Psyllid ID: psy10129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Secondary Structure (PSIPRED)
cHHHHHHccccHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHcccccccccccEEEHHHHHcccccccHHHHHHccccccccHHHHHHHHHHccccccccccHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHcccccccccccEEEEEccEcccccccccccHHHcccccccccHHHHHHHHcccEEEEEEcccHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
irhainknnISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKdnfctrgipttCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Flexible Loop (DISEMBL)
irhainknnisirevTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Low Complexity Region (SEG)
IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Disordered region (IsUnstruct)
*********ISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS**
Disordered Region (DISOPRED)
*******NNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLC*S**
Disordered Region (DISEMBL)
IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Disordered Region (DISPRO)
IR****KNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVV*ILWLGLQSEFKLCL**L
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q971U6	472	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.874	0.25	0.520	1e-27
B0K3S3	488	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.233	0.546	1e-27
Q83BM9	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.236	0.504	2e-27
A9N8Z4	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.236	0.504	2e-27
A9KBI0	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.236	0.504	2e-27
B6IZ25	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.236	0.504	2e-27
B6J4H5	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.844	0.236	0.504	2e-27
A6TTJ8	491	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.829	0.228	0.508	2e-27
Q8DK65	482	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.770	0.215	0.536	3e-27
B7KLL5	483	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.8	0.223	0.508	6e-27

>sp|Q971U6|GATA_SULTO Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=gatA PE=3 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 5   INKNNISIREVTEKCLSRIEEVSK-LNAFITV-TKNEALCKATEIVKDEKTMLQGVTVAI 62
           +NKN + I E  E+   RIE++ K + AFIT+  K E   +  E +K+ K  L G+ +AI
Sbjct: 10  LNKN-LDIDEYVERTYERIEKIEKKIKAFITIRDKEEVKREVREKLKNPKGKLSGILIAI 68

Query: 63  KDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWL 122
           KDN  T+GI TTCAS+MLE+++ PYDATV+EKLKQ GA+I+GKTNMDEFAMG      + 
Sbjct: 69  KDNISTKGIRTTCASRMLEDYVPPYDATVIEKLKQEGAVILGKTNMDEFAMGSTTETSYF 128

Query: 123 G 123
           G
Sbjct: 129 G 129

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/119 (54%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATE----IVKDEKTML 55
           +R  + K  +S  EVT+  L RI+EV  K++A +T+T++ AL KA E    I K E T L
Sbjct: 11  LRELLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEADEKIKKGEDTAL 70

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ V IKDN  T GI TTC+SKMLEN+I PY+ATVVEKL + G II+GK+N+DEFAMG
Sbjct: 71  TGIPVIIKDNISTEGIKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFAMG 129

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q83BM9|GATA_COXBU Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=gatA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKA----TEIVKDEKTML 55
           ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct: 9   LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct: 69  TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9N8Z4|GATA_COXBR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKA----TEIVKDEKTML 55
           ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct: 9   LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct: 69  TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain RSA 331 / Henzerling II) (taxid: 360115)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9KBI0|GATA_COXBN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKA----TEIVKDEKTML 55
           ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct: 9   LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct: 69  TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B6IZ25|GATA_COXB2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuG_Q212) GN=gatA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKA----TEIVKDEKTML 55
           ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct: 9   LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct: 69  TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B6J4H5|GATA_COXB1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuK_Q154) GN=gatA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKA----TEIVKDEKTML 55
           ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct: 9   LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct: 69  TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A6TTJ8|GATA_ALKMQ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 10/122 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK------- 52
           IR    +   ++++V +  + RI+E+  K+NAFIT+ +  AL +A   V DEK       
Sbjct: 11  IRKGYVQKQFTVKDVVQGYIDRIKELDGKINAFITLCEESALMEAA--VLDEKLSRGEEI 68

Query: 53  TMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
            +L G+ VAIKDN CT+GI T+CAS+ML +FI PYDAT+V+KL+ +GAII+GKTNMDEFA
Sbjct: 69  GLLGGIPVAIKDNMCTQGIKTSCASEMLADFIPPYDATIVKKLRAAGAIIIGKTNMDEFA 128

Query: 113 MG 114
           MG
Sbjct: 129 MG 130

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8DK65|GATA_THEEB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 11  SIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVK-----DEKTMLQGVTVAIKD 64
           S  E+T+  L RI +V   L++F+TVT++ AL +A E+ K     +E  +L G+ +AIKD
Sbjct: 17  SATEITQAYLDRIAQVEPTLHSFLTVTRDRALAQAAEVDKRLAAGEEIGLLTGIPLAIKD 76

Query: 65  NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           N CT G+ TTCASKMLE+F+ PY++TV EKL+ +GAI+VGKTN+DEFAMG
Sbjct: 77  NLCTYGVRTTCASKMLEHFVPPYESTVTEKLQAAGAIMVGKTNLDEFAMG 126

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B7KLL5|GATA_CYAP7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1

 Score =  119 bits (298), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/114 (50%), Positives = 82/114 (71%), Gaps = 6/114 (5%)

Query: 7   KNNISIREVTEKCLSRIEEVSKL-NAFITVTKNEALCKATEI-----VKDEKTMLQGVTV 60
           K   S  E+T + L RIE++  L ++F+ +T ++AL  A ++      K+E  +L+G+ V
Sbjct: 13  KKERSAVEITTEALDRIEKLEPLLHSFLHITADQALESAKKVDAKIAAKEEIGLLEGIPV 72

Query: 61  AIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            IKDN CT+GIPTTC SK+LENF+ PY++TV +KLK SGAI +GKTN+DEFAMG
Sbjct: 73  GIKDNMCTQGIPTTCGSKILENFVPPYESTVTQKLKDSGAITLGKTNLDEFAMG 126

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
225181781	491	glutamyl-tRNA(Gln) amidotransferase, A s	0.8	0.219	0.550	2e-27
334117987	488	LOW QUALITY PROTEIN: Amidase [Microcoleu	0.829	0.229	0.495	1e-26
284162409	453	glutamyl-tRNA(Gln) amidotransferase subu	0.807	0.240	0.551	2e-26
317132012	484	glutamyl-tRNA(Gln) amidotransferase subu	0.755	0.210	0.571	2e-26
297544113	488	glutamyl-tRNA(Gln) amidotransferase subu	0.844	0.233	0.554	2e-26
289577828	488	glutamyl-tRNA(Gln) amidotransferase subu	0.844	0.233	0.554	3e-26
428317872	486	aspartyl/glutamyl-tRNA(Asn/Gln) amidotra	0.829	0.230	0.487	3e-26
444921073	481	Glutamyl-tRNA(Gln) amidotransferase subu	0.844	0.237	0.529	5e-26
194745218	508	GF16420 [Drosophila ananassae] gi|190628	0.8	0.212	0.522	5e-26
345017077	488	glutamyl-tRNA(Gln) amidotransferase subu	0.844	0.233	0.554	6e-26

>gi|225181781|ref|ZP_03735219.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Dethiobacter alkaliphilus AHT 1] gi|225167555|gb|EEG76368.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Dethiobacter alkaliphilus AHT 1]

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 83/118 (70%), Gaps = 10/118 (8%)

Query: 5   INKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKDEKTM-------LQ 56
           +N   IS RE+TE  LSRI+ V + + A++TVT+ EAL KA +I  D K +       L 
Sbjct: 14  LNNKEISSRELTEAVLSRIDSVEETIKAYVTVTRQEALAKAAQI--DAKRLNGEKLGPLA 71

Query: 57  GVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           G+ VA+KDN CT GI TTC+SKML NF+ PYDATV E L+ +G ++VGKTNMDEFAMG
Sbjct: 72  GIPVALKDNMCTNGILTTCSSKMLHNFLPPYDATVTELLQDAGTVLVGKTNMDEFAMG 129

Source: Dethiobacter alkaliphilus AHT 1

Species: Dethiobacter alkaliphilus

Genus: Dethiobacter

Family: Syntrophomonadaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|334117987|ref|ZP_08492077.1| LOW QUALITY PROTEIN: Amidase [Microcoleus vaginatus FGP-2] gi|333459972|gb|EGK88582.1| LOW QUALITY PROTEIN: Amidase [Microcoleus vaginatus FGP-2]

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 86/119 (72%), Gaps = 7/119 (5%)

Query: 2   RHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEI-----VKDEKTML 55
           R  +NK   ++ E+T++ L RI ++  KL +F+ VT + AL +A ++       ++  +L
Sbjct: 9   RQLVNKERSAV-EITQETLDRITQLEPKLKSFLCVTADSALAQAHKVDAQIAAGEQIGLL 67

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A+KDN CT G+PTTCAS++LENF+ PYDATVV KL+ +GA+IVGKTNMDEFAMG
Sbjct: 68  AGIPIAVKDNMCTEGVPTTCASRILENFVPPYDATVVSKLQAAGAVIVGKTNMDEFAMG 126

Source: Microcoleus vaginatus FGP-2

Species: Microcoleus vaginatus

Genus: Microcoleus

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|284162409|ref|YP_003401032.1| glutamyl-tRNA(Gln) amidotransferase subunit alpha [Archaeoglobus profundus DSM 5631] gi|284012406|gb|ADB58359.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Archaeoglobus profundus DSM 5631]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 80/116 (68%), Gaps = 7/116 (6%)

Query: 16  TEKCLSRIEEV------SKLNAFITVTKNEALCKATEIVKDE-KTMLQGVTVAIKDNFCT 68
           +E+C   I E+      SKLNAFIT+ K EAL KA E  K + K  L G+ VA+KDN  T
Sbjct: 12  SERCYDLIAELFERIERSKLNAFITLNKEEALKKAEEFDKGKLKGKLAGIPVAVKDNIST 71

Query: 69  RGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGL 124
           +G+ TTCASKML N++ P+DA VVE+LKQ GAII+GKTNMDEFAMG      + G+
Sbjct: 72  KGLRTTCASKMLANYVPPFDAHVVERLKQEGAIIIGKTNMDEFAMGTTTETSYFGV 127

Source: Archaeoglobus profundus DSM 5631

Species: Archaeoglobus profundus

Genus: Archaeoglobus

Family: Archaeoglobaceae

Order: Archaeoglobales

Class: Archaeoglobi

Phylum: Euryarchaeota

Superkingdom: Archaea

>gi|317132012|ref|YP_004091326.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Ethanoligenens harbinense YUAN-3] gi|315469991|gb|ADU26595.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Ethanoligenens harbinense YUAN-3]

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 10/112 (8%)

Query: 11  SIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM-------LQGVTVAI 62
           S  E+ E  L+RIE V  ++ AF+TVTK EAL +A E  +D K         L GV VA+
Sbjct: 21  SAVEIAEAHLARIEAVDERVGAFLTVTKEEALARAAE--QDRKLAAGEPLGALSGVPVAV 78

Query: 63  KDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           KDN CT+G+ TTCASKML NF  PYDATV +KL+++GA++VGKTNMDEFAMG
Sbjct: 79  KDNICTKGVRTTCASKMLHNFTPPYDATVADKLREAGAVMVGKTNMDEFAMG 130

Source: Ethanoligenens harbinense YUAN-3

Species: Ethanoligenens harbinense

Genus: Ethanoligenens

Family: Ruminococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|297544113|ref|YP_003676415.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841888|gb|ADH60404.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 85/119 (71%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTML 55
           +R  + K  +S  EVT+  L RI+EV  K++A IT+T++ AL KA E    I K E T L
Sbjct: 11  LRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQKAKEADEKIKKGEDTAL 70

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ V IKDN  T GI TTC+SKMLEN+I PY+ATVVEKL + GA+I+GK+N+DEFAMG
Sbjct: 71  TGIPVIIKDNISTEGIKTTCSSKMLENYIPPYNATVVEKLLEEGAVILGKSNLDEFAMG 129

Source: Thermoanaerobacter mathranii subsp. mathranii str. A3

Species: Thermoanaerobacter mathranii

Genus: Thermoanaerobacter

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|289577828|ref|YP_003476455.1| glutamyl-tRNA(Gln) amidotransferase subunit alpha [Thermoanaerobacter italicus Ab9] gi|289527541|gb|ADD01893.1| glutamyl-tRNA(Gln) amidotransferase, A subunit [Thermoanaerobacter italicus Ab9]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 85/119 (71%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTML 55
           +R  + K  +S  EVT+  L RI+EV  K++A IT+T++ AL KA E    I K E T L
Sbjct: 11  LRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQKAKEADEKIKKGEYTAL 70

