 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLE  225 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHH
Confidence            44455554 4554 455555554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.54  E-value=7.3  Score=35.08  Aligned_cols=62  Identities=8%  Similarity=-0.127  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      +...++..+...|++.+++..+..++...--....      +..+-..+...+ ..+|+..|++.-..+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~------~~~lm~al~~~Gr~~~Al~~y~~~r~~L  235 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPL------WTQLITAYYLSDRQSDALGAYRRVKTTL  235 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH------HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555666666677777766666665544333221      222333333333 555555555555543

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=83.11  E-value=10  Score=34.73  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10061        160 TLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ  204 (325)
Q Consensus       160 ~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  204 (325)
                      +.++++++.+.+.+.+..+..++..+...|-...+|.+-..++.+
T Consensus        89 ~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~  133 (428)
T 2wm9_A           89 ELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDT  133 (428)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            345555555555555555555555555555555555444444333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.52  E-value=3.4  Score=42.95  Aligned_cols=99  Identities=12%  Similarity=0.031  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLE-----------------QGNREAASTVLEKGAKSLEELK-SDAALTLYSRA  165 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~-----------------~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~A  165 (325)
                      .-+|.+|...|++++|..++++|..-...                 ..........|..+..+++..+ ++.++++.+.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55799999999999999999987422111                 1111122357888888999888 99999999999


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10061        166 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR  203 (325)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  203 (325)
                      ++.... ++.......+.++=..+...|+|++|...+.
T Consensus       926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            986543 3333334567778888999999999977663

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.03  E-value=3.5  Score=28.35  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=22.0

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF   70 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y   70 (325)
                      ++...++|+.+..+|.+.-+.      ++|++|..+|..+...+
T Consensus         6 ~~~~l~~A~~l~~~Av~~D~~------g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            6 TGDFLTKGIELVQKAIDLDTA------TQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence            334566666666666554333      56666666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-15

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 1e-15
 Identities = 48/260 (18%), Positives = 98/260 (37%), Gaps = 14/260 (5%)

Query: 33  EGMEYVKSAEKHLKTSL-------LKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLK 85
           + +E +K AEK    S              ++ AAD   +AAT ++  K      +  LK
Sbjct: 3   DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK 62

Query: 86  AANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEK 145
           AA+  +   +   A     +A    K   +  +  +  + A  +F  +G     +    +
Sbjct: 63  AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122

Query: 146 GAKSLEELKS--DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIR 203
             + LE        A+  Y  A +    + +   + +   + A +     ++ +A+D+  
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182

Query: 204 QEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC----EAPEVQTLE 258
           + I     +     ++    +   L QLA  D VAA +  +E  +      ++ E   L+
Sbjct: 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242

Query: 259 KLLQAFDEEDPEGARQALND 278
            L+ A +E D E   +   +
Sbjct: 243 SLIDAVNEGDSEQLSEHCKE 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	100.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.25
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.14
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.08
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.06
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.03
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.97
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.96
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.92
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.7
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.33
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.21
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.27
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.04
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.44
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.97
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.89
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.6

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=237.47  Aligned_cols=271  Identities=18%  Similarity=0.190  Sum_probs=228.8

Q ss_pred             hhhhhHHHHHHhhchhc--cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLS--TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLL   84 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~--~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~   84 (325)
                      ++|++++|++|||.+++  ++.+                .+.   ..++++|++|+++|.++|++|+.+++|++|+++|.
T Consensus         1 ~~~~~~~l~~aek~~~~~~~~~~----------------~~~---~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~   61 (290)
T d1qqea_           1 ISDPVELLKRAEKKGVPSSGFMK----------------LFS---GSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFL   61 (290)
T ss_dssp             CCCHHHHHHHHHHHSSCCCTHHH----------------HHS---CCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCcchhHHH----------------Hhc---CCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            36777777777777762  1110                000   11246788999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cC-HHHHHHHH
Q psy10061         85 KAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEE-LK-SDAALTLY  162 (325)
Q Consensus        85 ~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~-~~-~~~A~~~y  162 (325)
                      ++++++.+.+++..++.+|.++|.+|..+|++++|+.+|+++++++...|+...++.++.++|.+|.. .+ +++|+.+|
T Consensus        62 kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  141 (290)
T d1qqea_          62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY  141 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999975 35 99999999


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy10061        163 SRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKA  241 (325)
Q Consensus       163 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~~~~~gd~~~A~~~  241 (325)
                      ++|++++...++......++.++|.+|..+|+|++|+.+|++++.+.+..+ ........+.++|.+++..||+..|...
T Consensus       142 ~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~  221 (290)
T d1qqea_         142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART  221 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999998888889999999999999999999999999998766554 2344556778999999999999999999


Q ss_pred             HHhh----cccCCChHHHHHHHHHHHHhcCCHHHHHHHhcC-hhhhcccHHHHHHhhcCC
Q psy10061        242 FKEW----GNCCEAPEVQTLEKLLQAFDEEDPEGARQALND-PFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       242 ~~~~----~~~~~~~e~~~l~~L~~a~~~gd~~~~~~~~~~-~~~~~l~~~~~~~~~~l~  296 (325)
                      ++++    +.|..+++..++.+|+.++..+|.+.+.+++.. ..+..+|++...++.+++
T Consensus       222 ~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k  281 (290)
T d1qqea_         222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK  281 (290)
T ss_dssp             HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            9997    677888899999999999999999999999887 667788998888776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=6.5e-22  Score=173.98  Aligned_cols=247  Identities=13%  Similarity=0.084  Sum_probs=191.3

Q ss_pred             hhhhhHHHHHHhhchhccccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10061          7 KEEGMEYVKSAEKHSLSTMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKA   86 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a   86 (325)
                      .++|.+++.+|=    ..+...++|++|++.|.+|.++..+     .++...++.+|.++|.+|...|++++|+.+|.++
T Consensus        33 ~~~Aa~~y~~aa----~~y~~~~~~~~A~~~y~kA~~~~~~-----~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          33 FEEAADLCVQAA----TIYRLRKELNLAGDSFLKAADYQKK-----AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHH----HHHHHTTCTHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHCcCHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            455555555541    2344445788888888888887766     4777888899999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q psy10061         87 ANCYETNKSAYHAAKHLEQAIMMCKE-LNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSR  164 (325)
Q Consensus        87 ~~~~~~~~~~~~aa~~~~~~~~~y~~-~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~  164 (325)
                      ++++...++...++.++.++|.+|.. .|++++|+.+|++|++++...++....+.++.++|.++...+ +++|+.+|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence            99999999999999999999999865 699999999999999999999999999999999999999988 9999999999


Q ss_pred             HHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Q psy10061        165 AADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA--RGDTVAAEKA  241 (325)
Q Consensus       165 Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~--~gd~~~A~~~  241 (325)
                      ++.+...... .......+..+|.++...|++..|...+++++++.+...+. .....+..++.++..  .+.+.+|+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s-re~~~l~~l~~a~~~~d~e~~~eai~~  262 (290)
T d1qqea_         184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEGDSEQLSEHCKE  262 (290)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred             HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch-HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9998877643 34556678899999999999999999999998876554321 122345566666554  3458888888


Q ss_pred             HHhhcccCCChHHHHHHHHHHHH
Q psy10061        242 FKEWGNCCEAPEVQTLEKLLQAF  264 (325)
Q Consensus       242 ~~~~~~~~~~~e~~~l~~L~~a~  264 (325)
                      |.++..++ .....+|..+...+
T Consensus       263 y~~~~~lD-~~~~~~L~~~k~~l  284 (290)
T d1qqea_         263 FDNFMRLD-KWKITILNKIKESI  284 (290)
T ss_dssp             HTTSSCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHhhcC-HHHHHHHHHHHHhh
Confidence            87763332 12234555555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.4e-14  Score=127.11  Aligned_cols=247  Identities=13%  Similarity=-0.005  Sum_probs=188.2

