Psyllid ID: psy10233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccEEEccccccEEccccccccccEEEcccccccccccccccccccEEEccccccEEEEcccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccHHHHHHHcccccccEEEccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccHccEEEEcccccEEcHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEcccccccccHHHcccccccEEEcEEccccccccHHHHHHHHcccccEEEEEcccHHHHccHcHHHHHHHHHHcccEcccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MTKASLRKICkdnklyltpslndvlylHFKGYTVIENLeeytglkclwlenngiskienldAQTEMRSIYMHHNLVKVMENLshmqlldtINLSHNFIEKIenlsclpvlrtlhLSHNRLKTIediehlkdcpllsivdvshnqiedeeVIEVFGAMPELRVLtlshnpcvgkikNYRRMFINLCVNlrhlddypvfdkdrkcaeaw
Flexible Loop (DISEMBL)
mtkaslrkickdnklyltpslndvLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEdiehlkdcplLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNlrhlddypvfdkDRKCAEAW
Low Complexity Region (SEG)
MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Disordered region (IsUnstruct)
*******KICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDK********
Disordered Region (DISOPRED)
*TKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Disordered Region (DISEMBL)
MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Disordered Region (DISPRO)
*TKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q8NEP3	725	Dynein assembly factor 1,	yes	N/A	1.0	0.285	0.584	2e-73
Q3SYS4	643	Dynein assembly factor 1,	yes	N/A	1.0	0.321	0.579	7e-71
Q9D2H9	634	Dynein assembly factor 1,	yes	N/A	1.0	0.326	0.584	3e-69
Q6AYH9	633	Dynein assembly factor 1,	yes	N/A	1.0	0.327	0.584	4e-69
B6D5P1	622	Dynein assembly factor 1,	N/A	N/A	1.0	0.332	0.579	1e-68
B6D5P6	622	Dynein assembly factor 1,	N/A	N/A	1.0	0.332	0.579	2e-68
B6D5P3	622	Dynein assembly factor 1,	N/A	N/A	1.0	0.332	0.579	3e-68
Q7PK92	910	Dynein assembly factor 1,	yes	N/A	1.0	0.227	0.559	2e-63
Q16RY9	1107	Dynein assembly factor 1,	N/A	N/A	1.0	0.186	0.550	1e-62
Q7ZV84	555	Dynein assembly factor 1,	yes	N/A	1.0	0.372	0.550	2e-61

>sp|Q8NEP3|DAAF1_HUMAN Dynein assembly factor 1, axonemal OS=Homo sapiens GN=DNAAF1 PE=1 SV=5

 Score =  275 bits (703), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 165/207 (79%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL++ +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP + +I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms. Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.
Homo sapiens (taxid: 9606)

>sp|Q3SYS4|DAAF1_BOVIN Dynein assembly factor 1, axonemal OS=Bos taurus GN=DNAAF1 PE=2 SV=2

 Score =  266 bits (680), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 161/207 (77%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLH+KG+  IENLEEYTGL+CLWLE NGI KIENL
Sbjct: 88  MTKKFLQKLCKQHKLYITPALNDTLYLHYKGFDRIENLEEYTGLRCLWLECNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +N+S+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQVNLLHKIENLEPLQKLDALNISNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ V  +MP+LRVL L  NP +  I NYRR+
Sbjct: 208 ETVEDIQHLRECARLCVLDLSHNKLSDPEILRVLESMPDLRVLNLMGNPVIKNIPNYRRI 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 LTVRLKHLTYLDDRPVFPKDRACAEAW 294

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Bos taurus (taxid: 9913)

>sp|Q9D2H9|DAAF1_MOUSE Dynein assembly factor 1, axonemal OS=Mus musculus GN=Dnaaf1 PE=2 SV=1

 Score =  261 bits (667), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 156/207 (75%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 82  MTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
            AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct: 142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+ DIEHL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct: 202 ETVADIEHLRECLRLCVLDLSHNALSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 262 VTVRLKHLTYLDDRPVFPKDRACAEAW 288

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Mus musculus (taxid: 10090)

>sp|Q6AYH9|DAAF1_RAT Dynein assembly factor 1, axonemal OS=Rattus norvegicus GN=Dnaaf1 PE=2 SV=1

 Score =  260 bits (665), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 155/207 (74%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 82  MTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
            AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct: 142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+ DIEHL++C  L ++D+SHN + D E++ V   MP LRVL L  NP    I NYRR 
Sbjct: 202 ETVADIEHLRECLQLCVLDLSHNSLSDPEILSVLETMPCLRVLNLMGNPVTKHIPNYRRT 261

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 262 VTVRLKHLTYLDDRPVFPKDRACAEAW 288

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Rattus norvegicus (taxid: 10116)

>sp|B6D5P1|DAAF1_PERPL Dynein assembly factor 1, axonemal OS=Peromyscus polionotus GN=Dnaaf1 PE=2 SV=1

 Score =  259 bits (661), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 155/207 (74%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 82  MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
            AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct: 142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+ DI+HL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct: 202 ETVADIQHLRECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                  L +LDD PVF KDR CAEAW
Sbjct: 262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Peromyscus polionotus (taxid: 42413)

>sp|B6D5P6|DAAF1_PERCA Dynein assembly factor 1, axonemal OS=Peromyscus californicus GN=Dnaaf1 PE=2 SV=1

 Score =  258 bits (659), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 154/207 (74%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 82  MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
            AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct: 142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+ DI+HL +C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct: 202 ETVADIQHLGECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                  L +LDD PVF KDR CAEAW
Sbjct: 262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Peromyscus californicus (taxid: 42520)

>sp|B6D5P3|DAAF1_PERLE Dynein assembly factor 1, axonemal OS=Peromyscus leucopus GN=Dnaaf1 PE=2 SV=1

 Score =  257 bits (657), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 155/207 (74%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 82  MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
            AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct: 142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+ DI+HL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct: 202 ETVADIQHLRECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                  L +LDD PVF KDR CAEAW
Sbjct: 262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Peromyscus leucopus (taxid: 10041)

>sp|Q7PK92|DAAF1_ANOGA Dynein assembly factor 1, axonemal homolog OS=Anopheles gambiae GN=AGAP009594 PE=3 SV=2

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/209 (55%), Positives = 151/209 (72%), Gaps = 2/209 (0%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK +++  C+ NKLYLTP LNDVLYLH+ GY  I+ L+EY GLKCLWLE N IS I  L
Sbjct: 1   MTKKTIQASCRKNKLYLTPHLNDVLYLHYSGYNAIDGLDEYVGLKCLWLECNAISNISGL 60

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLSHN 118
           D Q+++R +Y+H+NL+K +ENL H + LDT+NLSHN I KIEN     LPVL TL++SHN
Sbjct: 61  DHQSQLRCLYLHNNLIKKIENLQHCKQLDTLNLSHNHIAKIENCGSDILPVLNTLNISHN 120

Query: 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
            LK+IE +  L+ C  +S++D+SHN+IED  +++V   M  LRVLTL  NP V  I +YR
Sbjct: 121 YLKSIESLAELRKCDFVSVLDISHNRIEDIAIVKVLADMKGLRVLTLVGNPVVNDIPSYR 180

Query: 179 RMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
           +  I  C +L +LD  PVFDKDR CAEAW
Sbjct: 181 KTLILECKSLTYLDSRPVFDKDRACAEAW 209

Cilium-specific protein required for cilia structures.

Anopheles gambiae (taxid: 7165)

>sp|Q16RY9|DAAF1_AEDAE Dynein assembly factor 1, axonemal homolog OS=Aedes aegypti GN=AAEL010772 PE=3 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 156/209 (74%), Gaps = 2/209 (0%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK S+   CK NKLY+TP LND+LYL++ GY  IE+LEEY GLKCLWLE N IS+I+ L
Sbjct: 15  MTKKSIVDSCKKNKLYITPHLNDILYLNYSGYNAIESLEEYVGLKCLWLECNAISEIKGL 74

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS--CLPVLRTLHLSHN 118
           + QTE++ +Y+ +NL+  +ENL   + LDT+NLSHN I +IEN     LPVL TL+LSHN
Sbjct: 75  EYQTELKCLYLQNNLITKIENLDSCKQLDTLNLSHNHITRIENCGHDILPVLNTLNLSHN 134

Query: 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
            LKT ++++HL+ C  +S++D+SHN+IED  ++++ G M ELRVLT++ NP V +I +YR
Sbjct: 135 YLKTADNLDHLRHCNFVSVLDLSHNRIEDIAIVKILGGMKELRVLTMTGNPVVNEIPSYR 194

Query: 179 RMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
           +  I  C NL +LD  PVFD+DR CAEAW
Sbjct: 195 KTLILECKNLTYLDTRPVFDRDRACAEAW 223

Cilium-specific protein required for cilia structures.

Aedes aegypti (taxid: 7159)

>sp|Q7ZV84|DAAF1_DANRE Dynein assembly factor 1, axonemal OS=Danio rerio GN=dnaaf1 PE=2 SV=2

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/207 (55%), Positives = 148/207 (71%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           +TK  LR+ CK NKLYLTP LND LYLHFKG++ IE LEEYTGL+CLWLE NGI KIENL
Sbjct: 55  ITKDFLREHCKKNKLYLTPRLNDTLYLHFKGFSCIEGLEEYTGLRCLWLECNGIRKIENL 114

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           + QTE+R +++H NL+  +ENL  +  L T+N+S+N+I+ IEN+S L  L TL +SHN L
Sbjct: 115 ENQTELRCLFLHQNLIHTLENLEPLSKLCTLNVSNNYIKVIENISSLSDLSTLQISHNTL 174

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             + D+E L  CP +S++D+SHN+I D  ++ +   MP+LRVL L  N  + KI NYR+ 
Sbjct: 175 GNVCDMEELSHCPSISVLDLSHNRISDPALVNILEKMPDLRVLNLMGNEVIKKIPNYRKT 234

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
            I     L +LDD PVF KDR CAEAW
Sbjct: 235 LIVRLKQLTYLDDRPVFPKDRACAEAW 261

Cilium-specific protein required for the stability of the ciliary architecture. Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
71052109	725	Leucine rich repeat containing 50 [Homo	1.0	0.285	0.584	4e-72
119615906	725	leucine rich repeat containing 50, isofo	1.0	0.285	0.584	6e-72
157674358	725	dynein assembly factor 1, axonemal [Homo	1.0	0.285	0.584	8e-72
402909167	725	PREDICTED: LOW QUALITY PROTEIN: dynein a	1.0	0.285	0.584	2e-71
426383078	725	PREDICTED: dynein assembly factor 1, axo	1.0	0.285	0.579	3e-71
114663880	725	PREDICTED: dynein assembly factor 1, axo	1.0	0.285	0.584	6e-71
410984085	760	PREDICTED: dynein assembly factor 1, axo	1.0	0.272	0.579	1e-70
397500525	638	PREDICTED: dynein assembly factor 1, axo	1.0	0.324	0.584	1e-70
297699333	709	PREDICTED: dynein assembly factor 1, axo	1.0	0.291	0.579	3e-70
332246859	681	PREDICTED: LOW QUALITY PROTEIN: dynein a	1.0	0.303	0.579	2e-69

>gi|71052109|gb|AAH24009.3| Leucine rich repeat containing 50 [Homo sapiens]

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 165/207 (79%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL++ +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP + +I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119615906|gb|EAW95500.1| leucine rich repeat containing 50, isoform CRA_a [Homo sapiens]

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 165/207 (79%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL++ +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP + +I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157674358|ref|NP_848547.4| dynein assembly factor 1, axonemal [Homo sapiens] gi|215274261|sp|Q8NEP3.5|DAAF1_HUMAN RecName: Full=Dynein assembly factor 1, axonemal; AltName: Full=Leucine-rich repeat-containing protein 50

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 165/207 (79%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL++ +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP + +I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402909167|ref|XP_003917296.1| PREDICTED: LOW QUALITY PROTEIN: dynein assembly factor 1, axonemal [Papio anubis]

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 161/207 (77%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYTTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I  IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQVNLLHKIENLEALQKLDALNLSNNYIRTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP +  I NYRR 
Sbjct: 208 ETVEDIQHLRECLTLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426383078|ref|XP_004058120.1| PREDICTED: dynein assembly factor 1, axonemal [Gorilla gorilla gorilla]

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 164/207 (79%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLH+KG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHYKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L+ NP +  I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLTGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114663880|ref|XP_511137.2| PREDICTED: dynein assembly factor 1, axonemal [Pan troglodytes]

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 163/207 (78%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP +  I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILRILESMPDLRVLNLMGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410984085|ref|XP_003998362.1| PREDICTED: dynein assembly factor 1, axonemal [Felis catus]

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 160/207 (77%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK  ++K+CK ++LY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct: 88  MTKRFIQKLCKQHQLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+NFI+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQVNLLHKIENLEPLQKLDALNLSNNFIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HLK+C  L ++D+SHN++ D E++ V  +MP+LRVL L  NP +  + NYRR 
Sbjct: 208 ETVEDIQHLKECLKLCVLDLSHNKLSDPEILSVLESMPDLRVLNLMGNPVIKHVANYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397500525|ref|XP_003820961.1| PREDICTED: dynein assembly factor 1, axonemal [Pan paniscus]

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 163/207 (78%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP +  I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297699333|ref|XP_002826749.1| PREDICTED: dynein assembly factor 1, axonemal [Pongo abelii]

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 162/207 (78%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+ +CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQNLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP +  I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332246859|ref|XP_003272572.1| PREDICTED: LOW QUALITY PROTEIN: dynein assembly factor 1, axonemal [Nomascus leucogenys]

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 163/207 (78%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
           MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct: 88  MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query: 61  DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
           +AQTE+R +++  NL+  +ENL  +Q L+T+NLS+N+I+ IENLS LPVL TL ++HN L
Sbjct: 148 EAQTELRCLFLQMNLLHKIENLEPLQKLNTLNLSNNYIKTIENLSFLPVLNTLQMAHNHL 207

Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
           +T+EDI+HL++C  LS++D+SHN++ D E++ +  +MP+L VL L  NP +  I NYRR 
Sbjct: 208 ETVEDIQHLQECLRLSVLDLSHNRLSDPEILSILESMPDLCVLNLMGNPVIRHIPNYRRT 267

Query: 181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                 +L +LDD PVF KDR CAEAW
Sbjct: 268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
UNIPROTKB|Q8NEP3	725	DNAAF1 "Dynein assembly factor	1.0	0.285	0.584	4e-67
UNIPROTKB|F1MTA8	643	DNAAF1 "Dynein assembly factor	1.0	0.321	0.579	7.4e-66
UNIPROTKB|Q3SYS4	643	DNAAF1 "Dynein assembly factor	1.0	0.321	0.579	7.4e-66
UNIPROTKB|F1S5U4	630	DNAAF1 "Uncharacterized protei	1.0	0.328	0.584	8.5e-65
MGI|MGI:1915520	634	Dnaaf1 "dynein, axonemal assem	1.0	0.326	0.584	9.7e-64
RGD|1310542	633	Dnaaf1 "dynein, axonemal, asse	1.0	0.327	0.584	9.7e-64
UNIPROTKB|B6D5P1	622	Dnaaf1 "Dynein assembly factor	1.0	0.332	0.579	1.6e-63
UNIPROTKB|B6D5P3	622	Dnaaf1 "Dynein assembly factor	1.0	0.332	0.579	1.6e-63
UNIPROTKB|B6D5P6	622	Dnaaf1 "Dynein assembly factor	1.0	0.332	0.579	4.2e-63
UNIPROTKB|E1C8P9	253	DNAAF1 "Uncharacterized protei	1.0	0.818	0.550	1.6e-61

UNIPROTKB|Q8NEP3 DNAAF1 "Dynein assembly factor 1, axonemal" [Homo sapiens (taxid:9606)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 121/207 (58%), Positives = 165/207 (79%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK+SL+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWL++NGI KIENL
Sbjct:    88 MTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENL 147

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
             +AQTE+R +++  NL++ +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct:   148 EAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+EDI+HL++C  L ++D+SHN++ D E++ +  +MP+LRVL L  NP + +I NYRR 
Sbjct:   208 ETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRT 267

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

GO:0000922 "spindle pole" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0035085 "cilium axoneme" evidence=IDA

GO:0045502 "dynein binding" evidence=IMP

GO:0070286 "axonemal dynein complex assembly" evidence=IMP

GO:0060972 "left/right pattern formation" evidence=IMP

GO:0003356 "regulation of cilium beat frequency" evidence=IMP

GO:0036158 "outer dynein arm assembly" evidence=IMP

GO:0036159 "inner dynein arm assembly" evidence=IMP

GO:0003341 "cilium movement" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0044458 "motile cilium assembly" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0030324 "lung development" evidence=IMP

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=IMP

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=IMP

GO:0071910 "determination of liver left/right asymmetry" evidence=IMP

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MTA8 DNAAF1 "Dynein assembly factor 1, axonemal" [Bos taurus (taxid:9913)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 120/207 (57%), Positives = 161/207 (77%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLH+KG+  IENLEEYTGL+CLWLE NGI KIENL
Sbjct:    88 MTKKFLQKLCKQHKLYITPALNDTLYLHYKGFDRIENLEEYTGLRCLWLECNGIQKIENL 147

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
             +AQTE+R +++  NL+  +ENL  +Q LD +N+S+N+I+ IENLSCLPVL TL ++HN L
Sbjct:   148 EAQTELRCLFLQVNLLHKIENLEPLQKLDALNISNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+EDI+HL++C  L ++D+SHN++ D E++ V  +MP+LRVL L  NP +  I NYRR+
Sbjct:   208 ETVEDIQHLRECARLCVLDLSHNKLSDPEILRVLESMPDLRVLNLMGNPVIKNIPNYRRI 267

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   268 LTVRLKHLTYLDDRPVFPKDRACAEAW 294

GO:0060972 "left/right pattern formation" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=IEA

GO:0036159 "inner dynein arm assembly" evidence=IEA

GO:0036158 "outer dynein arm assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003356 "regulation of cilium beat frequency" evidence=IEA

GO:0003341 "cilium movement" evidence=IEA

UNIPROTKB|Q3SYS4 DNAAF1 "Dynein assembly factor 1, axonemal" [Bos taurus (taxid:9913)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 120/207 (57%), Positives = 161/207 (77%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLH+KG+  IENLEEYTGL+CLWLE NGI KIENL
Sbjct:    88 MTKKFLQKLCKQHKLYITPALNDTLYLHYKGFDRIENLEEYTGLRCLWLECNGIQKIENL 147

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
             +AQTE+R +++  NL+  +ENL  +Q LD +N+S+N+I+ IENLSCLPVL TL ++HN L
Sbjct:   148 EAQTELRCLFLQVNLLHKIENLEPLQKLDALNISNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+EDI+HL++C  L ++D+SHN++ D E++ V  +MP+LRVL L  NP +  I NYRR+
Sbjct:   208 ETVEDIQHLRECARLCVLDLSHNKLSDPEILRVLESMPDLRVLNLMGNPVIKNIPNYRRI 267

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   268 LTVRLKHLTYLDDRPVFPKDRACAEAW 294

GO:0035085 "cilium axoneme" evidence=ISS

GO:0045502 "dynein binding" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

UNIPROTKB|F1S5U4 DNAAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 121/207 (58%), Positives = 158/207 (76%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  LRK+CK +KLY+TP+LND LYLHFKG+  IENL+EYTGL+CLWLE NGI KIENL
Sbjct:    88 MTKTFLRKLCKQHKLYMTPALNDTLYLHFKGFDRIENLDEYTGLRCLWLECNGIQKIENL 147

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
             +AQTE+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HN L
Sbjct:   148 EAQTELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHL 207

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T++DI+HLK+C  L ++D+SHN++ D E++ V  +M +LRVL L  NP    I NYRR 
Sbjct:   208 ETVQDIQHLKECLKLCVLDLSHNKLSDPEILSVLESMADLRVLNLMGNPVTRTIPNYRRT 267

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   268 VTVRLKHLTYLDDRPVFPKDRACAEAW 294

GO:0060972 "left/right pattern formation" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=IEA

GO:0036159 "inner dynein arm assembly" evidence=IEA

GO:0036158 "outer dynein arm assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003356 "regulation of cilium beat frequency" evidence=IEA

GO:0003341 "cilium movement" evidence=IEA

MGI|MGI:1915520 Dnaaf1 "dynein, axonemal assembly factor 1" [Mus musculus (taxid:10090)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/207 (58%), Positives = 156/207 (75%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct:    82 MTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
              AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct:   142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+ DIEHL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct:   202 ETVADIEHLRECLRLCVLDLSHNALSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   262 VTVRLKHLTYLDDRPVFPKDRACAEAW 288

GO:0001947 "heart looping" evidence=ISO

GO:0003341 "cilium movement" evidence=ISO

GO:0003356 "regulation of cilium beat frequency" evidence=ISO

GO:0005929 "cilium" evidence=IEA

GO:0030324 "lung development" evidence=ISO

GO:0035085 "cilium axoneme" evidence=ISO

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=ISO

GO:0036159 "inner dynein arm assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=ISO

GO:0045502 "dynein binding" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060972 "left/right pattern formation" evidence=ISO

GO:0070286 "axonemal dynein complex assembly" evidence=ISO

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

RGD|1310542 Dnaaf1 "dynein, axonemal, assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/207 (58%), Positives = 155/207 (74%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct:    82 MTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
              AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct:   142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+ DIEHL++C  L ++D+SHN + D E++ V   MP LRVL L  NP    I NYRR 
Sbjct:   202 ETVADIEHLRECLQLCVLDLSHNSLSDPEILSVLETMPCLRVLNLMGNPVTKHIPNYRRT 261

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                   +L +LDD PVF KDR CAEAW
Sbjct:   262 VTVRLKHLTYLDDRPVFPKDRACAEAW 288

GO:0001947 "heart looping" evidence=ISO

GO:0003341 "cilium movement" evidence=IEA;ISO

GO:0003356 "regulation of cilium beat frequency" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0030324 "lung development" evidence=ISO

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=IEA;ISO

GO:0036159 "inner dynein arm assembly" evidence=IEA;ISO

GO:0044458 "motile cilium assembly" evidence=IEA;ISO

GO:0045502 "dynein binding" evidence=ISO;ISS

GO:0060271 "cilium morphogenesis" evidence=ISO;ISS

GO:0060972 "left/right pattern formation" evidence=IEA;ISO

GO:0070286 "axonemal dynein complex assembly" evidence=ISO

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

UNIPROTKB|B6D5P1 Dnaaf1 "Dynein assembly factor 1, axonemal" [Peromyscus polionotus (taxid:42413)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 120/207 (57%), Positives = 155/207 (74%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct:    82 MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
              AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct:   142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+ DI+HL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct:   202 ETVADIQHLRECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                    L +LDD PVF KDR CAEAW
Sbjct:   262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

GO:0035085 "cilium axoneme" evidence=ISS

GO:0045502 "dynein binding" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

UNIPROTKB|B6D5P3 Dnaaf1 "Dynein assembly factor 1, axonemal" [Peromyscus leucopus (taxid:10041)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 120/207 (57%), Positives = 155/207 (74%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct:    82 MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
              AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct:   142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+ DI+HL++C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct:   202 ETVADIQHLRECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                    L +LDD PVF KDR CAEAW
Sbjct:   262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

GO:0035085 "cilium axoneme" evidence=ISS

GO:0045502 "dynein binding" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

UNIPROTKB|B6D5P6 Dnaaf1 "Dynein assembly factor 1, axonemal" [Peromyscus californicus (taxid:42520)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 120/207 (57%), Positives = 154/207 (74%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
             MTK  L+K+CK +KLY+TP+LND LYLHFKG+  IENLEEYTGL+CLWLE NGI +IENL
Sbjct:    82 MTKEFLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIENL 141

Query:    61 DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL 120
              AQ+E+R +++  NL+  +ENL  +Q LD +NLS+N+I+ IENLSCLPVL TL ++HNRL
Sbjct:   142 QAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRL 201

Query:   121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
             +T+ DI+HL +C  L ++D+SHN + D E++ V  +MP LRVL L  NP    I NYRR 
Sbjct:   202 ETVADIQHLGECLRLCVLDLSHNMLSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRT 261

Query:   181 FINLCVNLRHLDDYPVFDKDRKCAEAW 207
                    L +LDD PVF KDR CAEAW
Sbjct:   262 VTVRLKQLTYLDDRPVFPKDRACAEAW 288

GO:0035085 "cilium axoneme" evidence=ISS

GO:0045502 "dynein binding" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

UNIPROTKB|E1C8P9 DNAAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 115/209 (55%), Positives = 156/209 (74%)

Query:     1 MTKASLRKICKDNKLYLTPSLNDVLYLHFK-GYTVIENLEEYTGLKCLWLENNGISKIEN 59
             MTK  L+ ICK +KLYLTPSLND LYLH+K G+  +ENLEEYTGL+CLWLE NG++KIEN
Sbjct:     1 MTKKILQDICKQHKLYLTPSLNDTLYLHYKAGFDRLENLEEYTGLRCLWLECNGLTKIEN 60