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ V IKDN  T GI TTC+SKMLEN+I PY+ATVVEKL + GA+I+GK+N+DEFAMG
Sbjct: 71  TGIPVIIKDNISTEGIKTTCSSKMLENYIPPYNATVVEKLLEEGAVILGKSNLDEFAMG 129

Source: Thermoanaerobacter italicus Ab9

Species: Thermoanaerobacter italicus

Genus: Thermoanaerobacter

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|428317872|ref|YP_007115754.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Oscillatoria nigro-viridis PCC 7112] gi|428241552|gb|AFZ07338.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Oscillatoria nigro-viridis PCC 7112]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/119 (48%), Positives = 85/119 (71%), Gaps = 7/119 (5%)

Query: 2   RHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEI-----VKDEKTML 55
           R  +NK   ++ E+T++ L RI ++  KL +F+ VT + AL +A ++       ++  +L
Sbjct: 9   RQLVNKERSAV-EITQEALDRITQLEPKLKSFLCVTADSALAQAHQVDAQIAAGEQIGLL 67

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A+KDN CT G+PTTCAS++LENF+ PYDATVV KL+ +GA+IVGK NMDEFAMG
Sbjct: 68  AGIPIAVKDNMCTEGVPTTCASRILENFVPPYDATVVSKLQAAGAVIVGKANMDEFAMG 126

Source: Oscillatoria nigro-viridis PCC 7112

Species: Oscillatoria nigro-viridis

Genus: Oscillatoria

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|444921073|ref|ZP_21240911.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Wohlfahrtiimonas chitiniclastica SH04] gi|444507809|gb|ELV07983.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Wohlfahrtiimonas chitiniclastica SH04]

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/119 (52%), Positives = 83/119 (69%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIE-EVSKLNAFITVTKNEALCKATE----IVKDEKTML 55
           +R A++   +S  EV E   + IE    K+N+FIT T + AL +A +    I K E+ ML
Sbjct: 9   LREALDTKEVSSVEVLEHFKTEIETHDQKINSFITKTYDHALAQAQKADEAIAKGEQKML 68

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ +A KD FCT+GI TT ASKMLENF++PYDATVVEKL Q+G +++GK NMDEFAMG
Sbjct: 69  TGIPIAHKDLFCTKGIKTTAASKMLENFVSPYDATVVEKLDQAGVMVLGKVNMDEFAMG 127

Source: Wohlfahrtiimonas chitiniclastica SH04

Species: Wohlfahrtiimonas chitiniclastica

Genus: Wohlfahrtiimonas

Family: Xanthomonadaceae

Order: Xanthomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|194745218|ref|XP_001955085.1| GF16420 [Drosophila ananassae] gi|190628122|gb|EDV43646.1| GF16420 [Drosophila ananassae]

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 5/113 (4%)

Query: 7   KNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVK-----DEKTMLQGVTVA 61
           +  +S R +TE  L   + +  LNAF+ +T  +AL  A + +K       K  L GVT+A
Sbjct: 18  EGQLSPRRLTELALEDAKNLKTLNAFVRLTPEKALQAAEDSLKRYQNKKPKGTLDGVTIA 77

Query: 62  IKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           IKDNFCT GIPTTCASKML++F+ PYDATV  +LK++GA+++GKTNMD+FAMG
Sbjct: 78  IKDNFCTEGIPTTCASKMLQDFVPPYDATVCSRLKKAGAVLLGKTNMDQFAMG 130

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345017077|ref|YP_004819430.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Thermoanaerobacter wiegelii Rt8.B1] gi|344032420|gb|AEM78146.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Thermoanaerobacter wiegelii Rt8.B1]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 84/119 (70%), Gaps = 5/119 (4%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATE----IVKDEKTML 55
           +R  + K  +S  EVT+  L RI+EV  K++A IT+T++ AL KA E    I K E T L
Sbjct: 11  LRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQKAKEADEKIKKGEDTAL 70

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+ V IKDN  T GI TTC+SKMLEN+I PY+ATVVEKL + G II+GK+N+DEFAMG
Sbjct: 71  TGIPVIIKDNISTEGIKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFAMG 129

Source: Thermoanaerobacter wiegelii Rt8.B1

Species: Thermoanaerobacter wiegelii

Genus: Thermoanaerobacter

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TIGR_CMR|CBU_1474	483	CBU_1474 "glutamyl-tRNA(Gln) a	0.844	0.236	0.504	2.2e-25
TIGR_CMR|CHY_1102	485	CHY_1102 "glutamyl-tRNA(Gln) a	0.829	0.230	0.532	6.4e-24
TIGR_CMR|GSU_3381	485	GSU_3381 "glutamyl-tRNA(Gln) a	0.8	0.222	0.557	1.1e-23
UNIPROTKB|Q9H0R6	528	QRSL1 "Glutamyl-tRNA(Gln) amid	0.822	0.210	0.5	1.9e-23
UNIPROTKB|E2QUD0	526	QRSL1 "Glutamyl-tRNA(Gln) amid	0.822	0.211	0.491	2.4e-23
UNIPROTKB|F1RT46	526	LOC100737502 "Glutamyl-tRNA(Gl	0.822	0.211	0.491	3.1e-23
RGD|1359490	525	Qrsl1 "glutaminyl-tRNA synthas	0.844	0.217	0.478	4e-23
UNIPROTKB|F1MYR8	526	QRSL1 "Glutamyl-tRNA(Gln) amid	0.822	0.211	0.482	6.7e-23
MGI|MGI:1923813	525	Qrsl1 "glutaminyl-tRNA synthas	0.822	0.211	0.482	1.1e-22
FB|FBgn0260779	508	gatA "glutamyl-tRNA amidotrans	0.777	0.206	0.509	1.3e-22

TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 292 (107.8 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/119 (50%), Positives = 84/119 (70%)

Query:     1 IRHAINKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKA----TEIVKDEKTML 55
             ++  +    IS  E+T+  L RI+ ++  LN+FI++T+  AL +A      + K E T L
Sbjct:     9 LKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARLAKGEATSL 68

Query:    56 QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              G+ +A KD FCT+ I T+C SKML+NFIAPYDATVVE+L ++GAI++GKTNMDEFAMG
Sbjct:    69 TGIPIAQKDIFCTKDIKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMG 127

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 6.4e-24, P = 6.4e-24
 Identities = 65/122 (53%), Positives = 78/122 (63%)

Query:     1 IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTM----- 54
             I   I    IS  EV +    RIE V  K+ A++TVT+   L  A E+  DEK       
Sbjct:    11 ITEKIKAKEISAVEVAKATFDRIEAVEPKIQAYVTVTRELGLKMAREV--DEKIARGEDP 68

Query:    55 --LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
               L GV VAIKDN  T GI TTC+SK+LEN+I PYDATVVEKLK++GA+  GKTN+DEFA
Sbjct:    69 GPLAGVPVAIKDNMSTAGIRTTCSSKILENYIPPYDATVVEKLKEAGAVFTGKTNLDEFA 128

Query:   113 MG 114
             MG
Sbjct:   129 MG 130

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|GSU_3381 GSU_3381 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 277 (102.6 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 63/113 (55%), Positives = 75/113 (66%)

Query:     7 KNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKAT----EIVKDEKTMLQGVTVA 61
             K  +S  E T   L+RIE   S++NA+ITVT +EAL  A      I     T L GV VA
Sbjct:    17 KREVSSVEATRALLARIEATDSRVNAYITVTPDEALAAAEAADRRIAAGGLTPLTGVPVA 76

Query:    62 IKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
             +KD F TRGI TTC SK+L NFI PYD TVV KL+++GA+IVGK N DEFAMG
Sbjct:    77 LKDIFVTRGIRTTCGSKILGNFIPPYDGTVVAKLREAGAVIVGKLNQDEFAMG 129

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q9H0R6 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 58/116 (50%), Positives = 80/116 (68%)

Query:     4 AINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGV 58
             A+ +  I+  E+ +KCLS I++   LNA+ITV++  AL +A E  K  K       L G+
Sbjct:    12 ALKQGQITPTELCQKCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKNGQSLGDLDGI 71

Query:    59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              +A+KDNF T GI TTCAS ML+ +I PY+ATVV+KL   GA+++GKTN+DEFAMG
Sbjct:    72 PIAVKDNFSTSGIETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFAMG 127

GO:0005524 "ATP binding" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IMP

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IDA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IDA

UNIPROTKB|E2QUD0 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 57/116 (49%), Positives = 80/116 (68%)

Query:     4 AINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGV 58
             A+ +  I+  E+ +KCLS I++   LNA+ITV++  AL +A E  K  K       L G+
Sbjct:    12 ALKQGQITPTELCQKCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKKGHSLGDLDGI 71

Query:    59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              +A+KDNF T GI TTCAS ML+ ++ PY+ATVV+KL   GA+++GKTN+DEFAMG
Sbjct:    72 PIAVKDNFSTSGIETTCASNMLKGYVPPYNATVVQKLLDQGAVLMGKTNLDEFAMG 127

GO:0005739 "mitochondrion" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RT46 LOC100737502 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 57/116 (49%), Positives = 80/116 (68%)

Query:     4 AINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGV 58
             A+ +  I+  E+ +KCLS I++   LNA+ITV++  AL +A E  K  K       L G+
Sbjct:    12 ALKQGQITPTELCQKCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKEGHSLGDLDGI 71

Query:    59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              +A+KDNF T GI TTCAS ML+ ++ PY+ATVV+KL   GA+++GKTN+DEFAMG
Sbjct:    72 PIAVKDNFSTSGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMG 127

GO:0005739 "mitochondrion" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1359490 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 57/119 (47%), Positives = 82/119 (68%)

Query:     1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----L 55
             +  A+ + +I+  E+ +KCLS I++   LNA+ITV++  AL +A E  K  K       L
Sbjct:     9 VSSALKQGHITPTELCKKCLSLIKKTKYLNAYITVSEEVALKQAEESEKRYKQGQSLGDL 68

Query:    56 QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              G+ VA+KDNF T GI TTCAS ML+ ++ PY+ATVV++L   GA+++GKTN+DEFAMG
Sbjct:    69 DGIPVAVKDNFSTSGIETTCASNMLKGYLPPYNATVVQRLLDQGALLMGKTNLDEFAMG 127

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA;ISO

GO:0032543 "mitochondrial translation" evidence=IEA;ISO

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISO

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA;ISO

UNIPROTKB|F1MYR8 QRSL1 "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 56/116 (48%), Positives = 80/116 (68%)

Query:     4 AINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGV 58
             A+ +  I+  E+ ++CLS I++   LNA+ITV++  AL +A E  K  K       L G+
Sbjct:    12 ALKQGQITPTELCQRCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKKGHSLGDLDGI 71

Query:    59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              +A+KDNF T GI TTCAS ML+ ++ PY+ATVV+KL   GA+++GKTN+DEFAMG
Sbjct:    72 PIAVKDNFSTSGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMG 127

GO:0005739 "mitochondrion" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1923813 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 56/116 (48%), Positives = 79/116 (68%)

Query:     4 AINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGV 58
             A+ +  ++  E+ + CLS I++   LNA+ITV++  AL +A E  K  K       L G+
Sbjct:    12 ALKQGQVTPTELCKNCLSLIKKTKYLNAYITVSEEVALKQAEESEKRYKQGQSLGDLDGI 71

Query:    59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
              VA+KDNF T GI TTCAS ML+ ++ PY+ATVV+KL   GA+++GKTN+DEFAMG
Sbjct:    72 PVAVKDNFSTTGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMG 127

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=ISO

GO:0032543 "mitochondrial translation" evidence=ISO

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISO

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=ISO

FB|FBgn0260779 gatA "glutamyl-tRNA amidotransferase subunit A" [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 56/110 (50%), Positives = 75/110 (68%)

Query:    10 ISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM-----LQGVTVAIKD 64
             +S R VTE  L        LNAF+ +T  +A  +A +  +  K       L GVT+AIKD
Sbjct:    21 LSPRRVTEDALQDALRWKTLNAFVRLTPEQAGQQAQDAEQRYKLRQPISDLDGVTIAIKD 80