Q ss_pred             ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy10061         25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLE  104 (325)
Q Consensus        25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~  104 (325)
                      ....|++++|++++++|+.....      .+...-+..+..+|.+|...|++++|...|.+++.+....++....+.++.
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPP------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcC------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            34557999999999999987754      344555678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGN--REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY  181 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~--~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~  181 (325)
                      +++.++...|++.++...+.+++.+....+.  ....+..+..+|.++...+ ++.+..++.+++......+.... ..+
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~  174 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQC  174 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH-HHH
Confidence            9999999999999999999999999887643  3455667888899988877 99999999999998877665443 456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-ccc--CCChHHHHH
Q psy10061        182 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNC--CEAPEVQTL  257 (325)
Q Consensus       182 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~--~~~~e~~~l  257 (325)
                      +...+.++...+++.++...+.++..+....+. ......++..++.++...|+++.|...++++ ...  .+.......
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            778888888888888888888888887766543 3334445566666777777777777777765 111  112223333


Q ss_pred             HHHHHHH-hcCCHHHHHHHhcC
Q psy10061        258 EKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       258 ~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      ..|+.++ ..|+.+.+...+.+
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~  276 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEE  276 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4455554 45666665555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=9.2e-14  Score=121.80  Aligned_cols=264  Identities=11%  Similarity=0.021  Sum_probs=162.1

Q ss_pred             hhhhhhHHHHHHhhchhc---------------cccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061          6 KKEEGMEYVKSAEKHSLS---------------TMTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF   70 (325)
Q Consensus         6 ~~~~~~~~~~~ae~~~~~---------------~~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y   70 (325)
                      ++.+|.+++.+|-.....               .+...|++++|+.+|.++.+....     .++.......+...+.++
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-----HDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHH
Confidence            467888888887554321               123347999999999999998876     367777888888889999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         71 KGAKSFQQCKEYLLKAANCYETNK--SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAK  148 (325)
Q Consensus        71 ~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~  148 (325)
                      ...|++..+...+.+++.+.....  .....+..+..+|.+|...|+++.+..++.++.......+.... +..+...+.
T Consensus       102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  180 (366)
T d1hz4a_         102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQ  180 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH-HHHHHHHHH
Confidence            999999999999999988887653  33456677888888999999999999888888877666554433 344455555


Q ss_pred             HHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        149 SLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       149 ~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      ++...+ +.++...+.++..++...+. ......++..++.++...|++++|..++++++.+......  .....+.++|
T Consensus       181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~la  258 (366)
T d1hz4a_         181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--FLQGQWRNIA  258 (366)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG--GGHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch--HHHHHHHHHH
Confidence            555444 66666666666666655433 2223334444555555555555555555544433221111  1122334455


Q ss_pred             HHHHhcCCHHHHHHHHHhh----ccc-CCChHHHHHHHHHHHH-hcCCHHHHHHHhc
Q psy10061        227 LVQLARGDTVAAEKAFKEW----GNC-CEAPEVQTLEKLLQAF-DEEDPEGARQALN  277 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~----~~~-~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~  277 (325)
                      .+++..|++++|...++++    ... .......++..++.++ ..|+.+.+...++
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5555555555555555553    111 1122333444445544 3555555555444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-14  Score=127.05  Aligned_cols=224  Identities=9%  Similarity=-0.037  Sum_probs=149.3

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQA  106 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~  106 (325)
                      ..|++++|+.+|+++.+..        |+.   .+.|..+|.+|...|++++|..+|.+++++....      ...+.++
T Consensus        31 ~~g~~~~A~~~~~~al~~~--------P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l   93 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQD--------PKH---MEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALMAL   93 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSC--------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--------CCC---HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------ccccccc
Confidence            3468999999999987654        222   4568888999999999999999999999875432      4678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH-------HHHHhccCHHHHHHHHHHHHHHHhcCCChh
Q psy10061        107 IMMCKELNDLTDVENLAKQAATLFLEQGN---REAASTVLEKG-------AKSLEELKSDAALTLYSRAADVAHGEDNYK  176 (325)
Q Consensus       107 ~~~y~~~g~~~eA~~~~~~A~~~~~~~g~---~~~aa~~l~~l-------g~~~~~~~~~~A~~~y~~Al~~~~~~~~~~  176 (325)
                      |.+|...|++++|+.++++++.+......   ..........+       +.......+.+|+..|.+++.+.....+  
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~--  171 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID--  171 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC--
T ss_pred             cccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc--
Confidence            99999999999999999998865332111   00001111111       1122222367777777777766543322  


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCChHHHH
Q psy10061        177 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEVQT  256 (325)
Q Consensus       177 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~~~~~~~~e~~~  256 (325)
                        ..++..+|.++..+|++++|+.+|++++.+.+.      ...++..+|.++...|++++|.++|+++-... .....+
T Consensus       172 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a  242 (323)
T d1fcha_         172 --PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS  242 (323)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             --cccchhhHHHHHHHHHHhhhhcccccccccccc------cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHH
Confidence              346667788888888888888888877765322      12456677888888888888888888762111 112445


Q ss_pred             HHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        257 LEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       257 l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +..|+.++ ..|+.+.+...+.+
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            66777776 57777777777655

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-14  Score=128.99  Aligned_cols=181  Identities=16%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10061         62 DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAST  141 (325)
Q Consensus        62 ~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~  141 (325)
                      .+...|.++...|++++|...|.++..+....      ...+..+|.+|...|++++|+.+|++++++...  +    ..
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~  272 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--F----PD  272 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--C----HH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHhhhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HH
Confidence            34455566666666666666666655443221      334555666666666666666666666544211  1    23


Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      ++..+|.++...+ +++|+..|++++......      ..++..+|.++...|++++|+.+|++++++.+.      ...
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~  340 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAA  340 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT------CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc------chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH
Confidence            4555666666555 666666666665543321      234555666666666666666666666554321      123


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCC
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEED  268 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd  268 (325)
                      ++.++|.++...|++++|...|+++ ....+.  ..+...|+.++ ..||
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~--~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Confidence            4555666666666666666666665 221111  23455555555 3443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-13  Score=118.46  Aligned_cols=164  Identities=13%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCHHHHHHHH--------------HHHHHHHhc
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATL--------------FLEQGNREAASTVL--------------EKGAKSLEE  152 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~--------------~~~~g~~~~aa~~l--------------~~lg~~~~~  152 (325)
                      .++..+|.++...|++++|..++++++.+              +...|++..+...+              ..+|.++..
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence            44555566666666666666666666542              22334444443332              234444444


Q ss_pred             cC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        153 LK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       153 ~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      .+ +++|+.+|++++++.+..      ..++..+|.++...|++++|+..|++++...+.      ....+..+|.++..
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKRE  317 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhhHHHHHHHH
Confidence            44 555555555555443221      234555566666666666666655555443211      12345667777777


Q ss_pred             cCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        232 RGDTVAAEKAFKEW-GNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       232 ~gd~~~A~~~~~~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .|++++|++.|+++ ......  ..+...|+.++ ..|+.+.+...+++
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            77777777777776 333222  44566677776 57777777777766

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-13  Score=117.40  Aligned_cols=212  Identities=12%  Similarity=0.022  Sum_probs=153.9

Q ss_pred             hhhhhHHHHHHhhchhc----cc------cccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH
Q psy10061          7 KEEGMEYVKSAEKHSLS----TM------TSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF   76 (325)
Q Consensus         7 ~~~~~~~~~~ae~~~~~----~~------~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~   76 (325)
                      .++|...+.+|-+.--.    |+      ...+++++|+..|.+|.++.        ++.   .+.+..+|.+|...|++
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~---~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDN---QTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC---HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--------ccc---ccccccccccccccccc
Confidence            56666666666543221    32      23478999999999998764        222   35677889999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC---hHHHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061         77 QQCKEYLLKAANCYETNKS---AYHAAKH------LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGA  147 (325)
Q Consensus        77 ~~A~~~~~~a~~~~~~~~~---~~~aa~~------~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg  147 (325)
                      ++|.+++.++..+......   .......      .......+...+.+.+|+..+.+++.+.....+    +.++..+|
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~----~~~~~~l~  179 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----PDVQCGLG  179 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc----cccchhhH
Confidence            9999999999876553211   1111111      111122334446788899999998876443333    34688899