Query:    60 LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNR 119
             L+A TE+R +Y+  NL+  +ENL  +Q LD++NL++N+++ IENLSCL VL TL ++HN+
Sbjct:    61 LEALTELRCLYLQLNLINRIENLESLQKLDSLNLNNNYVKTIENLSCLKVLNTLQIAHNK 120

Query:   120 LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR 179
             L+T+EDI+HL++CP +S++D+SHN + D  ++ +   MP L VL L  N  + KI NYR+
Sbjct:   121 LETVEDIQHLQECPSISVLDLSHNNLSDPNIVTILETMPNLHVLNLMGNQVIKKITNYRK 180

Query:   180 MFINLCVNLRHLDDYPVFDKD-RKCAEAW 207
                     L +LDD PVF KD R CAEAW
Sbjct:   181 TLTVRLKQLTYLDDRPVFPKDSRACAEAW 209

GO:0003341 "cilium movement" evidence=IEA

GO:0003356 "regulation of cilium beat frequency" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0036158 "outer dynein arm assembly" evidence=IEA

GO:0036159 "inner dynein arm assembly" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0060972 "left/right pattern formation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AYH9	DAAF1_RAT	No assigned EC number	0.5845	1.0	0.3270	yes	N/A
Q7PK92	DAAF1_ANOGA	No assigned EC number	0.5598	1.0	0.2274	yes	N/A
Q3SYS4	DAAF1_BOVIN	No assigned EC number	0.5797	1.0	0.3219	yes	N/A
Q9D2H9	DAAF1_MOUSE	No assigned EC number	0.5845	1.0	0.3264	yes	N/A
Q8NEP3	DAAF1_HUMAN	No assigned EC number	0.5845	1.0	0.2855	yes	N/A
Q7ZV84	DAAF1_DANRE	No assigned EC number	0.5507	1.0	0.3729	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 15  LYLTPSLNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDAQ-TEMRSIYMH 72
           + L  S    L L       +   L     LK L L  N +S +  L +  + + ++ + 
Sbjct: 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194

Query: 73  HNLVKVMENL-SHMQLLDTINLSHNFIEK-IENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
            N +  +      +  L+ ++LS+N I + + +LS L  L  L LS+N+L+ + +   + 
Sbjct: 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES--IG 252

Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           +   L  +D+S+NQI     I   G++  LR L LS N 
Sbjct: 253 NLSNLETLDLSNNQISS---ISSLGSLTNLRELDLSGNS 288

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 88  LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEH 128
           L+T++LS+N I  +  LS LP L TL LS N++  +  + +
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 88  LDTINLSHNFIEKIENLSC--LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
           L +++LS+N +  I + +   LP L+ L LS N L +I   E     P L  +D+S N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP-EAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 88  LDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
           L+ ++LS N         L  L  L  L LS N+L + E  + L  C  L  +D+SHNQ+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVSLDLSHNQL 535

Query: 146 EDEEVIEVFGAMPELRVLTLSHNPCVGKI-KNYRRMFINLCVNLRH 190
             + +   F  MP L  L LS N   G+I KN   +   + VN+ H
Sbjct: 536 SGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           L++L LS+NRL  I D    K  P L ++D+S N +      E F  +P LR L LS N 
Sbjct: 2   LKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 6e-04
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           L TL LS+N+   I D+  L + P L  +D+S N+I D   + 
Sbjct: 3   LETLDLSNNQ---ITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 67  RSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRL 120
           +S+ + +N + V+ +     +  L  ++LS N +  I     S LP LR+L LS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG4194|consensus	873		99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.61
KOG0617|consensus	264		99.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.57
KOG4194|consensus	873		99.56
KOG0617|consensus	264		99.51
KOG0444|consensus	1255		99.44
KOG0444|consensus	1255		99.43
KOG1259|consensus	490		99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
KOG0472|consensus	565		99.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.22
KOG0472|consensus	565		99.22
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.21
KOG1644|consensus	233		99.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.18
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.17
KOG0532|consensus	722		99.15
KOG1259|consensus	490		99.14
KOG0618|consensus	1081		99.12
KOG3207|consensus	505		99.11
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.09
KOG4237|consensus	498		99.07
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
KOG2982|consensus	418		99.02
KOG0618|consensus	1081		98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG2123|consensus	388		98.96
KOG0532|consensus	722		98.93
KOG4237|consensus	498		98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
KOG3207|consensus	505		98.8
KOG1859|consensus	1096		98.8
KOG0531|consensus	414		98.79
KOG1859|consensus	1096		98.79
KOG0531|consensus	414		98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG1909|consensus	382		98.75
KOG1909|consensus	382		98.75
PLN03150	623	hypothetical protein; Provisional	98.62
KOG4658|consensus	889		98.56
PLN03150	623	hypothetical protein; Provisional	98.51
KOG1644|consensus	233		98.44
KOG4579|consensus	177		98.42
KOG3665|consensus	699		98.37
KOG2120|consensus	419		98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG2739|consensus	260		98.33
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG2120|consensus	419		98.27
KOG4579|consensus	177		98.21
KOG3665|consensus	699		98.1
KOG2123|consensus	388		97.98
KOG2739|consensus	260		97.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.93
KOG4658|consensus	889		97.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.72
KOG2982|consensus	418		97.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.99
PRK15386	426	type III secretion protein GogB; Provisional	96.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.64
PRK15386	426	type III secretion protein GogB; Provisional	96.43
KOG1947|consensus	482		96.22
KOG1947|consensus	482		95.8
KOG4341|consensus	483		95.47
KOG3763|consensus	585		95.2
KOG3864|consensus	221		95.07
KOG4308|consensus	478		94.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.1
KOG4341|consensus	483		92.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.58
KOG3864|consensus	221		92.51
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.74
smart00370	26	LRR Leucine-rich repeats, outliers.	89.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.68
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.9
KOG3763|consensus	585		86.53
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.42

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.81  E-value=1.5e-20  Score=133.83  Aligned_cols=155  Identities=35%  Similarity=0.528  Sum_probs=67.3

Q ss_pred             cCCccCccCCccCCCCCEEEeecCccccccCCc-cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccC
Q psy10233         51 NNGISKIENLDAQTEMRSIYMHHNLVKVMENLS-HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL  129 (207)
Q Consensus        51 ~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l  129 (207)
                      .+.|+..+.+....++++|++++|.|+.++.+. .+.+|+.|++++|.++.+..+..++.|+.|++++|.|++++. ...
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~-~l~   84 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE-GLD   84 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-HHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-chH
Confidence            344445555555566788888888887777766 477888888888888888777788888999999998887643 122


Q ss_pred             CCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233        130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW  207 (207)
Q Consensus       130 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  207 (207)
                      ..+++|++|++++|.|.+......++.+++|+.|++.+|+++ ..+.++..++..+|+|+.||...++..+|..|+.|
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~  161 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKL  161 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-B-------
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHHHhcccccc
Confidence            457889999999999988665677789999999999999987 56888999999999999999999999998888765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=9.4e-17  Score=142.99  Aligned_cols=181  Identities=21%  Similarity=0.228  Sum_probs=101.2

Q ss_pred             HHhhhcCCccCC-CCCCeEEeecCCCc--CccCccCCCCCCEEEeecCCccC-ccC--CccCCCCCEEEeecCccccccC
Q psy10233          8 KICKDNKLYLTP-SLNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGISK-IEN--LDAQTEMRSIYMHHNLVKVMEN   81 (207)
Q Consensus         8 ~~c~~~~~~~~~-~~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~-~~~--~~~l~~L~~L~l~~n~~~~~~~   81 (207)
                      ..|.|.|+.|.. ..+..++++.+++.  ..+.+..+++|+.|++++|.+.. +|.  +..+.+|++|++++|.++....
T Consensus        56 ~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  135 (968)
T PLN00113         56 DVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP  135 (968)
T ss_pred             CCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC
Confidence            478899999863 34555778887764  23567788888888888887763 443  3356677777777666542222


Q ss_pred             CccccCCcEEecCCCcccc-cc-CCC------------------------CCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233         82 LSHMQLLDTINLSHNFIEK-IE-NLS------------------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLL  135 (207)
Q Consensus        82 ~~~~~~L~~L~l~~~~~~~-~~-~~~------------------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L  135 (207)
                      ...+++|++|++++|.+.. +| .+.                        .+++|+.|++++|.+.+. .+..+..+++|
T Consensus       136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L  214 (968)
T PLN00113        136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSL  214 (968)
T ss_pred             ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCc
Confidence            2334445555555554432 12 234                        444455555554444331 11344445555


Q ss_pred             cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +.|++++|.+.+. .+..++.+++|+.|++++|.+.+.+|..    +..+++|+.|++.
T Consensus       215 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~  268 (968)
T PLN00113        215 KWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSS----LGNLKNLQYLFLY  268 (968)
T ss_pred             cEEECcCCccCCc-CChhHhcCCCCCEEECcCceeccccChh----HhCCCCCCEEECc
Confidence            5555555555433 3444555556666666665555555543    4555666655554

>KOG4194|consensus

Probab=99.65  E-value=1.1e-16  Score=129.62  Aligned_cols=171  Identities=23%  Similarity=0.334  Sum_probs=134.1

Q ss_pred             cCCCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccC-CCCCEEEeecCcccccc--CCccccCCcEE
Q psy10233         17 LTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQ-TEMRSIYMHHNLVKVME--NLSHMQLLDTI   91 (207)
Q Consensus        17 ~~~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~--~~~~~~~L~~L   91 (207)
                      ..|.+.+.+++++|.+..+  ..+.++++|+++.+.+|.+..+|.++.. .+++.|++..|.|..+.  .++.++.|+.|
T Consensus        75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL  154 (873)
T ss_pred             cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence            4577888899999988654  5678999999999999999999987655 55999999999887664  47788899999


Q ss_pred             ecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233         92 NLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus        92 ~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      ||+.|.++.+  +.++.-.++++|++++|.|+.+.. ..+..+.+|..|-+++|+++.. .+..|+.+++|+.|++..|.
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccc
Confidence            9999998877  456666889999999999988655 6788888899999999999886 36777889999999999888


Q ss_pred             cccchhhHHHHHHHhCCcceeccC
Q psy10233        170 CVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      +. . -.+.  -+..+++|+.|.+
T Consensus       233 ir-i-ve~l--tFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  233 IR-I-VEGL--TFQGLPSLQNLKL  252 (873)
T ss_pred             ee-e-ehhh--hhcCchhhhhhhh
Confidence            64 1 2121  2556666655544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.61  E-value=3.6e-15  Score=132.95  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             CCCCCEEEeecCCccC-cc-CCccCCCCCEEEeecCccc--cccCCccccCCcEEecCCCccccc-c-CCCCCCCCcEEE
Q psy10233         41 YTGLKCLWLENNGISK-IE-NLDAQTEMRSIYMHHNLVK--VMENLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLH  114 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~  114 (207)
                      +++|++|++++|.+.. .| .++.+++|++|++++|.+.  .+..+..+++|++|++++|.+... | .+..+++|+.|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            3444444444444432 12 2445555555555555542  112344555555555555544322 2 244445555555


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +++|.+.+. .+..+..+++|++|++++|.+.+. .+..++.+++|+.|++++|.+.+.+|
T Consensus       219 L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        219 LGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CcCCccCCc-CChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCc
Confidence            555554431 112344444555555555544432 33444444444444444444444333

>KOG0617|consensus

Probab=99.58  E-value=2.6e-17  Score=114.56  Aligned_cols=149  Identities=21%  Similarity=0.339  Sum_probs=128.3

Q ss_pred             eEEeecCCCc-CccCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccc
Q psy10233         24 VLYLHFKGYT-VIENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        24 ~l~l~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~  100 (207)
                      -+.+++|.++ +++.+..+.+|++|++++|+++++| .+.++++|+.|+++.|.+...+ +|+.++-|+.||+.+|++..
T Consensus        37 rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   37 RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence            3678888886 4578999999999999999999986 5899999999999999886664 69999999999999998854


Q ss_pred             --cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233        101 --IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       101 --~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                        +| .+..+..|+.|.+++|.++-+++  ..+.+++|++|.+..|.+..  .|..++.++.|+.|++.+|++. .+|+.
T Consensus       117 ~~lpgnff~m~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccceee-ecChh
Confidence              34 47778899999999999877655  78899999999999999976  6888899999999999999976 66764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.57  E-value=1.3e-15  Score=108.57  Aligned_cols=140  Identities=29%  Similarity=0.413  Sum_probs=57.5

Q ss_pred             eecCCCcCccCccCCCCCCEEEeecCCccCccCCc-cCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc-CC
Q psy10233         27 LHFKGYTVIENLEEYTGLKCLWLENNGISKIENLD-AQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE-NL  104 (207)
Q Consensus        27 l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~  104 (207)
                      +..+.++..+.+.+..++++|++.+|.|..++.++ .+.+|+.|++++|.++.++++..++.|++|++++|.++.++ .+
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccch
Confidence            44445555566667777899999999999888776 57889999999999998888888999999999999998874 33


Q ss_pred             -CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcC
Q psy10233        105 -SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLS  166 (207)
Q Consensus       105 -~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~  166 (207)
                       ..+++|+.|.+++|.|.++.....+..+++|+.|++.+|+++....  ...+..+|+|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             3578999999999999887777788889999999999998886321  3466789999998854

>KOG4194|consensus

Probab=99.56  E-value=7e-16  Score=124.95  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             EEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccc
Q psy10233         25 LYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK   77 (207)
Q Consensus        25 l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~   77 (207)
                      +.+.+|.++.+  ..+.++.+|..|-++.|++..+|.  |..+++|+.|++.+|.++
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            55666665543  234444455555555555555432  444555555555555443

>KOG0617|consensus

Probab=99.51  E-value=3.5e-16  Score=108.96  Aligned_cols=158  Identities=18%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             cCCCcCccCccCCCCCCEEEeecCCccCc-cCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCC
Q psy10233         29 FKGYTVIENLEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLS  105 (207)
Q Consensus        29 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~  105 (207)
                      ...+..++.+..+.+.+.|-+++|.+..+ |.+..+.+|+.|++.+|+++.++ +++.++.|+.|+++-|.+...| .++
T Consensus        20 iSsf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   20 ISSFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             cccHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            33445667778888999999999999988 56999999999999999998765 6899999999999999988886 699


Q ss_pred             CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC  185 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  185 (207)
                      .++.|+.|++..|++.+...+..+-.+..|+.|+++.|.+.-  +|.-++.+++|+.|.+.+|.+. ..|..    ++.+
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll-~lpke----ig~l  172 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLL-SLPKE----IGDL  172 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchh-hCcHH----HHHH
Confidence            999999999999998876565677788899999999999986  5777889999999999999977 67765    4445


Q ss_pred             CcceeccC
Q psy10233        186 VNLRHLDD  193 (207)
Q Consensus       186 ~~L~~L~~  193 (207)
                      ..|+.|.+
T Consensus       173 t~lrelhi  180 (264)
T KOG0617|consen  173 TRLRELHI  180 (264)
T ss_pred             HHHHHHhc
Confidence            55554443

>KOG0444|consensus

Probab=99.44  E-value=1.3e-14  Score=119.02  Aligned_cols=147  Identities=27%  Similarity=0.304  Sum_probs=81.7

Q ss_pred             CeEEeecCCCc-CccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCcc
Q psy10233         23 DVLYLHFKGYT-VIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        23 ~~l~l~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~   98 (207)
                      .+++++.|.++ .+..+..-+++-+|++++|.|..+|.  +..+..|-+|++++|.+..+ |++..+.+|++|.+++|.+
T Consensus       106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            34555555553 33445555555556666666665543  44555566666666666433 4456666677777777766


Q ss_pred             ccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233         99 EKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus        99 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ..+  ..++.+.+|+.|.++++.-+-.-.+..+..+.+|+.+|++.|.+..  .|+.+..+++|+.|++|+|.++
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCcee
Confidence            544  3444555555555555532221122345555566666666666655  4555556666666666666554

>KOG0444|consensus

Probab=99.43  E-value=9.2e-15  Score=119.80  Aligned_cols=165  Identities=21%  Similarity=0.253  Sum_probs=130.0

Q ss_pred             EeecCCC---cCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233         26 YLHFKGY---TVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        26 ~l~~~~~---~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~   99 (207)
                      ....|++   -+++++..+..|.+||+++|++.++|. +....++-.|++++|+|..+|.  +-+++-|-.||+++|.+.
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            3444444   356778888899999999999988874 7777888899999999877764  567788888999999988


Q ss_pred             ccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233        100 KIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR  178 (207)
Q Consensus       100 ~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  178 (207)
                      .+| ....+..|+.|++++|.+.-+.. ..+..+.+|+.|++++..-+-..+|..+..+.+|..+|+|.|.+. .+|.. 
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-  240 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-  240 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH-
Confidence            874 57778889999999998755422 556677788888888887665567888888999999999999976 67775 


Q ss_pred             HHHHHhCCcceeccCccc
Q psy10233        179 RMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       179 ~~~~~~~~~L~~L~~~~~  196 (207)
                         +-++++|+.|+++.-
T Consensus       241 ---ly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  241 ---LYKLRNLRRLNLSGN  255 (1255)
T ss_pred             ---HhhhhhhheeccCcC
Confidence               568899999988753

>KOG1259|consensus

Probab=99.43  E-value=1.3e-14  Score=109.38  Aligned_cols=144  Identities=26%  Similarity=0.411  Sum_probs=121.2

Q ss_pred             ccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc-cCCCCCCCCcEEEc
Q psy10233         38 LEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHL  115 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l  115 (207)
                      +...+.|+++|+++|.|..+. +..-.|+++.|+++.|++..+..+..+++|+.||+++|.+..+ .+-..+.+++.|.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            345567999999999999885 4666799999999999999998899999999999999998776 34445678899999


Q ss_pred             CCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233        116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC  185 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  185 (207)
                      ++|.+.++   +.+..+-+|..||+++|+|...+-...++.+|.|+++.+.+|++. .++++++.+++..
T Consensus       360 a~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdYRTKVLa~F  425 (490)
T KOG1259|consen  360 AQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDYRTKVLARF  425 (490)
T ss_pred             hhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchHHHHHHHHH
Confidence            99999775   356777889999999999998766778899999999999999987 5677776655443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=9.4e-12  Score=106.81  Aligned_cols=121  Identities=21%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             CCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCc
Q psy10233         44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI  123 (207)
Q Consensus        44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  123 (207)
                      |+.|++++|.+..+|.+  .++|+.|++++|.++.++.+  .++|+.|++++|.+..+|..  .++|+.|++++|.++++
T Consensus       344 Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        344 LQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSL  417 (788)
T ss_pred             cceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCC
Confidence            44444444444444332  12344444444444433322  24577778887777766543  35788888888888765


Q ss_pred             cccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233        124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       124 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                      +.  .   ..+|+.|++++|.++.  +|..+..+++|+.+++++|++.+..+..
T Consensus       418 P~--l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        418 PM--L---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             Cc--c---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHH
Confidence            43  1   2467889999999986  6777888999999999999999877764

>KOG0472|consensus

Probab=99.31  E-value=2.6e-14  Score=111.33  Aligned_cols=154  Identities=24%  Similarity=0.314  Sum_probs=116.8

Q ss_pred             CCCeEEeecCCCcC-ccCccCCCCCCE-EEeecCCccCccC-CccCCCCCEEEeecCcccccc-CCccccCCcEEecCCC
Q psy10233         21 LNDVLYLHFKGYTV-IENLEEYTGLKC-LWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHN   96 (207)
Q Consensus        21 ~~~~l~l~~~~~~~-~~~l~~l~~L~~-L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~   96 (207)
                      .++.++++.|.+.. |..+..++.+.+ ++++.|.+..++. +..+++|..|++++|.+..+| .++.+..|+.++++.|
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc
Confidence            34556777777643 344555544433 5566666666654 678899999999999887765 4677778999999999


Q ss_pred             ccccccCC-CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         97 FIEKIENL-SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        97 ~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +|.-+|.+ ..+..++.+-.++|.+..++. ..++.+.+|.+||+.+|.+..  +|..+++|++|++|.+++|+|.  .|
T Consensus       469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpfr--~P  543 (565)
T KOG0472|consen  469 RFRMLPECLYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPFR--QP  543 (565)
T ss_pred             ccccchHHHhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCCchhh--CChhhccccceeEEEecCCccC--CC
Confidence            88877753 344566777777789988755 568999999999999999987  6888999999999999999986  45


Q ss_pred             hHHH
Q psy10233        176 NYRR  179 (207)
Q Consensus       176 ~~~~  179 (207)
                      +...
T Consensus       544 r~~i  547 (565)
T KOG0472|consen  544 RHQI  547 (565)
T ss_pred             HHHH
Confidence            5443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.26  E-value=9.3e-12  Score=97.72  Aligned_cols=132  Identities=21%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             CCCCEEEeecCccccc------cCCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---ccc
Q psy10233         64 TEMRSIYMHHNLVKVM------ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEH  128 (207)
Q Consensus        64 ~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~  128 (207)
                      ++|+.+++++|.++..      ..+..+++|++|++++|.++..      +.+...++|+.|++++|.+++...   ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4555555555554311      1133444555556555555421      122333466666666665543221   122


Q ss_pred             CCCCCCccEEEccCCCCCChhhHHHhcc----CCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        129 LKDCPLLSIVDVSHNQIEDEEVIEVFGA----MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +..+++|+.|++++|.+++.........    .+.|+.|++++|.+++.........+..+++|++++.+.
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence            4445566666666666665333332222    246666666666655322222222344556666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.22  E-value=4.4e-11  Score=102.78  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      ...+++++|.++.++.  ..++|+.|++++|.+..+|.+.  .+|+.|++++|.++.++.+  ..+|+.|++++|.++.+
T Consensus       284 L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        284 LCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASL  357 (788)
T ss_pred             cCEEECcCCccccccc--cccccceeECCCCccccCCCCc--ccccccccccCcccccccc--ccccceEecCCCccCCC
Confidence            3456666776665543  2356778888888777665421  2344445555544433321  12444555555544443


Q ss_pred             cCCC------------------CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233        102 ENLS------------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL  163 (207)
Q Consensus       102 ~~~~------------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l  163 (207)
                      |...                  ...+|+.|++++|.++.++.  .   .++|+.|++++|.++.  +|..   ...|+.|
T Consensus       358 P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~--l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L  427 (788)
T PRK15387        358 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--L---PSELKELMVSGNRLTS--LPML---PSGLLSL  427 (788)
T ss_pred             CCCCcccceehhhccccccCcccccccceEEecCCcccCCCC--c---ccCCCEEEccCCcCCC--CCcc---hhhhhhh
Confidence            3211                  11356667777776665433  1   2467777888887775  3432   2356778


Q ss_pred             EcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        164 TLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       164 ~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++++|.+. .+|..    +..+++|+.|++++
T Consensus       428 ~Ls~NqLt-~LP~s----l~~L~~L~~LdLs~  454 (788)
T PRK15387        428 SVYRNQLT-RLPES----LIHLSSETTVNLEG  454 (788)
T ss_pred             hhccCccc-ccChH----HhhccCCCeEECCC
Confidence            88888876 67764    56778888887754

>KOG0472|consensus

Probab=99.22  E-value=1e-13  Score=108.05  Aligned_cols=134  Identities=23%  Similarity=0.361  Sum_probs=67.9

Q ss_pred             ccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCccccccCCCCCCCCcE
Q psy10233         35 IENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRT  112 (207)
Q Consensus        35 ~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  112 (207)
                      ++++..+.++..+++.+|++..++. .-.|..|++++...|-++.+ +.++.+.+|+-|++.+|.+..+|+++.+..|.+
T Consensus       153 p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E  232 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE  232 (565)
T ss_pred             chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence            3444444455555555555554422 22244555555555544333 235555555555555555555555555555555


Q ss_pred             EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +.++.|.|+.++. ...++++++..||+..|.++.  .|+.+.-+++|..||+++|.++
T Consensus       233 lh~g~N~i~~lpa-e~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  233 LHVGENQIEMLPA-EHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HHhcccHHHhhHH-HHhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccc
Confidence            5555555544433 344455555555555555554  3444444555555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.21  E-value=1.6e-11  Score=96.36  Aligned_cols=173  Identities=21%  Similarity=0.185  Sum_probs=120.2

Q ss_pred             CCeEEeecCCCcC------ccCccCC-CCCCEEEeecCCccCc------cCCccCCCCCEEEeecCccccc------cCC
Q psy10233         22 NDVLYLHFKGYTV------IENLEEY-TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVKVM------ENL   82 (207)
Q Consensus        22 ~~~l~l~~~~~~~------~~~l~~l-~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~n~~~~~------~~~   82 (207)
                      .+.++++.+.+..      ...+..+ ++|+.|++++|.+...      ..+..+++|++|++++|.++..      ..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            4556777776641      1344566 8899999999988732      1255667899999999988631      224


