Psyllid ID: psy1009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLLTLIEGMVEGTNQRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQRSVVG
Secondary Structure (PSIPRED)
cHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLLTLIEGMVegtnqrgrprkeYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHcalcfrhplfPLLALIFEkcelatctprepgvaggdvcssesfnEDIAVFSKQRSVVG
Flexible Loop (DISEMBL)
MLLTLIEgmvegtnqrgrprkeyIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSesfnediavfskqrsvvg
Low Complexity Region (SEG)
MLLTLIEGMVEGTNQRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQRSVVG
Disordered region (IsUnstruct)
**********************YIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVC********************
Disordered Region (DISOPRED)
*LLTLIE****************IRDVETAMGYQNYMELKRLAQ****WR************************CFRHPLFPLLALIFEKCELA*****************ESFNEDIAVFSKQR****
Disordered Region (DISEMBL)
MLLTLIEGMVEGTNQRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVF********
Disordered Region (DISPRO)
MLLTLIEGMVEGTNQRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNR*****ISSVHCALCFRHPLFPLLALIFEKCELATCT****************FNEDIAVFSKQRS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLTLIEGMVEGTNQRGRPRKEYIRDVETAMGYQNYMELKRLAQNRNEWRRRTKLLLPTNRQIFQLISSVHCALCFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQRSVVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P79937	390	Homeobox protein Meis1 OS	N/A	N/A	0.379	0.125	0.959	2e-23
Q60954	390	Homeobox protein Meis1 OS	yes	N/A	0.511	0.169	0.736	3e-23
O00470	390	Homeobox protein Meis1 OS	yes	N/A	0.511	0.169	0.736	3e-23
O46339	487	Homeobox protein homothor	yes	N/A	0.379	0.100	0.918	1e-22
P97367	477	Homeobox protein Meis2 OS	no	N/A	0.379	0.102	0.897	2e-22
O14770	477	Homeobox protein Meis2 OS	no	N/A	0.379	0.102	0.897	2e-22
Q6DIF3	453	Homeobox protein meis3 OS	no	N/A	0.379	0.108	0.745	6e-17
Q7ZY13	451	Homeobox protein meis3-B	N/A	N/A	0.379	0.108	0.745	6e-17
Q5U4X3	453	Homeobox protein meis3-A	N/A	N/A	0.379	0.108	0.745	6e-17
P97368	378	Homeobox protein Meis3 OS	no	N/A	0.379	0.129	0.690	7e-16

>sp|P79937|MEIS1_XENLA Homeobox protein Meis1 OS=Xenopus laevis GN=meis1 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 79  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 127

Induces expression of a number of neural crest marker genes as part of a heterodimer with isoform b of pbx1, to specify neural crest cell fate. Binds to a highly conserved region in the promoter of the neural crest marker gene zic3.
Xenopus laevis (taxid: 8355)

>sp|Q60954|MEIS1_MOUSE Homeobox protein Meis1 OS=Mus musculus GN=Meis1 PE=1 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 57/72 (79%), Gaps = 6/72 (8%)

Query: 59  TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
           TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct: 56  TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query: 113 SFNEDIAVFSKQ 124
           SFNEDIAVF+KQ
Sbjct: 116 SFNEDIAVFAKQ 127

Acts as a transcriptional regulator of PAX6. Also acts as a transcriptional activator of PF4 in complex with PBX1 or PBX2. Required for hematopoiesis, megakaryocyte lineage development and vascular patterning. May function as a cofactor for HOXA7 and HOXA9 in the induction of myeloid leukemias.

Mus musculus (taxid: 10090)

>sp|O00470|MEIS1_HUMAN Homeobox protein Meis1 OS=Homo sapiens GN=MEIS1 PE=1 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 57/72 (79%), Gaps = 6/72 (8%)

Query: 59  TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
           TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct: 56  TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query: 113 SFNEDIAVFSKQ 124
           SFNEDIAVF+KQ
Sbjct: 116 SFNEDIAVFAKQ 127

Acts as a transcriptional regulator of PAX6. Acts as a transcriptional activator of PF4 in complex with PBX1 or PBX2. Required for hematopoiesis, megakaryocyte lineage development and vascular patterning. May function as a cofactor for HOXA7 and HOXA9 in the induction of myeloid leukemias.