Q ss_pred             HHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q psy10061        148 KSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALV  226 (325)
Q Consensus       148 ~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  226 (325)
                      .++...+ +++|+.+|++++.+.+..      ..++..+|.+|..+|++++|+.+|++++.+.+.      ...++.++|
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg  247 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSRYNLG  247 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccccccccccc------ccchhhhhhcccccccchhHHHHHHHHHHHhhc------cHHHHHHHH
Confidence            9999887 999999999999875432      468899999999999999999999999986322      124778999


Q ss_pred             HHHHhcCCHHHHHHHHHhh
Q psy10061        227 LVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       227 ~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+|...|++++|+++|+++
T Consensus       248 ~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         248 ISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             HHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999996

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.3e-11  Score=104.41  Aligned_cols=193  Identities=8%  Similarity=-0.103  Sum_probs=132.8

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      +.+.+.++..+.+.......       .-+.-+..|...|.+|...|++++|+.+|.+++.+....      +.++.++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~-------~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg   78 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRAL-------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLG   78 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhc
Confidence            34677777777776543321       224557788889999999999999999999999875432      56799999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|..+|++++|+.+|++++.+....      ..++.++|.+|...+ +++|+..|++++++.....      .....++
T Consensus        79 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~  146 (259)
T d1xnfa_          79 IYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSLWLY  146 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHhhh------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH------HHHHHHH
Confidence            99999999999999999999874432      236889999999887 9999999999998765321      1122233


Q ss_pred             HHHHHcCCHHHHHHHHHH-----------------------------HHHHHHH-cccHHHHHHHHHHHHHHHHhcCCHH
Q psy10061        187 RMCVRVKEFDKAADLIRQ-----------------------------EIGYHQE-SEHLLAIGRLAVALVLVQLARGDTV  236 (325)
Q Consensus       187 ~~~~~~g~~~~A~~~~~~-----------------------------al~~~~~-~~~~~~~~~~~~~lg~~~~~~gd~~  236 (325)
                      ..+...+....+......                             +...... .........+++.+|.+|...|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHH
Confidence            333333322222111111                             1110000 0011223456778999999999999


Q ss_pred             HHHHHHHhh
Q psy10061        237 AAEKAFKEW  245 (325)
Q Consensus       237 ~A~~~~~~~  245 (325)
                      +|..+|+++
T Consensus       227 ~A~~~~~~a  235 (259)
T d1xnfa_         227 SATALFKLA  235 (259)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999997

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=1.6e-11  Score=96.68  Aligned_cols=133  Identities=13%  Similarity=0.069  Sum_probs=98.0

Q ss_pred             HHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         58 SAADDYSKA--ATCFKGAKSFQQCKEYLLKAANCYETNKS------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        58 ~A~~~y~~a--~~~y~~~g~~~~A~~~~~~a~~~~~~~~~------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      +.++.|..+  |..+...|+|++|+..|.+++++.....+      ....+.+|.++|.+|..+|++++|+..+++++.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            445566655  66777889999999999999999987754      3446788999999999999999999999999999


Q ss_pred             HHHcCCH-----HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHH
Q psy10061        130 FLEQGNR-----EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCV  190 (325)
Q Consensus       130 ~~~~g~~-----~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~lg~~~~  190 (325)
                      +.+.+..     .....++.++|.+|...+ +++|+.+|++|+++.++... .......+..++.-+.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~  152 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA  152 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHH
Confidence            8876442     334556778888888777 88888888888888776543 2333333444444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=1.8e-11  Score=96.31  Aligned_cols=116  Identities=10%  Similarity=-0.038  Sum_probs=95.6

Q ss_pred             HHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061         98 HAAKHLEQA--IMMCKELNDLTDVENLAKQAATLFLEQGN------REAASTVLEKGAKSLEELK-SDAALTLYSRAADV  168 (325)
Q Consensus        98 ~aa~~~~~~--~~~y~~~g~~~eA~~~~~~A~~~~~~~g~------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~  168 (325)
                      ..+.+|..+  |..+...|+|++|+..|++|+++....++      ....+.++.++|.+|...+ +++|+..|++++.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            345556655  77888889999999999999999988765      3345778999999999988 99999999999999


Q ss_pred             HhcCCC-----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q psy10061        169 AHGEDN-----YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  213 (325)
Q Consensus       169 ~~~~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  213 (325)
                      ++....     ......++.++|.+|..+|++++|+..|++++++.++..
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            876432     223355788999999999999999999999999988764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-11  Score=101.41  Aligned_cols=136  Identities=13%  Similarity=0.052  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         57 DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        57 ~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      .++..+|++ |..+...|+|+.|++.|.+.       .++.  +.++.++|.+|..+|++++|+.+|++|+++-.     
T Consensus         3 ~~~~~l~~~-g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-----   67 (192)
T d1hh8a_           3 VEAISLWNE-GVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDK-----   67 (192)
T ss_dssp             HHHHHHHHH-HHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred             HHHHHHHHH-HHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----
Confidence            456677776 77777788888877776542       2221  34677888888888888888888888876521     


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN----------YKQAAEYISRAARMCVRVKEFDKAADLIRQE  205 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  205 (325)
                       .-+.++.++|.++...+ +++|+..|++|+...+....          .....+++.++|.++..+|++++|++.|.++
T Consensus        68 -~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          68 -HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             11446777888877776 88888888888765443221          1123456677777777777777777777766


Q ss_pred             HHH
Q psy10061        206 IGY  208 (325)
Q Consensus       206 l~~  208 (325)
                      +.+
T Consensus       147 ~~~  149 (192)
T d1hh8a_         147 TSM  149 (192)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-10  Score=87.52  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLA  217 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~  217 (325)
                      |..+.++|..+...+ |++|+.+|++++++.+..      ..++.++|.+|..+|+|++|+..|++++++.+... ....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            455677887777766 888888888888775432      35788888888888888888888888888877654 3455


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        218 IGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       218 ~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .+.++.++|.++...+++.+|+++|+++
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            6778888888888888888888888887

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1e-10  Score=102.73  Aligned_cols=164  Identities=11%  Similarity=0.012  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCH
Q psy10061         58 SAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELN-DLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        58 ~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g-~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      +-.++|..++.++...+.+++|+.++.+++++....      ..++.+.|.++..+| ++++|+.++++++++..+    
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----  110 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----  110 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----
Confidence            344556666666666666666666666666654332      345666666666655 366666666666555221    


Q ss_pred             HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH
Q psy10061        137 EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  215 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  215 (325)
                        -..++.++|.++...+ +++|+.++.+++++....      ..++.++|.++..+|++++|+..|++++++-+..   
T Consensus       111 --~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n---  179 (315)
T d2h6fa1         111 --NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---  179 (315)
T ss_dssp             --CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---
T ss_pred             --hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc---
Confidence              1235666666666665 666666666666654332      2466666666666666666666666666642111   