Q ss_pred             ccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccccccC----CCCCCccEEEccCCCCCChh---
Q psy10233         83 SHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDIEHL----KDCPLLSIVDVSHNQIEDEE---  149 (207)
Q Consensus        83 ~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~l----~~~~~L~~L~l~~n~l~~~~---  149 (207)
                      ..+++|+.|++++|.++..      ..+..+++|+.|++++|.+++.......    ...+.|++|++++|.+++..   
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~  269 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD  269 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence            4567999999999988643      2356678999999999998763221111    23478999999999997532   


Q ss_pred             hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC-CcceeccCc
Q psy10233        150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC-VNLRHLDDY  194 (207)
Q Consensus       150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~~~  194 (207)
                      +...+..++.|+.+++++|.+.+.-.......+... +.|+.++..
T Consensus       270 l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            345566778999999999998855333333344444 677777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644|consensus

Probab=99.20  E-value=1.2e-11  Score=88.20  Aligned_cols=140  Identities=32%  Similarity=0.443  Sum_probs=112.4

Q ss_pred             CCEEEeecCccccccCCcc-ccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233         66 MRSIYMHHNLVKVMENLSH-MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ  144 (207)
Q Consensus        66 L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~  144 (207)
                      -+.+++++..+.....++. ..+...+||++|.+..++.+..++.|..|.+++|.|+.+.+ ..-..+++|..|.+.+|+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcc
Confidence            4455666655544444332 34567899999999888888888999999999999988655 334446789999999999


Q ss_pred             CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233        145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW  207 (207)
Q Consensus       145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  207 (207)
                      +...+..+-+..+|.|+.|.+-+|+++ .-+.++.-++-++|+|+.||.+.++..+|..|+.|
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~  161 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVF  161 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhhhhHHHHHHHHHH
Confidence            988776777889999999999999976 66777777889999999999999999999999876

>PLN03210 Resistant to P

Probab=99.18  E-value=3.7e-10  Score=102.39  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             cCCCCCCEEEeecCC-ccCccCCccCCCCCEEEeecCc-ccc-ccCCccccCCcEEecCCC-ccccccCCCCCCCCcEEE
Q psy10233         39 EEYTGLKCLWLENNG-ISKIENLDAQTEMRSIYMHHNL-VKV-MENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLH  114 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~  114 (207)
                      ..+++|+.++++++. +..+|.+..+++|++|++++|. +.. +..+..+++|+.|++++| .++.+|....+++|+.|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~  710 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN  710 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence            344455555554432 3333444445555555555542 222 223445555666666554 344444433556666666


Q ss_pred             cCCC
Q psy10233        115 LSHN  118 (207)
Q Consensus       115 l~~n  118 (207)
                      +++|
T Consensus       711 Lsgc  714 (1153)
T PLN03210        711 LSGC  714 (1153)
T ss_pred             CCCC
Confidence            6665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.17  E-value=3.8e-10  Score=102.36  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=111.1

Q ss_pred             CCeEEeecCC-CcCccCccCCCCCCEEEeecCC-ccCcc-CCccCCCCCEEEeecC-ccccccCCccccCCcEEecCCCc
Q psy10233         22 NDVLYLHFKG-YTVIENLEEYTGLKCLWLENNG-ISKIE-NLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF   97 (207)
Q Consensus        22 ~~~l~l~~~~-~~~~~~l~~l~~L~~L~l~~~~-l~~~~-~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l~~~~   97 (207)
                      .+.++++.+. ++.++.++.+++|+.|++++|. +..+| .+..+++|+.|++++| .++.++....+++|+.|++++|.
T Consensus       636 Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            3456666553 5667778889999999999874 45555 4788899999999986 45555543467888888888873


Q ss_pred             -cccccCCCCCCCCcEEEcCCCccCCcccccc----------------------------CCCCCCccEEEccCCCCCCh
Q psy10233         98 -IEKIENLSCLPVLRTLHLSHNRLKTIEDIEH----------------------------LKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus        98 -~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----------------------------l~~~~~L~~L~l~~n~l~~~  148 (207)
                       +..+|..  ..+|+.|++++|.++.++....                            ....++|+.|++++|.....
T Consensus       716 ~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~  793 (1153)
T PLN03210        716 RLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE  793 (1153)
T ss_pred             Cccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence             3333432  3567777777777655442100                            01124677788877754433


Q ss_pred             hhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        149 EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       149 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                       +|..++.+++|+.|++++|...+.+|..     ..+++|+.|+++.+
T Consensus       794 -lP~si~~L~~L~~L~Ls~C~~L~~LP~~-----~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        794 -LPSSIQNLHKLEHLEIENCINLETLPTG-----INLESLESLDLSGC  835 (1153)
T ss_pred             -cChhhhCCCCCCEEECCCCCCcCeeCCC-----CCccccCEEECCCC
Confidence             5777788888888888887655566653     15666777766654

syringae 6; Provisional

>KOG0532|consensus

Probab=99.15  E-value=4.3e-13  Score=108.60  Aligned_cols=173  Identities=20%  Similarity=0.236  Sum_probs=98.3

Q ss_pred             cCCCCCCeEEeecCCCcC-ccCccCCCCCCEEEeecCCccCcc-CCccCCC----------------------CCEEEee
Q psy10233         17 LTPSLNDVLYLHFKGYTV-IENLEEYTGLKCLWLENNGISKIE-NLDAQTE----------------------MRSIYMH   72 (207)
Q Consensus        17 ~~~~~~~~l~l~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~----------------------L~~L~l~   72 (207)
                      .+.......+++.|.+.. +.+++.+..|+.+.++.|++..++ .+..+..                      |+.|.++
T Consensus        72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s  151 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS  151 (722)
T ss_pred             ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence            444455566777776643 233444444444444444444442 2444444                      4455555


Q ss_pred             cCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhh
Q psy10233         73 HNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV  150 (207)
Q Consensus        73 ~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  150 (207)
                      +|.++.++ .++..++|..++.+.|.+..+| .+..+.+|+.+++..|.+..++.  .+..+ .|..||++.|.++.  +
T Consensus       152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~--El~~L-pLi~lDfScNkis~--i  226 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--ELCSL-PLIRLDFSCNKISY--L  226 (722)
T ss_pred             cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--HHhCC-ceeeeecccCceee--c
Confidence            55444332 2444444555555555555443 34455555555555555555433  33333 36778888888876  5


Q ss_pred             HHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        151 IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       151 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      |-.|.+|++|+.|-+.+|++..  |.......++..-.++|+.+-+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC--ChHHHHhccceeeeeeecchhc
Confidence            7777788888888888888743  5555556677777777777655

>KOG1259|consensus

Probab=99.14  E-value=5.3e-12  Score=95.52  Aligned_cols=125  Identities=23%  Similarity=0.336  Sum_probs=110.9

Q ss_pred             CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC-ccccCCcEEecCCCcccc
Q psy10233         23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+++++|.++.+.+ +.-.++++.|++++|.+..+..+..+++|..||+++|.+..+.++ ..+.++++|.+++|.+..
T Consensus       287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             hhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence            458899999987754 455699999999999999998899999999999999998777664 367788899999999999


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      ++.+..+.+|..|++++|.|........++.+|.|+++.+.+|.+..
T Consensus       367 LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  367 LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            98899999999999999999988777889999999999999998876

>KOG0618|consensus

Probab=99.12  E-value=2.2e-12  Score=109.54  Aligned_cols=161  Identities=24%  Similarity=0.314  Sum_probs=107.5

Q ss_pred             eecCCCcCc-cCccCCCCCCEEEeecCCccCccC--C-------------------------ccCCCCCEEEeecCccc-
Q psy10233         27 LHFKGYTVI-ENLEEYTGLKCLWLENNGISKIEN--L-------------------------DAQTEMRSIYMHHNLVK-   77 (207)
Q Consensus        27 l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~--~-------------------------~~l~~L~~L~l~~n~~~-   77 (207)
                      ...|.++.+ +.+.+++.|++|++..|.+..+|.  +                         ..++.|+.|++.+|.++ 
T Consensus       294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            334444433 334557777788887777765543  1                         12344555566666663 


Q ss_pred             -cccCCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHh
Q psy10233         78 -VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF  154 (207)
Q Consensus        78 -~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  154 (207)
                       .++.+..+++|+.|+|++|.++.+|+  +.++..|++|++++|+++.++.  .+..++.|++|....|.+..  +| .+
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~--tva~~~~L~tL~ahsN~l~~--fP-e~  448 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD--TVANLGRLHTLRAHSNQLLS--FP-EL  448 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH--HHHhhhhhHHHhhcCCceee--ch-hh
Confidence             33556777888888888888887763  6677888888888888877665  66777788888888888876  56 55


Q ss_pred             ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ..+++|+.+|++.|.+....-..    ..--++|++||+..-
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~----~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPE----ALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhh----hCCCcccceeeccCC
Confidence            68889999999999875322221    111178899988753

>KOG3207|consensus

Probab=99.11  E-value=1.6e-11  Score=96.77  Aligned_cols=183  Identities=20%  Similarity=0.245  Sum_probs=97.2

Q ss_pred             eEEeecCCCcCc----cCccCCCCCCEEEeecCCccCcc-C--CccCCCCCEEEeecCccccc--cC-Ccc---------
Q psy10233         24 VLYLHFKGYTVI----ENLEEYTGLKCLWLENNGISKIE-N--LDAQTEMRSIYMHHNLVKVM--EN-LSH---------   84 (207)
Q Consensus        24 ~l~l~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~-~--~~~l~~L~~L~l~~n~~~~~--~~-~~~---------   84 (207)
                      .++++.|-+...    .-...+++|+.|+++.|.+...- +  -..+++++.|.++.|+++.-  .. ...         
T Consensus       150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L  229 (505)
T KOG3207|consen  150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL  229 (505)
T ss_pred             eecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence            355555544222    22245666777777776655431 1  22445566666666655311  00 122         


Q ss_pred             ---------------ccCCcEEecCCCccccc---cCCCCCCCCcEEEcCCCccCCcccccc-----CCCCCCccEEEcc
Q psy10233         85 ---------------MQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEH-----LKDCPLLSIVDVS  141 (207)
Q Consensus        85 ---------------~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~-----l~~~~~L~~L~l~  141 (207)
                                     +..|++|+|++|++-.+   +..+.++.|..|+++.+.+.++..+..     ...+++|+.|++.
T Consensus       230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~  309 (505)
T KOG3207|consen  230 EANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS  309 (505)
T ss_pred             hcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence                           33455555555554333   334555556666666665555333222     2334566666666


Q ss_pred             CCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhh
Q psy10233        142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEA  206 (207)
Q Consensus       142 ~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~  206 (207)
                      .|.+.++...+.+..+++|+.+....|++..+-......++++.+.|..|+...+.+.+|..||.
T Consensus       310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl  374 (505)
T KOG3207|consen  310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAEL  374 (505)
T ss_pred             cCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhh
Confidence            66665554455555555666666656655443322222345666777777777777888777764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.09  E-value=2e-10  Score=98.93  Aligned_cols=159  Identities=21%  Similarity=0.266  Sum_probs=79.2

Q ss_pred             CCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccC-Cc--------------
Q psy10233         21 LNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN-LS--------------   83 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~--------------   83 (207)
                      ....++++.|++..++. +  ..+|+.|++++|.+..+|. +.  ++|++|++++|.++.++. +.              
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        242 TIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT  317 (754)
T ss_pred             cccEEECcCCccCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccc
Confidence            45567777777765432 2  2467778888777776654 32  467777777776654432 11              


Q ss_pred             -----cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233         84 -----HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus        84 -----~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                           ..++|+.|++++|.++.+|... .++|+.|++++|.++.++.  .+  .++|+.|++++|.++.  +|..+.  .
T Consensus       318 ~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~--LP~~l~--~  388 (754)
T PRK15370        318 ALPETLPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTN--LPENLP--A  388 (754)
T ss_pred             cCCccccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCC--CCHhHH--H
Confidence                 1123444444444444443210 1455555555555544322  11  1345555555555554  222221  2


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      .|+.|++++|.+. .+|.........++.+..|++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEe
Confidence            3555555555544 344433333334444444443

>KOG4237|consensus

Probab=99.07  E-value=8.2e-12  Score=97.31  Aligned_cols=180  Identities=23%  Similarity=0.299  Sum_probs=106.2

Q ss_pred             hhhcCCccCCC----CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeec-Ccccccc
Q psy10233         10 CKDNKLYLTPS----LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHH-NLVKVME   80 (207)
Q Consensus        10 c~~~~~~~~~~----~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~-n~~~~~~   80 (207)
                      |+..|++..|.    ....++++.|+++.++  +++.+++|+.+|+++|.|+.+ | .|..++.+..|-+.+ |.|+.++
T Consensus        53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            55555555443    4456888899887664  578889999999999998877 2 477887777766655 7776553


Q ss_pred             C--CccccCC------------------------cEEecCCCcccccc--CCCCCCCCcEEEcCCCcc------------
Q psy10233         81 N--LSHMQLL------------------------DTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRL------------  120 (207)
Q Consensus        81 ~--~~~~~~L------------------------~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i------------  120 (207)
                      .  |.++..+                        ..|.+.+|.+..++  .+..+..++.+.+..|.+            
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~  212 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD  212 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence            2  4444444                        44444444443331  233333333333333221            


Q ss_pred             -------------------------------------------------CCccccccCCCCCCccEEEccCCCCCChhhH
Q psy10233        121 -------------------------------------------------KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI  151 (207)
Q Consensus       121 -------------------------------------------------~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  151 (207)
                                                                       ....+...++.+++|+.+++++|.++... .
T Consensus       213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~  291 (498)
T KOG4237|consen  213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-D  291 (498)
T ss_pred             HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-h
Confidence                                                             00001122455677777777777777653 5


Q ss_pred             HHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       152 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      .+|.+..+++.|.+..|.+. .+.   ..++..+..|+.|++.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~-~v~---~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLE-FVS---SGMFQGLSGLKTLSLY  330 (498)
T ss_pred             hhhcchhhhhhhhcCcchHH-HHH---HHhhhccccceeeeec
Confidence            66666777777777777654 222   2357777888777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.06  E-value=5.8e-10  Score=96.18  Aligned_cols=158  Identities=20%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ...++++.|.++.++.- -..+|+.|++++|.+..+|. +  ..+|+.|++++|.+..++.. ..++|+.|++++|.+..
T Consensus       201 L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~L~~  276 (754)
T PRK15370        201 ITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFHNKISC  276 (754)
T ss_pred             CcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcCCccCc
Confidence            44555666665543321 12456666666666665543 2  13566666666665544321 12356667777666665


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccc------------cC-----CCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIE------------HL-----KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL  163 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~------------~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l  163 (207)
                      +|.-. .++|+.|++++|.++.++...            .+     .-.++|+.|++++|.++.  ++..+  .++|+.|
T Consensus       277 LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L  351 (754)
T PRK15370        277 LPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS--LPASL--PPELQVL  351 (754)
T ss_pred             ccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc--CChhh--cCcccEE
Confidence            54311 146677777777666543200            00     012456677777776665  34333  2578888


Q ss_pred             EcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        164 TLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       164 ~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++++|.+. .+|...      .+.|+.|+++.
T Consensus       352 ~Ls~N~L~-~LP~~l------p~~L~~LdLs~  376 (754)
T PRK15370        352 DVSKNQIT-VLPETL------PPTITTLDVSR  376 (754)
T ss_pred             ECCCCCCC-cCChhh------cCCcCEEECCC
Confidence            88888776 455421      24666666654

>KOG2982|consensus

Probab=99.02  E-value=2.3e-10  Score=86.50  Aligned_cols=186  Identities=18%  Similarity=0.252  Sum_probs=129.6

Q ss_pred             CCCeEEeecCCCcCccC----ccCCCCCCEEEeecCCccCc-cCC-ccCCCCCEEEeecCcccc--c-cCCccccCCcEE
Q psy10233         21 LNDVLYLHFKGYTVIEN----LEEYTGLKCLWLENNGISKI-ENL-DAQTEMRSIYMHHNLVKV--M-ENLSHMQLLDTI   91 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~----l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~L~~L~l~~n~~~~--~-~~~~~~~~L~~L   91 (207)
                      .+..+++..|.+...++    +.+++.|+.|+++.|++... ..+ ....+|+++-+.+..+..  . ..+..+|.++++
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            34556666666643332    35778888888888877653 333 456778888887776532  2 234567777778


Q ss_pred             ecCCCccccc--------c---C--------------------CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEc
Q psy10233         92 NLSHNFIEKI--------E---N--------------------LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV  140 (207)
Q Consensus        92 ~l~~~~~~~~--------~---~--------------------~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l  140 (207)
                      .++.|+...+        +   .                    ...++++..+-+..|.+.+.........+|.+.-|++
T Consensus       152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL  231 (418)
T ss_pred             hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence            7777744211        0   0                    1123566667777777766555456666777888999


Q ss_pred             cCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH--HHHHHhCCcceeccCcccCHHhhhhhhh
Q psy10233        141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR--RMFINLCVNLRHLDDYPVFDKDRKCAEA  206 (207)
Q Consensus       141 ~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~~~~L~~L~~~~~~~~~~~~~~~  206 (207)
                      +.|.+.++.-.+.+..+++|+.|.++.+++.+.+....  -.+++++++++.|+.+.+...+|.+.|.
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr  299 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSER  299 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHH
Confidence            99999998888999999999999999999887655322  2357999999999999888888766653

>KOG0618|consensus

Probab=98.99  E-value=5.4e-11  Score=101.30  Aligned_cols=125  Identities=26%  Similarity=0.397  Sum_probs=72.8

Q ss_pred             CCCCCEEEeecCCccC--ccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccccccC-CCCCCCCcEEEc
Q psy10233         41 YTGLKCLWLENNGISK--IENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN-LSCLPVLRTLHL  115 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l  115 (207)
                      ++.|+.|.+.+|.+..  +|.+..+.+|+.|++++|.++.+++  +.++..|++|++++|.++.+|. +..++.|+.|..
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            3446666666666654  2556666666666666666655543  4556666666666666666542 445556666666


Q ss_pred             CCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233        116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      .+|.+..+|   .+..++.|+.+|++.|+++....+... ..++|+.||+++|.
T Consensus       438 hsN~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 HSNQLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCCceeech---hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            666655543   344556666666666666654433332 23566666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=2.6e-10  Score=92.30  Aligned_cols=163  Identities=28%  Similarity=0.325  Sum_probs=90.8

Q ss_pred             CCeEEeecCCCcCccCccC-CC-CCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCc-cccCCcEEecCCCc
Q psy10233         22 NDVLYLHFKGYTVIENLEE-YT-GLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLS-HMQLLDTINLSHNF   97 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~-l~-~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~   97 (207)
                      ...+.+..+.++.++.... +. +|+.|++++|.+..++ .+..+++|+.|+++.|.+..++... ..+.|+.+++++|.
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence            3445566666655544333 32 6777777777777663 5666777777777777776665543 66667777777777


Q ss_pred             cccccCCC-CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233         98 IEKIENLS-CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus        98 ~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      +..+|... ....|+.+.+++|.+....  ..+..+..+..+.+..|.+..  ++..++.++.++.|++++|.+. .++.
T Consensus       198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~-~i~~  272 (394)
T COG4886         198 ISDLPPEIELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQIS-SISS  272 (394)
T ss_pred             cccCchhhhhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCceeee--ccchhccccccceecccccccc-cccc
Confidence            76665442 3344666666666322211  133444444445555555543  2444555555666666666554 3332


Q ss_pred             HHHHHHHhCCcceeccCc
Q psy10233        177 YRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       177 ~~~~~~~~~~~L~~L~~~  194 (207)
                           +....+++.++.+
T Consensus       273 -----~~~~~~l~~L~~s  285 (394)
T COG4886         273 -----LGSLTNLRELDLS  285 (394)
T ss_pred             -----ccccCccCEEecc
Confidence                 3444555555544

>KOG2123|consensus

Probab=98.96  E-value=7e-11  Score=88.48  Aligned_cols=118  Identities=30%  Similarity=0.512  Sum_probs=101.7

Q ss_pred             cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233         84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL  163 (207)
Q Consensus        84 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l  163 (207)
                      .+.+.++|+++++++..+.....++.|+.|.|+-|+|+++   ..+..|++|++|+|..|.|.+..-...+.++|+|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3556778899999999888888899999999999999875   3578899999999999999998777888999999999


Q ss_pred             EcCCCccccch-hhHHHHHHHhCCcceeccCcccCHHhhhhh
Q psy10233        164 TLSHNPCVGKI-KNYRRMFINLCVNLRHLDDYPVFDKDRKCA  204 (207)
Q Consensus       164 ~l~~n~~~~~~-~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  204 (207)
                      -+..|+.++.- ++++..++..+|+|++||...++..+...|
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence            99999977654 467777899999999999999988774443

>KOG0532|consensus

Probab=98.93  E-value=8.4e-11  Score=95.59  Aligned_cols=124  Identities=17%  Similarity=0.301  Sum_probs=101.6

Q ss_pred             CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCc
Q psy10233         21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNF   97 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~   97 (207)
                      ...+++++.|.+..+ ..++.+ -|+.|.+++|++..+| .++.+++|..|+.+.|.+..+ +.++.+.+|+.+.+..|.
T Consensus       122 ~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  122 ALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             HHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence            345577888877654 455555 5789999999999886 488889999999999998655 568899999999999999


Q ss_pred             ccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233         98 IEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus        98 ~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~  148 (207)
                      +..+| ++.. -.|..||++.|++..++.  .+..++.|+.|-|.+|.+...
T Consensus       201 l~~lp~El~~-LpLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  201 LEDLPEELCS-LPLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhCCHHHhC-CceeeeecccCceeecch--hhhhhhhheeeeeccCCCCCC
Confidence            98886 4553 357889999999998777  899999999999999999983

>KOG4237|consensus

Probab=98.88  E-value=5.7e-11  Score=92.70  Aligned_cols=84  Identities=25%  Similarity=0.337  Sum_probs=61.6

Q ss_pred             CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233        104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN  183 (207)
Q Consensus       104 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  183 (207)
                      +..+++|+.+++++|+++.+.+ ..+.....+++|.+..|.+... -..+|.++..|+.|++.+|.++...|..    +.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~a----F~  343 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGA----FQ  343 (498)
T ss_pred             HhhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEEeccc----cc
Confidence            3445688999999999888655 6788888888888888888765 3567778888888888888887666653    44


Q ss_pred             hCCcceeccC
Q psy10233        184 LCVNLRHLDD  193 (207)
Q Consensus       184 ~~~~L~~L~~  193 (207)
                      .+..|..|++
T Consensus       344 ~~~~l~~l~l  353 (498)
T KOG4237|consen  344 TLFSLSTLNL  353 (498)
T ss_pred             ccceeeeeeh
Confidence            5555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2.8e-09  Score=62.92  Aligned_cols=59  Identities=34%  Similarity=0.553  Sum_probs=32.9

Q ss_pred             CCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233        109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus       109 ~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      +|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .++.+..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555433 4555556666666666655543 24455556666666666554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=2.8e-09  Score=86.29  Aligned_cols=150  Identities=27%  Similarity=0.324  Sum_probs=122.6

Q ss_pred             CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCccCCc-cCCCCCEEEeecCccccccCC-ccccCCcEEecCCCc
Q psy10233         21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLD-AQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNF   97 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~   97 (207)
                      ....++++.|.+..+ ..+..+++|+.|++++|++..++... ..+.|+.|++++|.++.++.. .....|+++.+++|.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence            355688999999877 58899999999999999999997754 889999999999999888775 355669999999995


Q ss_pred             -cccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         98 -IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        98 -~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                       +.....+..+..+..+.+..|.+...+  ..+..++.++.+++++|.++..  .. ++....++.+++++|.+....+
T Consensus       221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         221 IIELLSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ceecchhhhhcccccccccCCceeeecc--chhccccccceecccccccccc--cc-ccccCccCEEeccCccccccch
Confidence             444456777788888888888876642  3677788899999999999984  33 7788999999999998765433

>KOG3207|consensus

Probab=98.80  E-value=5.7e-10  Score=88.12  Aligned_cols=150  Identities=17%  Similarity=0.123  Sum_probs=104.2

Q ss_pred             CCeEEeecCCCcCcc---CccCCCCCCEEEeecCCccCcc---C-CccCCCCCEEEeecCccccccC---CccccCCcEE
Q psy10233         22 NDVLYLHFKGYTVIE---NLEEYTGLKCLWLENNGISKIE---N-LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTI   91 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~---~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L   91 (207)
                      .+...++...+..+.   ....+++++.|+++.|-+....   . ...+|+|+.|+++.|.+..+..   -..+++|+.|
T Consensus       123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L  202 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL  202 (505)
T ss_pred             hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence            334455555554443   5678999999999999776542   2 5679999999999998865532   2256788899


Q ss_pred             ecCCCccccc---------cCC------------------CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233         92 NLSHNFIEKI---------ENL------------------SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ  144 (207)
Q Consensus        92 ~l~~~~~~~~---------~~~------------------~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~  144 (207)
                      .++.|+++.-         |.+                  ..++.|+.|++++|.+.+++......+++.|+.|+++.++
T Consensus       203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence            9999988631         210                  0124677778888777665554566778888888888887