Homo sapiens (taxid: 9606)

>sp|O46339|HTH_DROME Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGV GGDVCSSESFNEDIA+FSKQ
Sbjct: 98  YEHPLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQ 146

All isoforms are required for patterning of the embryonic cuticle. Acts with exd to delimit the eye field and prevent inappropriate eye development. Isoforms that carry the homeodomain are required for proper localization of chordotonal organs within the peripheral nervous system and antennal identity; required to activate antennal-specific genes, such as sal and to repress the leg-like expression of dac. Necessary for the nuclear localization of the essential HOX cofactor, extradenticle (exd). Both necessary and sufficient for inner photoreceptors to adopt the polarization-sensitive 'dorsal rim area' (DRA) of the eye fate instead of the color-sensitive default state. This occurs by increasing rhabdomere size and uncoupling R7-R8 communication to allow both cells to express the same opsin rather than different ones as required for color vision.

Drosophila melanogaster (taxid: 7227)

>sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct: 81  YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 129

Mus musculus (taxid: 10090)

>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct: 81  YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 129

Homo sapiens (taxid: 9606)

>sp|Q6DIF3|MEIS3_XENTR Homeobox protein meis3 OS=Xenopus tropicalis GN=meis3 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATC+PR+      GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71  YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121

A caudalizing protein which is required to pattern the anterior/posterior (A/P) axis during central nervous system (CNS) formation. Inhibits anterior neural expression and acts as a transcriptional activator to induce posterior neural gene expression. Maintains a proper A/P balance required for hindbrain formation by activating the FGF/MAPK pathway, which modulates the planar cell polarity (PCP) pathway. Interacts with retinoid signaling during hindbrain patterning.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZY13|MEI3B_XENLA Homeobox protein meis3-B OS=Xenopus laevis GN=meis3-b PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATC+PR+      GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71  YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121

A caudalizing protein which is required to pattern the anterior/posterior (A/P) axis during central nervous system (CNS) formation. Inhibits anterior neural expression and acts as a transcriptional activator to induce posterior neural gene expression. Maintains a proper A/P balance required for hindbrain formation by activating the FGF/MAPK pathway, which modulates the planar cell polarity (PCP) pathway. Interacts with retinoid signaling during hindbrain patterning.

Xenopus laevis (taxid: 8355)

>sp|Q5U4X3|MEI3A_XENLA Homeobox protein meis3-A OS=Xenopus laevis GN=meis3-a PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 2/51 (3%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREP--GVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATC+PR+      GGDVCSS+SFNEDIAVF+KQ
Sbjct: 71  YGHPLFPLLALVFEKCELATCSPRDNSGSFPGGDVCSSDSFNEDIAVFAKQ 121

Caudalizing protein which is required to pattern the anterior/posterior (A/P) axis during central nervous system (CNS) formation. Inhibits anterior neural expression and acts as a transcriptional activator to induce posterior neural gene expression. Maintains a proper A/P balance required for hindbrain formation by activating the FGF/MAPK pathway, which modulates the planar cell polarity (PCP) pathway. Interacts with retinoid signaling during hindbrain patterning.

Xenopus laevis (taxid: 8355)

>sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 44/55 (80%), Gaps = 6/55 (10%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVA------GGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLAL+FEKCELATC+PR+   A      GGDVCSS+SFNEDIA F+KQ
Sbjct: 64  YGHPLFPLLALVFEKCELATCSPRDGASAGLGSPPGGDVCSSDSFNEDIAAFAKQ 118

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
38490442	505	homothorax 1 [Cupiennius salei]	0.379	0.097	0.938	8e-22
3024120	390	RecName: Full=Homeobox protein Meis1; Sh	0.379	0.125	0.959	2e-21
383852690	504	PREDICTED: homeobox protein homothorax-l	0.379	0.097	0.959	2e-21
380026090	470	PREDICTED: homeobox protein homothorax-l	0.379	0.104	0.959	2e-21
350422330	469	PREDICTED: homeobox protein homothorax-l	0.379	0.104	0.959	2e-21
345489857	482	PREDICTED: homeobox protein homothorax-l	0.379	0.101	0.959	2e-21
328784947	486	PREDICTED: homeobox protein homothorax-l	0.379	0.100	0.959	2e-21
321464944	479	putative transcriptional factor Homothor	0.379	0.102	0.959	2e-21
298108823	418	homothorax [Polyrhachis vicina]	0.379	0.117	0.959	2e-21
213623826	465	Meis1 protein [Xenopus laevis]	0.379	0.105	0.959	2e-21