Q ss_pred             HHHHHHHHHHHHHHHhcCC------HHHHHHHHHhh
Q psy10061        216 LAIGRLAVALVLVQLARGD------TVAAEKAFKEW  245 (325)
Q Consensus       216 ~~~~~~~~~lg~~~~~~gd------~~~A~~~~~~~  245 (325)
                         ..+++++|.++...+.      +.+|++.+.++
T Consensus       180 ---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a  212 (315)
T d2h6fa1         180 ---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  212 (315)
T ss_dssp             ---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHH
Confidence               1244555555555443      45566666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-10  Score=94.19  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=102.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy10061        105 QAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  183 (325)
Q Consensus       105 ~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  183 (325)
                      +-|..+...|+|++|++.|.++       .+..  +.++.++|.+|...+ +++|+.+|++|+++.+..      ..++.
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~------~~a~~   74 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYF   74 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh------hhhHH
Confidence            4588889999999999888753       2222  346889999999988 999999999999875432      46899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        184 RAARMCVRVKEFDKAADLIRQEIGYHQESEH----------LLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       184 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++|.+|.++|+|++|+..|++++...+....          ......+++++|.++...|++++|.+.|+++
T Consensus        75 ~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          75 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999986443210          1122457789999999999999999999997

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.2e-11  Score=103.05  Aligned_cols=185  Identities=9%  Similarity=0.037  Sum_probs=141.0

Q ss_pred             ccccccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         25 MTSDRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK-SFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        25 ~~~~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      +...+++++|++++.+|.++.        |++.   ++|..-|.++...| ++++|+.++.+++.+..+.      ..++
T Consensus        53 ~~~~e~~~~Al~~~~~ai~ln--------P~~~---~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~------~~a~  115 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIELN--------AANY---TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVW  115 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHC--------TTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHhCCchHHHHHHHHHHHHHC--------CCCh---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh------hhHH
Confidence            334457788888888887765        2222   34566677777766 6999999999998887654      5689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .+.|.++..+|++++|+.++.+++.+...  +    ..++.++|.++...+ +++|+.+|.+++++-...      ..++
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~--n----~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n------~~a~  183 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAK--N----YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVW  183 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhc--c----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc------HHHH
Confidence            99999999999999999999999976332  2    347899999999888 999999999999985443      3588


Q ss_pred             HHHHHHHHHcCC------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        183 SRAARMCVRVKE------FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       183 ~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      .++|.++...++      +.+|+..+.+++.+.+..      ..+++.++.++... ...++.+.++.+
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~------~~~~~~l~~ll~~~-~~~~~~~~~~~~  245 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQDR-GLSKYPNLLNQL  245 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTTT-CGGGCHHHHHHH
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc------hHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence            899999888776      578999999988874432      13556677775544 356777777776

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.9e-10  Score=84.43  Aligned_cols=102  Identities=13%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAA  139 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~a  139 (325)
                      ..+...|+.|...|+|++|+.+|.+++++...      -..++.++|.+|..+|+|++|+..+++|+++...... ....
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34556677777777777777777777766432      1346777777777777777777777777777666533 4555


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADV  168 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~  168 (325)
                      +.++.++|.++...+ +++|+.+|++++..
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            666777777776665 77777777776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.4e-09  Score=89.01  Aligned_cols=104  Identities=13%  Similarity=-0.086  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED  173 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~  173 (325)
                      .....+.++.++|.+|..+|++++|+.+|++++.+-.  .+    +.++.++|.+|...+ +++|+.+|++++++.+.. 
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-  104 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-  104 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh-
Confidence            3456788999999999999999999999999998732  22    457999999999987 999999999999986543 


Q ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        174 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       174 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                           ..++.++|.+|..+|++++|+..|++++.+.+
T Consensus       105 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_         105 -----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             -----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             -----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence                 25788999999999999999999999988643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.1e-09  Score=83.72  Aligned_cols=128  Identities=10%  Similarity=0.012  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS---------AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATL  129 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~  129 (325)
                      .+..+..-|+.+...|+|++|+..|.+++.+......         ......+|.++|.+|.++|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4555666677777777777777777777777654322         1223457788888888888888888888888877


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10061        130 FLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA  198 (325)
Q Consensus       130 ~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  198 (325)
                      -.      .-..++..+|.+|...+ +++|+.+|++++++.+..      ..+...++.+....+++.+.
T Consensus        92 ~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 DS------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cc------cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Confidence            21      12446788888888877 888888888888876532      23555666666665555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-09  Score=83.84  Aligned_cols=99  Identities=14%  Similarity=0.032  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061         99 AAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus        99 aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .|..+...|+.|.+.|+|++|+.+|++++.+...      -+.++.++|.+|...+ +++|+.+|++++++....     
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-----   77 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-----   77 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-----
Confidence            3455666777888888888888888888776322      2446778888887776 888888888888775432     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061        178 AAEYISRAARMCVRVKEFDKAADLIRQEIGYH  209 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  209 (325)
                       ..++..+|.++..+|+|++|+..|++++.+.
T Consensus        78 -~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          78 -IKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence             3567778888888888888888888887763

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2e-09  Score=85.57  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q psy10061         98 HAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNR---------EAASTVLEKGAKSLEELK-SDAALTLYSRAAD  167 (325)
Q Consensus        98 ~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~---------~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~  167 (325)
                      ..+..+.+.|+.+...|+|++|+.+|++|+.++......         .-...++.++|.+|...+ +++|+.++++++.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            467788889999999999999999999999886544321         112234455555555554 6666666666665


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        168 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +-+..      ..++..+|.+|..+|+|++|+..|++++.+
T Consensus        91 ~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          91 LDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccc------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            53221      245555666666666666666666665554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=5.4e-10  Score=90.54  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +..+.+.|+.|...|+|++|+.+|++|+++-..      -+.++.++|.+|...+ +++|+.+|++|+++.+..      
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------
Confidence            345667788888888888888888888776321      2456778888888776 888888888887653321      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  212 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  212 (325)
                      ..++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3567788888888888888888888888876653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.7e-09  Score=81.30  Aligned_cols=128  Identities=17%  Similarity=0.091  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      ++.+..-|+.|...|+|++|+.+|.+++.+....      +.++.++|.+|..+|++++|+.+|++++++-.      .-
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p------~~   77 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDK------KY   77 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh------hhhhhhhHHHHHhccccchHHHHHHHHHHHcc------cc
Confidence            3445566888889999999999999999876532      56899999999999999999999999998732      22


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM--CVRVKEFDKAADLIRQE  205 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~~a  205 (325)
                      ..++.++|.++...+ +++|+.+|++++.+.....      .++..++.+  ....+.+.+|+...+..
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            356899999999988 9999999999999865431      233344444  33444566665544333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.00  E-value=4.2e-09  Score=83.48  Aligned_cols=103  Identities=9%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQG---------NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g---------~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      +..+...|+.+.+.|+|.+|+.+|++|+.+....-         .....+.++.++|.+|...+ +++|+.++++++.+.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            34444455555555555555555555554432111         01112234455555555554 555555555555543


Q ss_pred             hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      +..      ..++.++|.+|..+|+|++|+..|++++.+
T Consensus        95 p~~------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          95 SAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             cch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            221      245555666666666666666666665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1e-08  Score=76.08  Aligned_cols=92  Identities=14%  Similarity=0.101  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  220 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  220 (325)
                      -+.+-|..+...+ +++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+..|.+++.+.+.      ...
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~   72 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGK   72 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccc------hhh
Confidence            3556677776666 888888888888765433      357788888888888888888888888876432      113


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        221 LAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       221 ~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +++++|.++..+|++++|+..|+++
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5678888888888888888888887

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.97  E-value=1.1e-08  Score=80.96  Aligned_cols=126  Identities=13%  Similarity=0.041  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10061         60 ADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNK---------SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLF  130 (325)
Q Consensus        60 ~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~---------~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~  130 (325)
                      ++.+...|+.+...|+|.+|+..|.+++.+.....         .......+|.|+|.||..+|++++|+.++++++.+-
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            45566667777777777777777777776654321         122356789999999999999999999999999772


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10061        131 LEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK  197 (325)
Q Consensus       131 ~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  197 (325)
                      .  .+    ..++.++|.+|...+ +++|+.+|++++.+.+..      ..+...++.+....+.+.+
T Consensus        95 p--~~----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          95 S--AN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHHH
T ss_pred             c--ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHH
Confidence            2  22    457999999999998 999999999999875543      2466677777766665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.96  E-value=5.3e-09  Score=81.55  Aligned_cols=104  Identities=9%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN----------REAASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~----------~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      ..+..-|+.+...|+|.+|+..|++|+.++.....          ....+.++.++|.+|..++ +++|+.+|++|+++.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            34444455555555555555555555544322211          1112335667777777766 777777777777664