Query:    65 NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
             NFCT+ + TTCAS+ML++F+ PYDATV  +LKQ+GA+I+GKTNMD+FAMG
Sbjct:    81 NFCTKDVHTTCASRMLQDFVPPYDATVCSRLKQAGAVILGKTNMDQFAMG 130

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0030717 "karyosome formation" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9N8Z4	GATA_COXBR	6, ., 3, ., 5, ., -	0.5042	0.8444	0.2360	yes	N/A
A6TTJ8	GATA_ALKMQ	6, ., 3, ., 5, ., -	0.5081	0.8296	0.2281	yes	N/A
Q9VE09	GATA_DROME	6, ., 3, ., 5, ., -	0.5090	0.7777	0.2066	yes	N/A
Q83BM9	GATA_COXBU	6, ., 3, ., 5, ., -	0.5042	0.8444	0.2360	yes	N/A
Q971U6	GATA_SULTO	6, ., 3, ., 5, ., -	0.5206	0.8740	0.25	yes	N/A
B0K3S3	GATA_THEPX	6, ., 3, ., 5, ., -	0.5462	0.8444	0.2336	yes	N/A
A9KBI0	GATA_COXBN	6, ., 3, ., 5, ., -	0.5042	0.8444	0.2360	yes	N/A
Q7QH64	GATA_ANOGA	6, ., 3, ., 5, ., -	0.5566	0.7333	0.2012	yes	N/A
B7KLL5	GATA_CYAP7	6, ., 3, ., 5, ., -	0.5087	0.8	0.2236	yes	N/A
B9LZ18	GATA_GEOSF	6, ., 3, ., 5, ., -	0.5391	0.8148	0.2268	yes	N/A
B6J4H5	GATA_COXB1	6, ., 3, ., 5, ., -	0.5042	0.8444	0.2360	yes	N/A
Q3AD36	GATA_CARHZ	6, ., 3, ., 5, ., -	0.5327	0.8296	0.2309	yes	N/A
O27955	GATA_ARCFU	6, ., 3, ., 5, ., -	0.5446	0.8148	0.2407	yes	N/A
Q113L8	GATA_TRIEI	6, ., 3, ., 5, ., -	0.5090	0.7703	0.2144	yes	N/A
B0KBN4	GATA_THEP3	6, ., 3, ., 5, ., -	0.5378	0.8444	0.2336	yes	N/A
B8GL95	GATA_THISH	6, ., 3, ., 5, ., -	0.5344	0.8222	0.2293	yes	N/A
B6IZ25	GATA_COXB2	6, ., 3, ., 5, ., -	0.5042	0.8444	0.2360	yes	N/A
A5ICP2	GATA_LEGPC	6, ., 3, ., 5, ., -	0.5130	0.8222	0.2298	yes	N/A
Q0VFI5	GATA_XENTR	6, ., 3, ., 5, ., -	0.5338	0.8074	0.2080	yes	N/A
Q8DK65	GATA_THEEB	6, ., 3, ., 5, ., -	0.5363	0.7703	0.2157	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	5e-57
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	2e-47
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	2e-45
pfam01425	431	pfam01425, Amidase, Amidase	8e-42
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	2e-27
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	4e-24
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	1e-23
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	7e-21
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	2e-20
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	4e-20
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	8e-19
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	8e-19
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	2e-18
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	1e-16
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	3e-16
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	3e-16
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	5e-16
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	6e-16
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	1e-15
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	3e-15
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	1e-14
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	5e-14
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	4e-13
PRK05962	424	PRK05962, PRK05962, amidase; Validated	2e-12
PRK06565	566	PRK06565, PRK06565, amidase; Validated	6e-12
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	1e-11
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	2e-10
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	2e-10
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	3e-08

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  183 bits (466), Expect = 5e-57
 Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 5/115 (4%)

Query: 5   INKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGVT 59
           +    IS  E+T+  L RIEEV  KLNAFITVT+ EAL +A      +   E   L G+ 
Sbjct: 1   LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEAGPLAGIP 60

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           +AIKDN CT+GI TTCASK+LEN++ PYDATVVEKLK +GA+I+GKTNMDEFAMG
Sbjct: 61  IAIKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMG 115

Length = 459

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  158 bits (401), Expect = 2e-47
 Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           +R  + K  ISI+EV E  L RIE    K+NAF+ VT  +AL +A ++ K   T L G+ 
Sbjct: 1   LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIP 60

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           +A+KDN  T+GI TTCASK+LEN+I PYDATV+E+LKQ+GA+I+GKTNMDEFAMG
Sbjct: 61  IAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMG 115

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  153 bits (389), Expect = 2e-45
 Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 8/124 (6%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM----- 54
           +   +    +S  E+ E  L+RIE +   LNAF+ V    AL  A     D +       
Sbjct: 12  LAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPL 71

Query: 55  --LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
             L GV +A+KDN  T G+PTT  SK LE+++ PYDATVVE+L+ +GA+I+GKTNMDEFA
Sbjct: 72  GPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFA 131

Query: 113 MGLV 116
           MG  
Sbjct: 132 MGSS 135

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  142 bits (361), Expect = 8e-42
 Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 5/108 (4%)

Query: 14  EVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEI----VKDEKTMLQGVTVAIKDNFCT 68
           E+ E  L R E    KLNAF+TV   EAL +A        + EK  L GV +++KDN   
Sbjct: 1   ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKGPLHGVPISLKDNIDV 60

Query: 69  RGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLV 116
           +G+PTT  SK LE +  PYDATVVE+L+ +GA+I+GKTNMDEFAMG  
Sbjct: 61  KGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGST 108

Length = 431

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  104 bits (262), Expect = 2e-27
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 2   RHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT----MLQG 57
             A+    +S  E+ E  L+R   ++ LNAF TV    AL  A  I          +L G
Sbjct: 17  AAALRSGRLSCLELVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAG 76

Query: 58  VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           V + IKDN  T G+PTT  +  L  F+   DA VV++L  +GA+ +GK NM E A G
Sbjct: 77  VPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFG 133

Length = 472

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score = 95.8 bits (239), Expect = 4e-24
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKT-----M 54
           I  A+    +S R V +  L+RI   + +LNAF  VT   AL +A  I            
Sbjct: 12  IAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGP 71

Query: 55  LQGVTVAIKDNFCTRGIPTTCASKML-ENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           L GV  A+K+ F   G+ T   SK+  +   A  DAT V +L+ +GA++VG  NMDE+A 
Sbjct: 72  LAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAY 131

Query: 114 GLV 116
           G  
Sbjct: 132 GFT 134

Length = 465

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score = 94.5 bits (236), Expect = 1e-23
 Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSKLNAFIT-VTKNEALCKATEI-VKDEKTM-LQG 57
           +R A     ++ R V     +RI  V     +I    + + L +A  +  +D   + L G
Sbjct: 12  LRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYG 71

Query: 58  VTVAIKDNFCTRGIPTTCASKMLENFIAP---Y----DATVVEKLKQSGAIIVGKTNMDE 110
           V  A+KDN    G+PTT A         P   Y    DATVV +L+ +GAI++GKTN+D+
Sbjct: 72  VPFAVKDNIDVAGLPTTAA--------CPAFAYTPERDATVVARLRAAGAIVIGKTNLDQ 123

Query: 111 FAMGLV-VR 118
           FA GLV  R
Sbjct: 124 FATGLVGTR 132

Length = 600

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 86.6 bits (215), Expect = 7e-21
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 6/116 (5%)

Query: 4   AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVK-----DEKTMLQG 57
           A+   ++S RE  E  L+R++ V+  +NA +     EAL +A  +       D+   L G
Sbjct: 16  AVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAG 75

Query: 58  VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           V V +K N    G  TT   ++ ++ IAP D+ VV+ L+++GA+I+G+TN   F+ 
Sbjct: 76  VPVTVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSY 131

Length = 469

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKD-----EKTM 54
           I  AI    +S R V E  L+RI +    LNAF  VT   AL  A  I  D         
Sbjct: 5   IAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGP 64

Query: 55  LQGVTVAIKDNFCTRGIPTTCASKM-LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           L GV  A+K+ F   G+ T   +K+  +   A  DAT+V++L  +GA++VG  NMDEFA 
Sbjct: 65  LAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAY 124

Query: 114 GLV 116
           G  
Sbjct: 125 GFT 127

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 4   AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTM-------L 55
           AI +  +S  EV    L+ IE V+  +NA + +   +AL  A    KD           L
Sbjct: 20  AIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDAL-LAEAAEKDAALARGEYRGWL 78

Query: 56  QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            G+  A KD   T+GI TT  S +  + +   DA VVE+++ +GAI +GKTN  EF +G
Sbjct: 79  HGMPQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLG 137

Length = 484

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score = 80.7 bits (199), Expect = 8e-19
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 10  ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKAT----EIVKDEKTMLQGVTVAIKD 64
           ++   + E  L RIE + S L A+  V  + A  +A      +   E+  L GV +AIKD
Sbjct: 23  LTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERLPLLGVPIAIKD 82

Query: 65  NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           +    G  TT  S       A  DA VV +L+ +GA+I+GKTN+ E  +
Sbjct: 83  DVDVAGEVTTYGSAG-HGPAATSDAEVVRRLRAAGAVIIGKTNVPELMI 130

Length = 462

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 4   AINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGV 58
           A+    +S  E+T+  ++RIE    K+NA +    + A   A        + E+  L G+
Sbjct: 20  ALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGI 79

Query: 59  TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNM 108
            V +K++F   G+PTT     L +++   DA  V +LK +GA+I+GKTN+
Sbjct: 80  PVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNV 129

Length = 490

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 55  LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           L GV  A+KDN    G+PTT A      +    DATVV  L+ +GAI+VGKTN+D+FA G
Sbjct: 32  LYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVVGKTNLDQFATG 90

Query: 115 LV 116
           LV
Sbjct: 91  LV 92

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 32/78 (41%), Positives = 42/78 (53%)

Query: 37  KNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLK 96
           KN A+    +   ++   L      IKDNF T   PT  +SK LENF   Y+ATVV+KL 
Sbjct: 19  KNNAVSYVFDEKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVVQKLI 78

Query: 97  QSGAIIVGKTNMDEFAMG 114
            +GA  V K + DE  +G
Sbjct: 79  NAGAKPVAKVHCDELGLG 96

Length = 439

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 10  ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGVTVAIKD 64
           ++  E+  + L RIE     LNAF  V    AL +A E        ++  L GV +A+KD
Sbjct: 32  VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKD 91

Query: 65  NFCTRGIPTT--CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
           +    G+PT    A    E   A  D+ VV +L+ +GA+IVGKTN  E 
Sbjct: 92  DVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137

Length = 483

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 14  EVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKDEKTM-------LQGVTVAIKDN 65
           E T+  L RI+     +NAF  V    AL  A     +E+         L GV V+IKD 
Sbjct: 25  EATQAVLDRIDRRDPAVNAFCLVDAEGALAAARA--SEERWRRGEPCGLLDGVPVSIKDI 82

Query: 66  FCTRGIPTTCASKMLENFIAPY--DATVVEKLKQSGAIIVGKTNMDEFA 112
           F TRG PT   S+   +   P+  DA  V +L+++GA+++GKT   EF 
Sbjct: 83  FLTRGWPTLRGSR-AIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFG 130

Length = 466

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 55  LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           L G TVA+KDN    G+P    S  LE F+  +DATVV +L  +GA IVGK   ++   
Sbjct: 88  LAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCF 146

Length = 502

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)

Query: 14  EVTEKCLSRIEEVSKLNAFITVTKNEALCKA---TEIVKDEKT--MLQGVTVAIKDNFCT 68
           +V E+ L  I   +    FI++T+  A+ +A   +   +  ++  +L G+ +A KD F  
Sbjct: 24  QVAEQALDAIASYADQAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV 83

Query: 69  RGIPTTCASKMLENFI-APYDATVVEKLKQSGAIIVGKTNMDEFA 112
            G  TT  S +L N   A  DA VV  L ++G + +G+TNM EFA
Sbjct: 84  AGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFA 128

Length = 452

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 11  SIREVTEKCLSRIEEVSKLNA--FITVTKNEALCKATEI-----VKDEKTMLQGVTVAIK 63
           + R + E  L+RI + +   A  F  V  + A   A             + L G+ V++K
Sbjct: 21  TSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVK 80

Query: 64  DNFCTRGIPTTCASKMLE-NFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           D F   G  T   S++L     A  DA  V +L+++GA+++G+TNM EFA
Sbjct: 81  DLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFA 130