>gi|38490442|emb|CAD57739.1| homothorax 1 [Cupiennius salei]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/49 (93%), Positives = 49/49 (100%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           +RHPLFPLLALIFEKCELATCTPREPG+AGGDVCSSESFNEDIAVF+KQ
Sbjct: 89  YRHPLFPLLALIFEKCELATCTPREPGIAGGDVCSSESFNEDIAVFAKQ 137

Source: Cupiennius salei

Species: Cupiennius salei

Genus: Cupiennius

Family: Ctenidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3024120|sp|P79937.1|MEIS1_XENLA RecName: Full=Homeobox protein Meis1; Short=XMeis1 gi|1679676|gb|AAB19196.1| XMeis1-1 protein [Xenopus laevis]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 79  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 127

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383852690|ref|XP_003701858.1| PREDICTED: homeobox protein homothorax-like [Megachile rotundata]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 126 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 174

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026090|ref|XP_003696794.1| PREDICTED: homeobox protein homothorax-like [Apis florea]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 91  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 139

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422330|ref|XP_003493131.1| PREDICTED: homeobox protein homothorax-like [Bombus impatiens]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 91  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 139

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489857|ref|XP_001601467.2| PREDICTED: homeobox protein homothorax-like [Nasonia vitripennis]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 102 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 150

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784947|ref|XP_624460.3| PREDICTED: homeobox protein homothorax-like [Apis mellifera]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 109 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 157

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464944|gb|EFX75948.1| putative transcriptional factor Homothorax protein [Daphnia pulex]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 111 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 159

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298108823|gb|ADI56665.1| homothorax [Polyrhachis vicina]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 41  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 89

Source: Polyrhachis vicina

Species: Polyrhachis vicina

Genus: Polyrhachis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213623826|gb|AAI70273.1| Meis1 protein [Xenopus laevis]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 76  FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
           + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct: 79  YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 127

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
UNIPROTKB|F5GYS8	325	MEIS1 "Homeobox protein Meis1"	0.372	0.147	0.979	1.5e-21
UNIPROTKB|P79937	390	meis1 "Homeobox protein Meis1"	0.379	0.125	0.959	2.7e-21
UNIPROTKB|B7Z4T5	220	MEIS1 "Homeobox protein Meis1"	0.511	0.3	0.736	3e-21
UNIPROTKB|H0YNY8	370	MEIS1 "Homeobox protein Meis1"	0.511	0.178	0.736	3e-21
UNIPROTKB|A4FUE0	390	MEIS1 "Uncharacterized protein	0.511	0.169	0.736	4.7e-21
UNIPROTKB|F1PZA9	390	MEIS1 "Uncharacterized protein	0.511	0.169	0.736	4.7e-21
UNIPROTKB|O00470	390	MEIS1 "Homeobox protein Meis1"	0.511	0.169	0.736	4.7e-21
MGI|MGI:104717	390	Meis1 "Meis homeobox 1" [Mus m	0.511	0.169	0.736	4.7e-21
UNIPROTKB|H0YK79	238	MEIS2 "Homeobox protein Meis2"	0.379	0.205	0.897	1e-20
UNIPROTKB|I3LTS1	307	MEIS2 "Uncharacterized protein	0.379	0.159	0.897	1e-20

UNIPROTKB|F5GYS8 MEIS1 "Homeobox protein Meis1" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 47/48 (97%), Positives = 48/48 (100%)

Query:    77 RHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
             RHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVF+KQ
Sbjct:    15 RHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQ 62

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P79937 meis1 "Homeobox protein Meis1" [Xenopus laevis (taxid:8355)]

 Score = 251 (93.4 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query:    76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
             + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ
Sbjct:    79 YGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 127

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0014036 "neural crest cell fate specification" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IDA

UNIPROTKB|B7Z4T5 MEIS1 "Homeobox protein Meis1" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    24 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 83

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:    84 SFNEDIAVFAKQ 95

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|H0YNY8 MEIS1 "Homeobox protein Meis1" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:   116 SFNEDIAVFAKQ 127

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A4FUE0 MEIS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:   116 SFNEDIAVFAKQ 127