Q ss_pred             hcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        170 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      +..      ..++.++|.+|..+|++++|+..|++++.+.+
T Consensus        98 p~~------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          98 KNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             TTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             chh------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            332      35677777777777777777777777777643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=7.6e-09  Score=81.92  Aligned_cols=100  Identities=10%  Similarity=0.013  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQ----------GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG  171 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~----------g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~  171 (325)
                      +...|..+...|+|.+|+..|++|+.+....          ......+.++.++|.+|...+ +++|+..|.+|+++.+.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            4445555555566666666665555443211          011223445666666666665 77777777776654322


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        172 EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       172 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                      .      ..++.++|.+|..+|+|++|+..|++++++
T Consensus       110 ~------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         110 N------TKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             h------hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            1      346666777777777777777777777665

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2e-09  Score=87.11  Aligned_cols=94  Identities=16%  Similarity=0.069  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        140 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       140 a~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      +..+.+.|..+...+ |++|+.+|++|+++.+..      ..++.++|.+|..+|+|++|+..|++++.+.+.      -
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~------~   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC------c
Confidence            456788999999887 999999999999986543      468999999999999999999999999876322      1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++.++|.+|..+|++++|+..|+++
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            246789999999999999999999996

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.1e-09  Score=78.30  Aligned_cols=98  Identities=11%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHH
Q psy10061        101 KHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  179 (325)
Q Consensus       101 ~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~  179 (325)
                      .-+.+-|+.+...|++++|+.+|++++.+....      +.++.++|.+|...+ +++|+..|.+++.+.+..      .
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   71 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------G   71 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccch------h
Confidence            346678999999999999999999998763222      458999999999887 999999999999886543      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        180 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       180 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      .++.++|.++..+|++++|+..|++++.+.+
T Consensus        72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            5889999999999999999999999998643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.1e-10  Score=103.40  Aligned_cols=114  Identities=7%  Similarity=-0.002  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCH
Q psy10061        118 DVENLAKQAATLFLEQ-GNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  195 (325)
Q Consensus       118 eA~~~~~~A~~~~~~~-g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  195 (325)
                      +|...|+.++..+.+. +-...-...+.++|.++...+ ++.|+..+++++.+..        ..++.++|.++...|+|
T Consensus        97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~  168 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQT  168 (497)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccH
Confidence            3444444444433322 112233446778898888877 8999999999887643        25788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        196 DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       196 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++|+.+|++++.+.+..+      ..++++|.++...|++.+|..+|.++
T Consensus       169 ~~A~~~y~~A~~l~P~~~------~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         169 SQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999998865544      46688999999999999999999985

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=1.7e-08  Score=79.80  Aligned_cols=127  Identities=14%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10061         59 AADDYSKAATCFKGAKSFQQCKEYLLKAANCYETN----------KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAAT  128 (325)
Q Consensus        59 A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~----------~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~  128 (325)
                      .++.+...|+.+...|+|.+|+..|.+++.+....          ......+.++.++|.+|.++|++++|+..++++++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            34455666777777788888888887777654421          11245677899999999999999999999999987


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10061        129 LFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK  197 (325)
Q Consensus       129 ~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  197 (325)
                      +-.      .-+.++.++|.+|...+ +++|+..|++++++.+..      ..+...++.+......+.+
T Consensus       106 ~~p------~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n------~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         106 IDP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             TCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHH
T ss_pred             hhh------hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHH
Confidence            632      22457999999999988 999999999999986543      2356666766665554444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.91  E-value=5.6e-09  Score=76.94  Aligned_cols=91  Identities=10%  Similarity=-0.013  Sum_probs=58.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      .++|.++.+.|++++|+.++++++.+...      -..++..+|.++...+ +++|+.+|++++++.+..      ..++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~   87 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVH   87 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhccccccccccccc------ccch
Confidence            45666667777777777777777655321      1346666777776665 777777777777664432      3466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q psy10061        183 SRAARMCVRVKEFDKAADLIRQEI  206 (325)
Q Consensus       183 ~~lg~~~~~~g~~~~A~~~~~~al  206 (325)
                      ..+|.+|..+|++++|++++++.|
T Consensus        88 ~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          88 AALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh
Confidence            677777777777777777776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.90  E-value=1.6e-08  Score=78.73  Aligned_cols=134  Identities=10%  Similarity=0.024  Sum_probs=89.6

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSFQQCKE-YLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~~~A~~-~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+.++|..+..++.++++.      ++|..|+..|.++..++........... ...           ......++.|+|
T Consensus        12 e~~~~a~~~~~~G~~~f~~------~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Nla   74 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKK------NEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------KNIEISCNLNLA   74 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------hhHHHHHHhhHH
Confidence            3556666666666666654      5666666666666555433332221111 111           112346889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  186 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg  186 (325)
                      .+|.++|++++|+.++++++++-   .+.   +.++.++|.+|...+ +++|+.+|++++++.+..      ..+...++
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~---p~~---~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n------~~~~~~l~  142 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKID---KNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYE  142 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS---TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhcccccc---chh---hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            99999999999999999998763   222   358999999999988 999999999999997643      23445555


Q ss_pred             HHHHH
Q psy10061        187 RMCVR  191 (325)
Q Consensus       187 ~~~~~  191 (325)
                      .+..+
T Consensus       143 ~~~~k  147 (153)
T d2fbna1         143 LCVNK  147 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.86  E-value=6.2e-09  Score=76.66  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=78.1

Q ss_pred             HHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        143 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       143 l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      ..++|..+...+ +++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+..      ..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~a   86 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   86 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhccccccccccccc------ccc
Confidence            456788888877 999999999999886543      4789999999999999999999999999974331      247


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      +..+|.+|..+|++++|.++++++
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHH
Confidence            789999999999999999999985

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=4.6e-09  Score=92.20  Aligned_cols=224  Identities=8%  Similarity=-0.062  Sum_probs=150.8

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAAD-------DYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAK  101 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~-------~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~  101 (325)
                      ...++|++++.++++..        |++..+..       .....+..+...|++.+|+.++.+++....+.      ..
T Consensus        43 ~~~~~al~~~~~~l~~~--------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~------~~  108 (334)
T d1dcea1          43 ELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YG  108 (334)
T ss_dssp             CCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred             cccHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc------HH
Confidence            34588999999887644        55544422       22222344556666788888888887765433      34


Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        102 HLEQAIMMCKELN--DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       102 ~~~~~~~~y~~~g--~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      ++...|.++...+  ++++|+.++++++.+..     ......+..+|.++...+ +++|+.++++++.+....      
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~------  177 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------  177 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-----hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC------
Confidence            5677777776665  58999999999988722     122223567788888776 999999999998765432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccH----------HHHHH--------------HHHHHHHHHHhcCC
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL----------LAIGR--------------LAVALVLVQLARGD  234 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~--------------~~~~lg~~~~~~gd  234 (325)
                      ..++.++|.++..+|++++|+..+++++.+.+.....          .....              .+..+|.++...|+
T Consensus       178 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh
Confidence            4688899999999999998877776666654432110          00000              11246677777888


Q ss_pred             HHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        235 TVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       235 ~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      +.+|...+.+.... +.....++..++.++ ..|+.+.+..+.++
T Consensus       258 ~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~  301 (334)
T d1dcea1         258 ELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFST  301 (334)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888888887211 122345677888888 58999999888887

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.1e-07  Score=70.97  Aligned_cols=90  Identities=10%  Similarity=-0.042  Sum_probs=51.1