Q ss_pred             CCChhhHHH-----hccCCCCcEEEcCCCccc
Q psy10233        145 IEDEEVIEV-----FGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       145 l~~~~~~~~-----~~~~~~L~~l~l~~n~~~  171 (207)
                      +.+..+++.     ...+++|+.|++..|++.
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCccc
Confidence            776544444     446678888888888874

>KOG1859|consensus

Probab=98.80  E-value=3e-11  Score=100.71  Aligned_cols=126  Identities=25%  Similarity=0.343  Sum_probs=63.6

Q ss_pred             CCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCC-CCCcEEEcCCCcc
Q psy10233         43 GLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCL-PVLRTLHLSHNRL  120 (207)
Q Consensus        43 ~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~n~i  120 (207)
                      +|...++++|.+..+. ++.-++.++.|+++.|.++.+..+..++.|+.||+++|.+..+|.++.- .+|..|++.+|.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence            3444455555554442 2444455555555555555555555555555555555555555433322 2355555555555


Q ss_pred             CCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       121 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +++.   .+..+.+|+.||+++|-+.+..-...+..+.+|..|.+.+|++.
T Consensus       245 ~tL~---gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  245 TTLR---GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             Hhhh---hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4432   23334455555555555554333333344455556666666654

>KOG0531|consensus

Probab=98.79  E-value=3.2e-10  Score=92.36  Aligned_cols=108  Identities=36%  Similarity=0.486  Sum_probs=52.9

Q ss_pred             ccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcC
Q psy10233         38 LEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLS  116 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  116 (207)
                      ++.+++++.+++.+|.|..+.. +..+++|++|++++|.|+.+.++..++.|+.|++.+|.+..+..+..+..|+.++++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS  170 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence            4555555555555555555544 445555555555555555555555555555555555555554444445555555555


Q ss_pred             CCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233        117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus       117 ~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                      +|.+..+.... ...+.+++.+++..|.+.
T Consensus       171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  171 YNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            55544432200 233344444444444333

>KOG1859|consensus

Probab=98.79  E-value=7.2e-11  Score=98.52  Aligned_cols=122  Identities=22%  Similarity=0.312  Sum_probs=85.7

Q ss_pred             EEeecCCCcCc-cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCc--cccCCcEEecCCCccccc
Q psy10233         25 LYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS--HMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        25 l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~L~~L~l~~~~~~~~  101 (207)
                      .++++|.+..+ .++.-+++++.|++++|++.++..+..+++|++||+++|.++.++.++  .+. |+.|.+.+|.++.+
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL  247 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence            45556665544 345556777777777777777777777777777888777777776654  333 77777777777777


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      ..+.++.+|+.||+++|-+.+......+..+..|+.|+|.+|.+--
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            6777777777777777777776665666666777777777776653

>KOG0531|consensus

Probab=98.77  E-value=8.3e-10  Score=89.95  Aligned_cols=143  Identities=32%  Similarity=0.362  Sum_probs=90.1

Q ss_pred             CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      ..+++..|.++.+.. +..+++|+.|++++|.|..+..+..++.|+.|++.+|.+..++++..++.|+.+++++|.+..+
T Consensus        98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen   98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             eeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhh
Confidence            446666666666666 6677777777777777777777666777777777777777777766677777777777777666


Q ss_pred             cC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC--CCcEEEcCCCccc
Q psy10233        102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP--ELRVLTLSHNPCV  171 (207)
Q Consensus       102 ~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~l~l~~n~~~  171 (207)
                      ..  ...+..++.+.+.+|.+..+.   .+..+..+..+++..|.++....   +....  +|+.+++++|++.
T Consensus       178 e~~~~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  178 ENDELSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKLEG---LNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             hhhhhhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceeccC---cccchhHHHHHHhcccCccc
Confidence            44  356667777777777665432   23333344444666666654211   11122  2667777777655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=1.4e-08  Score=59.86  Aligned_cols=58  Identities=36%  Similarity=0.580  Sum_probs=32.6

Q ss_pred             CCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCC
Q psy10233         87 LLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI  145 (207)
Q Consensus        87 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l  145 (207)
                      +|++|++++|.++.++  .+..+++|+.|++++|.++.++. ..+..+++|+.+++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            4555555555555553  24455666666666666655433 4566666666666666643

...

>KOG1909|consensus

Probab=98.75  E-value=8.8e-09  Score=79.39  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             ccCCCCCCEEEeecCCccCc--cC----CccCCCCCEEEeecCcc
Q psy10233         38 LEEYTGLKCLWLENNGISKI--EN----LDAQTEMRSIYMHHNLV   76 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~--~~----~~~l~~L~~L~l~~n~~   76 (207)
                      +.++++|+++++|+|.+..-  +.    +.++..|++|++.+|++
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            34555666666666655531  11    34455566666666554

>KOG1909|consensus

Probab=98.75  E-value=5.3e-09  Score=80.59  Aligned_cols=177  Identities=21%  Similarity=0.228  Sum_probs=117.4

Q ss_pred             CCCeEEeecCCC--cCcc----CccCCCCCCEEEeecCCccCc---------------cCCccCCCCCEEEeecCccccc
Q psy10233         21 LNDVLYLHFKGY--TVIE----NLEEYTGLKCLWLENNGISKI---------------ENLDAQTEMRSIYMHHNLVKVM   79 (207)
Q Consensus        21 ~~~~l~l~~~~~--~~~~----~l~~l~~L~~L~l~~~~l~~~---------------~~~~~l~~L~~L~l~~n~~~~~   79 (207)
                      ..+.++++.|.+  +.++    -+..+..|++|.+.+|.+...               .....-+.|+++...+|.+...
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            567889999977  2333    235678888888988877642               1134557788888888877543


Q ss_pred             c------CCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCC
Q psy10233         80 E------NLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQ  144 (207)
Q Consensus        80 ~------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~  144 (207)
                      +      .++..+.|+.+.++.|.+..-      ..+..+++|+.||+.+|.++.-..   ...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            3      256677888888888877432      246677888888888887754221   2356777788888888887


Q ss_pred             CCChhh---HHHh-ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccC
Q psy10233        145 IEDEEV---IEVF-GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVF  197 (207)
Q Consensus       145 l~~~~~---~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~  197 (207)
                      +.+.+-   .+.+ ...|.|+.+.+.+|.++.+-......-.+..+.|++|+++..+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            776432   2222 3457788888888887654443333334557778777776543

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=8.1e-08  Score=82.08  Aligned_cols=89  Identities=24%  Similarity=0.369  Sum_probs=70.1

Q ss_pred             CcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233         88 LDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL  165 (207)
Q Consensus        88 L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l  165 (207)
                      ++.|+|++|.+.+. | .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++. +|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            56788888877643 3 477788889999999888753 224678888899999999988865 6788888889999999


Q ss_pred             CCCccccchhhHH
Q psy10233        166 SHNPCVGKIKNYR  178 (207)
Q Consensus       166 ~~n~~~~~~~~~~  178 (207)
                      ++|.+.|.+|...
T Consensus       498 s~N~l~g~iP~~l  510 (623)
T PLN03150        498 NGNSLSGRVPAAL  510 (623)
T ss_pred             cCCcccccCChHH
Confidence            9998888888753

>KOG4658|consensus

Probab=98.56  E-value=1.7e-07  Score=82.38  Aligned_cols=164  Identities=18%  Similarity=0.260  Sum_probs=108.7

Q ss_pred             hHHHHHHhhhcCCccCCCCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCc--ccccc
Q psy10233          3 KASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVME   80 (207)
Q Consensus         3 ~~~l~~~c~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~   80 (207)
                      ++-++.+|-|-+....-..-+...-.+.+....+...+....+.+.+-+|.+...+.-...++|++|-+..|.  +...+
T Consensus       484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is  563 (889)
T KOG4658|consen  484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS  563 (889)
T ss_pred             eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence            3456666766655443332322233333444455555666777888888877776655556678888888885  43333


Q ss_pred             C--CccccCCcEEecCCC-ccccccC-CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhcc
Q psy10233         81 N--LSHMQLLDTINLSHN-FIEKIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA  156 (207)
Q Consensus        81 ~--~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  156 (207)
                      .  |..++.|+.||+++| ....+|. ++.+-+|++|+++++.++.+|.  .++.+..|.+|++..+..... ++.....
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~  640 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLES-IPGILLE  640 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch--HHHHHHhhheecccccccccc-ccchhhh
Confidence            3  677888888888877 5566663 7778888888888888876555  777778888888887765443 3556666


Q ss_pred             CCCCcEEEcCCCc
Q psy10233        157 MPELRVLTLSHNP  169 (207)
Q Consensus       157 ~~~L~~l~l~~n~  169 (207)
                      +.+|+.|.+..-.
T Consensus       641 L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  641 LQSLRVLRLPRSA  653 (889)
T ss_pred             cccccEEEeeccc
Confidence            7888888876554

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=2.6e-07  Score=79.03  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             CCEEEeecCcccc--ccCCccccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEcc
Q psy10233         66 MRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS  141 (207)
Q Consensus        66 L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~  141 (207)
                      ++.|++++|.+..  ++.++.+++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+++. .+..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            5666777776642  2346667777777777777753 34 466777777777777777653 22466777777777777


Q ss_pred             CCCCCChhhHHHhccC-CCCcEEEcCCCcccc
Q psy10233        142 HNQIEDEEVIEVFGAM-PELRVLTLSHNPCVG  172 (207)
Q Consensus       142 ~n~l~~~~~~~~~~~~-~~L~~l~l~~n~~~~  172 (207)
                      +|.+++. +|..++.. .++..+++.+|...+
T Consensus       499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGR-VPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCccccc-CChHHhhccccCceEEecCCcccc
Confidence            7777654 45554432 355667777765433

>KOG1644|consensus

Probab=98.44  E-value=3.3e-07  Score=65.91  Aligned_cols=129  Identities=22%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             CCCCCeEEeecCCCcCccCccC-CCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-Cc-cccCCcEEecCC
Q psy10233         19 PSLNDVLYLHFKGYTVIENLEE-YTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LS-HMQLLDTINLSH   95 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~-~~~~L~~L~l~~   95 (207)
                      +...+.+++.+..+..+..++- ..+...+|+++|.+...+.|..++.|++|.+.+|.|+.+.. +. .+++|+.|.+.+
T Consensus        18 ~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   18 SVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             hccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            3444556666666665555554 35678899999999999999999999999999999987744 43 467799999999


Q ss_pred             Ccccccc---CCCCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCC
Q psy10233         96 NFIEKIE---NLSCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus        96 ~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      |++..+.   .+..+++|+.|.+-+|.++.....  -.+..+|+|+.||.++-...+
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence            9887663   466678999999999987664332  235668899999987765444

>KOG4579|consensus

Probab=98.42  E-value=8.3e-09  Score=69.72  Aligned_cols=122  Identities=20%  Similarity=0.253  Sum_probs=73.0

Q ss_pred             CCEEEeecCccccc----cCCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEE
Q psy10233         66 MRSIYMHHNLVKVM----ENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD  139 (207)
Q Consensus        66 L~~L~l~~n~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~  139 (207)
                      +..++++.|.+-.+    -.+.....|..+++++|.+..+|.  ...++.+..+++++|.++++|.  .+-.++.|+.++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhcc
Confidence            44555555544211    123445566667777777776653  2234567777777777777655  367777777788


Q ss_pred             ccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       140 l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      ++.|.+..  .+..+..+.++..|+..+|-+. ++|..  .+....+.|..+...
T Consensus       107 l~~N~l~~--~p~vi~~L~~l~~Lds~~na~~-eid~d--l~~s~~~al~~lgne  156 (177)
T KOG4579|consen  107 LRFNPLNA--EPRVIAPLIKLDMLDSPENARA-EIDVD--LFYSSLPALIKLGNE  156 (177)
T ss_pred             cccCcccc--chHHHHHHHhHHHhcCCCCccc-cCcHH--HhccccHHHHHhcCC
Confidence            88777776  4666656777777777766543 44432  234444455444333

>KOG3665|consensus

Probab=98.37  E-value=3e-07  Score=78.99  Aligned_cols=110  Identities=20%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             cCCCCCEEEeecCccccc--cC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         62 AQTEMRSIYMHHNLVKVM--EN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        62 ~l~~L~~L~l~~n~~~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      .+|+|+.|.+++-.+..-  .. ..+.|+|..||+++++++.+..++.+++|+.|.+.+-.+........+-.+++|+.|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            346666666655544222  11 234556666666666665555555566666665555555443333445555666666


Q ss_pred             EccCCCCCChh-----hHHHhccCCCCcEEEcCCCccc
Q psy10233        139 DVSHNQIEDEE-----VIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       139 ~l~~n~l~~~~-----~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      |+|........     ..+....+|.|+.||.|++.+.
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            66655333311     1222334566666666655444

>KOG2120|consensus

Probab=98.36  E-value=2.8e-08  Score=75.51  Aligned_cols=189  Identities=20%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             HHHhh-hcCCccCCCCCCeEEeecCCCcCccCccCC----------------------------CCCCEEEeecCCccCc
Q psy10233          7 RKICK-DNKLYLTPSLNDVLYLHFKGYTVIENLEEY----------------------------TGLKCLWLENNGISKI   57 (207)
Q Consensus         7 ~~~c~-~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l----------------------------~~L~~L~l~~~~l~~~   57 (207)
                      ...|. |.++..+-.....+++.+-++.. ..++.+                            .-|+.||++...|+..
T Consensus       122 ~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s  200 (419)
T KOG2120|consen  122 SGVCKRFYRLASDESLWQTLDLTGRNIHP-DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS  200 (419)
T ss_pred             HHHHHHHhhccccccceeeeccCCCccCh-hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH
Confidence            34554 67777777888888888777621 111111                            1244555555444432


Q ss_pred             --c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCC-cccccc---CCCCCCCCcEEEcCCCccCCcccccc
Q psy10233         58 --E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHN-FIEKIE---NLSCLPVLRTLHLSHNRLKTIEDIEH  128 (207)
Q Consensus        58 --~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~  128 (207)
                        . -+..+.+|+.+.+.++++.+.  ..+..-..|+.++++.+ +++...   -+.+++.|..|++++|.... +....
T Consensus       201 tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-~~Vtv  279 (419)
T KOG2120|consen  201 TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-EKVTV  279 (419)
T ss_pred             HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-hhhhH
Confidence              1 134455566666666655433  12444555666666665 444321   24455667777777775433 11111


Q ss_pred             -CCC-CCCccEEEccCCC--CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233        129 -LKD-CPLLSIVDVSHNQ--IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD  200 (207)
Q Consensus       129 -l~~-~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~  200 (207)
                       ..+ .++|..|++++..  +....+......+|++.+||+++|.....   .-...+.+++.|++|+++-|....
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHHHHHHhcchheeeehhhhcCCC
Confidence             111 2356666666541  22222345567788888888888864432   222246778888888877665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=6e-07  Score=49.02  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=19.6

Q ss_pred             CCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc
Q psy10233         43 GLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME   80 (207)
Q Consensus        43 ~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~   80 (207)
                      +|++|++++|.+..++. +..+++|++|++++|.++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            45555555555555544 555555555555555554443

...

>KOG2739|consensus

Probab=98.33  E-value=3.9e-07  Score=67.86  Aligned_cols=112  Identities=23%  Similarity=0.371  Sum_probs=67.3

Q ss_pred             CcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccc-cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcC
Q psy10233         88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIE-HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS  166 (207)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~  166 (207)
                      |+.+.+.+..++.+..+..+++|++|.++.|.......+. ....+|+|++++++.|.+....-...+..+.+|..|+++
T Consensus        45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~  124 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF  124 (260)
T ss_pred             hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence            3333344444444444555556666666666322211211 233347777777777776653333344566678888888


Q ss_pred             CCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233        167 HNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD  200 (207)
Q Consensus       167 ~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~  200 (207)
                      +|..+. +.+++..++.-+++|++||...+...+
T Consensus       125 n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen  125 NCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEE  157 (260)
T ss_pred             cCCccc-cccHHHHHHHHhhhhccccccccCCcc
Confidence            888663 777777788888999888887665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=9.3e-07  Score=48.25  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=16.3

Q ss_pred             CCCEEEeecCccccccC-CccccCCcEEecCCCcccc
Q psy10233         65 EMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        65 ~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~  100 (207)
                      +|++|++++|.++.++. ++.+++|+.|++++|.++.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            34455555555444444 4444444444444444443

...

>KOG2120|consensus

Probab=98.27  E-value=2.2e-08  Score=76.00  Aligned_cols=170  Identities=23%  Similarity=0.216  Sum_probs=105.3

Q ss_pred             CCeEEeecCCCcCc---cCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecC-ccccccC---CccccCCcEEe
Q psy10233         22 NDVLYLHFKGYTVI---ENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHN-LVKVMEN---LSHMQLLDTIN   92 (207)
Q Consensus        22 ~~~l~l~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n-~~~~~~~---~~~~~~L~~L~   92 (207)
                      ++.++++...++.-   .-++.+.+|+.+.+.++.+..-  ..+..-.+|+.++++.+ +++....   +++|+.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            44566666666421   2346678888888888887763  34677788999999886 4443321   56788888888


Q ss_pred             cCCCccccc--c-CCCCC-CCCcEEEcCCCc--cCCccccc-cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233         93 LSHNFIEKI--E-NLSCL-PVLRTLHLSHNR--LKTIEDIE-HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL  165 (207)
Q Consensus        93 l~~~~~~~~--~-~~~~~-~~L~~L~l~~n~--i~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l  165 (207)
                      ++.|....-  . .+... ++|..|+++++.  +.. .... ..+.++.|.+||++.+.....+....+.+++-|+++.+
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888865321  1 11122 567778888763  111 1111 24567888888888874433345555667788888888


Q ss_pred             CCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        166 SHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       166 ~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +.|..   +++....-+.+.|.|.+||.-.
T Consensus       346 sRCY~---i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  346 SRCYD---IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhhcC---CChHHeeeeccCcceEEEEecc
Confidence            88872   2222222356667777776544

>KOG4579|consensus

Probab=98.21  E-value=1.4e-07  Score=63.91  Aligned_cols=100  Identities=30%  Similarity=0.332  Sum_probs=77.6

Q ss_pred             CCcEEecCCCcccccc----CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcE
Q psy10233         87 LLDTINLSHNFIEKIE----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV  162 (207)
Q Consensus        87 ~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  162 (207)
                      .+..++|+.+.+-.++    .+.....|...++++|.+..++. .+-..++.+++++++.|.+.+  .|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISD--VPEELAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhh--chHHHhhhHHhhh
Confidence            4567888888776442    35566788899999999999876 566667899999999999998  5666899999999


Q ss_pred             EEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       163 l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      ++++.|++. ..|+-    +..+.+|-.||..
T Consensus       105 lNl~~N~l~-~~p~v----i~~L~~l~~Lds~  131 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRV----IAPLIKLDMLDSP  131 (177)
T ss_pred             cccccCccc-cchHH----HHHHHhHHHhcCC
Confidence            999999987 45543    4446666666654

>KOG3665|consensus

Probab=98.10  E-value=2e-06  Score=74.03  Aligned_cols=129  Identities=18%  Similarity=0.256  Sum_probs=97.1

Q ss_pred             cCcc-CCCCCCEEEeecCCccCc--c-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc---cCCCCCC
Q psy10233         36 ENLE-EYTGLKCLWLENNGISKI--E-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI---ENLSCLP  108 (207)
Q Consensus        36 ~~l~-~l~~L~~L~l~~~~l~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~  108 (207)
                      ..++ .+|.|++|.+.+-.+..-  . -..++|+|..||+++++++.+.+++.+++|+.|.+.+-.+...   -.+..++
T Consensus       141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~  220 (699)
T KOG3665|consen  141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLK  220 (699)
T ss_pred             HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence            3444 479999999988765442  1 2568899999999999999998999999999998877666543   4688999


Q ss_pred             CCcEEEcCCCccCCccc-----cccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEE
Q psy10233        109 VLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT  164 (207)
Q Consensus       109 ~L~~L~l~~n~i~~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~  164 (207)
                      +|+.||+|.......+.     .+.-..+|.|+.||.+++.+...-....+..-|+|+.+.
T Consensus       221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            99999999986544331     123455899999999999888765555555556666544

>KOG2123|consensus

Probab=97.98  E-value=1.2e-07  Score=71.55  Aligned_cols=79  Identities=25%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             CCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc---CCCCCCCCcEEEcCC
Q psy10233         41 YTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE---NLSCLPVLRTLHLSH  117 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~  117 (207)
                      +.+.+.|+++++.+..+.-...|+.|+.|.++-|.|+.+..+..|+.|++|.|..|.+..+.   -+.++++|+.|.+..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            34455566666665555444556666666666666666666666666666666666655542   244455555555555


Q ss_pred             Cc
Q psy10233        118 NR  119 (207)
Q Consensus       118 n~  119 (207)
                      |.
T Consensus        98 NP   99 (388)
T KOG2123|consen   98 NP   99 (388)
T ss_pred             CC
Confidence            54

>KOG2739|consensus

Probab=97.93  E-value=5.5e-06  Score=61.88  Aligned_cols=105  Identities=22%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             CCCCCEEEeecCccccccCCccccCCcEEecCCCccccc---c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         63 QTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI---E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        63 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      +..|+.+.+.+.+++...++..+++|++|.++.|.+...   . -.-..++|+++++++|+|..+.....+..+.+|.+|
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            344555566666666666666777777777777744332   1 122337788888888877765555566667777777


Q ss_pred             EccCCCCCChh--hHHHhccCCCCcEEEcCC
Q psy10233        139 DVSHNQIEDEE--VIEVFGAMPELRVLTLSH  167 (207)
Q Consensus       139 ~l~~n~l~~~~--~~~~~~~~~~L~~l~l~~  167 (207)
                      ++..|..+...  -...+.-+++|+.++-..
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccc
Confidence            77777555422  134556667777666443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.93  E-value=2e-05  Score=59.54  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=93.6

Q ss_pred             cCccCCCCCCEEEeecCCccCc-cC-----CccCCCCCEEEeecCcccccc---------------CCccccCCcEEecC
Q psy10233         36 ENLEEYTGLKCLWLENNGISKI-EN-----LDAQTEMRSIYMHHNLVKVME---------------NLSHMQLLDTINLS   94 (207)
Q Consensus        36 ~~l~~l~~L~~L~l~~~~l~~~-~~-----~~~l~~L~~L~l~~n~~~~~~---------------~~~~~~~L~~L~l~   94 (207)
                      +.+.+|+.|+.+++++|.+..- +.     +.....|.+|.+++|++--+.               ...+-|.|+.++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            4567889999999999988753 22     566788999999999773221               12345678888888


Q ss_pred             CCcccccc------CCCCCCCCcEEEcCCCccCCccc--c--ccCCCCCCccEEEccCCCCCChh---hHHHhccCCCCc
Q psy10233         95 HNFIEKIE------NLSCLPVLRTLHLSHNRLKTIED--I--EHLKDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELR  161 (207)
Q Consensus        95 ~~~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~--~--~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~  161 (207)
                      .|++...+      .+.....|+.+.+..|.|..-+.  .  -.+.++.+|+.||++.|-++-..   +.+.+..++.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            88876543      24444678888888888754221  1  12455678888888888776422   345566777788


Q ss_pred             EEEcCCCcccc
Q psy10233        162 VLTLSHNPCVG  172 (207)
Q Consensus       162 ~l~l~~n~~~~  172 (207)
                      .|.+.+|-+..
T Consensus       246 EL~lnDClls~  256 (388)
T COG5238         246 ELRLNDCLLSN  256 (388)
T ss_pred             hccccchhhcc
Confidence            88888887654

>KOG4658|consensus

Probab=97.76  E-value=3.4e-05  Score=68.35  Aligned_cols=135  Identities=23%  Similarity=0.288  Sum_probs=100.6

Q ss_pred             ccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCc--cccccC--CCCCCCCcEEEcCCCc-cCCcccccc
Q psy10233         54 ISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF--IEKIEN--LSCLPVLRTLHLSHNR-LKTIEDIEH  128 (207)
Q Consensus        54 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~n~-i~~~~~~~~  128 (207)
                      ....|........+...+-+|.+.....-..++.|++|-+.+|.  +..++.  +..++.|+.||+++|. +..+|  ..
T Consensus       513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~  590 (889)
T KOG4658|consen  513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SS  590 (889)
T ss_pred             ccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hH
Confidence            33345555666778888888877666555566678888888885  444443  7778999999999874 44433  47


Q ss_pred             CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ++.+-+|+.|++++..+..  +|..++.++.|.+|++..+.....++.    ....+.+|++|.+...
T Consensus       591 I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRS  652 (889)
T ss_pred             HhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccc----hhhhcccccEEEeecc
Confidence            8888899999999999986  788889999999999998886655544    3556888888877654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.72  E-value=3.8e-05  Score=58.14  Aligned_cols=159  Identities=19%  Similarity=0.177  Sum_probs=74.4