Length = 454

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 8   NNISIREVTEKCLSRIEEVS----KLNAFITVTKNEALCKATEI---VKDEKTM--LQGV 58
                 ++T   L RI  +     +LNA I +  + A   A  +    K  K    L G+
Sbjct: 18  GAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGI 76

Query: 59  TVAIKDNF-CTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
            V +KDN      +PTT  S  L       DA +V +L+ +GA+I+GK N+ E+A
Sbjct: 77  PVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWA 131

Length = 497

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 8/122 (6%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSK----LNAFITVTKNEALCKATEIVKDE---KT 53
           ++  I    +S +E+    L+RI++  +    LNA IT      + +A ++ K+    K+
Sbjct: 170 LQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNA-ITEINPTIIAEAEQLDKENTTNKS 228

Query: 54  MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
            L G+ V +KDN  T+ +PT+  +  L++++   DAT+VE LK +GA+I+GKTNM E+A 
Sbjct: 229 ALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAA 288

Query: 114 GL 115
           G+
Sbjct: 289 GM 290

Length = 615

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 67.2 bits (164), Expect = 5e-14
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 8/120 (6%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSK----LNAFITVTKN---EALCKATEIVKDEKT 53
           ++  I+   +S  E+T   L RI+E  +    LN+   +  N   EA     E  +++K+
Sbjct: 76  LQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEARKLDQERSRNKKS 135

Query: 54  MLQGVTVAIKDNFCT-RGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
            L G+ V +KDN  T + +PT+  + +L+++IA  DAT+V++LK+ GA ++GK NM E+A
Sbjct: 136 NLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWA 195

Length = 536

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 14  EVTEKCLSRIEEVS-KLNAFITVTKNEAL--CKATEI--VKDE-KTMLQGVTVAIKDNFC 67
           EVTE  L+ I      LNA        A    +A+     K E    L GV V IK+N  
Sbjct: 25  EVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIA 84

Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           TRG+P    +   +   A  DA    +L+++GA+I+ KT M ++ M
Sbjct: 85  TRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGM 130

Length = 464

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 55  LQGVTVAIKDNFCTRGIPTTCASKMLENFI-APYDATVVEKLKQSGAIIVGKTNMDEFA 112
           L G  V+IKD F   G PT   S +  +   A  DA +V++L+ +GA+I+GKT+M EFA
Sbjct: 46  LDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFA 104

Length = 424

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV------SKLNAFITVTKNEALCKATEIVKDEKTM 54
           +R A+     +  E+ +  L+RI+        + LNA + V   +AL +A     D +  
Sbjct: 12  LRAALESGRTTAVELVKAYLARIDAYDGPATGTALNA-VVVRNPDALKEAEA--SDARRA 68

Query: 55  -------LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTN 107
                  L G+    KD++  +G+     S   ++ +A  DA  +E+L+ +GAI +GKTN
Sbjct: 69  RGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTN 128

Query: 108 MDEFAMG 114
           M   A G
Sbjct: 129 MPPMANG 135

Length = 566

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRI----EEVSKLNAFITVTKNEALCKATEIVKDEKT--- 53
           I+ A+    ++ +E+    L RI    ++  K+N+ + +   +A+  A  +  + K    
Sbjct: 18  IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINP-DAIFIAEALDHERKIKGV 76

Query: 54  --MLQGVTVAIKDNFCTRG-IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
              L G+ V +KDN  T   + T+  +  LE  I+  DA +V KL+++GA+I+GK NM E
Sbjct: 77  RGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTE 136

Query: 111 FAMGL 115
            A  +
Sbjct: 137 LANFM 141

Length = 491

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 5/111 (4%)

Query: 4   AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTM-LQGVTVA 61
           A+ +  ++  E+  + + + ++++  LNA ++    EAL +A +  +D       GV + 
Sbjct: 12  AVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQ--RDFSGKPFAGVPIF 69

Query: 62  IKD-NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
           +KD     +G  +T  S++ +N+ A      V++L+  G II+G++N  EF
Sbjct: 70  LKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEF 120

Length = 482

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 4   AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAI 62
           AI    +S  EV E  ++R E V+  LNA      + A  +A      +     GV   I
Sbjct: 23  AIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRA-ARPGSQGGFFSGVPTFI 81

Query: 63  KDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
           KDN    G+PT   S       A  D+    +   +G I +GKT + EF
Sbjct: 82  KDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEF 130

Length = 468

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 55  LQGVTVAIKDNFCTRGIPTTCAS--KMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           L G+  A+KD F   G  T C +   + E+ +A   A  VEKL  +GA  VGKT  DE A
Sbjct: 26  LAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELA 85

Query: 113 MGL 115
             L
Sbjct: 86  FSL 88

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK07042	464	amidase; Provisional	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK09201	465	amidase; Provisional	100.0
PRK07487	469	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK07869	468	amidase; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PRK06529	482	amidase; Provisional	100.0
PRK07486	484	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
PRK07056	454	amidase; Provisional	100.0
PRK06061	483	amidase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK06828	491	amidase; Provisional	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK06565	566	amidase; Validated	100.0
PRK05962	424	amidase; Validated	100.0
PRK07235	502	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PRK07139	439	amidase; Provisional	99.97
KOG1211|consensus	506		99.97
PRK08310	395	amidase; Provisional	99.97
KOG1212|consensus	560		99.96
PLN02722	422	indole-3-acetamide amidohydrolase	99.96

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=3.9e-43  Score=286.90  Aligned_cols=133  Identities=50%  Similarity=0.711  Sum_probs=128.8

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |++++++|++||+||++++++||+++ +.+|||+++++|+|+++|+++|.+++.||+||||+|||+|+++|++||+||..
T Consensus         1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~   80 (460)
T TIGR00132         1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKI   80 (460)
T ss_pred             ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChh
Confidence            68899999999999999999999999 99999999999999999999998766799999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|++|+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus        81 ~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~  134 (460)
T TIGR00132        81 LENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDR  134 (460)
T ss_pred             hccCCCCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999865

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK07042 amidase; Provisional

Probab=100.00  E-value=4.6e-43  Score=286.84  Aligned_cols=134  Identities=27%  Similarity=0.288  Sum_probs=127.5

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |++++++|++|++|+++++++||++. +.+|+|++++.|.|+++|+++|.++++     ||+||||+|||+|+++|++||
T Consensus        12 l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt   91 (464)
T PRK07042         12 LLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRGVPVP   91 (464)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCCcccC
Confidence            46789999999999999999999999 999999999999999999999976543     999999999999999999999


Q ss_pred             cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +||+.+.++++.+||++|++|+++|||++||||||||+|+.+|.|++||+|+||||+.+.
T Consensus        92 ~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~  151 (464)
T PRK07042         92 LGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQN  151 (464)
T ss_pred             CCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999998763

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=6.2e-43  Score=285.30  Aligned_cols=134  Identities=35%  Similarity=0.474  Sum_probs=127.1

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|+++++++||+++ +.+|+|+++++|+|+++|+++|.++++     ||+||||+|||+|+++|++||
T Consensus         5 l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt   84 (452)
T TIGR02715         5 IAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTL   84 (452)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeC
Confidence            47899999999999999999999999 999999999999999999999976543     899999999999999999999


Q ss_pred             cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +||+.+.++++ .+||++|+||+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus        85 ~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~  145 (452)
T TIGR02715        85 AGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRI  145 (452)
T ss_pred             cCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999987 7999999999999999999999999999999999999999999998763

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK09201 amidase; Provisional

Probab=100.00  E-value=7.3e-43  Score=285.80  Aligned_cols=133  Identities=33%  Similarity=0.449  Sum_probs=126.8

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|+++++++||+++ +.+|||+++++|+|+++|+++|.++++     ||+||||+|||+|+++|++||
T Consensus        12 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt   91 (465)
T PRK09201         12 IAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTL   91 (465)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccC
Confidence            46889999999999999999999999 999999999999999999999986543     999999999999999999999


Q ss_pred             cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +||+.+.++++ .+||++|++|+++|||++||||||||+++.++.|++||+|+||||+.+
T Consensus        92 ~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  151 (465)
T PRK09201         92 AGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTR  151 (465)
T ss_pred             cCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCC
Confidence            99999999988 699999999999999999999999999999999999999999999875

>PRK07487 amidase; Provisional

Probab=100.00  E-value=9.2e-43  Score=285.45  Aligned_cols=134  Identities=28%  Similarity=0.400  Sum_probs=127.6

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|.+++.     ||+||||+|||+|+++|++||
T Consensus        13 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt   92 (469)
T PRK07487         13 LAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNVDQAGFATT   92 (469)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecccccCCCccC
Confidence            46789999999999999999999999 999999999999999999999976532     999999999999999999999


Q ss_pred             cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +||+.+.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus        93 ~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~  152 (469)
T PRK07487         93 NGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLT  152 (469)
T ss_pred             cchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999998763

>PRK06170 amidase; Provisional

Probab=100.00  E-value=1.4e-42  Score=285.61  Aligned_cols=133  Identities=26%  Similarity=0.320  Sum_probs=127.3

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC   75 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~   75 (135)
                      |++++++|++|++|+++++++||+++ +.+|+|+++++|+|+++|+++|.+++.    ||+||||+|||+|+++|++||+
T Consensus        17 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~~v~G~~tt~   96 (490)
T PRK06170         17 LAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESFNVAGLPTTW   96 (490)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEecccccCCcccCC
Confidence            46889999999999999999999999 999999999999999999999986543    9999999999999999999999


Q ss_pred             ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ||+.+.++++.+||++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus        97 Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~  154 (490)
T PRK06170         97 GFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLAR  154 (490)
T ss_pred             CChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999865

>PRK07869 amidase; Provisional

Probab=100.00  E-value=1.4e-42  Score=284.30  Aligned_cols=132  Identities=27%  Similarity=0.279  Sum_probs=125.6

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |++++++|++|++|+++++++||+++ +.+|||+++++|+|+++|+++|.. ..||+||||+|||||+++|++||+||+.
T Consensus        20 l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~-~gpL~GvPi~vKD~~~v~G~~tt~Gs~~   98 (468)
T PRK07869         20 LAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQ-GGFFSGVPTFIKDNVDVAGLPTMHGSDA   98 (468)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCC-CCCcCCCeEEEecCcccCCcccCcccHh
Confidence            46789999999999999999999999 999999999999999999998742 3499999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        99 ~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~  152 (468)
T PRK07869         99 WTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDY  152 (468)
T ss_pred             hcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999875

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=4.2e-42  Score=281.33  Aligned_cols=134  Identities=31%  Similarity=0.371  Sum_probs=126.0

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|++++.     ||+||||+|||+|+++|++||
T Consensus        12 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt   91 (466)
T PRK06169         12 LLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRGWPTL   91 (466)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCCcccC
Confidence            46789999999999999999999999 999999999999999999999976532     899999999999999999999


Q ss_pred             cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +||+.+.++.+ .+||++|++|+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus        92 ~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~  152 (466)
T PRK06169         92 RGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLT  152 (466)
T ss_pred             ccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCC
Confidence            99999986766 7999999999999999999999999999999999999999999998763

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-42  Score=282.73  Aligned_cols=133  Identities=41%  Similarity=0.589  Sum_probs=126.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHH--HHHhhhhhhCC-----CCCcceEeeeccccCCCcc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALC--KATEIVKDEKT-----MLQGVTVAIKDNFCTRGIP   72 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~--~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~   72 (135)
                      |+++++++++|++|+++++++||++. +.+|+|+.+..|.++.  +|+++|++.+.     ||+||||+|||||+++|+|
T Consensus        12 l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~~G~~   91 (475)
T COG0154          12 LAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDTAGLP   91 (475)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeeccccCCCc
Confidence            46789999999999999999999999 9999999999998865  99999988753     8999999999999999999


Q ss_pred             cccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         73 TTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        73 tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ||+||+.+.+++|.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||..+
T Consensus        92 Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~  152 (475)
T COG0154          92 TTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLER  152 (475)
T ss_pred             cCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999765

>PRK06529 amidase; Provisional

Probab=100.00  E-value=4.1e-42  Score=282.36  Aligned_cols=132  Identities=21%  Similarity=0.273  Sum_probs=125.7