Q ss_pred             HHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccHHHHHHH
Q psy10061        146 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK---EFDKAADLIRQEIGYHQESEHLLAIGRL  221 (325)
Q Consensus       146 lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~  221 (325)
                      +...+...+ +++|.+.|++++.+.+..      ..++.++|.++++.+   ++.+|+.+|++++..    ........+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~   74 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHH
Confidence            333333333 666777777776654432      346667777766543   334566666665542    111222345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        222 AVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       222 ~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ++++|.+|...|++++|+.+|+++
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            666777777777777777777776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-07  Score=67.17  Aligned_cols=68  Identities=16%  Similarity=0.008  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q psy10061        102 HLEQAIMMCKELNDLTDVENLAKQAATLFLEQGN-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVA  169 (325)
Q Consensus       102 ~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~-~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~  169 (325)
                      .+.++|.++.+.|+|++|+.+|++|+.+...... ....+.++.++|.++...+ +++|+.+|++++++-
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3445666666666666666666666655544321 1223345555555555554 555555555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.1e-07  Score=70.90  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        103 LEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       103 ~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      +.++++.+...+++++|.+.|++++.+-.  .+    ..++.++|.++...+    +.+|+..|++++..    +.....
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p--~~----~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~   71 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGS--VS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchH
Confidence            35677888888999999999999987522  12    347889999987643    67899999998742    222334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..++.++|.+|.++|+|++|+.+|++++.+-+.
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            568999999999999999999999999997543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-07  Score=66.44  Aligned_cols=82  Identities=11%  Similarity=-0.033  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHH
Q psy10061        142 VLEKGAKSLEELK-SDAALTLYSRAADVAHGED-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG  219 (325)
Q Consensus       142 ~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  219 (325)
                      -+.++|.++...+ |++|+.+|++|+++.+... .....+.++.++|.++.++|++++|+.+|+++|++.+..      .
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~------~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH------Q   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC------H
Confidence            4568898888776 9999999999999887653 234456789999999999999999999999999874332      1


Q ss_pred             HHHHHHHHHH
Q psy10061        220 RLAVALVLVQ  229 (325)
Q Consensus       220 ~~~~~lg~~~  229 (325)
                      .++.+++.+.
T Consensus        81 ~a~~Nl~~~~   90 (95)
T d1tjca_          81 RANGNLKYFE   90 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-07  Score=87.89  Aligned_cols=119  Identities=8%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Q psy10061         76 FQQCKEYLLKAANCYETN-KSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK  154 (325)
Q Consensus        76 ~~~A~~~~~~a~~~~~~~-~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~  154 (325)
                      ..+|...|..++..+.+. +-...-...+.++|.++.+.|++++|+..+++++.+..        ..++.++|.++...+
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcc
Confidence            455666666666555432 22234456788999999999999999999999987643        257889999999887


Q ss_pred             -HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10061        155 -SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  208 (325)
Q Consensus       155 -~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  208 (325)
                       +++|+.+|++|+++.+..+      .+++++|.++...|++.+|+.+|.+++.+
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~------~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             cHHHHHHHHHHHHHHCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence             9999999999999987765      58999999999999999999999999864

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.3e-08  Score=89.24  Aligned_cols=205  Identities=8%  Similarity=-0.074  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy10061         30 KKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAK--SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAI  107 (325)
Q Consensus        30 ~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g--~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~  107 (325)
                      .+.+|+.+++++.+...+        .   ...+...|.++...+  ++++|+..+.+++.+....     ....+..++
T Consensus        88 ~~~~al~~~~~~l~~~pk--------~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~  151 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPK--------S---YGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRF  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTT--------C---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC--------c---HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-----hhhhhhHHH
Confidence            466777777777664422        1   133445555555544  4778888888877764321     222345667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc----------CCChh
Q psy10061        108 MMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHG----------EDNYK  176 (325)
Q Consensus       108 ~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~----------~~~~~  176 (325)
                      .++...+.+++|+.++++++.+-.  .+    ..++.++|.++...+ +++|+..+++++++...          .+...
T Consensus       152 ~~~~~~~~~~~Al~~~~~~i~~~p--~~----~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  225 (334)
T d1dcea1         152 VAAQAAVAPAEELAFTDSLITRNF--SN----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  225 (334)
T ss_dssp             HHHHTCCCHHHHHHHHHTTTTTTC--CC----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHhccccHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchh
Confidence            777777888888887777765422  11    224566666665543 32222222222222111          01111


Q ss_pred             hHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10061        177 QAA--------------EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAF  242 (325)
Q Consensus       177 ~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~  242 (325)
                      .+.              ..+..+|.++...|++.+|+..+.+++...     + ....++..+|.++...|++++|.++|
T Consensus       226 ~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p-~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         226 QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-----K-WCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             SHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-----H-HHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-----c-hHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            111              122356777888899999999888876642     2 23457889999999999999999999


Q ss_pred             HhhcccCCChHHHHHHHHHHH
Q psy10061        243 KEWGNCCEAPEVQTLEKLLQA  263 (325)
Q Consensus       243 ~~~~~~~~~~e~~~l~~L~~a  263 (325)
                      +++-..++ ........|...
T Consensus       300 ~~ai~ldP-~~~~y~~~L~~~  319 (334)
T d1dcea1         300 STLKAVDP-MRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHCG-GGHHHHHHHHHH
T ss_pred             HHHHHHCc-ccHHHHHHHHHH
Confidence            99822221 223445555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.37  E-value=3.2e-07  Score=70.50  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----------C-HHHHHHHHHHHHHHHhcCCChhh
Q psy10061        109 MCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL----------K-SDAALTLYSRAADVAHGEDNYKQ  177 (325)
Q Consensus       109 ~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~----------~-~~~A~~~y~~Al~~~~~~~~~~~  177 (325)
                      .|.+++.|++|+..|++|+.+--.      -+.++.++|.++...          + +++|+.+|++|+++-+..     
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-----   74 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----   74 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-----
Confidence            456677899999999999877322      234677777776532          2 689999999999885443     


Q ss_pred             HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        178 AAEYISRAARMCVRVKE-----------FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       178 ~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                       ..++.++|.+|..+|+           |.+|+++|++++++.+..      ..++..++.+.-.
T Consensus        75 -~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~------~~~~~~L~~~~ka  132 (145)
T d1zu2a1          75 -DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN------THYLKSLEMTAKA  132 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHTH
T ss_pred             -hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH------HHHHHHHHHHHHH
Confidence             4688899999988753           577888888877764332      1344556666433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=3.9e-06  Score=72.19  Aligned_cols=166  Identities=11%  Similarity=0.026  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAAS  140 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa  140 (325)
                      ..+...+.+....|+++.|...|.+++.....  +   ...++...+.+..+.|++++|...|++++.......      
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~--~---~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------  168 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------  168 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--C---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------
Confidence            35556677777888888888888887643221  1   223456667777777888888888888765432221      


Q ss_pred             HHHHHHHHHHh-ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHH
Q psy10061        141 TVLEKGAKSLE-ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  218 (325)
Q Consensus       141 ~~l~~lg~~~~-~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  218 (325)
                      ..+...+.... ..+ .+.|...|++++..+...      ...+...+......|+++.|..+|++++........  ..
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~--~~  240 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--KS  240 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--GC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HH
Confidence            23444554432 233 788888888888766543      356677777888888888888888888764322111  11


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        219 GRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       219 ~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ...+..........|+.+.+.+.++++
T Consensus       241 ~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         241 GEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            123344444455668888888887775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.4e-05  Score=67.09  Aligned_cols=242  Identities=9%  Similarity=-0.028  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         31 KEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKGAKSF-------QQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        31 ~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      ...+...|++|.+.....-    .=|-..++....-+......+..       +++...|.+|+..+.     ......+
T Consensus        32 ~~Rv~~vyerAl~~~~~~~----~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~-----p~~~~l~  102 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----KKNMLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----TTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC-----CCCHHHH
Confidence            4557778888887764311    11234555555555555445544       455555555543321     1123467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhHHHHH
Q psy10061        104 EQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  182 (325)
Q Consensus       104 ~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~  182 (325)
                      ...+.++..+|++++|...|++++....  .+   ...++...+......+ ++.|...|.+++.......      ..+
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~--~~---~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------~~~  171 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIED--ID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------HVY  171 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSS--SC---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------HHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhc--CC---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHH
Confidence            7778899999999999999999875311  12   1234566666666554 9999999999987654332      355