Q ss_pred             CccCCCCCCEEEeecCCccCc------cCCccCCCCCEEEeecCccc------------cccCCccccCCcEEecCCCcc
Q psy10233         37 NLEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVK------------VMENLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        37 ~l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~~L~~L~l~~~~~   98 (207)
                      .+..+..+..+++++|.|..-      ..+..-.+|+..+++.-...            ..+.+-.||.|+.+++|+|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344566677777777766542      11344455555555432110            112344666666677766666


Q ss_pred             ccc-c-----CCCCCCCCcEEEcCCCccCCccccc------------cCCCCCCccEEEccCCCCCChhhH---HHhccC
Q psy10233         99 EKI-E-----NLSCLPVLRTLHLSHNRLKTIEDIE------------HLKDCPLLSIVDVSHNQIEDEEVI---EVFGAM  157 (207)
Q Consensus        99 ~~~-~-----~~~~~~~L~~L~l~~n~i~~~~~~~------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~  157 (207)
                      +.- |     -++....|.+|.+++|.+..+....            ....-|.|+.+.+.+|++...+..   ..+..-
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            432 1     1344456666666666554322100            011234566666666665543211   111222


Q ss_pred             CCCcEEEcCCCccccch-hhHHHHHHHhCCcceeccCcc
Q psy10233        158 PELRVLTLSHNPCVGKI-KNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       158 ~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ..|+.+.+.+|.+...- ....-.-+..|.+|+.||++.
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD  223 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD  223 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence            34555555555544210 111111234555555555554

>KOG2982|consensus

Probab=97.26  E-value=9.4e-05  Score=56.74  Aligned_cols=80  Identities=28%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             CCCCEEEeecCccccccC----CccccCCcEEecCCCccccc-cCC-CCCCCCcEEEcCCCccCCccccccCCCCCCccE
Q psy10233         64 TEMRSIYMHHNLVKVMEN----LSHMQLLDTINLSHNFIEKI-ENL-SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSI  137 (207)
Q Consensus        64 ~~L~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~  137 (207)
                      ..++.+++.+|.+...+.    +..+|.|+.|+++.|.+... ..+ ....+|+.+-+.+..+........+..+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            445555555555543322    23455555555555554321 122 133455555555554433222234444555555


Q ss_pred             EEccCC
Q psy10233        138 VDVSHN  143 (207)
Q Consensus       138 L~l~~n  143 (207)
                      |+++.|
T Consensus       151 lHmS~N  156 (418)
T KOG2982|consen  151 LHMSDN  156 (418)
T ss_pred             hhhccc
Confidence            555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.99  E-value=0.0065  Score=40.91  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=18.1

Q ss_pred             cCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233         39 EEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS   94 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~   94 (207)
                      .++.+|+.+.+.. .+..++  .|..+++|+.+.+..+ +..++  .+..+++++.+.+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3444555555442 233332  2444444555555443 32221  23444444555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.91  E-value=0.004  Score=50.49  Aligned_cols=31  Identities=16%  Similarity=0.082  Sum_probs=16.5

Q ss_pred             CccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233        134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN  168 (207)
Q Consensus       134 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n  168 (207)
                      +|+.|++++|....  .|..+  ..+|+.|+++.+
T Consensus       157 SLk~L~Is~c~~i~--LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNII--LPEKL--PESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCccc--Ccccc--cccCcEEEeccc
Confidence            66777776665443  22221  146666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.64  E-value=0.01  Score=39.93  Aligned_cols=118  Identities=23%  Similarity=0.397  Sum_probs=59.9

Q ss_pred             CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233         60 LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL  135 (207)
Q Consensus        60 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L  135 (207)
                      |..+.+|+.+.+.. .++.++  .|..+++++.+.+..+ +..++  .+...+.++.+.+.+ .+..++. ..+..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccccc
Confidence            56677888888875 454443  3778888999998875 55553  466666889998866 4444444 567788899


Q ss_pred             cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233        136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR  189 (207)
Q Consensus       136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~  189 (207)
                      +.+.+..+ +... ....+..+ .++.+.+..+- . .++..   .+.+|++|+
T Consensus        84 ~~i~~~~~-~~~i-~~~~f~~~-~l~~i~~~~~~-~-~i~~~---~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEI-GSSSFSNC-NLKEINIPSNI-T-KIEEN---AFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEE-HTTTTTT--T--EEE-TTB--S-S-------GGG------
T ss_pred             cccccCcc-ccEE-chhhhcCC-CceEEEECCCc-c-EECCc---cccccccCC
Confidence            99998775 5443 24556666 88888877532 2 33332   356666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.43  E-value=0.009  Score=48.51  Aligned_cols=118  Identities=16%  Similarity=0.272  Sum_probs=74.8

Q ss_pred             ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecC-ccccccCCccccCCcEEecCCC-ccccccCCCCCCCCcEEEc
Q psy10233         38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHL  115 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l  115 (207)
                      +..+.+++.|++++|.+..+|.+.  ++|+.|.++++ .++.++.. -.++|+.|.+++| .+..+|     .+|+.|++
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L  119 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP-----ESVRSLEI  119 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc-----cccceEEe
Confidence            345688999999999888887432  36999999875 44444431 1357999999987 554433     46788888


Q ss_pred             CCCccCCccccccCCCC-CCccEEEccCCCCC-ChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        116 SHNRLKTIEDIEHLKDC-PLLSIVDVSHNQIE-DEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~-~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ..+....      +..+ ++|+.|.+..+... ....+..  -.++|+.|++++|...
T Consensus       120 ~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        120 KGSATDS------IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI  169 (426)
T ss_pred             CCCCCcc------cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence            7665433      2223 26778877543211 1111211  2368999999988754

>KOG1947|consensus

Probab=96.22  E-value=0.0049  Score=51.05  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             cCCCCCEEEeecC-cccc--c-cCCccccCCcEEecCCC--ccccc-----cCCCCCCCCcEEEcCCCc-cCCccccccC
Q psy10233         62 AQTEMRSIYMHHN-LVKV--M-ENLSHMQLLDTINLSHN--FIEKI-----ENLSCLPVLRTLHLSHNR-LKTIEDIEHL  129 (207)
Q Consensus        62 ~l~~L~~L~l~~n-~~~~--~-~~~~~~~~L~~L~l~~~--~~~~~-----~~~~~~~~L~~L~l~~n~-i~~~~~~~~l  129 (207)
                      ..+.|+.+.+..+ .+..  . +....++.|+.|+++++  .....     ......++|+.++++.+. +++.......
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3566777777665 2222  2 22456778888888763  11111     123334788888888887 6554432233


Q ss_pred             CCCCCccEEEccCCC-CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        130 KDCPLLSIVDVSHNQ-IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       130 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      ..+++|+.|.+..+. +++.++......+++|+.|+++.+....  ..........|++++.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--DSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--HHHHHHHHHhCcchhhhhhh
Confidence            447888888888777 7877777788888889999999887542  22233345668777665543

>KOG1947|consensus

Probab=95.80  E-value=0.0069  Score=50.17  Aligned_cols=114  Identities=23%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             cccCCcEEecCCC-cccc--c-cCCCCCCCCcEEEcCCC--ccCCcc--ccccCCCCCCccEEEccCCC-CCChhhHHHh
Q psy10233         84 HMQLLDTINLSHN-FIEK--I-ENLSCLPVLRTLHLSHN--RLKTIE--DIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVF  154 (207)
Q Consensus        84 ~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~n--~i~~~~--~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~  154 (207)
                      .++.|+.+.+.++ .+..  + +.....++|+.++++++  .+...+  .......+++|+.++++++. +++..+....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4677888888776 4433  2 44556789999999873  222211  12345556889999999998 8877666666


Q ss_pred             ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHH
Q psy10233        155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDK  199 (207)
Q Consensus       155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~  199 (207)
                      ..+++|+.|.+..+.-  ..+.....+..+|+.|++|+++.+...
T Consensus       266 ~~c~~L~~L~l~~c~~--lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSN--LTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCc--cchhHHHHHHHhcCcccEEeeecCccc
Confidence            6699999999877762  124555667899999999999977654

>KOG4341|consensus

Probab=95.47  E-value=0.016  Score=46.78  Aligned_cols=119  Identities=22%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             cccCCcEEecCCC-ccccc--cC-CCCCCCCcEEEcCCCccCCcc-ccccCCCCCCccEEEccCCCCCChh-hH---HHh
Q psy10233         84 HMQLLDTINLSHN-FIEKI--EN-LSCLPVLRTLHLSHNRLKTIE-DIEHLKDCPLLSIVDVSHNQIEDEE-VI---EVF  154 (207)
Q Consensus        84 ~~~~L~~L~l~~~-~~~~~--~~-~~~~~~L~~L~l~~n~i~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~-~~---~~~  154 (207)
                      ++.+|+.+.+..+ .++..  .. -.+.+.|+.+++-++...... ....-.+++.|+.+.++.+.....+ +.   ..-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            4455666666655 23322  11 223456777776666432211 2334466778888888876443321 11   111


Q ss_pred             ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhh
Q psy10233        155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAE  205 (207)
Q Consensus       155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~  205 (207)
                      ..+..+..+.+++++.   +++.....+..|++|+.+++.++....+++.+
T Consensus       398 c~~~~l~~lEL~n~p~---i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPL---ITDATLEHLSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             ccccccceeeecCCCC---chHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence            3445677788888874   35555567788888888887776666555443

>KOG3763|consensus

Probab=95.20  E-value=0.025  Score=47.10  Aligned_cols=92  Identities=28%  Similarity=0.422  Sum_probs=64.8

Q ss_pred             CCCCCcEEEcCCCccCCcccccc-CCCCCCccEEEccCC--CCCChhhHHHhccCCCCcEEEcCCCccccchhh---HHH
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDIEH-LKDCPLLSIVDVSHN--QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN---YRR  179 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~~~-l~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~  179 (207)
                      +.+.+..+++++|++..+..... -...|.|..|+|++|  .+....-..-++.+ .|+.|-+.+|++++....   +..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence            34678889999998877655433 345689999999999  55543323344444 589999999998875442   233


Q ss_pred             HHHHhCCcceeccCcccCH
Q psy10233        180 MFINLCVNLRHLDDYPVFD  198 (207)
Q Consensus       180 ~~~~~~~~L~~L~~~~~~~  198 (207)
                      .+....|+|..||...+..
T Consensus       295 ~i~~~FPKL~~LDG~ev~~  313 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQP  313 (585)
T ss_pred             HHHHhcchheeecCcccCc
Confidence            4556889999999876654

>KOG3864|consensus

Probab=95.07  E-value=0.012  Score=42.81  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=16.1

Q ss_pred             CCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233        133 PLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus       133 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      ++|+.|+++.| +|++. -...+..+++|+.|.+.+-+
T Consensus       151 ~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCch
Confidence            34555555543 33333 23333444555555444443

>KOG4308|consensus

Probab=94.90  E-value=0.00069  Score=56.26  Aligned_cols=159  Identities=23%  Similarity=0.217  Sum_probs=96.9

Q ss_pred             CccCCCCCCEEEeecCCccCc------cCCccC-CCCCEEEeecCcccccc------CCccccCCcEEecCCCccccc--
Q psy10233         37 NLEEYTGLKCLWLENNGISKI------ENLDAQ-TEMRSIYMHHNLVKVME------NLSHMQLLDTINLSHNFIEKI--  101 (207)
Q Consensus        37 ~l~~l~~L~~L~l~~~~l~~~------~~~~~l-~~L~~L~l~~n~~~~~~------~~~~~~~L~~L~l~~~~~~~~--  101 (207)
                      .+.....|+.|++++|.+...      ..+... +.++++++..|.++...      .+.....++.++++.|.+...  
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            445667777788888877642      112222 45666777777664332      244566777788887766322  


Q ss_pred             ----cCCC----CCCCCcEEEcCCCccCCccc---cccCCCCCC-ccEEEccCCCCCChhhHH---HhccC-CCCcEEEc
Q psy10233        102 ----ENLS----CLPVLRTLHLSHNRLKTIED---IEHLKDCPL-LSIVDVSHNQIEDEEVIE---VFGAM-PELRVLTL  165 (207)
Q Consensus       102 ----~~~~----~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~-L~~L~l~~n~l~~~~~~~---~~~~~-~~L~~l~l  165 (207)
                          +.+.    ...+++.|++.+|.++...-   ...+...++ +..+++..|.+.+.....   .+..+ +.++.+++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence                1222    35678888888887764211   123445554 566888888777643222   33333 45678888


Q ss_pred             CCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        166 SHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       166 ~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +.|.+++.-.......+..|+.++.+.+..
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~  299 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSN  299 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence            888887766666666777777777776653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.10  E-value=0.043  Score=23.12  Aligned_cols=13  Identities=38%  Similarity=0.527  Sum_probs=4.7

Q ss_pred             CCCEEEeecCCcc
Q psy10233         43 GLKCLWLENNGIS   55 (207)
Q Consensus        43 ~L~~L~l~~~~l~   55 (207)
                      +|+.|++++|.+.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444555554443

...

>KOG4341|consensus

Probab=92.95  E-value=0.041  Score=44.48  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=34.8

Q ss_pred             CCCCCCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH-HHHHhCCcceeccCcccCHH
Q psy10233        129 LKDCPLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR-MFINLCVNLRHLDDYPVFDK  199 (207)
Q Consensus       129 l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~~L~~L~~~~~~~~  199 (207)
                      ...++++++|.+.++ .+++......-..++.|+++++..|...   .+... .+...|++|++++++.++..
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i---T~~~Lk~la~gC~kL~~lNlSwc~qi  229 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI---TDVSLKYLAEGCRKLKYLNLSWCPQI  229 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh---HHHHHHHHHHhhhhHHHhhhccCchh
Confidence            344556666655554 3444444445555666666666654322   11111 14556666666666655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.58  E-value=0.08  Score=23.85  Aligned_cols=11  Identities=45%  Similarity=0.483  Sum_probs=4.5

Q ss_pred             cEEEcCCCccC
Q psy10233        111 RTLHLSHNRLK  121 (207)
Q Consensus       111 ~~L~l~~n~i~  121 (207)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864|consensus

Probab=92.51  E-value=0.094  Score=38.35  Aligned_cols=84  Identities=21%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             CCCcEEEcCCCccCCccccccCCCCCCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCC
Q psy10233        108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV  186 (207)
Q Consensus       108 ~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  186 (207)
                      ..++.++-++..|...+- ..+..++.++.+.+.++ .+.++.+...-+..++|+.|++++|+..   .+.=..-+.+++
T Consensus       101 ~~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI---T~~GL~~L~~lk  176 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI---TDGGLACLLKLK  176 (221)
T ss_pred             ceEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee---chhHHHHHHHhh
Confidence            345667777766655332 45666667777777666 3334432223334467888888877633   222222355666


Q ss_pred             cceeccCcc
Q psy10233        187 NLRHLDDYP  195 (207)
Q Consensus       187 ~L~~L~~~~  195 (207)
                      +|+.|.++.
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            666665543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.74  E-value=0.32  Score=22.20  Aligned_cols=15  Identities=40%  Similarity=0.598  Sum_probs=7.0

Q ss_pred             CCCcEEEcCCCcccc
Q psy10233        158 PELRVLTLSHNPCVG  172 (207)
Q Consensus       158 ~~L~~l~l~~n~~~~  172 (207)
                      ++|+.|++++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455556666555543

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.68  E-value=0.34  Score=22.58  Aligned_cols=16  Identities=38%  Similarity=0.453  Sum_probs=8.4

Q ss_pred             CCCCEEEeecCCccCc
Q psy10233         42 TGLKCLWLENNGISKI   57 (207)
Q Consensus        42 ~~L~~L~l~~~~l~~~   57 (207)
                      ++|+.|++++|.+..+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.68  E-value=0.34  Score=22.58  Aligned_cols=16  Identities=38%  Similarity=0.453  Sum_probs=8.4

Q ss_pred             CCCCEEEeecCCccCc
Q psy10233         42 TGLKCLWLENNGISKI   57 (207)
Q Consensus        42 ~~L~~L~l~~~~l~~~   57 (207)
                      ++|+.|++++|.+..+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.90  E-value=0.4  Score=22.65  Aligned_cols=16  Identities=50%  Similarity=0.476  Sum_probs=8.3

Q ss_pred             CCCCEEEeecCCccCc
Q psy10233         42 TGLKCLWLENNGISKI   57 (207)
Q Consensus        42 ~~L~~L~l~~~~l~~~   57 (207)
                      ++|+.|+++.|.|..+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555443

>KOG3763|consensus

Probab=86.53  E-value=0.52  Score=39.62  Aligned_cols=63  Identities=24%  Similarity=0.369  Sum_probs=35.7

Q ss_pred             cccCCcEEecCCCccccccC----CCCCCCCcEEEcCCC--ccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233         84 HMQLLDTINLSHNFIEKIEN----LSCLPVLRTLHLSHN--RLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus        84 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n--~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      +.+.+..+.+++|++..+..    .+..|+|..|+|++|  .+........++. ..|++|.+.+|.+..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence            44556667777777665522    223367777777777  4433222222333 246777777777664

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.42  E-value=1.1  Score=21.41  Aligned_cols=12  Identities=33%  Similarity=0.559  Sum_probs=5.4

Q ss_pred             ccEEEccCCCCC
Q psy10233        135 LSIVDVSHNQIE  146 (207)
Q Consensus       135 L~~L~l~~n~l~  146 (207)
                      |+.|+|++|.+.
T Consensus         4 L~~LdL~~N~i~   15 (28)
T smart00368        4 LRELDLSNNKLG   15 (28)
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		4e-08
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		5e-08
2wqw_A	286	Double-Disulfide Cross-Linked Crystal Dimer Of The		1e-05
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		2e-05
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		3e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-05
2wqx_A	289	Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutan		3e-05
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		4e-05
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		5e-05
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		5e-05
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		6e-05
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-05
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-05
1dce_A	567	Crystal Structure Of Rab Geranylgeranyltransferase		6e-05
1ltx_A	567	Structure Of Rab Escort Protein-1 In Complex With R		6e-05
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		7e-04
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		9e-04

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 54  ISKIENLDAQTEM----RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP- 108
           I  IE +DA        + + +  N ++ + +LS M+ L  ++L  N I+KIENL  +  
Sbjct: 34  IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
            L  L +S+N++ ++  IE L +   L ++ +S+N+I +   I+   A+ +L  L L+ N
Sbjct: 94  TLEELWISYNQIASLSGIEKLVN---LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Query: 169 PCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA 204
           P     K       YR   +    NL+ LD  PV   +R+ A
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 54  ISKIENLDAQTEM----RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP- 108
           I  IE +DA        + + +  N ++ + +LS M+ L  ++L  N I+KIENL  +  
Sbjct: 35  IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 94
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
            L  L +S+N++ ++  IE L +   L ++ +S+N+I +   I+   A+ +L  L L+ N
Sbjct: 95  TLEELWISYNQIASLSGIEKLVN---LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
Query: 169 PCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA 204
           P     K       YR   +    NL+ LD  PV   +R+ A
Sbjct: 152 PLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 193

>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The Listeria Monocytogenes Inlb Internalin Domain Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+CL  
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTK 174
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 175 LQNLYLSKNHISDLRALCGLKNLDVLEL 202

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDVLEL 204

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 23  DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT--EMRSIYMHHNLVKV-- 78
           D+   H  G  +   +E    LK L L  N   ++  ++A +   +R +Y+  N+ K+  
Sbjct: 283 DLTAAHLNG--LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDL 340
Query: 79  ----MENLSHMQLLDTINLSHNFIEKIE----NLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
               +E L ++Q LD   LSH+ IE  +     L  L  L+ L+LS+N    +ED +  K
Sbjct: 341 GTRCLEKLENLQKLD---LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED-QAFK 396
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
           +CP L ++DV+   +  +     F  +  LRVL LSH
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433

>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of The Listeria Monocytogenes Inlb Internalin Domain Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I +I  L+ L  
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTK 177
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 178 LQNLYLSKNHISDLRALRGLKNLDVLEL 205

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 177
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 178 LQNLYLSKNHISDLRALAGLKNLDVLEL 205

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 140 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 199
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 200 LQNLYLSKNHISDLRALAGLKNLDVLEL 227

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 40  EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFI 98
           EY  ++ L L +  ++ + +L+    +  + + HN ++ +   L+ ++ L+ +  S N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 99  EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           E ++ ++ LP L+ L L +NRL+    I+ L  CP L ++++  N +  EE I+
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 40  EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFI 98
           EY  ++ L L +  ++ + +L+    +  + + HN ++ +   L+ ++ L+ +  S N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 99  EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           E ++ ++ LP L+ L L +NRL+    I+ L  CP L ++++  N +  EE I+
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           E+NGIS I  L    ++ S+Y+ +N +  +  LS +  LDT++L  N I  I  L+ L  
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 174
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           L+ L+LS N +  +  +  LK+  +L +
Sbjct: 175 LQNLYLSKNHISDLRALAGLKNLDVLEL 202

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 303
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLF 332

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 254 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 307
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 308 KNLTYLTLYFNNISDISPVSSLTKLQRLF 336

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 303
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLF 332

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 308
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLF 337

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N 
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           I  +  LS L  L  L L  N+   I +I  L     L+ ++++ NQ+ED   I     +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
             L  LTL  N       V  +   +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 53  GISKIENLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFIEKIEN--LSCLP 108
           GI K    D    +  +++ HN ++   +E+L     L  + L HN I  IEN  LS LP
Sbjct: 186 GIPK----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
            LR LHL +N+L  +     L D  LL +V +  N I
Sbjct: 242 TLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNI 276

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 30  KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLD 89
           K  T I NL   T L  L L  N I  I  L + T +     + N +  +  +++   L+
Sbjct: 168 KDVTPIANL---TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 90  TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           ++ + +N I  +  L+ L  L  L +  N+   I DI  +KD   L  ++V  NQI D  
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQ---ISDINAVKDLTKLKXLNVGSNQISD-- 279
Query: 150 VIEVFGAMPELRVLTLSHNP-------CVGKIKNYRRMFI 182
            I V   + +L  L L++N         +G + N   +F+
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-30
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-30
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  144 bits (366), Expect = 5e-44
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 1   MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIEN 59
             K ++R   +   +  T +    L+        ++  L      K L L  N I KI +
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65

Query: 60  LDAQTEMRSIYMHHNLVKVMENLSHM-QLLDTINLSHNFIEKIENLSCLPVLRTLHLSHN 118
           L     +R + +  NL+K +ENL  +   L+ + +S+N I  +  +  L  LR L++S+N
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
           ++    +I+ L     L  + ++ N + ++                            YR
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-------------------ATSEYR 166

Query: 179 RMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
              +    NL+ LD  PV   +R+ A   
Sbjct: 167 IEVVKRLPNLKKLDGMPVDVDEREQANVA 195

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  137 bits (346), Expect = 2e-41
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 49  LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH-MQLLDTINLSHNFIEKIENLSCL 107
           L    I +          R + +    + V+ENL   +   D I+ S N I K++    L
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
             L+TL +++NR+  I +    +  P L+ + +++N + +   ++   ++  L  L +  
Sbjct: 64  RRLKTLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 168 NPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
           NP     K+YR   I     +R LD   V  K+R+ AE  
Sbjct: 123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 161

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 92  NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
            L+   IE+    +     R L L   ++  IE++           +D S N+I     +
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK---L 57

Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           + F  +  L+ L +++N    +I            +L  L 
Sbjct: 58  DGFPLLRRLKTLLVNNN----RICRIGEGLDQALPDLTELI 94

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score =  110 bits (277), Expect = 4e-31
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 72  HHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKD 131
             N  K+    +    L+ ++L +  +  + NL  LP L+ L LS NR+    D+   K 
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEK- 93

Query: 132 CPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191
            P L+ +++S N+++D   +E    +  L+ L L +      + +YR     L   L +L
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152

Query: 192 DDYPVFDKDRKCAEA 206
           D Y   D++   ++A
Sbjct: 153 DGYDREDQEAPDSDA 167

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           +R L L + +    +      +   L  + + +  +     +     +P+L+ L LS N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSEN- 81

Query: 170 CVGKIKNYRRMFINLCVNLRHLD 192
              +I     M      NL HL+
Sbjct: 82  ---RIFGGLDMLAEKLPNLTHLN 101

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  116 bits (292), Expect = 1e-30
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L+L+    T I+ L     L  L+L+ N I  + +L    +++S+ + HN +  +  L 
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 128

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           H+  L+++ L +N I  I  LS L  L TL L  N+   I DI  L     L  + +S N
Sbjct: 129 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKN 185

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
            I D   +     +  L VL L    C+ K  N++   +  
Sbjct: 186 HISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (284), Expect = 2e-29
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 12/168 (7%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           +  +      ++ ++    +  L+L  N ++ I+ L     +  +++  N +K + +L  
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           ++ L +++L HN I  I  L  LP L +L+L +N++  I  +  L     L  + +  NQ
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK---LDTLSLEDNQ 164

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           I D   I     + +L+ L LS N     I + R   +    NL  L+
Sbjct: 165 ISD---IVPLAGLTKLQNLYLSKN----HISDLR--ALAGLKNLDVLE 203