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeecc-ccCCCcccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDN-FCTRGIPTTCASK   78 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~-~~v~G~~tt~Gs~   78 (135)
                      |++++++|++|++|+++++++||++. +.+|+|+.+++|+|+++|+++|... .||+||||+|||| |+++|++||+||+
T Consensus         9 l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~-~PL~GvPi~vKD~~~~v~G~~tt~Gs~   87 (482)
T PRK06529          9 MAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSG-KPFAGVPIFLKDLGQELKGQLSTSGSR   87 (482)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccC-CCcCCCeEEEecCCcccCCCccCcchH
Confidence            46789999999999999999999999 9999999999999999999988532 4999999999998 7999999999999


Q ss_pred             cccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         79 MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        79 ~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      .+.++++.+||++|+|||++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus        88 ~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~  142 (482)
T PRK06529         88 LFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSR  142 (482)
T ss_pred             HhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999875

>PRK07486 amidase; Provisional

Probab=100.00  E-value=7.7e-42  Score=280.88  Aligned_cols=134  Identities=31%  Similarity=0.367  Sum_probs=125.7

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecCh-HHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTK-NEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT   73 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~-~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t   73 (135)
                      |++++++|++|++|+++++++||+++ +.+|+|++++. +.++++|+++|.++++     ||+||||+|||+|+++|++|
T Consensus        17 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~t   96 (484)
T PRK07486         17 LSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRT   96 (484)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccccCCcCc
Confidence            46789999999999999999999999 99999999977 4469999999976533     99999999999999999999


Q ss_pred             ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      |+||+.+.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus        97 t~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~  157 (484)
T PRK07486         97 TLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRS  157 (484)
T ss_pred             ccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998763

>PRK12470 amidase; Provisional

Probab=100.00  E-value=1.2e-41  Score=278.47  Aligned_cols=132  Identities=29%  Similarity=0.294  Sum_probs=124.9

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC   75 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~   75 (135)
                      |++++++|++|++|+++++++||++. +.+|+|+.+++|+|+++|+++|.++..    ||+||||+|||+|+++|++||+
T Consensus        14 l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~pL~GvPi~vKD~~~v~G~~tt~   93 (462)
T PRK12470         14 QARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERLPLLGVPIAIKDDVDVAGEVTTY   93 (462)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCCCcCCCeEEEecCcccCCceeCC
Confidence            46789999999999999999999999 999999999999999999999976533    8999999999999999999999


Q ss_pred             ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ||+.+ ++++.+||++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus        94 Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  150 (462)
T PRK12470         94 GSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNR  150 (462)
T ss_pred             CCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCC
Confidence            99985 5888999999999999999999999999999999999999999999999875

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-41  Score=277.04  Aligned_cols=131  Identities=27%  Similarity=0.352  Sum_probs=123.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTC   75 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~   75 (135)
                      |+++|++|++||+|+++++++||+++..+|+|+.+++|.|+++|+++|.+++.     ||+||||+|||+|+++|++||+
T Consensus        11 l~~~l~~g~~s~~ev~~~~l~ri~~~~~~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~   90 (452)
T PRK06102         11 LAVLIQSGALDPVQVAEQALDAIASYADQAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTA   90 (452)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhCCCCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCc
Confidence            46889999999999999999999988338999999999999999999987542     9999999999999999999999


Q ss_pred             ccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCc
Q psy10129         76 ASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLC  131 (135)
Q Consensus        76 Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~  131 (135)
                      ||+.+.++++ .+||++|+||+++|||++||||||||+++.+|.|++||+|+||||.
T Consensus        91 Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~  147 (452)
T PRK06102         91 GSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRST  147 (452)
T ss_pred             CChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCC
Confidence            9999999887 7999999999999999999999999999999999999999999986

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=2e-41  Score=276.73  Aligned_cols=130  Identities=53%  Similarity=0.726  Sum_probs=124.0

Q ss_pred             HHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhC----CCCCcceEeeeccccCCCccccccccc
Q psy10129          5 INKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK----TMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         5 l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~----~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|.+++    .||+||||+|||+|+++|++||+||..
T Consensus         1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~   80 (459)
T PRK00012          1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEAGPLAGIPIAIKDNICTKGIRTTCASKI   80 (459)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCCCCccCCeEEEEecccccCCCccCccCHh
Confidence            5789999999999999999999 99999999999999999999997653    399999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus        81 ~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~  135 (459)
T PRK00012         81 LENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERV  135 (459)
T ss_pred             hccCCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999998763

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=2.9e-41  Score=276.72  Aligned_cols=133  Identities=34%  Similarity=0.452  Sum_probs=125.9

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCA   76 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~G   76 (135)
                      |++++++|++|++|+++++++||++.+.+|+|+.+++|+|+++|+++|.+++.    +|+||||+|||+|+++|++||+|
T Consensus        16 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gL~GvPi~vKD~~~v~G~~tt~G   95 (472)
T PRK07488         16 AAAALRSGRLSCLELVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAGVPIVIKDNINTAGMPTTAG   95 (472)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCcCCEEEEcCHHHHHHHHHHHHHHHhcCCCCCcCceEEEEEcccccCCCccCcC
Confidence            46889999999999999999999988569999999999999999999987543    39999999999999999999999


Q ss_pred             cccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         77 SKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        77 s~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      |+.+.++++.+||++|+||+++|||++||||||||+|+.++.|++||+|+||||+.+
T Consensus        96 s~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~  152 (472)
T PRK07488         96 TPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPAR  152 (472)
T ss_pred             ChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999865

>PRK07056 amidase; Provisional

Probab=100.00  E-value=4.6e-41  Score=274.47  Aligned_cols=130  Identities=25%  Similarity=0.335  Sum_probs=122.8

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-c-CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-S-KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT   73 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~-~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t   73 (135)
                      |++++++|++|++|+++++++||+++ + .+|+|+++++|.|+++|+++|.+.+.     ||+||||+|||+|+++|++|
T Consensus        11 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~t   90 (454)
T PRK07056         11 LAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVT   90 (454)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCcc
Confidence            46889999999999999999999998 6 49999999999999999999976533     99999999999999999999


Q ss_pred             ccccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCC
Q psy10129         74 TCASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKL  130 (135)
Q Consensus        74 t~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~  130 (135)
                      |+||..+.++++ .+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||
T Consensus        91 t~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~  148 (454)
T PRK07056         91 RAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWR  148 (454)
T ss_pred             CCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCC
Confidence            999999999988 699999999999999999999999999999999999999999993

>PRK06061 amidase; Provisional

Probab=100.00  E-value=5.8e-41  Score=275.68  Aligned_cols=133  Identities=29%  Similarity=0.302  Sum_probs=122.9

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC   75 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~   75 (135)
                      |+++|++|++|++||++++++||++. +.+|+|+++++|+|+++|+++|+++++    ||+||||+|||+|+++|++||+
T Consensus        23 l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~  102 (483)
T PRK06061         23 QAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAF  102 (483)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecC
Confidence            46889999999999999999999999 999999999999999999999987643    9999999999999999999999


Q ss_pred             ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      ||... ..++.+||++|++|+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus       103 Gs~~~-~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~  160 (483)
T PRK06061        103 GTAGE-VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHT  160 (483)
T ss_pred             CCccc-CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCC
Confidence            99842 23346999999999999999999999999999999999999999999998763

>PRK08137 amidase; Provisional

Probab=100.00  E-value=4.1e-40  Score=271.38  Aligned_cols=133  Identities=28%  Similarity=0.342  Sum_probs=122.2

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh----cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCC-C
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTR-G   70 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~----~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~-G   70 (135)
                      |+++|++|++||+|+++++++||+++    +.+|+|+.++.+ |+++|+++|.+++.     ||+||||+|||+|+++ |
T Consensus        11 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~~G   89 (497)
T PRK08137         11 LQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNIDAADP   89 (497)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeecceeecCC
Confidence            46789999999999999999999975    579999999886 99999999976543     9999999999999999 9


Q ss_pred             cccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccccccc-----ccCCCCCCcCCCCCCcccC
Q psy10129         71 IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGL-----VVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        71 ~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~-----~~~n~~~G~~~NP~~~~~~  134 (135)
                      ++||+||..+.++++.+||++|++|+++|||++||||||||+++.     ++.|++||+|+||||+.+.
T Consensus        90 ~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~  158 (497)
T PRK08137         90 MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS  158 (497)
T ss_pred             CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999644     4589999999999998764

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=6.7e-40  Score=274.98  Aligned_cols=132  Identities=32%  Similarity=0.436  Sum_probs=123.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecCh-HHHHHHHHhhhhhhCC--CCCcceEeeeccccCCCccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTK-NEALCKATEIVKDEKT--MLQGVTVAIKDNFCTRGIPTTCAS   77 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~-~~a~~~A~~~d~~~~~--pL~GvP~~vKD~~~v~G~~tt~Gs   77 (135)
                      |++++++|++|++|+++++++||++.+.+|+|+.... ++++++|+++|.+...  ||+||||+|||||+++|++||+||
T Consensus        12 l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs   91 (600)
T PRK08186         12 LRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAAC   91 (600)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCC
Confidence            4688999999999999999999998778999999987 6799999999976533  999999999999999999999999


Q ss_pred             ccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         78 KMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        78 ~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.+. +.|.+||++|+||+++|||++||||||||+++.++.|+.||+|+||||+.+
T Consensus        92 ~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~  146 (600)
T PRK08186         92 PAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEY  146 (600)
T ss_pred             HhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence            9986 788999999999999999999999999999999999999999999999865

>PRK06828 amidase; Provisional

Probab=100.00  E-value=2.3e-39  Score=266.65  Aligned_cols=131  Identities=28%  Similarity=0.363  Sum_probs=121.7

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCC-
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRG-   70 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G-   70 (135)
                      |++++++|++||+|+++++++||+++ +   .+|+|+.++++ ++++|+++|.+++.     ||+||||+|||+|+++| 
T Consensus        18 l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg   96 (491)
T PRK06828         18 IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDS   96 (491)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCC
Confidence            46789999999999999999999988 4   79999999988 89999999976542     99999999999999996 


Q ss_pred             cccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCcc
Q psy10129         71 IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCL  132 (135)
Q Consensus        71 ~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~  132 (135)
                      ++||+||+.+.++++.+||++|++|+++|||++||||||||+++     .++.|++||+|+||||+.
T Consensus        97 ~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~  163 (491)
T PRK06828         97 MHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTG  163 (491)
T ss_pred             CcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCc
Confidence            99999999999999999999999999999999999999999975     588999999999999984

>PRK11910 amidase; Provisional

Probab=100.00  E-value=3.9e-39  Score=269.19  Aligned_cols=132  Identities=31%  Similarity=0.441  Sum_probs=122.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC---CCCcceEeeeccccCCCccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT---MLQGVTVAIKDNFCTRGIPT   73 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~---pL~GvP~~vKD~~~v~G~~t   73 (135)
                      |++++++|++|++|++++|++||+++ +   .+|||++++++ |+++|+++|.++..   ||+||||+|||||+++|++|
T Consensus       170 L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~G~pT  248 (615)
T PRK11910        170 LQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTKELPT  248 (615)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccCCCcc
Confidence            46799999999999999999999998 6   79999999996 89999999976433   99999999999999999999


Q ss_pred             ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCccc
Q psy10129         74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~~  133 (135)
                      |+||..+.++++.+||++|++||++|||++|||||+||+++     ..+.|++||+|+||||..+
T Consensus       249 TaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r  313 (615)
T PRK11910        249 SAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNL  313 (615)
T ss_pred             CcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCC
Confidence            99999999999999999999999999999999999999977     3467889999999999864

>PRK06707 amidase; Provisional

Probab=100.00  E-value=6.1e-39  Score=266.15  Aligned_cols=132  Identities=30%  Similarity=0.405  Sum_probs=121.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccC-CCc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCT-RGI   71 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v-~G~   71 (135)
                      |++++++|++|++|+++.|++||+++ +   .+|+|++++++ |+++|+++|.++++    ||+||||+|||||++ +|+
T Consensus        76 l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~  154 (536)
T PRK06707         76 LQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVM  154 (536)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCC
Confidence            46789999999999999999999988 4   59999999887 99999999976432    999999999999999 999