Q ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCC-hHH-HHHH
Q psy10061        183 SRAARMC-VRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEA-PEV-QTLE  258 (325)
Q Consensus       183 ~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~-~e~-~~l~  258 (325)
                      ...+.+. ...|+.+.|..+|++++..++..      ..++...+......|++++|+..|+++ ..+... +.. .+-.
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~  245 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA  245 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            5666654 45689999999999999875432      245667788888999999999999998 433222 222 2333


Q ss_pred             HHHHHH-hcCCHHHHHHHhcC--hhhhcc--cHHHHHHhhcCCCC
Q psy10061        259 KLLQAF-DEEDPEGARQALND--PFIKHM--DVEYSRLARDLPLP  298 (325)
Q Consensus       259 ~L~~a~-~~gd~~~~~~~~~~--~~~~~l--~~~~~~~~~~l~~~  298 (325)
                      ....-- ..||.+.+....++  .++...  ..++..+..+.+.+
T Consensus       246 ~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ry~~~  290 (308)
T d2onda1         246 RFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFM  290 (308)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHHHHHhc
Confidence            333432 47999999998776  333222  13455555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=5.4e-06  Score=65.74  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCCChhhH
Q psy10061        100 AKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQA  178 (325)
Q Consensus       100 a~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~  178 (325)
                      -..+.+.|......|++++|+..|.+|+.+++  |++.             .... .+.+.   .....+-      ...
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l-------------~~~~~~~w~~---~~r~~l~------~~~   66 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWR--GPVL-------------DDLRDFQFVE---PFATALV------EDK   66 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT-------------GGGTTSTTHH---HHHHHHH------HHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc-------------ccCcchHHHH---HHHHHHH------HHH
Confidence            34667778888888999999999999988765  3221             0000 00000   0011110      112


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q psy10061        179 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  245 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~  245 (325)
                      ..++.+++.++..+|++++|+.++++++.+.+....      ++..++.++...|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~------~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------LWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            356777888888888888888888888887766642      4566788888888888888888886

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.23  E-value=5.2e-05  Score=63.07  Aligned_cols=79  Identities=8%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             cccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy10061         28 DRKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCFKG----AKSFQQCKEYLLKAANCYETNKSAYHAAKHL  103 (325)
Q Consensus        28 ~~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~  103 (325)
                      .+++.+|+++|++|.+.         ++.    +++..+|.+|..    ..++..|...+..+..    .+++    .+.
T Consensus        15 ~~d~~~A~~~~~kAa~~---------g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~----~~~~----~a~   73 (265)
T d1ouva_          15 EKDFTQAKKYFEKACDL---------KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD----LNYS----NGC   73 (265)
T ss_dssp             TTCHHHHHHHHHHHHHT---------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH----HHH
T ss_pred             CCCHHHHHHHHHHHHHC---------CCH----HHHHHHHHHHHcCCCcchhHHHHHHhhccccc----cccc----chh
Confidence            45899999999998652         222    345567777776    5677777777776542    2222    234


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHH
Q psy10061        104 EQAIMMCKE----LNDLTDVENLAKQAA  127 (325)
Q Consensus       104 ~~~~~~y~~----~g~~~eA~~~~~~A~  127 (325)
                      ..+|.++..    ..+...|..+++++.
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhh
Confidence            555666553    346677777777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.21  E-value=0.00012  Score=60.70  Aligned_cols=208  Identities=12%  Similarity=0.025  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCH
Q psy10061         61 DDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKE----LNDLTDVENLAKQAATLFLEQGNR  136 (325)
Q Consensus        61 ~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~----~g~~~eA~~~~~~A~~~~~~~g~~  136 (325)
                      +.+..+|..+...+++++|.++|.++++    .|+    +.++.++|.+|..    ..++..|..+++.+..    .++.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~g~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~----~~~~   70 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD----LNYS   70 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc----cccc
Confidence            3456778888899999999999999864    355    3578889999987    5688999999888753    3333


Q ss_pred             HHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHh------------c----CCChh------------hHHHHHH
Q psy10061        137 EAASTVLEKGAKSLEEL-----KSDAALTLYSRAADVAH------------G----EDNYK------------QAAEYIS  183 (325)
Q Consensus       137 ~~aa~~l~~lg~~~~~~-----~~~~A~~~y~~Al~~~~------------~----~~~~~------------~~~~~~~  183 (325)
                      .    ....+|.++...     ..++|+.+|+++.+.-.            .    .....            .....+.
T Consensus        71 ~----a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  146 (265)
T d1ouva_          71 N----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCT  146 (265)
T ss_dssp             H----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             c----hhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhh
Confidence            2    234455554432     26777777766653100            0    00000            0013455


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhcccCCChHHH
Q psy10061        184 RAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEWGNCCEAPEVQ  255 (325)
Q Consensus       184 ~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~~~~~~~~e~~  255 (325)
                      .+|.+|..    ..+...+..+++.+.+    .++    ..+.+++|.+|..    ..|+..|..+|+++-...   ...
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~----~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~  215 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACD----LKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG  215 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccc----ccc----cccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence            66666665    2345555555555433    232    2466789999987    678999999999982221   134


Q ss_pred             HHHHHHHHHhcC-----CHHHHHHHhcChhhhcccHHHHHHhhcCC
Q psy10061        256 TLEKLLQAFDEE-----DPEGARQALNDPFIKHMDVEYSRLARDLP  296 (325)
Q Consensus       256 ~l~~L~~a~~~g-----d~~~~~~~~~~~~~~~l~~~~~~~~~~l~  296 (325)
                      ....|+..+..|     |.+.+....++++-... .+-...+.+|.
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~-~~A~~~l~~l~  260 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA-KGACDILKQLK  260 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC-HHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC-HHHHHHHHHHH
Confidence            566788877433     67777777776432222 23344444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.16  E-value=2.2e-06  Score=65.62  Aligned_cols=91  Identities=13%  Similarity=0.069  Sum_probs=64.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCCHHHH
Q psy10061         70 FKGAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKEL----------NDLTDVENLAKQAATLFLEQGNREAA  139 (325)
Q Consensus        70 y~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~----------g~~~eA~~~~~~A~~~~~~~g~~~~a  139 (325)
                      |.+++.|++|+..|++++.+....      +.++.++|.++...          +.+++|+.+|++|+++-.      .-
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P------~~   74 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------KK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------TC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcc------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc------hh
Confidence            445566889999999988777543      46788888887754          445788888888887622      12


Q ss_pred             HHHHHHHHHHHhcc-----------C-HHHHHHHHHHHHHHHhcC
Q psy10061        140 STVLEKGAKSLEEL-----------K-SDAALTLYSRAADVAHGE  172 (325)
Q Consensus       140 a~~l~~lg~~~~~~-----------~-~~~A~~~y~~Al~~~~~~  172 (325)
                      ..++.++|.+|...           + +++|+++|++|+++-+..
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            34677888887643           2 688888888888876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=3.1e-05  Score=61.19  Aligned_cols=99  Identities=9%  Similarity=-0.034  Sum_probs=67.7

Q ss_pred             ccccHHHHHHHHHHHHhhhcccccCC--CCCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q psy10061         27 SDRKKEEGMEYVKSAEKHLKTSLLKW--KPDY---------DSAADDYSKAATCFKGAKSFQQCKEYLLKAANCYETNKS   95 (325)
Q Consensus        27 ~~~~~~eA~~l~~~A~~~~~~~~~~~--~~~~---------~~A~~~y~~a~~~y~~~g~~~~A~~~~~~a~~~~~~~~~   95 (325)
                      ..|++++|.++|.+|+.+.+..++.+  ...|         +...+++...+.++...|++++|+.++.+++.+....  
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~--  100 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR--  100 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc--
Confidence            35689999999999998876533211  1111         2234566677777778888888888887777766532  