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (275), Expect = 2e-28
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
             L  K  T      E   +  +   N+ I  ++ +     +  ++++ N +  ++ L++
Sbjct: 26  DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN 85

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           ++ L  + L  N I+ + +L  L  L++L L HN    I DI  L   P L  + + +N+
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG---ISDINGLVHLPQLESLYLGNNK 142

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           I D   I V   + +L  L+L  N    +I +     +     L++L 
Sbjct: 143 ITD---ITVLSRLTKLDTLSLEDN----QISDIV--PLAGLTKLQNLY 181

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  102 bits (254), Expect = 2e-25
 Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
           I   + +       L+   ++     +    +  I  +++ +K ++ + ++  +  + L+
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 73

Query: 95  HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
            N +  I+ L+ L  L  L L  N+   I+D+  LKD   L  + + HN I D   I   
Sbjct: 74  GNKLTDIKPLTNLKNLGWLFLDENK---IKDLSSLKDLKKLKSLSLEHNGISD---INGL 127

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +P+L  L L +N    KI +     ++    L  L 
Sbjct: 128 VHLPQLESLYLGNN----KITDIT--VLSRLTKLDTLS 159

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 3e-22
 Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 44  LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN 103
           +      +  I +I   DA  E     +    V      + +  +D I  +++ I+ ++ 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
           +  LP +  L L+ N+L  I+ + +LK+   L  + +  N+I+D   +     + +L+ L
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKN---LGWLFLDENKIKD---LSSLKDLKKLKSL 114

Query: 164 TLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +L HN  +  I       +     L  L 
Sbjct: 115 SLEHNG-ISDING-----LVHLPQLESLY 137

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  111 bits (279), Expect = 5e-30
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L+L+    T I+ L     L  L+L+ N +  + +L    +++S+ + HN +  +  L 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           H+  L+++ L +N I  I  LS L  L TL L  N+   I DI  L     L  + +S N
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKN 188

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
            I D   +     +  L VL L    C+ K  N++   +  
Sbjct: 189 HISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 12/158 (7%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
           I + + +       L+   ++     +    +  I  +++ +K ++ + ++  +  + L+
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76

Query: 95  HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
            N +  I+ L+ L  L  L L  N+   ++D+  LKD   L  + + HN I D   I   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENK---VKDLSSLKDLKKLKSLSLEHNGISD---INGL 130

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +P+L  L L +N    KI +     ++    L  L 
Sbjct: 131 VHLPQLESLYLGNN----KITDIT--VLSRLTKLDTLS 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 47  LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
                  I +I + DA  E     +    V      + +  +D I  +++ I+ ++ +  
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 66

Query: 107 LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166
           LP +  L L+ N+L  I+ + +LK+   L  + +  N+++D   +     + +L+ L+L 
Sbjct: 67  LPNVTKLFLNGNKLTDIKPLANLKN---LGWLFLDENKVKD---LSSLKDLKKLKSLSLE 120

Query: 167 HNPCVGKIKNYRRMFINLCVNLRHLD 192
           HN  +  I       +     L  L 
Sbjct: 121 HNG-ISDING-----LVHLPQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L L   G + I  L     L+ L+L NN I+ I  L   T++ ++ +  N +  +  L+
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA 175

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            +  L  + LS N I  +  L+ L  L  L L        + I H  +  + + V  +  
Sbjct: 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC-LNKPINHQSNLVVPNTVKNTDG 234

Query: 144 QIEDEEVI 151
            +   E+I
Sbjct: 235 SLVTPEII 242

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  109 bits (274), Expect = 1e-29
 Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 8/173 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
                      +  ++ +T LK L L +N IS +  L   T++  + ++ N +K +  + 
Sbjct: 45  NFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP 104

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
               L  + L +N +   ++L  L  L  L + +N+   ++ I  L     L ++D+  N
Sbjct: 105 SAC-LSRLFLDNNELRDTDSLIHLKNLEILSIRNNK---LKSIVMLGFLSKLEVLDLHGN 160

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196
           +I +         + ++  + L+   CV       +  + +   ++  D   +
Sbjct: 161 EITN---TGGLTRLKKVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  102 bits (255), Expect = 7e-27
 Identities = 28/145 (19%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
             L  +  T + + +E +G++    +N+ I  +  +   T ++ +++ HN +  +  L  
Sbjct: 24  QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKD 83

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L+ ++++ N ++ +  +     L  L L +N    + D + L     L I+ + +N+
Sbjct: 84  LTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNE---LRDTDSLIHLKNLEILSIRNNK 139

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
           ++    I + G + +L VL L  N 
Sbjct: 140 LKS---IVMLGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 97.4 bits (243), Expect = 5e-25
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 13/158 (8%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
           +             L    ++ + +    + +++    ++ ++ +  +     L  ++LS
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71

Query: 95  HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
           HN I  +  L  L  L  L ++ NRLK +  I        LS + + +N++ D    +  
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRD---TDSL 124

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +  L +L++ +N    K+K+     +     L  LD
Sbjct: 125 IHLKNLEILSIRNN----KLKSIV--MLGFLSKLEVLD 156

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.2 bits (206), Expect = 1e-19
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 49  LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
                I+++             +    V  + +   +  +   N  ++ I+ +  +    
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63

Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
            L+ LHLSHN+   I D+  LKD   L  + V+ N++++   I        L  L L +N
Sbjct: 64  NLKELHLSHNQ---ISDLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNN 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 99.4 bits (248), Expect = 6e-27
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 33  TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTIN 92
            +       + +K L L+N+  ++ +                           + L+ ++
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLE-------------------GLTDEFEELEFLS 48

Query: 93  LSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
             +  +  I NL  L  L+ L LS NR+    ++   K CP L+ +++S N+I+D   IE
Sbjct: 49  TINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIE 107

Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194
               +  L+ L L +      + +YR     L   L +LD Y
Sbjct: 108 PLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (257), Expect = 1e-26
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L L       +  +     +K L L +  I+ +  L   + ++ +Y+  N +  +  L+
Sbjct: 89  ELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLA 148

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            +  L  +++ +  +  +  L+ L  L TL    N++  I  +  L +   L  V + +N
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN---LIEVHLKNN 205

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPC 170
           QI D   +        L ++TL++   
Sbjct: 206 QISD---VSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (251), Expect = 7e-26
 Identities = 23/144 (15%), Positives = 60/144 (41%), Gaps = 6/144 (4%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           +       T      +  G+  L     G++ IE +     +  + +  N +  +  L +
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKN 83

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  +  + LS N ++ +  ++ L  ++TL L+  ++  +  +  L +   L ++ +  NQ
Sbjct: 84  LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQ 140

Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
           I +   I     +  L+ L++ + 
Sbjct: 141 ITN---ISPLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L L     T +  L   + L+ L+L+ N I+ I  L   T ++ + + +  V  +  L+
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           ++  L T+    N I  I  L+ LP L  +HL +N+   I D+  L +   L IV +++ 
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ---ISDVSPLANTSNLFIVTLTNQ 227

Query: 144 QIEDEEVIE 152
            I ++ V  
Sbjct: 228 TITNQPVFY 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 3e-22
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 30  KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLD 89
               VI           +    + ++          + ++      V  +E + ++  L 
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 90  TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
            + L  N I  +  L  L  +  L LS N LK +  I  L+    +  +D++  QI D  
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLTSTQITD-- 121

Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            +     +  L+VL L  N    +I N     +    NL++L 
Sbjct: 122 -VTPLAGLSNLQVLYLDLN----QITNIS--PLAGLTNLQYLS 157

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 5e-18
 Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 49  LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
            +   I+ I    A      I    + V      + +  + T++     +  IE +  L 
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63

Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
            L  L L  N++  +  +++L     ++ +++S N +++   +     +  ++ L L+  
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTK---ITELELSGNPLKN---VSAIAGLQSIKTLDLTST 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 24/127 (18%), Positives = 49/127 (38%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
           VLYL     T I  L   T L+ L + N  +S +  L   +++ ++    N +  +  L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            +  L  ++L +N I  +  L+    L  + L++  +       +        +   S  
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 144 QIEDEEV 150
            I    +
Sbjct: 253 PIAPATI 259

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (252), Expect = 1e-25
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L L++     I  L   T L       N I+ I  +   T + S+ + +N +  +  L++
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L  + +  N I  I  +  L  L+ L++  N++  I  + +L     L+ + +++NQ
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ---LNSLFLNNNQ 298

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
           + +E+ +EV G +  L  L LS N 
Sbjct: 299 LGNED-MEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L +       +  +   T L  L L  N I  I  L + T +     + N +  +  ++
Sbjct: 159 YLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVA 218

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           +M  L+++ + +N I  +  L+ L  L  L +  N++  I  ++ L     L +++V  N
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK---LKMLNVGSN 275

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           QI D   I V   + +L  L L++N    ++ N     I    NL  L 
Sbjct: 276 QISD---ISVLNNLSQLNSLFLNNN----QLGNEDMEVIGGLTNLTTLF 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 4e-24
 Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 24  VLYLHF-KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL 82
            L L      + +  L   TGL  L +  + +  +  +   T++ S+ +++N ++ +  L
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPL 195

Query: 83  SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
           + +  L       N I  I  ++ +  L +L + +N++  +  + +L     L+ +++  
Sbjct: 196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ---LTWLEIGT 252

Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
           NQI D   I     + +L++L +  N
Sbjct: 253 NQISD---INAVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
             L     T +   EE   +  L +    ++ I+ ++  T +  + ++ N +  +  LS+
Sbjct: 27  AVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSN 86

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L  + +  N I  I  L  L  LR L+L+ + +  I  + +L     +  +++  N 
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTK---MYSLNLGANH 143

Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
                 +     M  L  LT++ +
Sbjct: 144 N--LSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 11/168 (6%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L         I    +        L+   ++ +   +    +  + +    V  ++ + +
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L+ +NL+ N I  I  LS L  L  L++  N++  I  +++L +   L  + ++ + 
Sbjct: 65  LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN---LRELYLNEDN 121

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           I D   I     + ++  L L  N  +  +       ++    L +L 
Sbjct: 122 ISD---ISPLANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLT 161

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENL 82
            LY+     T I  L+  T L+ L+L  + IS I  L   T+M S+ +  N  +  +  L
Sbjct: 92  NLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPL 151

Query: 83  SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
           S+M  L+ + ++ + ++ +  ++ L  L +L L++N+++ I  +  L     L       
Sbjct: 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS---LHYFTAYV 208

Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
           NQI D   I     M  L  L + +N
Sbjct: 209 NQITD---ITPVANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 43  GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE 102
           G   L      I++I       E     +    V  +     ++ +  + ++   +  I+
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60

Query: 103 NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
            +  L  L  L+L+ N++  I  + +L     L+ + +  N+I D   I     +  LR 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNLVK---LTNLYIGTNKITD---ISALQNLTNLRE 114

Query: 163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           L L+ +     I +     +     +  L+
Sbjct: 115 LYLNED----NISDIS--PLANLTKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L +     T +  L   + L  L +  N IS I  +   T+++ + +  N +  +  L+
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN 284

Query: 84  HMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
           ++  L+++ L++N +     E +  L  L TL LS N +  I  +  L     +   D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK---MDSADFA 341

Query: 142 HNQIE 146
           +  I+
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 33  TVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDT 90
           + I  L   + L  L+L NN +     E +   T + ++++  N +  +  L+ +  +D+
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337

Query: 91  INLSHNFIEK 100
            + ++  I+K
Sbjct: 338 ADFANQVIKK 347

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  100 bits (251), Expect = 5e-25
 Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 5   SLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
           +L+       +    +                   EY  ++ L L +  ++ + +L+   
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463

Query: 65  EMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
            +  + + HN L  +   L+ ++ L+ +  S N +E ++ ++ LP L+ L L +NRL+  
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523

Query: 124 EDIEHLKDCPLLSIVDVSHNQI--EDEEVIEVFGAMPELRVL 163
             I+ L  CP L ++++  N +  E+     +   +P +  +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 96.4 bits (239), Expect = 2e-23
 Identities = 26/166 (15%), Positives = 67/166 (40%), Gaps = 12/166 (7%)

Query: 35  IENLEEYTGLKCLWLENNGISK-------IENLDAQTEMRSIYMHHNLVKVMENLSHMQL 87
           ++       +  +        +               ++R +++ H  + V+ +L  + L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 88  LDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
           +  ++LSHN +  +   L+ L  L  L  S N L+ ++ + +L   P L  + + +N+++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL---PRLQELLLCNNRLQ 521

Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
               I+   + P L +L L  N    + +  +     +  ++  + 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSIL 566

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L L     + +  L   T L  L L  N IS I  L   T + ++ ++ N ++ +  +S+
Sbjct: 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 307

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           ++ L  + L  N I  I  +S L  L+ L   +N++  +  + +L +   ++ +   HNQ
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQ 364

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
           I D   +     +  +  L L+         NY
Sbjct: 365 ISD---LTPLANLTRITQLGLNDQAWTNAPVNY 394

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L +     + I  L + T L+ L   NN IS I  L   T +  + ++ N +K +  L+
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            +  L  ++L++N I  +  LS L  L  L L  N++  I  +  L     L+ ++++ N
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELNEN 297

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
           Q+ED   I     +  L  LTL  N
Sbjct: 298 QLED---ISPISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.6 bits (223), Expect = 3e-21
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 27/186 (14%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L     G   I+ +E    L  +   NN ++ I  L   T++  I M++N +  +  L++
Sbjct: 51  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 110

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLK-------------- 130
           +  L  + L +N I  I+ L  L  L  L LS N +  I  +  L               
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170

Query: 131 ----DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
               +   L  +D+S N++ D   I V   +  L  L  ++N    +I +     + +  
Sbjct: 171 KPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNN----QISDIT--PLGILT 221

Query: 187 NLRHLD 192
           NL  L 
Sbjct: 222 NLDELS 227

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 4e-21
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 20  SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVM 79
            L             I             L    ++   +     ++ ++      +K +
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 80  ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
           + + ++  L  IN S+N +  I  L  L  L  + +++N++  I  + +L +   L+ + 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTN---LTGLT 118

Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           + +NQI D   I+    +  L  L LS N     I +     ++   +L+ L 
Sbjct: 119 LFNNQITD---IDPLKNLTNLNRLELSSN----TISDIS--ALSGLTSLQQLS 162

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
             L     T   +  +   +  L  +  GI  I+ ++    +  I   +N +  +  L +
Sbjct: 29  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 88

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L  I +++N I  I  L+ L  L  L L +N++  I+ +++L +   L+ +++S N 
Sbjct: 89  LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN---LNRLELSSNT 145

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           I D   I     +  L+ L+  +   V  +K      +     L  LD
Sbjct: 146 ISD---ISALSGLTSLQQLSFGNQ--VTDLKP-----LANLTTLERLD 183

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L L     + I  L   T L  L L  N +  I  +     +  + ++ N +  +  +S
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 328

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            +  L  +   +N +  + +L+ L  +  L   HN++  +  + +L     ++ + ++  
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR---ITQLGLNDQ 385

Query: 144 QIEDEEV---------------------IEVFGAMPELRVLTLSHN 168
              +  V                                   ++ N
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.3 bits (230), Expect = 1e-23
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK--VMENL 82
           + L     T +  +E    +K L + N   +    +   + +  + +    V    + NL
Sbjct: 49  ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNL 108

Query: 83  SHMQLLDTINLSHNFIE--KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
           S +  L  +++SH+  +   +  ++ LP + ++ LS+N    I DI  LK  P L  +++
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNI 166

Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175
             + + D          P+L  L       +G  K
Sbjct: 167 QFDGVHD---YRGIEDFPKLNQLYAFSQT-IGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 3e-18
 Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 36  ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH 95
              + Y       L  +  + I      + +  I + +  V  +  + +   +  + +++
Sbjct: 20  STFKAYL---NGLLGQSSTANITEAQMNS-LTYITLANINVTDLTGIEYAHNIKDLTINN 75

Query: 96  NFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
                   +S L  L  L +    + +   I +L     L+++D+SH+  +D   +    
Sbjct: 76  IHATNYNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSI-LTKIN 133

Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            +P++  + LS+N  +  I       +     L+ L+
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGIS--KIENLDAQTEMRSIYMHHNLV--KVM 79
            L ++    T    +   + L+ L +    ++  KI NL   T +  + + H+     ++
Sbjct: 70  DLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 80  ENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
             ++ +  +++I+LS+N  I  I  L  LP L++L++  +    + D   ++D P L+ +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG---VHDYRGIEDFPKLNQL 186

Query: 139 DVSHNQIEDEE 149
                 I  ++
Sbjct: 187 YAFSQTIGGKK 197

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 3e-17
 Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 15/182 (8%)

Query: 21  LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVK 77
                 L      + ++ +    ++  ++  N + +     +L    ++  +   HN V+
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 78  VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135
            +E       L  + L +N IE+I     +    +  L  SHN+LK I +I + K   ++
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 136 SIVDVSHNQIEDEEVIEVFGAMPE-----LRVLTLSHNPCVGKIKNYRRMFINLCVNLRH 190
             VD S+N+I   E   +  +M +        +TLS+N    +I+ +          +  
Sbjct: 647 GSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYN----EIQKFPTELFATGSPIST 701

Query: 191 LD 192
           + 
Sbjct: 702 II 703

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 9e-12
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 22/171 (12%)

Query: 42  TGLKCLWLENNGISKIE-------NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN 92
             +  +    N I           +        ++ + +N ++    E  +    + TI 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 93  LSHNFIEKIEN---------LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           LS+N +  I                +L T+ L  N+L ++ D       P LS +DVS+N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVG--KIKNYRRMFINLCVNLRHLD 192
                          +L+   + H       +I       I  C +L  L 
Sbjct: 764 CF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 39  EEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHN--LVKVMENLSHMQLLDTINLSH 95
                              E       ++  + +++   + ++ + L  +  L ++N++ 
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 96  NFIEKI-----------ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           N                ++    P ++  ++ +N L+       L+    L ++D  HN+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
           +     +E FG   +L  L L +N
Sbjct: 585 V---RHLEAFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 17/140 (12%)

Query: 42  TGLKCLWLENNGISKI-ENLDAQ--TEMRSIYMHHN----LVKVMENLSHMQLLD---TI 91
             L  + L  N ++ + ++  A     + ++ + +N          N S ++        
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 92  NLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           +   N I +     ++  P L  L +  N ++ +++    K  P L I+D++ N     +
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISID 843

Query: 150 VIEVFGAMPELRVLTLSHNP 169
           V  V   + E  +  L ++ 
Sbjct: 844 VTSVCPYI-EAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 36/181 (19%)

Query: 42  TGLKCLWLENNGISKIENL--DAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
           T LK L    +  +    L  D +          + +++      L + Q L+  +L  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 97  FIEKIENLSCLPVLRTLHLSH-------NRLKTIEDIEHLKDCPLLSIVDVSHNQIED-- 147
            I +   +  +     + L         NR+  I   + ++    L I+  +++      
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS--KAIQRLTKLQIIYFANSPFTYDN 464

Query: 148 ----------------EEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191
                           E     +  + +L  + L + P + ++ +    F+     L+ L
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSL 520

Query: 192 D 192
           +
Sbjct: 521 N 521

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 8/90 (8%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 81  NLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
           +L +   +  ++L+    +    + +  L  L+ L    +       +    +     + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD-EELTPDMS 376

Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +   ++I              L +  L  +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
           +  L     ++ L   +N I+ +       E+  + + HN +     L +   L  ++LS
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256

Query: 95  HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           +N +EKI       +  L  L++S+NRL  +    + +  P L ++D+SHN +    V  
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHL--LHVER 312

Query: 153 VFGAMPELRVLTLSHNP 169
                  L  L L HN 
Sbjct: 313 NQPQFDRLENLYLDHNS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
             L    +  N    +  L     +  +   HN + V+    +++L   + L HN +   
Sbjct: 186 PSLFHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDT 241

Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
             L   P L  + LS+N L+ I           L  + +S+N++           +P L+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLK 298

Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           VL LSHN     + +  R        L +L 
Sbjct: 299 VLDLSHN----HLLHVERNQPQF-DRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 38  LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
           L+ +  ++ L L +  I +I+         ++ +YM  N ++ +      ++ LL  + L
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 94  SHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
             N +  +        P L TL +S+N L+ IED +  +    L  + +S N++   +  
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-- 181

Query: 152 EVFGAMPELRVLTLSHN 168
                +P L    +S+N
Sbjct: 182 --LSLIPSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
              K +  +N+ + K+    LD+  ++  + ++   ++ ++    ++   +  + +  N 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           I  +       +P+L  L L  N L ++       + P L+ + +S+N +E  E  + F 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED-DTFQ 162

Query: 156 AMPELRVLTLSHN 168
           A   L+ L LS N
Sbjct: 163 ATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN 81
           L L     T    L  Y GL  + L  N + KI          +  +Y+ +N LV +   
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 82  LSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
              +  L  ++LSHN +  +E N      L  L+L HN + T+     L     L  + +
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTL 346

Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           SHN  +   +  +F     +    +    
Sbjct: 347 SHNDWDCNSLRALF---RNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 10/90 (11%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 81  NLSHMQLLDTINLSHNFIEKIENLS--CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
           NL +  +   +++     +         L   + +   ++ ++ +     L     + ++
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELL 74

Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +++  QIE+ +    F     ++ L +  N
Sbjct: 75  NLNDLQIEEIDT-YAFAYAHTIQKLYMGFN 103

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 9/156 (5%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----LDTINLSHNF 97
             LK L L  N  S      A   +  + +  N +      S+  L    L  ++LS N 
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 98  IEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
              +  N   L  L+ L   H+ LK + +         L  +D+S+   + +    +F  
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLG 446

Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +  L  L ++ N       +          NL  LD
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 8e-17
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            + L       +E++ ++   + L +    + +   LD    ++S+ +  N   +     
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKV 347

Query: 84  HMQLLDTINLSHNFIEKIENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
            +  L  ++LS N +      S        LR L LS N    +    +      L  +D
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLD 405

Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             H+ ++       F ++ +L  L +S+            +F+ L  +L  L 
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG---IFLGL-TSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 44  LKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHNFIE 99
           L+ L L  NG   +  N     E++ +   H+ +K +        ++ L  +++S+   +
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
              +     L  L TL ++ N  K         +   L+ +D+S  Q+E      VF  +
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTL 496

Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             L++L +SHN     +        N   +L  LD
Sbjct: 497 HRLQLLNMSHN----NLLFLDSSHYNQLYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 41  YTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
           ++ L+ L L    I  IE+        + ++ +  N ++       S +  L+ +     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 97  FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE--DEEVIE 152
            +  +E+  +  L  L+ L+++HN + + +   +  +   L  VD+S+N I+      ++
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 153 VFGAMPE-LRVLTLSHNP 169
                P+    L +S NP
Sbjct: 175 FLRENPQVNLSLDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 14/168 (8%)

Query: 33  TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSI---YMHHNLVKVMEN--LSHMQL 87
            +  N      L+ L  +++ + ++    A   +  +    + +   K+  +     +  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 88  LDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           L+T+ ++ N  +        +    L  L LS  +L+ I           L ++++SHN 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNN 508

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +   +    +  +  L  L  S N    +I+  + +  +   +L   +
Sbjct: 509 LLFLDS-SHYNQLYSLSTLDCSFN----RIETSKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 23/164 (14%)

Query: 42  TGLKCLWLENNGISKIENLDA----------QTEMRSIYMHHNLVKVMEN--LSHMQLLD 89
            GL    L         NL+              +    + +      +      +  + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 90  TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
            ++L+   I+ +E++      ++L +   +LK    +    D P L  + ++ N+     
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL----DLPFLKSLTLTMNKGSI-- 342

Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL-CVNLRHLD 192
                 A+P L  L LS N            + +L   +LRHLD
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCC---SYSDLGTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 21/166 (12%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKV-----MENLSHMQ-LLDTIN 92
             LK L + +N I   +     + + +   + + +N ++      ++ L     +  +++
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 93  LSHNFIEKIENLS-CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
           +S N I+ I++ +     L  L L  N   +      L++   L +  +   + +DE  +
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 152 E-----VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           E     +   + ++ +             +   +  +   N+  + 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLT--YTNDFSDDIVKFHCLANVSAMS 291

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN-LVKVMEN-LSHMQLLDTINLSHN 96
           T L  L +  N        +      +   + +    L ++       +  L  +N+SHN
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 97  FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
            +  +++   + L  L TL  S NR++T +          L+  ++++N +
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 25/112 (22%)

Query: 101 IENLSCLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDV 140
           +     +    T      +L  +        +++                +   L  +D+
Sbjct: 4   LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63

Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           S  +IE  E  + +  +  L  L L+ N     I+++     +   +L +L 
Sbjct: 64  SRCEIETIE-DKAWHGLHHLSNLILTGN----PIQSFSPGSFSGLTSLENLV 110

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 42  TGLKCLWLENNGISKIENLDAQ--TEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
            G K ++L NN I+ + +LD    + ++ + +  N +  +      +    L+ +NL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
           FI  ++       L+TL LS N+L  +      +    ++ + + +N++    + +    
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKL--VLIEKALRF 235

Query: 157 MPELRVLTLSHNP 169
              L    L  N 
Sbjct: 236 SQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
           +L L         +LE  + L+ L L NN + ++        + +++  +N +  +   S
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVS-CS 117