Q ss_pred             ccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCccc
Q psy10129         72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        72 ~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~~  133 (135)
                      |||+||..+.++++.+||++|++|+++|||++|||||+||++.     .++.|++||+|+||||+.+
T Consensus       155 ~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~  221 (536)
T PRK06707        155 PTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIK  221 (536)
T ss_pred             ccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCccc
Confidence            9999999999999999999999999999999999999999963     5778899999999999843

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=1.9e-39  Score=259.30  Aligned_cols=120  Identities=39%  Similarity=0.520  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccccccccccCCCCCC
Q psy10129         14 EVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPY   87 (135)
Q Consensus        14 ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~   87 (135)
                      ||+++|++||+++ +.+||+++.+.++|+++|+++|+++++     ||+||||+|||+|+++|++||+||..+.+.++.+
T Consensus         1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~~~~~   80 (441)
T PF01425_consen    1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALADNPPTE   80 (441)
T ss_dssp             HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTTBBBSS
T ss_pred             CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccCcCccc
Confidence            7999999999999 999999999999999999999988742     9999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ||++|++|+++|||++||||||||+++.++.|+.||+|+||||+.+
T Consensus        81 ~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~  126 (441)
T PF01425_consen   81 DAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSR  126 (441)
T ss_dssp             S-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTB
T ss_pred             ccchhhheecccccceeeecccceeccccccccccccccCcccccc
Confidence            9999999999999999999999999999999999999999999875

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK06565 amidase; Validated

Probab=100.00  E-value=1.2e-38  Score=264.33  Aligned_cols=131  Identities=26%  Similarity=0.357  Sum_probs=121.5

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-c-----CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCC
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-S-----KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTR   69 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~-----~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~   69 (135)
                      |++++++|++|++|++++|++||+++ +     .+|+++.++++ |+++|+++|.+++.     ||+||||+|||+|+++
T Consensus        12 L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~   90 (566)
T PRK06565         12 LRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVK   90 (566)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccC
Confidence            46889999999999999999999987 3     68999998877 99999999976533     8999999999999999


Q ss_pred             CcccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         70 GIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        70 G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      |++||+||..+.++++.+||++|++|+++|||++||||||||+++.++ |.+||+++||||..+
T Consensus        91 G~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~  153 (566)
T PRK06565         91 GLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAY  153 (566)
T ss_pred             CCCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCccc
Confidence            999999999999999999999999999999999999999999999876 679999999999865

>PRK05962 amidase; Validated

Probab=100.00  E-value=3.1e-38  Score=255.95  Aligned_cols=118  Identities=28%  Similarity=0.317  Sum_probs=111.4

Q ss_pred             HHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccccccccccCCCC-CCcH
Q psy10129         17 EKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIA-PYDA   89 (135)
Q Consensus        17 ~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~-~~da   89 (135)
                      +++++||+++ +.+|+|+++++|.|+++|+++|.+++.     ||+||||+|||+|+++|+|||+||+.+.++++ .+||
T Consensus         2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA   81 (424)
T PRK05962          2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADA   81 (424)
T ss_pred             HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhcCCCCcCCh
Confidence            6899999999 999999999999999999999987532     99999999999999999999999999999988 6899


Q ss_pred             HHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         90 TVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        90 ~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      ++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+.
T Consensus        82 ~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~  126 (424)
T PRK05962         82 LIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARI  126 (424)
T ss_pred             HHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999998763

>PRK07235 amidase; Provisional

Probab=100.00  E-value=1.5e-36  Score=250.51  Aligned_cols=131  Identities=24%  Similarity=0.240  Sum_probs=122.5

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccc
Q psy10129          2 RHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCA   76 (135)
Q Consensus         2 ~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~G   76 (135)
                      +++++ +++++.|++++++++++.. +..+++.....|++...|+..+.+.+.    ||+||||+|||||+++|+|||+|
T Consensus        31 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~G  109 (502)
T PRK07235         31 LSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNG  109 (502)
T ss_pred             HHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCcc
Confidence            45677 9999999999999999999 999999999999998888887766433    89999999999999999999999


Q ss_pred             cccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         77 SKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        77 s~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      |+.+.+++|.+||++|+||+++|||++||||||||+|+.+++|++||+|+||||..+
T Consensus       110 s~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~  166 (502)
T PRK07235        110 SSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGY  166 (502)
T ss_pred             ChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999865

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=3.3e-33  Score=233.04  Aligned_cols=103  Identities=36%  Similarity=0.467  Sum_probs=95.5

Q ss_pred             CeEEecC-hHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEe
Q psy10129         30 NAFITVT-KNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG  104 (135)
Q Consensus        30 na~~~~~-~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~g  104 (135)
                      |+|++.. .|+++++|+++|++.+.    ||+||||+||||||++|++||+||+.+. ++|.+||++|+||+++|||++|
T Consensus         2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIiiG   80 (561)
T TIGR02713         2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVVG   80 (561)
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc-CCCCcCHHHHHHHHHCCCEEEE
Confidence            6888885 48899999999976532    9999999999999999999999999986 7889999999999999999999


Q ss_pred             ecCccccccccccCCCCCCcCCCCCCccc
Q psy10129        105 KTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus       105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      |||||||+++.++.|++||+|+||||+.+
T Consensus        81 KTN~~Efa~g~~g~n~~~G~t~NP~d~~~  109 (561)
T TIGR02713        81 KTNLDQFATGLVGTRSPYGAVRNAFDPAY  109 (561)
T ss_pred             EeCchHhhcCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999999999875

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PRK07139 amidase; Provisional

Probab=99.97  E-value=5.7e-32  Score=220.30  Aligned_cols=110  Identities=34%  Similarity=0.373  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccCCCCCCcHHHHHH
Q psy10129         15 VTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEK   94 (135)
Q Consensus        15 v~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~r   94 (135)
                      +.+.++++++. ..+|++++...+..         ....||+||||+|||+|+++|++||+||..+.++++.+||++|+|
T Consensus         7 ~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~~~~~dA~vV~r   76 (439)
T PRK07139          7 NFQKALEELKN-DKNNAVSYVFDEKN---------NKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVVQK   76 (439)
T ss_pred             hHHHHHHHhhc-cccCeEEEEecccC---------CCCCCcCCcEEEEEcceecCCCccCcChHHHccCCCCCchHHHHH
Confidence            45555555544 57788888755432         123499999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         95 LKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        95 L~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      |+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus        77 Lr~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~  116 (439)
T PRK07139         77 LINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKL  116 (439)
T ss_pred             HHHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCC
Confidence            9999999999999999999999999999999999998763

>KOG1211|consensus

Probab=99.97  E-value=1.2e-31  Score=218.74  Aligned_cols=130  Identities=45%  Similarity=0.579  Sum_probs=117.8

Q ss_pred             HHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc-ccccc
Q psy10129          5 INKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT-TCASK   78 (135)
Q Consensus         5 l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t-t~Gs~   78 (135)
                      +.+|.+++.++++.+++++...+.+|.++....+.++.+|...+.+.+.     ||+|+||+|||||+++|.+| ||+|.
T Consensus        27 l~~~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~  106 (506)
T KOG1211|consen   27 LSSGLLTSKRIIESYLERINKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASW  106 (506)
T ss_pred             hcccccchHHHHHHHHHHHhhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhh
Confidence            4689999999999999999999555555555556699999999876554     99999999999999999999 99999


Q ss_pred             cccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         79 MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        79 ~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      .+.++.++.||++|++|+++|||++|||||+||+||..++|.+||+|+|||++.++
T Consensus       107 ~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v  162 (506)
T KOG1211|consen  107 MLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRV  162 (506)
T ss_pred             hhccCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999998654

>PRK08310 amidase; Provisional

Probab=99.97  E-value=1.1e-30  Score=210.15  Aligned_cols=101  Identities=30%  Similarity=0.317  Sum_probs=85.7

Q ss_pred             cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccccc--CCCCCCcHHHHHHHHhCCCeEEe
Q psy10129         27 SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLE--NFIAPYDATVVEKLKQSGAIIVG  104 (135)
Q Consensus        27 ~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~--~~~~~~da~vV~rL~~aGai~~g  104 (135)
                      ..+|+|+.....       -.+.....||+||||+|||+|+++|++||+||+.+.  +.++.+||++|+||+++|||++|
T Consensus         5 ~~~~a~~~~~~~-------~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~G   77 (395)
T PRK08310          5 DPFNAFIAKPDK-------PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVG   77 (395)
T ss_pred             CccccccccCCC-------CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEE
Confidence            457888876321       001112239999999999999999999999999884  46778999999999999999999


Q ss_pred             ecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129        105 KTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus       105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      |||||||+|+.+|+|++||+|+||||+.+.
T Consensus        78 KTn~~E~~~~~~~~n~~~G~t~NP~~~~~~  107 (395)
T PRK08310         78 KTQTDELAFSLNGQNAHYGTPVNPAAPDRV  107 (395)
T ss_pred             eccchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999998753

>KOG1212|consensus

Probab=99.96  E-value=3.1e-30  Score=212.25  Aligned_cols=133  Identities=23%  Similarity=0.174  Sum_probs=125.6

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhC-----CCCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK-----TMLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~-----~pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|++++|++|+..+ +.+||++++..|.++.+|+..|...+     .||+||||+|||++.++|+.+|
T Consensus        60 L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~~vkg~d~T  139 (560)
T KOG1212|consen   60 LAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESISVKGYDST  139 (560)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhheeecCcccc
Confidence            57899999999999999999999999 99999999999999988887776553     2999999999999999999999


Q ss_pred             cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      .|.....+.+++.|+.+|+.||++|||++.+||.||.+|+..+.|+.||+|.||||..+
T Consensus       140 ~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~r  198 (560)
T KOG1212|consen  140 AGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSR  198 (560)
T ss_pred             chhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccC
Confidence            99999999999999999999999999999999999999999999999999999999754

>PLN02722 indole-3-acetamide amidohydrolase

Probab=99.96  E-value=1.6e-30  Score=210.93  Aligned_cols=101  Identities=25%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccC-C-CCCCcHHHHHHHHhCCCeEEe
Q psy10129         27 SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLEN-F-IAPYDATVVEKLKQSGAIIVG  104 (135)
Q Consensus        27 ~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~-~-~~~~da~vV~rL~~aGai~~g  104 (135)
                      ..+|+|+.....      .+.......||+||||+|||+|+++|++||+||+.+.+ + ++.+||++|+||+++|||++|
T Consensus         5 ~~~~a~~~~~~~------~~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG   78 (422)
T PLN02722          5 PDYGAFMEKFVL------SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG   78 (422)
T ss_pred             CCCCcceeeccc------cCCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence            457888877422      11111122399999999999999999999999998864 4 457899999999999999999


Q ss_pred             ecCccccccccccCCCCCCcCCCCCCccc
Q psy10129        105 KTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus       105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      |||||||+++.+|+|++||+++||||+.|
T Consensus        79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r  107 (422)
T PLN02722         79 KTIMDEMAYSINGENAHYGTPTNPIAPDR  107 (422)
T ss_pred             EechhhHhhCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		8e-26
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		7e-22
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		1e-18
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		2e-17
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		4e-16
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		7e-10
2dc0_A	434	Crystal Structure Of Amidase Length = 434		7e-07
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		2e-06
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		2e-06
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		4e-06
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		8e-06
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		8e-06
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		8e-06
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		8e-06
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		8e-06
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		8e-06
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		8e-06
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		4e-05

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score =  112 bits (279), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 1   IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           +R  + +  +S +EV E    R  +   K+ A+IT    +AL K  E +K+ +  L G+ 
Sbjct: 10  LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKAL-KQAESLKERELPLFGIP 68
Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           +A+KDN    G  TTCASK+LENF+APYDATV+E+LK++GA+IVGKTN+DEFAMG
Sbjct: 69  IAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMG 123

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           IR  + +  +S  EV +  L R++E+   L AF+++  NE L +  E V D    L G+ 
Sbjct: 6   IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSL--NERLLEEAEAV-DPGLPLAGLV 62
Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           VA+KDN  TRG+ TT  S++LENF+ PY+AT V +LK  GA+++GKTN+DEF MG
Sbjct: 63  VAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMG 117

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 5   INKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEI----VKDE-KTMLQGV 58
           I    I   +V +     IEE    + +F+ + K  A+ KA E+     KD+    L G+
Sbjct: 15  IKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGI 74
Query: 59  TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            + IKDN  T G+ TTCASKMLE F+  Y++TV+EKL +  A+++GK NMDEFAMG
Sbjct: 75  PMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMG 130