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0002089 "lens morphogenesis in camera-type eye" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|F1PZA9 MEIS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:   116 SFNEDIAVFAKQ 127

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|O00470 MEIS1 "Homeobox protein Meis1" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:   116 SFNEDIAVFAKQ 127

GO:0001525 "angiogenesis" evidence=IEA

GO:0002089 "lens morphogenesis in camera-type eye" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:104717 Meis1 "Meis homeobox 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 53/72 (73%), Positives = 57/72 (79%)

Query:    59 TNRQIFQLISSVHCAL------CFRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 112
             TN     + SSV+ AL       + HPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE
Sbjct:    56 TNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSE 115

Query:   113 SFNEDIAVFSKQ 124
             SFNEDIAVF+KQ
Sbjct:   116 SFNEDIAVFAKQ 127

GO:0001525 "angiogenesis" evidence=IMP

GO:0002089 "lens morphogenesis in camera-type eye" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IC

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IGI;IDA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IDA

GO:0045665 "negative regulation of neuron differentiation" evidence=IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

UNIPROTKB|H0YK79 MEIS2 "Homeobox protein Meis2" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query:    76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
             + HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct:    68 YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 116

GO:0001654 "eye development" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|I3LTS1 MEIS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query:    76 FRHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQ 124
             + HPLFPLLAL+FEKCELATCTPREPGVAGGDVCSS+SFNEDIAVF+KQ
Sbjct:    80 YGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ 128

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00470	MEIS1_HUMAN	No assigned EC number	0.7361	0.5116	0.1692	yes	N/A
Q60954	MEIS1_MOUSE	No assigned EC number	0.7361	0.5116	0.1692	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	93.17
smart00384	26	AT_hook DNA binding domain with preference for A/T	90.91
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	85.93

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=93.17  E-value=0.035  Score=27.10  Aligned_cols=10  Identities=60%  Similarity=1.142  Sum_probs=4.2

Q ss_pred             ccCCCCCCcc
Q psy1009          13 TNQRGRPRKE   22 (129)
Q Consensus        13 KRpRGRPRkR   22 (129)
                      +|+||||++.
T Consensus         1 ~r~RGRP~k~   10 (13)
T PF02178_consen    1 KRKRGRPRKN   10 (13)
T ss_dssp             S--SS--TT-
T ss_pred             CCcCCCCccc
Confidence            5899999974

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=90.91  E-value=0.11  Score=29.82  Aligned_cols=13  Identities=46%  Similarity=0.715  Sum_probs=10.1

Q ss_pred             ccCCCCCCcccHH
Q psy1009          13 TNQRGRPRKEYIR   25 (129)
Q Consensus        13 KRpRGRPRkRW~D   25 (129)
                      +|+||||+|.=.+
T Consensus         1 kRkRGRPrK~~~~   13 (26)
T smart00384        1 KRKRGRPRKAPKD   13 (26)
T ss_pred             CCCCCCCCCCCCc
Confidence            5899999986443

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=85.93  E-value=0.75  Score=29.36  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             hhhhhhhcCCchHHHHHHHHHhhhhh
Q psy1009          70 VHCALCFRHPLFPLLALIFEKCELAT   95 (129)
Q Consensus        70 ~~~~~i~~hplfpll~llfekce~at   95 (129)
                      .=|+.|..||+||-|-.-+=-|-.--
T Consensus         2 ~iKA~I~~HP~Y~~Ll~Ayi~C~KVG   27 (45)
T PF03790_consen    2 AIKAKIASHPLYPRLLAAYIDCQKVG   27 (45)
T ss_pred             hHHHHHHcCCCcHHHHHHHHHHHhcC
Confidence            34889999999998876666675543

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	91.28

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=91.28  E-value=0.075  Score=29.58  Aligned_cols=12  Identities=33%  Similarity=0.609  Sum_probs=9.9

Q ss_pred             cccccCCCCCCc
Q psy1009          10 VEGTNQRGRPRK   21 (129)
Q Consensus        10 p~GKRpRGRPRk   21 (129)
                      |..|||||||+-
T Consensus         2 ptpKrpRgRpkG   13 (26)
T 2ezd_A            2 PTPKRPRGRPKG   13 (26)
T ss_dssp             CSCCCCSSCCTT
T ss_pred             CCCcCCCCCcCc
Confidence            467999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00