Query: 84  HMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
             Q    I L++N I  + +    C   ++ L L  N + T+   E       L  +++ 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +N I D   ++      +L+ L LS N    K+      F +    +  + 
Sbjct: 178 YNFIYD---VKGQVVFAKLKTLDLSSN----KLAFMGPEFQSA-AGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 34  VIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLD 89
           + +N       K   + ++ + +       +   ++ + +  N +  +    L+    L+
Sbjct: 5   IKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 90  TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
            +NLS N + +  +L  L  LRTL L++N ++ +     ++       +  ++N I    
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIET------LHAANNNISRVS 115

Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
                      + + L++N    KI   R +       +++LD
Sbjct: 116 ----CSRGQGKKNIYLANN----KITMLRDLDEGCRSRVQYLD 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
             L+ L L+ N I  ++      +++++ +  N L  +         +  I+L +N +  
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 101 IEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED-EEVIEVFGAMP 158
           IE  L     L    L  N        +         +  V+   ++      E    +P
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 159 EL 160
            L
Sbjct: 287 TL 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
            G K ++L NN I+ + +     ++ ++ + +  N +  +      +    L+ +NL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
           FI  ++       L+TL LS N+L  +      +    ++ + + +N++    + +    
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL--VLIEKALRF 235

Query: 157 MPELRVLTLSHNP 169
              L    L  N 
Sbjct: 236 SQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 6e-15
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
           +L L         +LE  + L+ L L NN + ++        + +++  +N +  +   S
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVS-CS 117

Query: 84  HMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
             Q    I L++N I  + +    C   ++ L L  N + T+   E       L  +++ 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +N I D   ++      +L+ L LS N    K+      F +    +  + 
Sbjct: 178 YNFIYD---VKGQVVFAKLKTLDLSSN----KLAFMGPEFQSA-AGVTWIS 220

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 25/153 (16%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 44  LKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
            K   + ++ + +       +   ++ + +  N +  +    L+    L+ +NLS N + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
           +  +L  L  LRTL L++N ++ +     ++       +  ++N I              
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQELLVGPSIET------LHAANNNISRVS----CSRGQG 121

Query: 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            + + L++N    KI   R +       +++LD
Sbjct: 122 KKNIYLANN----KITMLRDLDEGCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 80  ENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
           E   +        ++ + +++           ++ L LS N L  I     L     L +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLEL 62

Query: 138 VDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +++S N + +        ++  LR L L++N
Sbjct: 63  LNLSSNVLYE---TLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
             L+ L L+ N I  ++      +++++ +  N L  +         +  I+L +N +  
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 101 IEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
           IE  L     L    L  N        +         +  V+   ++     +       
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTG-QNEEECTV 285

Query: 160 LRVLTLSHNPC 170
             +       C
Sbjct: 286 PTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 9/156 (5%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSI-YMHHNLVKVM--ENLSHMQLLDTINLSHNFI 98
             L+   L  NG       D  ++ + +  +    VK +  +N     +    +      
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 99  EKIEN--LSCLPVLRTLHLSHNRLK--TIEDIEH-LKDCPLLSIVDVSHNQIEDEEVIEV 153
           E +       L  L+    +    +    E +E   ++      +D    Q       +V
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID-QV 355

Query: 154 FGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189
                    L         ++ N RR    L   L+
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 2e-16
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
           +  L     ++ L   +N I+ +       E+  + + HN +     L +   L  ++LS
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262

Query: 95  HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           +N +EKI       +  L  L++S+NRL  +    + +  P L ++D+SHN +    V  
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHL--LHVER 318

Query: 153 VFGAMPELRVLTLSHN 168
                  L  L L HN
Sbjct: 319 NQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 8e-15
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 12/151 (7%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
             L    +  N +S +        +  +   HN + V+    +++L   + L HN +   
Sbjct: 192 PSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDT 247

Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
             L   P L  + LS+N L+ I           L  + +S+N++           +P L+
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLK 304

Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           VL LSHN     + +  R        L +L 
Sbjct: 305 VLDLSHN----HLLHVERNQPQF-DRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
             L  L L++N ++    L     +  + + +N ++ +       MQ L+ + +S+N + 
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 100 KIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
            +      +P L+ L LSHN L  +E   +      L  + + HN I   +         
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK----LSTHH 345

Query: 159 ELRVLTLSHNP 169
            L+ LTLSHN 
Sbjct: 346 TLKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 38  LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
           L+ +  ++ L L +  I +I+         ++ +YM  N ++ +      ++ LL  + L
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 94  SHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
             N +  +        P L TL +S+N L+ IED +  +    L  + +S N++     +
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH---V 186

Query: 152 EVFGAMPELRVLTLSHN 168
           +    +P L    +S+N
Sbjct: 187 D-LSLIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
              K +  +N+ + K+    LD+  ++  + ++   ++ ++    ++   +  + +  N 
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           I  +       +P+L  L L  N L ++       + P L+ + +S+N +E  E  + F 
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED-DTFQ 168

Query: 156 AMPELRVLTLSHN 168
           A   L+ L LS N
Sbjct: 169 ATTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN 81
           L L     T    L  Y GL  + L  N + KI          +  +Y+ +N LV +   
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 82  LSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
              +  L  ++LSHN +  +E N      L  L+L HN + T+     L     L  + +
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTL 352

Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           SHN  +   +  +F  +    V     +
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 10/90 (11%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 81  NLSHMQLLDTINLSHNFIEKIENLS--CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
           NL +  +   +++     +         L   + +   ++ ++ +     L     + ++
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELL 80

Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +++  QIE+ +    F     ++ L +  N
Sbjct: 81  NLNDLQIEEIDT-YAFAYAHTIQKLYMGFN 109

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME-------NLSHMQLLDTIN 92
           +    L LE+N +  + +   D  T++  + +  N +             + ++ LD   
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD--- 84

Query: 93  LSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
           LS N +  +  N   L  L  L   H+ LK + +         L  +D+SH       V 
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVA 141

Query: 152 --EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
              +F  +  L VL ++ N           +F  L  NL  LD
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTEL-RNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 11/157 (7%)

Query: 42  TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHNF 97
           T LK L L  NG+  +  N     ++  +   H+ +K M   S    ++ L  +++SH  
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
                N   + L  L  L ++ N  +     +   +   L+ +D+S  Q+E       F 
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 196

Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           ++  L+VL +SHN       +          +L+ LD
Sbjct: 197 SLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 42  TGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
           + L+ L +  N   +    +       +  + +    ++ +     + +  L  +N+SHN
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 97  FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
               ++     CL  L+ L  S N + T +  E       L+ ++++ N  
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 44  LKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
           ++ + L+ +    I +      + ++ + +    L ++   L  +  L  + LS N  E 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 101 IENLSC--LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED-EEVIEVFGAM 157
           +  +S    P L  L +  N  +       L++   L  +D+SH+ IE  +        +
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             L+ L LS+N    +  + +      C  L  LD
Sbjct: 376 SHLQSLNLSYN----EPLSLKTEAFKECPQLELLD 406

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 11/160 (6%)

Query: 42  TGLKCLWLENNGISKIENLDAQ---TEMRSIYMHHNLVKVME----NLSHMQLLDTINLS 94
             L  L ++ N                +R + + H+ ++  +     L ++  L ++NLS
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 95  HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           +N    ++       P L  L L+  RLK  +     ++  LL ++++SH+ ++     +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQ 443

Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +F  +P L+ L L  N               L   L  L 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 10/142 (7%)

Query: 36  ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTI 91
                   L  L L    I  I      +Q  + ++ +  N +  M    LS  + L  +
Sbjct: 51  TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 92  NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
                 I  I+   L     L +L+L  N + +I+          L ++D  +N I    
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLS 169

Query: 150 VIEVFGAMPELRVLTL--SHNP 169
             E   ++ +   L+L  + N 
Sbjct: 170 K-EDMSSLQQATNLSLNLNGND 190

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 47  LWLENNGISKIE-NLDAQTEMRSIYMHHN--LVKVMENLSHMQL--LDTINLSHNFIEKI 101
           L L  N I+ IE         +S+       L+ + + L +  +  L          E I
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 102 ENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
                   C   + +++L  +    I           L  +D++   +   E+      +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHL--SELPSGLVGL 300

Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             L+ L LS N    K +N  ++  +   +L HL 
Sbjct: 301 STLKKLVLSAN----KFENLCQISASNFPSLTHLS 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             LK L+    GIS I+   L  Q  + S+Y+  N +  ++       + L  ++  +N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 98  IEKIE-----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
           I  +      +L     L +L+L+ N +  IE      D  +   ++    Q        
Sbjct: 165 IHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 153 -VFGAMPELRVLTLSHN 168
                +  L + T    
Sbjct: 222 LKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 17/161 (10%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
             L+ L L    +   +       +     + + H+L+ +        +  L  +NL  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 97  FIEKI-----ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
              K       +L  L  L  L LS   L +I+         +++ VD+SHN++    + 
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSI- 517

Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           E    +  +  L L+ N     I       + +    R ++
Sbjct: 518 EALSHLKGI-YLNLASN----HISIILPSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 71  MHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
            +  L ++   L +    + +  S N +  I+N   S L  L  L L+  ++  I + + 
Sbjct: 20  ENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DT 76

Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNL 188
            +    L  + ++ N +              L+ L          I +   + ++    L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQT----GISSIDFIPLHNQKTL 131

Query: 189 RHLD 192
             L 
Sbjct: 132 ESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF 97
             L+ L L    +S I+     +   M  + + HN +     E LSH++ +  +NL+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 98  IEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           I  I    L  L   RT++L  N L              L     +  ++ED E   +  
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNI-----YFLEWYKENMQKLEDTEDT-LCE 588

Query: 156 AMPELRVLTLSHNP 169
             P LR + LS   
Sbjct: 589 NPPLLRGVRLSDVT 602

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             L  L L+ N I+K++   L     +  + +  N +  ++N  L++   L  ++L++N 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 98  IEKI-ENLSCLPVLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEVI 151
           + K+   L+    ++ ++L +N +  I         +       S V +  N ++  E+ 
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 152 E-VFGAMPELRVLTLSHN 168
              F  +     + L + 
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMEN-LSHMQLLDTINLSHNFIE 99
             L  + + +  I+ I        +  +++  N + KV    L  +  L  + LS N I 
Sbjct: 171 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE-----DEEVIE 152
            ++N  L+  P LR LHL++N+L  +     L D   + +V + +N I      D     
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 153 VFGAMPELRVLTLSHNP 169
                     ++L  NP
Sbjct: 288 YNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 32/157 (20%)

Query: 42  TGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKV----------MENLSHMQL-- 87
             L+ L +  N I+K+     +   +M  + +  N +K           M+ LS++++  
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 88  -------------LDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDC 132
                        L  ++L  N I K++   L  L  L  L LS N +  +++   L + 
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANT 239

Query: 133 PLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           P L  + +++N++   +V         ++V+ L +N 
Sbjct: 240 PHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 23/156 (14%), Positives = 60/156 (38%), Gaps = 14/156 (8%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
                L L+NN I++I++        + ++ + +N +  +     + +  L+ + LS N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGA 156
           ++++        L+ L +  N +  +           + +V++  N ++   +    F  
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           M +L  + ++         N   +   L  +L  L 
Sbjct: 170 MKKLSYIRIADT-------NITTIPQGLPPSLTELH 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 24  VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
           +L L     T I++   +    L  L L NN ISKI         ++  +Y+  N +K +
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 80  EN--LSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEH--LKDCP 133
                  +Q L    +  N I K+     + L  +  + L  N L     IE+   +   
Sbjct: 116 PEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMK 171

Query: 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            LS + ++   I     I   G  P L  L L  N    KI       +    NL  L 
Sbjct: 172 KLSYIRIADTNITT---IPQ-GLPPSLTELHLDGN----KITKVDAASLKGLNNLAKLG 222

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 37/119 (31%)

Query: 38  LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLS 94
           L+    L  L L  N IS ++N  L     +R +++++N LVKV   L+  + +  + L 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271

Query: 95  HNFIEKIEN----------------------------------LSCLPVLRTLHLSHNR 119
           +N I  I +                                    C+ V   + L + +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 24  VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
           +L L       +       +  L+ L L  N +S +E    +    +R++ +  N +K++
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95

Query: 80  EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135
                + +  L  +++S N I  + +     L  L++L +  N L  I           L
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSL 154

Query: 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             + +    +      E    +  L VL L H   +  I++Y   F  L   L+ L+
Sbjct: 155 EQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLN-INAIRDY--SFKRL-YRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 44  LKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN-LSHMQLLDTINLSHNFIE 99
           L  L +  N I  + +        ++S+ +  N LV +     S +  L+ + L    + 
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
            I    LS L  L  L L H  +  I D    K    L ++++SH    D          
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLY-G 223

Query: 158 PELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHLD 192
             L  L+++H      +         +L V LR L+
Sbjct: 224 LNLTSLSITHC----NLTAVPYLAVRHL-VYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 47  LWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN 103
           +         + E +  +T  R + +  N +K +     +    L+ + L+ N +  +E 
Sbjct: 16  VLCHRKRFVAVPEGIPTET--RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 104 --LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
              + L  LRTL L  NRLK I           L+ +D+S N+I       +F  +  L+
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLK 131

Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            L +  N  +  I +  R F  L  +L  L 
Sbjct: 132 SLEVGDND-LVYISH--RAFSGL-NSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMENLSHMQLLDTINLSHNF 97
            GL  L L +  I+ I +        ++ + + H   L  +  N  +   L +++++H  
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           +  +    +  L  LR L+LS+N + TIE    L +   L  + +   Q+   E    F 
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEP-YAFR 293

Query: 156 AMPELRVLTLSHN 168
            +  LRVL +S N
Sbjct: 294 GLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 48/134 (35%)

Query: 38  LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           +     L+ L L  N IS IE                       L  +  L  I L    
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEG--------------------SMLHELLRLQEIQLVGGQ 283

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           +  +E      L  LR L++S N+L T+E+                           VF 
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEE--------------------------SVFH 317

Query: 156 AMPELRVLTLSHNP 169
           ++  L  L L  NP
Sbjct: 318 SVGNLETLILDSNP 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             L  L L++N I  IE   L   +++  + + HN ++++EN  LS +  L  ++L +N 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 98  IEKI-ENLSCLPVLRTLHLSHNRLKTIE-----DIEHLKDCPLLSIVDVSHNQIEDEEVI 151
           + ++   L  L +L+ ++L  N +  +       +         + + + +N +   EV 
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 152 E-VFGAMPELRVLTLSHN 168
              F  + +   +   + 
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 14/158 (8%)

Query: 44  LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKI 101
           L  L +    ++ I   D    +  +++ HN ++ +E   L     L  + L HN I  I
Sbjct: 174 LNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV-----IEVF 154
           EN  LS LP LR LHL +N+L  +     L D  LL +V +  N I    V     +   
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
                   ++L +NP V   +     F  +  +   + 
Sbjct: 291 VKRAYYNGISLFNNP-VPYWEVQPATFRCVT-DRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 31/156 (19%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--------------NLSHM 85
           + L  L + +N I K+          M  I M  N ++                  +S  
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 86  QL----------LDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCP 133
           +L          L+ ++L HN I+ IE   L     L  L L HN+++ IE+   L   P
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLP 241

Query: 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
            L  + + +N++    V      +  L+V+ L  N 
Sbjct: 242 TLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 37/180 (20%)

Query: 41  YTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENL-SHMQLLDTINLSHN 96
              L  L L NN ISKI         +++ +Y+  N LV++  NL S +  L    +  N
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDN 133

Query: 97  FIEKIEN--LSCLPVLRTLHLSHNRLK--TIED---------IEHLKDCPL--------- 134
            I K+     S L  +  + +  N L+    E             + +  L         
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193

Query: 135 -LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN-YRRMFINLCVNLRHLD 192
            L+ + + HN+I+  E+ E      +L  L L HN    +I+         L   LR L 
Sbjct: 194 TLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHN----QIRMIENGSLSFL-PTLRELH 247

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 44  LKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEK 100
           L+ +   + G+  + + +   T    + + +N +  +       +Q L  + L +N I K
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDT--TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 101 IEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
           I     S L  L+ L++S N L  I           L  + +  N+I       VF  + 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSS---LVELRIHDNRIRKVPK-GVFSGLR 147

Query: 159 ELRVLTLSHNP 169
            +  + +  NP
Sbjct: 148 NMNCIEMGGNP 158

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 37/119 (31%)

Query: 38  LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLS 94
           L  Y+ L  L L +N I  IEN  L     +R +++ +N L +V   L  ++LL  + L 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272

Query: 95  HNFIEKIEN----------------------------------LSCLPVLRTLHLSHNR 119
            N I K+                                      C+     +   + +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 17/178 (9%)

Query: 24  VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
           +L LH     +I+    +    L+ L L  N I  IE    +    + ++ +  N +  +
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 80  EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPL 134
            N    ++  L  + L +N IE I +   + +P LR L L    RL  I +    +    
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSN 186

Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           L  ++++   + +   I     + +L  L LS N  +  I+     F  L ++L+ L 
Sbjct: 187 LRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNH-LSAIR--PGSFQGL-MHLQKLW 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHN 96
           + LK LWL NN I  I +   +    +R + +     L  + E     +  L  +NL+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
            + +I NL+ L  L  L LS N L  I      +    L  + +  +QI+  E    F  
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER-NAFDN 253

Query: 157 MPELRVLTLSHN 168
           +  L  + L+HN
Sbjct: 254 LQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
           + L+ L L    + +I NL    ++  + +  N +  +       +  L  + +  + I+
Sbjct: 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
            IE      L  L  ++L+HN L  +                            ++F  +
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPH--------------------------DLFTPL 278

Query: 158 PELRVLTLSHNP 169
             L  + L HNP
Sbjct: 279 HHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
           T  + L L  N I  I+         +  + +  N ++ +E    + +  L+T+ L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH-NQIEDEEVIEVF 154
           +  I N     L  L+ L L +N +++I         P L  +D+    ++        F
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISE-GAF 181

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +  LR L L+       ++        L + L  LD
Sbjct: 182 EGLSNLRYLNLAMC----NLREI-PNLTPL-IKLDELD 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 7e-15
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 42  TGLKCLWL-ENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
             L  L L E   +  I     +    ++ + +    +K M NL+ +  L+ + +S N  
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230

Query: 99  EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
            +I       L  L+ L + ++++  IE          L  ++++HN +      ++F  
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPH-DLFTP 288

Query: 157 MPELRVLTLSHNP 169
           +  L  L L HNP
Sbjct: 289 LRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 24  VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
            L L      +I+         L+ L L  N I +IE    +    + ++ +  N + V+
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 80  EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPL 134
            +    ++  L  + L +N IE I +   + +P L  L L    +L+ I +    +    
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFN 197

Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           L  +++    I+D   +     +  L  L +S N    +I+     F  L  +L+ L 
Sbjct: 198 LKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNH-FPEIR--PGSFHGL-SSLKKLW 248

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHN 96
           + L+ LWL NN I  I +   +    +  + +     L  + E     +  L  +NL   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
            I+ + NL+ L  L  L +S N    I           L  + V ++Q+   E    F  
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIER-NAFDG 264

Query: 157 MPELRVLTLSHN 168
           +  L  L L+HN
Sbjct: 265 LASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 15/158 (9%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
           +  + L L  N I  I+         +  + +  N ++ +E    + +  L+T+ L  N+
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH-NQIEDEEVIEVF 154
           +  I +     L  LR L L +N +++I         P L  +D+    ++E       F
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISE-GAF 192

Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +  L+ L L        IK+       L V L  L+
Sbjct: 193 EGLFNLKYLNLGMC----NIKDM-PNLTPL-VGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 72  HHNLVKVMENL-SHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
              L +V + + S+ + L+   L  N I+ I+      L  L  L L  N ++ IE    
Sbjct: 63  RRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GA 118

Query: 129 LKDCPLLSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
                 L+ +++  N +    VI    F  + +LR L L +NP +  I +Y   F  +  
Sbjct: 119 FNGLASLNTLELFDNWL---TVIPSGAFEYLSKLRELWLRNNP-IESIPSY--AFNRV-P 171

Query: 187 NLRHLD 192
           +L  LD
Sbjct: 172 SLMRLD 177

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 31/202 (15%)

Query: 16  YLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN- 74
            LT     + YL +    +I+     T +    L +  I ++++       + + + +  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 75  -------LVKVMENLSHMQL-------------LDTINLSHNFIEKI----ENLSCLPVL 110
                   +K ++ L+                 L+ ++LS N +       ++      L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 111 RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
           + L LS N + T+    +      L  +D  H+ ++      VF ++  L  L +SH   
Sbjct: 376 KYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 171 VGKIKNYRRMFINLCVNLRHLD 192
                    +F  L  +L  L 
Sbjct: 434 RVAFNG---IFNGL-SSLEVLK 451

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 36  ENLEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTI 91
           ++    T LK L L  NG+  +  N     ++  +   H+ +K M   S    ++ L  +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 92  NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           ++SH       N   + L  L  L ++ N  +     +   +   L+ +D+S  Q+E   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
               F ++  L+VL +SHN       +          +L+ LD
Sbjct: 487 P-TAFNSLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 44  LKCLWLENNGISKIENLDAQTEMRSIYMHHN----LVKVMENLSHMQLLDTINLSHNFIE 99
           LK L   +N      +      +  + +  N         ++      L  ++LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 100 KI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
            +  N   L  L  L   H+ LK + +         L  +D+SH          +F  + 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS 445

Query: 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            L VL ++ N                  NL  LD
Sbjct: 446 SLEVLKMAGNSFQENFLPD---IFTELRNLTFLD 476

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 14/138 (10%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN------LVKVMENLSHMQLLDTINL 93
             L  L + +       N   +  + +  + M  N      L  +   L ++  LD   L
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD---L 477

Query: 94  SHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
           S   +E++     + L  L+ L++SHN   ++ D    K    L ++D S N I   +  
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 152 EVFGAMPELRVLTLSHNP 169
           E+      L  L L+ N 
Sbjct: 537 ELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 19/177 (10%)

Query: 10  CKDNKLY-----LTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--L 60
           C +   Y     L  S    L L F     +   +   +  L+ L L    I  IE+   
Sbjct: 14  CMELNFYKIPDNLPFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 61  DAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLS 116
            + + + ++ +  N ++ +     S +  L  +      +  +EN  +  L  L+ L+++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV----LTLSHNP 169
           HN +++ +  E+  +   L  +D+S N+I+          + ++ +    L LS NP
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 40/194 (20%)

Query: 20  SLNDVLYLHFKGYTVIENLEEYT--GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK 77
            ++ ++   F+    +E  ++    GL  L +E   ++ ++               +++ 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-----------LDDIID 276

Query: 78  VMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED------------ 125
           +   L++   + + +L    IE++++ S     + L L + +                  
Sbjct: 277 LFNCLTN---VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 126 ------IEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKIKNYR 178
                      D P L  +D+S N +  +    +       L+ L LS N     +    
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITMS 389

Query: 179 RMFINLCVNLRHLD 192
             F+ L   L HLD
Sbjct: 390 SNFLGL-EQLEHLD 402

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 16/166 (9%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN-----LVKVMENLSHMQLLD-TIN 92
             LK L + +N I   +  +  + + +   + +  N         +  L  M LL+ +++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 93  LSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
           LS N +  I+        L  L L +N          ++    L +  +   +  +E  +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 152 E-----VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           E         +  L +           + +   +F  L  N+    
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFS 288

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 21/181 (11%)

Query: 24  VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVK 77
            ++LH    + +          L  LWL +N +++I+         +  + +  N  L  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 78  VMEN-LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
           V       +  L T++L    ++++       L  L+ L+L  N L+ + D +  +D   
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGN 154

Query: 135 LSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHL 191
           L+ + +  N+I     +    F  +  L  L L  N    ++ +     F +L   L  L
Sbjct: 155 LTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAFRDL-GRLMTL 206

Query: 192 D 192
            
Sbjct: 207 Y 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             L  L L+  G+ ++          ++ +Y+  N ++ + +     +  L  + L  N 
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           I  +       L  L  L L  NR+  +      +D   L  + +  N +      E   
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT-EALA 222

Query: 156 AMPELRVLTLSHNP 169
            +  L+ L L+ NP
Sbjct: 223 PLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
              + ++L  N IS +      A   +  +++H N++  ++    + + LL+ ++LS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 98  -IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--E 152
            +  ++      L  L TLHL    L+ +      +    L  + +  N +   + +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNAL---QALPDD 147

Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRR-MFINLCVNLRHLD 192
            F  +  L  L L  N    +I +     F  L  +L  L 
Sbjct: 148 TFRDLGNLTHLFLHGN----RISSVPERAFRGL-HSLDRLL 183

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 44  LKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
           +  + L+ N I+ I++       +++++ +  N    +  +  +  +  I LS N +  +
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA---LTTIHFIPSIPDIFLSGNKLVTL 396

Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
             ++       +HLS NRL+ ++ +  L   P L I+ ++ N+       +     P L 
Sbjct: 397 PKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454