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 8/86 (9%)
Query: 29  LNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYD 88
           + AFI+V +N ++ K        K    G+ VAIKDN  T G+ TTCAS++LEN+ + +D
Sbjct: 40  VKAFISVRENVSVEK--------KGKFWGIPVAIKDNILTLGMRTTCASRILENYESVFD 91
Query: 89  ATVVEKLKQSGAIIVGKTNMDEFAMG 114
           ATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 92  ATVVKKMKEAGFVVVGKANLDEFAMG 117

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 12/96 (12%)
Query: 23  IEEVSKLN----AFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASK 78
           +E + +L+    AFI+V +N ++        ++K    G+ VAIKDN  T G  TTCAS+
Sbjct: 31  LETIKRLDPHVKAFISVRENVSV--------EKKGKFWGIPVAIKDNILTLGXRTTCASR 82
Query: 79  MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           +LEN+ + +DATVV+K K++G ++VGK N+DEFA G
Sbjct: 83  ILENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11  SIREVTEKCLSRIEEVSKLNAFITV-TKNEALCKATEIVKDEKT--MLQGVTVAIKDNFC 67
           +I +V  +   RI        +I +  + E L +A  +     T   L GV  A+KDN  
Sbjct: 48  TIEQVVTEAYDRITRYGDKAVWIALRPREEVLAEARALDASPATGKPLYGVPFAVKDNID 107
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLV 116
             G+P + A      +    DATVV +L+ +GAI++GKTN+D+FA GLV
Sbjct: 108 VAGLPCSAACPAF-TYEPDRDATVVARLRAAGAIVLGKTNLDQFATGLV 155

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 17  EKCLSRIEEVSKLNAFITV----TKNEALCKATEIVKDE-KTMLQGVTVAIKDNFCTRGI 71
           E+ L R +     NA   +     + EAL    E+ + + +  L G+ + +KD F  +G+
Sbjct: 22  EEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGM 81
Query: 72  PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLG 123
           PT   +K     + P +A  V +L+++GA++  KTN  E A+G+     W G
Sbjct: 82  PTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNXHEIALGITGENPWTG 132

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 45  TEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG 104
           T I      +L G  VAIKDN    G+P    S+ +E F    DATVV +L  +GA + G
Sbjct: 78  TSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAG 137
Query: 105 K 105
           K
Sbjct: 138 K 138

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 45  TEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG 104
           T I      +L G  VAIKDN    G+P    S+ +E F    DATVV +L  +GA + G
Sbjct: 78  TSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAG 137
Query: 105 K 105
           K
Sbjct: 138 K 138

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 55  LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           L G+ + +KDN     + T+  S  L+ F  P DA +V +L+ +GA+++GKTN+ E+A
Sbjct: 78  LHGIPLLLKDNINAAPMATSAGSLALQGF-RPDDAYLVRRLRDAGAVVLGKTNLSEWA 134

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V IKD   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 20  LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
           L R  E  +L+    + ++ A  +A E      V+ +K+        L+G+ V I D   
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIADIID 66
Query: 68  TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
           T  +PT   S++   +    DA VV  LK++GA I+GKT    FA
Sbjct: 67  TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-57
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	6e-57
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-56
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	1e-55
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	6e-55
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	2e-52
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	7e-50
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	8e-47
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	1e-37
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	5e-30

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  183 bits (468), Expect = 2e-57
 Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 4/116 (3%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM-LQGV 58
           +R  + +  +S +EV E    R  +   K+ A+IT    +AL +A  +   E+ + L G+
Sbjct: 10  LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESL--KERELPLFGI 67

Query: 59  TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
            +A+KDN    G  TTCASK+LENF+APYDATV+E+LK++GA+IVGKTN+DEFAMG
Sbjct: 68  PIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMG 123

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  182 bits (465), Expect = 6e-57
 Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           IR  + +  +S  EV +  L R++E+   L AF+++ +   L +A  +  D    L G+ 
Sbjct: 6   IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNE-RLLEEAEAV--DPGLPLAGLV 62

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           VA+KDN  TRG+ TT  S++LENF+ PY+AT V +LK  GA+++GKTN+DEF MG
Sbjct: 63  VAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMG 117

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  181 bits (463), Expect = 2e-56
 Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 10/122 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK------- 52
           +   I    I   +V +     IEE    + +F+ + K  A+ KA E+  DE        
Sbjct: 11  LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQEL--DELQAKDQMD 68

Query: 53  TMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
             L G+ + IKDN  T G+ TTCASKMLE F+  Y++TV+EKL +  A+++GK NMDEFA
Sbjct: 69  GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFA 128

Query: 113 MG 114
           MG
Sbjct: 129 MG 130

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  179 bits (456), Expect = 1e-55
 Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           I   +  +     ++ +  L  I+ +   + AFI+V +N ++ K  +          G+ 
Sbjct: 12  IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGK--------FWGIP 63

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           VAIKDN  T G+ TTCAS++LEN+ + +DATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 64  VAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 118

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  176 bits (449), Expect = 6e-55
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM------ 54
            +  +     +   + E+ L R +     NA   + +  A  +A  +   E+        
Sbjct: 6   AKRLLETGRTTPLALLEEALERAKAFQDRNALAYLDEEAARKEALAL--TEELRRGQVRG 63

Query: 55  -LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
            L G+ + +KD F  +G+PT   +K     + P +A  V +L+++GA++  KTNM E A+
Sbjct: 64  PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNMHEIAL 122

Query: 114 G 114
           G
Sbjct: 123 G 123

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  169 bits (431), Expect = 2e-52
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           ++  I    +S      +  + IE    +++AF+   K+                L+G+ 
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARA--------QASGPLRGIA 58

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           V IKD   T  +PT   S++   +    DA VV  LK++GA I+GKT    FA  
Sbjct: 59  VGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR 113

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  164 bits (418), Expect = 7e-50
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEI-----VKDE 51
           ++  +    +    +T+  L RI  +     +L A I +   +AL +A E          
Sbjct: 16  LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERRDGRL 74

Query: 52  KTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
           +  L G+ + +KDN     + T+  S  L+ F  P DA +V +L+ +GA+++GKTN+ E+
Sbjct: 75  RGPLHGIPLLLKDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEW 133

Query: 112 AMG 114
           A  
Sbjct: 134 ANF 136

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  157 bits (398), Expect = 8e-47
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 10  ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKA-----------TEIVKDEKTMLQG 57
            ++ +        ++++ +      T ++  A+  A           T I      +L G
Sbjct: 31  PALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTG 90

Query: 58  VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
             VAIKDN    G+P    S+ +E F    DATVV +L  +GA + GK   ++    
Sbjct: 91  RRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFS 147

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  132 bits (334), Expect = 1e-37
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 10  ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNF-C 67
           IS  E+ E  ++ ++ V  ++NA I     +A  ++    +       GV   +KD    
Sbjct: 22  ISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES----ELASGPFAGVPYLLKDLTVV 77

Query: 68  TRGIPTTCASKMLEN--FIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           ++G   T + K ++   + A +DA  V++++ +G +++GKTN  E    
Sbjct: 78  SQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  112 bits (281), Expect = 5e-30
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           +   +    +S   V    L +  EV    N   +   +     +       + +L GV 
Sbjct: 76  LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQA---PRQGLLYGVP 132

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGL 115
           V++K+ F  +G  +T    + E   +  D  VV+ LK  GA+    TN+ +     
Sbjct: 133 VSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSY 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=3.3e-44  Score=293.79  Aligned_cols=133  Identities=36%  Similarity=0.538  Sum_probs=127.6

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhh-C----CCCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDE-K----TMLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~-~----~pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++||++++++||++. +.+|||+++++|+|+++|+++|.++ +    .||+||||+|||||+++|++||
T Consensus        11 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~gpL~GvPi~vKD~~~v~G~~tt   90 (485)
T 3ip4_A           11 LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETT   90 (485)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCCCCcCCCEEEEEcCcccCCCccC
Confidence            46899999999999999999999999 9999999999999999999999876 3    3999999999999999999999


Q ss_pred             cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +||+.+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        91 ~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~  149 (485)
T 3ip4_A           91 CASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKA  149 (485)
T ss_dssp             TTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred             CCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCc
Confidence            99999999999999999999999999999999999999999999999999999999875

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.2e-43  Score=285.61  Aligned_cols=130  Identities=24%  Similarity=0.386  Sum_probs=123.6

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++|+++++++||++. + +|+|+++++|+|+++|+++|.++++     ||+||||+|||+|+++|++||
T Consensus         6 l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt   84 (434)
T 2dc0_A            6 AKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTR   84 (434)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccC
Confidence            47899999999999999999999999 9 9999999999999999999986542     999999999999999999999


Q ss_pred             cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +||+.+  +++ .+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        85 ~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  142 (434)
T 2dc0_A           85 AGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSR  142 (434)
T ss_dssp             TTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTB
T ss_pred             CCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence            999999  667 899999999999999999999999999999999999999999999865

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=1.6e-43  Score=289.41  Aligned_cols=132  Identities=41%  Similarity=0.583  Sum_probs=127.1

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++|++||++++++||++. +.+|||+++++|+|+++|+++|.+ ..||+||||+|||+|+++|++||+||+.
T Consensus        10 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~-~gpL~GvPi~vKD~~~~~G~~tt~Gs~~   88 (478)
T 3h0l_A           10 LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-ELPLFGIPIAVKDNILVEGEKTTCASKI   88 (478)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT-TSTTTTCEEEEETTBCCTTSBCCTTCGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh-cCCcCCceEEEEcCccCCCCCcCCcCHh
Confidence            46899999999999999999999999 999999999999999999999876 4599999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        89 ~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~  142 (478)
T 3h0l_A           89 LENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLER  142 (478)
T ss_dssp             GTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTB
T ss_pred             hcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999875

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-43  Score=287.14  Aligned_cols=130  Identities=37%  Similarity=0.537  Sum_probs=125.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++|++||++++++||++. +.+|||++++ |+|+++|+++|.++  ||+||||+|||+|+++|++||+||+.
T Consensus         6 l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~--pL~GvPi~vKD~~~~~G~~tt~Gs~~   82 (471)
T 3kfu_E            6 IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL--PLAGLVVAVKDNIATRGLRTTAGSRL   82 (471)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSC--TTTTCEEEEETTBCCTTSCCCTTCST
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccC--CcCCCeEEEECCcccCCccccccCHh
Confidence            46899999999999999999999999 9999999999 99999999998765  99999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        83 ~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~  136 (471)
T 3kfu_E           83 LENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDR  136 (471)
T ss_dssp             TTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred             HcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCc
Confidence            999999999999999999999999999999999999999999999999999875

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=1.3e-42  Score=284.69  Aligned_cols=129  Identities=21%  Similarity=0.225  Sum_probs=124.3

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccc-cCCCcccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNF-CTRGIPTTCASK   78 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~-~v~G~~tt~Gs~   78 (135)
                      |+++|++|++|++||++++++||++. +.+|||+++++|+|+++|++ |   ..||+||||+||||| +++|++||+||+
T Consensus        13 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d---~gpL~GvPi~vKD~~~~v~G~~Tt~Gs~   88 (493)
T 3a2q_A           13 QAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A---SGPFAGVPYLLKDLTVVSQGDINTSSIK   88 (493)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C---CSTTTTCEEEEESSSSCCTTSBCCTTCH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c---CCCcCCcEEEEecCCcCcCCCcccccCh
Confidence            47899999999999999999999999 99999999999999999998 7   459999999999999 999999999999


Q ss_pred             ccc--CCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         79 MLE--NFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        79 ~~~--~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      .+.  ++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        89 ~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  145 (493)
T 3a2q_A           89 GMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGR  145 (493)
T ss_dssp             HHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTB
T ss_pred             hhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCC
Confidence            999  9999999999999999999999999999999999999999999999999875

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=9.2e-42  Score=280.35  Aligned_cols=131  Identities=25%  Similarity=0.378  Sum_probs=123.2

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh----cCcCeEEecChHHHHHHHHhhhhhhC-----CCCCcceEeeeccccCCCc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEK-----TMLQGVTVAIKDNFCTRGI   71 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~----~~lna~~~~~~~~a~~~A~~~d~~~~-----~pL~GvP~~vKD~~~v~G~   71 (135)
                      |+++|++|++|++||++++++||++.    +.+|||+++++| |+++|+++|.+++     .||+||||+|||||+++|+
T Consensus        16 l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~   94 (503)
T 1m22_A           16 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPM   94 (503)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCCTTS
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccccCCC
Confidence            47899999999999999999999986    479999999998 9999999997653     2999999999999999999