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061         96 AYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFL  131 (325)
Q Consensus        96 ~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~  131 (325)
                          ..++..++.+|..+|++.+|+..|+++...+.
T Consensus       101 ----e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2         101 ----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             ----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                24677777888888888888888877776654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00023  Score=52.81  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH---
Q psy10061        115 DLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR---  191 (325)
Q Consensus       115 ~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~---  191 (325)
                      |+++|+.+|+++++    .|+..    +...++.. ...++++|+.+|+++.+.    ++    ..+...+|.+|..   
T Consensus         8 d~~~A~~~~~kaa~----~g~~~----a~~~l~~~-~~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~~   70 (133)
T d1klxa_           8 DLKKAIQYYVKACE----LNEMF----GCLSLVSN-SQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHH----TTCTT----HHHHHHTC-TTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHH----CCChh----hhhhhccc-cccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhccc
Confidence            67888888888864    35543    23344421 122488899998888753    33    2466778888876   


Q ss_pred             -cCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Q psy10061        192 -VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW  245 (325)
Q Consensus       192 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~gd~~~A~~~~~~~  245 (325)
                       ..++.+|+.+|+++.+.    +++    .+.+.+|.+|..    ..|+.+|..+|+++
T Consensus        71 ~~~d~~~A~~~~~~aa~~----g~~----~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          71 VKKDLRKAAQYYSKACGL----NDQ----DGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhhhcc----Ccc----hHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence             45788999999888653    332    345678888876    46788888888886

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.50  E-value=0.00071  Score=50.03  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-
Q psy10061         75 SFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLEEL-  153 (325)
Q Consensus        75 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~~~-  153 (325)
                      |+++|+.+|.++++.    ++..    +..+++.  ....++++|+.+++++.+    .|+..    +...+|.+|... 
T Consensus         8 d~~~A~~~~~kaa~~----g~~~----a~~~l~~--~~~~~~~~a~~~~~~aa~----~g~~~----a~~~Lg~~y~~g~   69 (133)
T d1klxa_           8 DLKKAIQYYVKACEL----NEMF----GCLSLVS--NSQINKQKLFQYLSKACE----LNSGN----GCRFLGDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHHT----TCTT----HHHHHHT--CTTSCHHHHHHHHHHHHH----TTCHH----HHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHC----CChh----hhhhhcc--ccccCHHHHHHHHhhhhc----ccchh----hhhhHHHhhhhcc
Confidence            445555555555432    2221    2233333  233578899999999864    46643    578899988752 


Q ss_pred             ----CHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy10061        154 ----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGY  208 (325)
Q Consensus       154 ----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  208 (325)
                          ++.+|+++|+++.+.    ++    ..+..++|.+|..    ..++.+|+.+|+++.+.
T Consensus        70 ~~~~d~~~A~~~~~~aa~~----g~----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHhhhhcc----Cc----chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence                389999999999753    33    3567789999887    46899999999998763

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.38  E-value=0.00023  Score=59.60  Aligned_cols=115  Identities=17%  Similarity=0.025  Sum_probs=75.6

Q ss_pred             ccCHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q psy10061        152 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA  231 (325)
Q Consensus       152 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  231 (325)
                      ..++++|+..|+++++.....      ..++..+|.+|+..|++++|+..|++++++.+...      ..+..++.++..
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~------~~~~~l~~ll~a   76 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL------PGASQLRHLVKA   76 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHh
Confidence            334999999999998876543      46888999999999999999999999988743321      233455666655


Q ss_pred             cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH-hcCCHHHHHHHhcC
Q psy10061        232 RGDTVAAEKAFKEWGNCCEAPEVQTLEKLLQAF-DEEDPEGARQALND  278 (325)
Q Consensus       232 ~gd~~~A~~~~~~~~~~~~~~e~~~l~~L~~a~-~~gd~~~~~~~~~~  278 (325)
                      .+...++...+.+............+...+.+. ..||.+.+.+...+
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            554444333222222223344444444444444 68999999887754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.27  E-value=0.00042  Score=57.96  Aligned_cols=123  Identities=14%  Similarity=0.063  Sum_probs=76.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q psy10061         72 GAKSFQQCKEYLLKAANCYETNKSAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLEQGNREAASTVLEKGAKSLE  151 (325)
Q Consensus        72 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~~g~~~~aa~~l~~lg~~~~  151 (325)
                      ..|++++|+..|.++++.....      +.++..++.+|...|++++|+..+++++++.-.      ....+..++.++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~~~~l~~ll~   75 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPGASQLRHLVK   75 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Confidence            5688888888888887665432      457888889999999999999999988876321      1223444444443


Q ss_pred             ccC-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        152 ELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       152 ~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..+ .+++...+.+..    ..+.+ .....+...+.++...|++++|.+.+.++.++.+.
T Consensus        76 a~~~~~~a~~~~~~~~----~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          76 AAQARKDFAQGAATAK----VLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHTTSCCCEE----CCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             hccccHHHHHHhhhhh----cccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            222 222211111100    01222 22345556777888888888888888888776544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.0059  Score=44.20  Aligned_cols=79  Identities=8%  Similarity=-0.008  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccCCChHH
Q psy10061        179 AEYISRAARMCVRVKEF---DKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEV  254 (325)
Q Consensus       179 ~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~gd~~~A~~~~~~~-~~~~~~~e~  254 (325)
                      ..+..+.|+++++..+.   .+++.++++.+..     ++.....+++.+|++|...|||++|..+++++ ..-....++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            57888999999987644   5788887776542     22233467889999999999999999999998 555566666


Q ss_pred             HHHHHHHH
Q psy10061        255 QTLEKLLQ  262 (325)
Q Consensus       255 ~~l~~L~~  262 (325)
                      ..+..+++
T Consensus       110 ~~L~~~Ie  117 (124)
T d2pqrb1         110 GALKSMVE  117 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.018  Score=41.50  Aligned_cols=67  Identities=9%  Similarity=0.030  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061        140 STVLEKGAKSLEELK----SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  211 (325)
Q Consensus       140 a~~l~~lg~~~~~~~----~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  211 (325)
                      ..+-.+.|..+....    ..+++.++++++..     ++....+++..+|..|.++|+|++|..+++++|++-+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            456677777766542    78999999888753     23344589999999999999999999999999997543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.97  E-value=0.17  Score=32.83  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=31.1

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10061         95 SAYHAAKHLEQAIMMCKELNDLTDVENLAKQAATLFLE  132 (325)
Q Consensus        95 ~~~~aa~~~~~~~~~y~~~g~~~eA~~~~~~A~~~~~~  132 (325)
                      .|-..|..+..-++-+...|+|++||+|+++|+..+.+
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45667788888888888899999999999998877654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.89  E-value=1.5  Score=28.26  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10061        175 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  210 (325)
Q Consensus       175 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  210 (325)
                      +.+.+-.+..-++-+...|+|++||++++++.....
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            344455666777778888888888888888777544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.60  E-value=1.2  Score=29.82  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=23.1

Q ss_pred             ccHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH
Q psy10061         29 RKKEEGMEYVKSAEKHLKTSLLKWKPDYDSAADDYSKAATCF   70 (325)
Q Consensus        29 ~~~~eA~~l~~~A~~~~~~~~~~~~~~~~~A~~~y~~a~~~y   70 (325)
                      .+...|+++..+|.+.-+.      ++|++|..+|.++...+
T Consensus        10 ~~~~~A~~l~~~Av~~D~~------g~y~eA~~~Y~~aie~l   45 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAE------SRYQQALVCYQEGIDML   45 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence            3566777777777666654      66677666666655544