Q ss_pred             ccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccccc-----ccccCCCCCCcCCCCCCccc
Q psy10129         72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM-----GLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        72 ~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~-----~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +||+||+.+.++++ +||++|+||+++|||++||||||||++     +.+|+|++||+|+||||+.+
T Consensus        95 ~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~  160 (503)
T 1m22_A           95 ATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISH  160 (503)
T ss_dssp             CCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTB
T ss_pred             CcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999 999999999999999999999999998     78899999999999999875

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=2.6e-40  Score=275.10  Aligned_cols=130  Identities=19%  Similarity=0.201  Sum_probs=121.2

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++|++||+++|++||++. +.+||++++.+| ++++|++.+..  .||+||||+|||||+++|++||+||..
T Consensus        76 l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~~--gpL~GvPi~vKD~~~~~G~~tt~Gs~~  152 (573)
T 3ppm_A           76 LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPRQ--GLLYGVPVSLKECFSYKGHDSTLGLSL  152 (573)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCTT--CTTTTCEEEEETTBCCBTCCCCTTCGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhhc--CCcCCCeEEEEcccCCCCCCcCCcChh
Confidence            46789999999999999999999999 999999999876 56677666542  599999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|++|+++|||++||||||||+|+.+|.|+.||+|+||||+.+
T Consensus       153 ~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~  206 (573)
T 3ppm_A          153 NEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSK  206 (573)
T ss_dssp             GTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTB
T ss_pred             hcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999865

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=2.3e-40  Score=270.45  Aligned_cols=123  Identities=36%  Similarity=0.501  Sum_probs=115.9

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccccc
Q psy10129          3 HAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLE   81 (135)
Q Consensus         3 ~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~   81 (135)
                      ++|++|++|++|+++++++||++. +.+|+|+++++|+|+      |+  ..||+||||+|||||+++|++||+||+.+.
T Consensus        14 ~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~--~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~   85 (476)
T 2gi3_A           14 ECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK--KGKFWGIPVAIKDNILTLGMRTTCASRILE   85 (476)
T ss_dssp             HHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC--CSTTTTCEEEEETTBCCSSSCCCTTCGGGT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc--cCCcCCceEEEEcCccCCCCccCccChhhc
Confidence            348999999999999999999999 999999999988777      22  159999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         82 NFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        82 ~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        86 ~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  137 (476)
T 2gi3_A           86 NYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLER  137 (476)
T ss_dssp             TCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred             CCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999865

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=3.4e-38  Score=253.94  Aligned_cols=119  Identities=27%  Similarity=0.342  Sum_probs=110.0

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++|++|+++++++||++. +.+|||+++++|+| +       ....||+||||+|||+|+++|++||+||+.
T Consensus         7 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-------~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~   78 (414)
T 1o9p_A            7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-------QASGPLRGIAVGIKDIIDTANMPTEMGSEI   78 (414)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-------CSSSTTTTCEEEEETTBCCSSSCCCTTSGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-------ccCCCcCCCEEEEEcccccCCcccCcCCHh
Confidence            47899999999999999999999999 99999999998876 2       223499999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+||++|+||+++|||++||||||||++    .|+  |+|+||||+.+
T Consensus        79 ~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~  126 (414)
T 1o9p_A           79 YRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGH  126 (414)
T ss_dssp             GTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTB
T ss_pred             hccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCC
Confidence            9999999999999999999999999999999998    455  99999999875

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=6.4e-37  Score=252.56  Aligned_cols=131  Identities=21%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             HHHHHcCCCCH-HHHHHHHHHHHHhh-cCcCeEE-ecChHHHHHHHHhhhh----------hh----CCCCCcceEeeec
Q psy10129          2 RHAINKNNISI-REVTEKCLSRIEEV-SKLNAFI-TVTKNEALCKATEIVK----------DE----KTMLQGVTVAIKD   64 (135)
Q Consensus         2 ~~~l~~g~~s~-~ev~~~~l~ri~~~-~~lna~~-~~~~~~a~~~A~~~d~----------~~----~~pL~GvP~~vKD   64 (135)
                      ...|.+++++. +|+++.++++++++ +.+|+++ .+..+++ .++...|+          +.    ..||+||||+|||
T Consensus        19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD   97 (521)
T 3a1k_A           19 GITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKD   97 (521)
T ss_dssp             TCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEET
T ss_pred             hcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEc
Confidence            34567889999 99999999999988 6665665 5555444 44444443          11    1299999999999


Q ss_pred             cccCCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         65 NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        65 ~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      ||+++|++||+||+.+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus        98 ~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~  166 (521)
T 3a1k_A           98 NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQR  166 (521)
T ss_dssp             TBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEE
T ss_pred             CcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	4e-30
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	6e-30
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	4e-23
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	1e-22
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	3e-22

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 4e-30
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           +   +    +S   V    L +  EV    N   +   +     +       + +L GV 
Sbjct: 46  LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQ---APRQGLLYGVP 102

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           V++K+ F  +G  +T    + E   +  D  VV+ LK  GA+    TN+ +  +
Sbjct: 103 VSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSML 156

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           I   +  +     ++ +  L  I+ +   + AFI+V +N ++        ++K    G+ 
Sbjct: 11  IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV--------EKKGKFWGIP 62

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           VAIKDN  T G+ TTCAS++LEN+ + +DATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 63  VAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 91.0 bits (225), Expect = 4e-23
 Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 10/121 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM----- 54
           +   I    I   +V +     IEE    + +F+ + K  A+ KA E+  DE        
Sbjct: 11  LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQEL--DELQAKDQMD 68

Query: 55  --LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
             L G+ + IKDN  T G+ TTCASKMLE F+  Y++TV+EKL +  A+++GK NMDEFA
Sbjct: 69  GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFA 128

Query: 113 M 113
           M
Sbjct: 129 M 129

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 89.8 bits (221), Expect = 1e-22
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           ++  I    +S      +  + IE    +++AF+   K+                L+G+ 
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR--------AQASGPLRGIA 58

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           V IKD   T  +PT   S++   +    DA VV  LK++GA I+GKT    FA  
Sbjct: 59  VGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR 113

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score = 89.0 bits (219), Expect = 3e-22
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 11/122 (9%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEKT--- 53
           ++  +    +    +T+  L RI  +     +L A I +   +AL +A E  ++ +    
Sbjct: 12  LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERRDGRL 70

Query: 54  --MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
              L G+ + +KDN     + T+  S  L     P DA +V +L+ +GA+++GKTN+ E+
Sbjct: 71  RGPLHGIPLLLKDNINAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAGAVVLGKTNLSEW 129

Query: 112 AM 113
           A 
Sbjct: 130 AN 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-42  Score=283.05  Aligned_cols=131  Identities=19%  Similarity=0.171  Sum_probs=122.2

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++|++||+++|++||+++ +.+|||+++.+|.+++.|+..+   ..||+||||+|||+|+++|++||+||..
T Consensus        46 l~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a~~~~---~gpL~GvPi~vKD~~~~~g~~tt~Gs~~  122 (537)
T d1mt5a_          46 LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR---QGLLYGVPVSLKECFSYKGHDSTLGLSL  122 (537)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHHTCCT---TSTTTTCEEEEETTSCCBTSBCCSSCGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHHcCCC---CCCcCCCeEEeEcccCcCCCccCccChh
Confidence            57899999999999999999999999 9999999999987776665432   2499999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +.++++.+||++|++|+++|||++||||||||+++.+|+|++||+|+||||+.+.
T Consensus       123 ~~~~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~  177 (537)
T d1mt5a_         123 NEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKS  177 (537)
T ss_dssp             GSSCBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSC
T ss_pred             hcCCCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccc
Confidence            9999999999999999999999999999999999999999999999999998764

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=5.8e-42  Score=274.81  Aligned_cols=132  Identities=25%  Similarity=0.347  Sum_probs=121.4

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh----cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGI   71 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~----~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~   71 (135)
                      |+++|++|++|++||+++|++||++.    +.+|||+++++| |+++|+++|+++++     ||+||||+|||+|+|+|+
T Consensus        12 l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~vKD~~~v~g~   90 (490)
T d1m22a_          12 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPM   90 (490)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCCTTS
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEEEcccccCCC
Confidence            57899999999999999999999754    689999999877 99999999987554     899999999999999999


Q ss_pred             ccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccC-----CCCCCcCCCCCCcccC
Q psy10129         72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVR-----ILWLGLQSEFKLCLSY  134 (135)
Q Consensus        72 ~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~-----n~~~G~~~NP~~~~~~  134 (135)
                      +||+||..+.+..+ +||++|++|+++|||++||||||||+|+.+|+     |++||+|+||||+.+.
T Consensus        91 ~tt~Gs~~~~~~~~-~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~  157 (490)
T d1m22a_          91 ATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHS  157 (490)
T ss_dssp             CCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBC
T ss_pred             ccCCcchhhcccCC-ccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccC
Confidence            99999999998764 79999999999999999999999999998775     9999999999999764

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=7.4e-42  Score=275.46  Aligned_cols=133  Identities=35%  Similarity=0.532  Sum_probs=127.8

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT   74 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt   74 (135)
                      |+++|++|++|++||+++|++||+++ +.+|||+++++|+|+++|+++|+++++     ||+||||+|||+|+++|++||
T Consensus        11 l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~~tt   90 (485)
T d2f2aa1          11 LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETT   90 (485)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCCccC
Confidence            46899999999999999999999999 999999999999999999999987543     999999999999999999999


Q ss_pred             cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +||..+.++.+.+|+++|++|+++|||++||||||||+++..+.|.+||+++||||+.+
T Consensus        91 ~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~  149 (485)
T d2f2aa1          91 CASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKA  149 (485)
T ss_dssp             TTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred             CcChhhccCCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999864

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3e-41  Score=271.04  Aligned_cols=126  Identities=36%  Similarity=0.494  Sum_probs=118.2

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++++.|++|++|+++.+|+||+++ |.+|||++++++.|+++        +.||+||||+|||+|+++|++||+||+.
T Consensus        11 ~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~~--------~gpL~GvPi~vKD~~~~~g~~tt~Gs~~   82 (475)
T d2gi3a1          11 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK--------KGKFWGIPVAIKDNILTLGMRTTCASRI   82 (475)
T ss_dssp             HHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC--------CSTTTTCEEEEETTBCCSSSCCCTTCGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhhhc--------cCCCCCCEEEEEcccCCCCCccCccChh
Confidence            46789999999999999999999999 99999999998865431        2499999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY  134 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~  134 (135)
                      +.++++.+||++|++|+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus        83 ~~~~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~  137 (475)
T d2gi3a1          83 LENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERV  137 (475)
T ss_dssp             GTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBC
T ss_pred             hcCCCCCCCcceeeehhhcCCccccccchhhcccccccccchhcccccccccccc
Confidence            9999999999999999999999999999999999999999999999999998764

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=1.3e-35  Score=234.41  Aligned_cols=119  Identities=27%  Similarity=0.327  Sum_probs=106.9

Q ss_pred             CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129          1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM   79 (135)
Q Consensus         1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~   79 (135)
                      |+++|++|++||+||+++|++||+++ +.+|||++.+.+     |+   .....||+||||+|||+|+|+|++||+||..
T Consensus         7 l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~-----~~---~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~   78 (412)
T d1ocka_           7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-----AR---AQASGPLRGIAVGIKDIIDTANMPTEMGSEI   78 (412)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-----CC---CCSSSTTTTCEEEEETTBCCSSSCCCTTSGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH-----hc---CccCCCcCCCEEEEEcccCCCCCcccccChh
Confidence            57899999999999999999999999 999999987643     11   1123399999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129         80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS  133 (135)
Q Consensus        80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~  133 (135)
                      +.++++.+|+++|++|+++|||++||||||||+++      .+|.+.||||..+
T Consensus        79 ~~~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~  126 (412)
T d1ocka_          79 YRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGH  126 (412)
T ss_dssp             GTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTB
T ss_pred             hhCCCCcceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccc
Confidence            99999999999999999999999999999999975      4688999999865