Query: 162 VLTLSHNP--CVGKIKNYRRMFINLCVNLRHLD 192
            L L  N      + +    +F  L  +L+ L 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGL-SHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 28/212 (13%)

Query: 2   TKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGIS------ 55
            +  L  +      + + + N +       +    N      L+ L +  NG +      
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

Query: 56  --------KIENLDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHNFIEKIE 102
                   +  +L     +       + +K         L+   +   ++LSH F+  + 
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-HLDLSHGFVFSLN 282

Query: 103 N--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160
           +     L  L+ L+L++N++  I D E       L ++++S+N + +      F  +P++
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKV 340

Query: 161 RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             + L  N     I   +         L+ LD
Sbjct: 341 AYIDLQKN----HIAIIQDQTFKFLEKLQTLD 368

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 38  LEEYTGLKCLWLENNGIS-KIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTIN 92
                 L+ L L +      I+         +R + +  + +  +       +  L  + 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 93  LSHNFIEKI----ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE-- 146
           L    +            L  L  L LS N+++++           L  +D S NQI   
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 147 DEEVIEVFGAMPELRVLTLSHNP 169
            E  +E       L   +L+ N 
Sbjct: 164 CEHELEPL-QGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%)

Query: 5   SLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
           S  K+    K+ LT +L  +     +   ++  L     L+ L L  N  S        +
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 65  EMRSI---YMHHNLVKVMEN-------LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRT 112
           E  S+   ++  N++++             +  L  + L+HN++  +     S L  LR 
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           L L+ NRL  +   +       L I+D+S NQ+              L VL ++HN 
Sbjct: 509 LSLNSNRLTVLSHNDLP---ANLEILDISRNQLLAPNP----DVFVSLSVLDITHNK 558

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 4e-14
 Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 14/161 (8%)

Query: 20  SLNDVLYLHFKGYTVIENLE--EYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNL 75
           +LN +   +     V+  L   E   ++ L +    +    +       +++ I + ++ 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 76  VKVMEN--LSHMQLLDTINLSHNFIEKIENLSC-----LPVLRTLHLSHNRLKTIEDIEH 128
           V ++      H++ L+ ++LS N + +    +       P L+TL LS N L++++    
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 129 L-KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +      L+ +D+S N      + +      ++R L LS  
Sbjct: 382 ILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             +K L L  N I+ I +  L A   ++ + +  + +  +E      +  L+ ++LS N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           +  + +     L  L+ L+L  N  +T+       +   L  + + + +   E     F 
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            +  L  L +        ++NY+   +    ++ HL 
Sbjct: 146 GLTSLNELEIKAL----SLRNYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
             ++ L L + GI  ++       +  + + +N L      L  +Q L    +S N ++ 
Sbjct: 410 EKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFLPRLQELY---ISRNKLKT 465

Query: 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           + + S  PVL  + +S N+LK++ D         L  + +  N
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 11/113 (9%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 42  TGLKCLWLENNGISKIEN---LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSH 95
           + LK L L  N    +         T ++++ + +     ++     + +  L+ + +  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 96  NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
             +   ++  L  +  +  L L  +    + +I        +  +++    + 
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 42  TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100
             L+ L + NN +      L     ++ +Y+  N +K + + S   +L  + +S N ++ 
Sbjct: 431 QTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS 487

Query: 101 I--ENLSCLPVLRTLHLSHNRL 120
           +       L  L+ + L  N  
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 19  PSLNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHH 73
           PS   +L L     + +         T L  L L +N ++ I +        +R + +  
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 74  NLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IE 127
           N +  ++    S +Q L+ + L +N I  ++      +  L+ L+LS N++       I+
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL--RVLTLSHNP--CVGKIKNYRRMFIN 183
                P L ++D+S N+++   +      +P      L L +NP  C  K+      +  
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQY 216

Query: 184 LCVNLRHLDDYPVFDKDRKCAE 205
                R L     F +D  C  
Sbjct: 217 -----RQLSSVMDFQEDLYCMH 233

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN----------LVKVMENLSHMQLLD 89
             L  L L NN I+ I +  L+   ++  + + HN              +  L  +  L 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 90  TINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
            +NL  N  ++I  E    L  L+ + L  N L T+       +   L  +++  N I  
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITS 598

Query: 148 EEVIEVFGAMPELRVLTLSHNP 169
            E      A   L  L +  NP
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-------VMENLSHMQLLDTIN 92
             L+ L +E+N I  I++        ++ + + ++             +L+H  L   +N
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH-ILN 387

Query: 93  LSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV 150
           L+ N I KIE+   S L  L  L L  N +      +  +    +  + +S+N+      
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT- 446

Query: 151 IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
              F  +P L+ L L        + +    F  L  NL  LD
Sbjct: 447 RNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPL-RNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
           T +  L L +N + ++        +++ S+ +  N +  +E      + +L  +NL HN 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 98  IEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           + ++  +  +    L  LHL  N ++ I++         L  +D+SHN +   ++     
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL-GTQV 142

Query: 156 AMPELRVLTLSHN 168
            +  L+ L LS+N
Sbjct: 143 QLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 44  LKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----LDTINLS 94
           L  L+L N  +      K+    A T +R++ + ++ +    N + + L    L  ++LS
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 95  HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI- 151
           +N +  + N   + LP L    L +N ++ +     L     +  +++  +  +    + 
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 152 -------EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
                    F  +  L  L +  N     I   +       +NL++L 
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDN----DIPGIKSNMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 44  LKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
           L  L LE+NG  +I  E      E++ I +  N +  +     ++   L ++NL  N I 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 100 KIENLSCLPV---LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
            +E     P    L  L +  N        E +     ++ ++ +H  I +
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDC--TCESIA--WFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 106 CLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDVSHNQI 145
           C         SH +L  +      +I  L                    L+ +DV  N I
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 146 EDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
              E  E+   +P L+VL L HN    ++          C NL  L 
Sbjct: 62  SKLEP-ELCQKLPMLKVLNLQHN----ELSQLSDKTFAFCTNLTELH 103

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 17/176 (9%)

Query: 10  CKDNKLY-----LTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--L 60
           C +   Y     L  S    L L F     + +     +  L+ L L    I  IE+   
Sbjct: 14  CMELNFYKIPDNLPFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 61  DAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLS 116
            + + + ++ +  N ++ +     S +  L  +      +  +EN  +  L  L+ L+++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIE--DEEVIEVFGAMPELRV-LTLSHNP 169
           HN +++ +  E+  +   L  +D+S N+I+      + V   MP L + L LS NP
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 44  LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH----MQLLDTINLSHNFIE 99
           LK L   +N      +      +  + +  N +      S        L  ++LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 100 KI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
            +  N   L  L  L   H+ LK + +         L  +D+SH          +F  + 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS 445

Query: 159 ELRVLTLSHNPCVGKIKNY--RRMFINLCVNLRHLD 192
            L VL ++ N      +      +F  L  NL  LD
Sbjct: 446 SLEVLKMAGN----SFQENFLPDIFTEL-RNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 8e-13
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 42  TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHNF 97
           T LK L L  NG+  +  N     ++  +   H+ +K M   S    ++ L  +++SH  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
                N   + L  L  L ++ N  +     +   +   L+ +D+S  Q+E       F 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 491

Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           ++  L+VL ++ N    ++K+      +   +L+ + 
Sbjct: 492 SLSSLQVLNMASN----QLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 24  VLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDA---QTEMRSIYMHHNLVKVM 79
            L L F G   +  N      L+ L  +++ + ++           +  + + H   +V 
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 80  EN--LSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
            N   + +  L+ + ++ N  ++    +  + L  L  L LS  +L+ +           
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS 495

Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           L +++++ NQ++      +F  +  L+ + L  NP
Sbjct: 496 LQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 49  LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
            + + +  + NL    E R  Y+ + L  +++  + +  + + +L    IE++++ S   
Sbjct: 246 FDKSALEGLCNLT-IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 109 VLRTLHLSHNRLKT------------------IEDIEHLKDCPLLSIVDVSHNQIEDEEV 150
             + L L + +                       +     D P L  +D+S N +  +  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 151 I-EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +       L+ L LS N     +      F+ L   L HLD
Sbjct: 365 CSQSDFGTTSLKYLDLSFN----GVITMSSNFLGL-EQLEHLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 42  TGLKCLWLENNGISKIENLD------AQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
           T L+ L L +N I  I   D            S+ +  N +  ++      ++L   + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KLTL 207

Query: 94  SHNFI------EKIENLSCLPVLR---TLHLSHNRLKTIEDIEHLKDCPLLSIV--DVSH 142
            +NF         I+ L+ L V R       +   L+   D   L+    L+I    +++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAY 266

Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
                +++I++F  +  +   +L   
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSV 292

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 42/206 (20%)

Query: 7   RKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTG--LKCLWLENNGISKIENL--DA 62
            KI       ++  +N     H     +     E     +   +  +     ++ L  D 
Sbjct: 82  YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141

Query: 63  QTEMRSIYMHHNLVKVMENL-----SHMQLLDTINLSHNFIEKIENLSCL----PVLRTL 113
               ++I +  N    M         ++  L ++NLS+N + +++++S +    P L+ L
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201

Query: 114 HLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173
           +LS N LK+  +++ +K                             L  L L  N     
Sbjct: 202 NLSGNELKSERELDKIKGLK--------------------------LEELWLDGNSLCDT 235

Query: 174 IK---NYRRMFINLCVNLRHLDDYPV 196
            +    Y          L  LD + +
Sbjct: 236 FRDQSTYISAIRERFPKLLRLDGHEL 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 29/196 (14%)

Query: 12  DNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGI------SKIENLDAQTE 65
            N+      L D           + +      ++ +++  N +      + ++ +    +
Sbjct: 282 CNRGISGEQLKDDW-------QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM---KK 331

Query: 66  MRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKT 122
           +  +   +N L   +        L ++NL++N I +I          +  L  +HN+LK 
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 123 IEDIEHLKDCPLLSIVDVSHNQIED------EEVIEVFGAMPELRVLTLSHNPCVGKIKN 176
           I +I   K   ++S +D S+N+I        + +         +  + LS+N      K 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 177 YRRMFINLCVNLRHLD 192
                 +    L  ++
Sbjct: 452 ----LFSTGSPLSSIN 463

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 26/149 (17%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL-------------L 88
           + +  +    N I  ++  +      + +   N+  +  NLS+ Q+             L
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI--NLSNNQISKFPKELFSTGSPL 459

Query: 89  DTINLSHNFIEKI---------ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
            +INL  N + +I         EN     +L ++ L  N+L  + D       P L  +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
           +S+N     +          L+   + + 
Sbjct: 520 LSYNSF--SKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 15/160 (9%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH-NFIEK 100
           T L+  ++ N+     EN+    E  +               +++ L  + + +   + K
Sbjct: 206 TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 101 I-ENLSCLPVLRTLHLSHNRLKTIEDIE-------HLKDCPLLSIVDVSHNQIEDEEVIE 152
           +   L  LP ++ ++++ NR  + E ++              + I+ + +N ++   V  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
               M +L +L   +N    +++     F +  + L  L+
Sbjct: 325 SLQKMKKLGMLECLYN----QLEGKLPAFGSE-IKLASLN 359

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 17/145 (11%)

Query: 36  ENLEEYTGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKV-------MENLSHM 85
           EN +    L  + L  N ++K+ +    T +     I + +N              L   
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 86  QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
            + +  +   N   +   E ++  P L  L +  N ++ + +    K  P +S++D+  N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE----KITPNISVLDIKDN 597

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
                + +       E  +  L ++
Sbjct: 598 PNISID-LSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 22/189 (11%), Positives = 55/189 (29%), Gaps = 41/189 (21%)

Query: 35  IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL-----LD 89
           I  L   T L+ L L ++G    E L     + +        K+  +     +      D
Sbjct: 101 IGQL---TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 90  TINLSHNFIEKIENLSCLP-------VLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVS 141
             +L  + I        +            +    N +  + + +  L     L    + 
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK---LRQFYMG 214

Query: 142 HNQIEDEEVIEV------------------FGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183
           ++    E + E                   +  + +L  + + + P + K+      F+ 
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLK 270

Query: 184 LCVNLRHLD 192
               ++ ++
Sbjct: 271 ALPEMQLIN 279

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L  H    T +  +E+ TGL  L   +N I+ + +L   T +  +    N +  + +++ 
Sbjct: 47  LDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL-DVTP 104

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
           +  L  +N   N + K+ ++S  P+L  L+ + N L  I+    +     L+ +D   N+
Sbjct: 105 LTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK 159

Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
                         +L  L  S N
Sbjct: 160 KIT---KLDVTPQTQLTTLDCSFN 180

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 37  NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
           + E+   L  L   N+ I+ +  ++  T +  +    N +  + +LS    L  +    N
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSN 95

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
            +  + +++ L  L  L+   N+L  ++    +   PLL+ ++ + N + + +       
Sbjct: 96  KLTNL-DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSH 146

Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
             +L  L    N  + K+       +     L  LD
Sbjct: 147 NTQLTELDCHLNKKITKLD------VTPQTQLTTLD 176

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
           + L  L      + +I +L   T++              +++H   L  ++     I ++
Sbjct: 254 SKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312

Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
            +LS  P L  L+L++  L  ++    +     L  +   +  I+D       G +P L 
Sbjct: 313 -DLSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAHIQD---FSSVGKIPALN 364

Query: 162 VLTLSHN 168
               +  
Sbjct: 365 NNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 37  NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
           ++   T L  L  + N ++K+ ++     +  +    N +  + ++SH   L  ++   N
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLN 158

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
                 +++    L TL  S N++  ++    +    LL+ ++   N I   +       
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD----LNQ 210

Query: 157 MPELRVLTLSHN 168
             +L  L  S N
Sbjct: 211 NIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 44  LKCLWLENNGISKIENLDAQ--TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
                     +   + +  +    + S+  H++ +  M  +  +  L  +  + N I  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
            +LS    L  L    N+L  ++    +     L+ ++   N++   +        P L 
Sbjct: 80  -DLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNPLLT 130

Query: 162 VLTLSHNP 169
            L  + N 
Sbjct: 131 YLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L  H        ++   T L  L    N I+++ ++     +  +    N +  + +L+ 
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQ 210

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
              L  ++ S N + +I +++ L  L     S N L  ++    +     L+ +      
Sbjct: 211 NIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD 265

Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
           + + ++        +L         
Sbjct: 266 LLEIDL----THNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 20  SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK 77
               ++Y   +G   I+  ++   T L  L  +  GI+++ +L    ++  +Y+++  + 
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELT 331

Query: 78  VMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIE----HLKDCP 133
            + ++SH   L +++  +  I+   ++  +P L     +  +  T+         L    
Sbjct: 332 EL-DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

Query: 134 LLSIVDVSHNQIE 146
              ++D   N + 
Sbjct: 391 SPDLLDQFGNPMN 403

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
             +K L L NN I+ I N  L     ++++ +  N +  +E    S +  L+ ++LS+N+
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 98  IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
           +  + +     L  L  L+L  N  KT+ +         L I+ V +     +   + F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 156 AMPELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHLD 192
            +  L  L +  +     +++Y  +   ++  N+ HL 
Sbjct: 172 GLTFLEELEIDAS----DLQSYEPKSLKSI-QNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 6   LRKICKDNKLYLTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LD 61
            + + + +       L  +   +   +T I+       T L+ L ++ + +   E   L 
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 62  AQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE----------NLSCLPV 109
           +   +  + +H     ++    +     ++ + L    ++             +L     
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
            R + ++   L  +  +  L     L  ++ S NQ++      +F  +  L+ + L  NP
Sbjct: 256 FRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCL----WLENNGISKIEN--LDAQTEMRSIYMHHN-LVK 77
           L L    Y  +     ++ L  L        +  +KI+       T +  + +  + L  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 78  VMEN-LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIE-------DIE 127
                L  +Q +  + L       +    +     +  L L    L T         +  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN-YRRMFINLCV 186
            L        V ++   +   +V+++   +  L  L  S N    ++K+    +F  L  
Sbjct: 249 SLIKKFTFRNVKITDESLF--QVMKLLNQISGLLELEFSRN----QLKSVPDGIFDRL-T 301

Query: 187 NLRHLD 192
           +L+ + 
Sbjct: 302 SLQKIW 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 7e-11
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 81  NLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIV 138
           +L  +  L+++ LS++     +    C   L +L LS N L   +  +  L  C  L  +
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +VS N ++    +     +  L VL LS N   G       +       L+HL 
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLA 184

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 81  NLSHMQLLDTINLSHNF----IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLS 136
                  L +++LS N     +  + +L     L+ L++S N L     +        L 
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 137 IVDVSHNQIEDE--EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           ++D+S N I         +     EL+ L +S N   G +       ++ CVNL  LD
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLD 206

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 42  TGLKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLV--KVMENLSHMQLLDTINLS 94
             L+ L+L+NNG +      + N    +E+ S+++  N +   +  +L  +  L  + L 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 95  HNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
            N +E +I + L  +  L TL L  N L   I     L +C  L+ + +S+N++  E  I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGE--I 506

Query: 152 -EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            +  G +  L +L LS+N   G I       +  C +L  LD
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 29/166 (17%)

Query: 42  TGLKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLVKVMENL------SHMQLLDT 90
           + L+ L +  N +S      I      TE++ + +  N                ++ L  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTC---TELKLLNISSN------QFVGPIPPLPLKSLQY 273

Query: 91  INLSHNFIE-KI-ENLSC-LPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVDVSHNQIE 146
           ++L+ N    +I + LS     L  L LS N     +        C LL  + +S N   
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSSNNFS 331

Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
            E  ++    M  L+VL LS N   G++        NL  +L  LD
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLD 374

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 64  TEMRSIYMHHNLVK--VMENLSHMQLLDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNR 119
           +      +   +          +   +  +++S+N +   I + +  +P L  L+L HN 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 120 LK-TI-EDIEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
           +  +I +++  L+    L+I+D+S N+++    I +   A+  L  + LS+N   G I
Sbjct: 668 ISGSIPDEVGDLRG---LNILDLSSNKLDGR--IPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 65  EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI 123
           ++ + ++       ++N    +          F     E L+ L      +++       
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG- 622

Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
                  +   +  +D+S+N +     I +  G+MP L +L L HN   G I
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 20/118 (16%)

Query: 82  LSHMQLLDTINLSHNFIE-KIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVD 139
           +S    L+ +++S N     I  L     L+ L +S N+L         +  C  L +++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLN 253

Query: 140 VSHNQIEDEEVIEVFGAMPE-----LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +S NQ          G +P      L+ L+L+ N   G+I ++       C  L  LD
Sbjct: 254 ISSNQFV--------GPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLD 300

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 14/131 (10%)

Query: 39  EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97
           +    L+ +   NN + ++  L     + +IY  +N L K+ +    ++ +      +N 
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNI 226

Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
           +E++  L  LP L T++  +N LKT+ D+      P L  ++V  N +      ++    
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLT-----DLPELP 276

Query: 158 PELRVLTLSHN 168
             L  L +S N
Sbjct: 277 QSLTFLDVSEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 24/156 (15%)

Query: 39  EEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
           E    L+ L    N ++++ E   +   +     +   +          LL+ + +S+N 
Sbjct: 88  ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQ 142

Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
           +EK+  L     L+ + + +N LK + +    L+       +   +NQ+E+   +     
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE------FIAAGNNQLEE---LPELQN 193

Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           +P L  +   +N     +K       +L ++L  + 
Sbjct: 194 LPFLTAIYADNN----SLKK----LPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 33  TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTI 91
             +  L+    L  ++ +NN +  + +L     + ++ +  N L  + E    +  LD  
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLD-- 283

Query: 92  NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
            +S N    +  L   P L  L+ S N ++++ D       P L  ++VS+N++      
Sbjct: 284 -VSENIFSGLSEL--PPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLI----- 330

Query: 152 EVFGAMPELRVLTLSHN 168
           E+    P L  L  S N
Sbjct: 331 ELPALPPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 27/143 (18%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
             L  L   +N I  + +L     +  + + +N L+++      ++ L     S N + +
Sbjct: 297 PNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPALPPRLERLI---ASFNHLAE 351

Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLKD-------------CPLLSIVDVSHNQIE 146
           +  L     L+ LH+ +N L+   +  E ++D                L  + V  N + 
Sbjct: 352 VPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

Query: 147 DEEVIEVFGAMPELRVLTLSHNP 169
                E       +  L ++   
Sbjct: 410 -----EFPDIPESVEDLRMNSER 427

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 19  PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-- 74
           P    +L+L            L  YT L  L L+   ++K++       + ++ + HN  
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 75  --LVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IEH 128
             L  + + L  + +LD   +S N +  +    L  L  L+ L+L  N LKT+    +  
Sbjct: 90  QSLPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
               P L  + +++N + +     +   +  L  L L  N
Sbjct: 147 T---PKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLS 94
             L  L +  N ++ +    L    E++ +Y+  N +K     ++     ++ L    L+
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS---LA 156

Query: 95  HNFIEKIEN--LSCLPVLRTLHLSHNRLKTI 123
           +N + ++    L+ L  L TL L  N L TI
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
                L +  N IS++                     + +LS +++L    +SHN I+ +
Sbjct: 21  QKTTILNISQNYISELWT-----------------SDILSLSKLRIL---IISHNRIQYL 60

Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
           +         L  L LSHN+L  I       +   L  +D+S N  +   + + FG M +
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKI-SCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 160 LRVLTLSHN 168
           L+ L LS  
Sbjct: 117 LKFLGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 42  TGLKCLWLENNGISKIENL----DAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLS 94
           T L+ L L+ N + ++  +         ++ + +  N V   E     S  + L ++N+S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 95  HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
            N +         P ++ L L  N++K+I   + +     L  ++V+ NQ++      +F
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD-GIF 464

Query: 155 GAMPELRVLTLSHNP 169
             +  L+ + L  NP
Sbjct: 465 DRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 19  PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
                +L +     + +    +   + L+ L + +N I  ++        E+  + + HN
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 75  LVKVM--ENLSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHL 129
            +  +      +++ LD   LS N  + +   +    +  L+ L LS   L+    +  +
Sbjct: 80  KLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPI 135

Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN-PCVGKIKNYRRMFINLCVNL 188
                L+I  V     E     E    + +    +L    P   +      + +    NL
Sbjct: 136 A---HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 189 RHLD 192
              +
Sbjct: 193 ELSN 196

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 41/159 (25%)

Query: 23  DVLYLHFKGYTVIE---NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK 77
             L L+   +TV+E     ++   L+ +   NN I+ IE    +  + +  I +  N ++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 78  -----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLK 130
                + + L  ++ L    L  N I  + N     L  +R L L  N++ T+       
Sbjct: 95  NVQHKMFKGLESLKTLM---LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----- 146

Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
                                  F  +  L  L L  NP
Sbjct: 147 ---------------------GAFDTLHSLSTLNLLANP 164

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 28/172 (16%)

Query: 16  YLTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQ------TEMR 67
           +L P L  VL +          E +  +  L  L L +N       L +         ++
Sbjct: 146 WLKPGLK-VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 68  SIYMHHNLVK-----VMENLSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNR 119
            + + +  ++          +    L  ++LSHN +       +      L +L+LS   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 120 LKTIEDIEHLKDC--PLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           L      + +       LS++D+S+N+++          +P++  L+L  NP
Sbjct: 265 L------KQVPKGLPAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEM-----RSIYMHHNLVKVM---ENLSHMQLLDTINL 93
             L+ L L N G+     + +         + + + HN ++      +      L+++NL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 94  SHNFIEKIENLSCLPV-LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           S   ++++     LP  L  L LS+NRL      + L   P +  + +  N   D E
Sbjct: 261 SFTGLKQVP--KGLPAKLSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 5/116 (4%)

Query: 81  NLSHMQLLDTINLSHNFIEKIENLSC-LPVLRTLHLSHNRLKTIED-IEHLKDC--PLLS 136
            +S +Q L   NL          L    P L  L+L +    T +  +  L+    P L 
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 137 IVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           ++ ++     +    E     P L  L LS NP +G+      +       L+ L 
Sbjct: 153 VLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 40/164 (24%)

Query: 17  LTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMH 72
           L  S      L       +       +T L+ L L  N I+KI++      T +  + + 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 73  HNLVK-----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED 125
            N +      + ENL  +++LD   LS+N I  + +     LP L+ L L  N+LK++ D
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLD---LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388

Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
                                      +F  +  L+ + L  NP
Sbjct: 389 --------------------------GIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 10  CKDNKLYLTPSLN---DVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENLDA-- 62
           C +  L+  P L    + + L       +          L+ L +E      +   +   
Sbjct: 17  CINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 63  -QTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE----NLSCLPVLRTLHL 115
             + +  + + +N    +E    + +  L+ + L+   ++           L  L  L L
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP--ELRVLTLSHNPC 170
             N +K I+      +     ++D++ N+++     E           +L LS    
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 7/84 (8%)

Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
           +  + LS N +  + +         L  + V             F  +  L +L L +N 
Sbjct: 32  VNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89

Query: 170 CVGKIKNY-RRMFINLCVNLRHLD 192
              +        F  L  NL  L 
Sbjct: 90  ---QFLQLETGAFNGL-ANLEVLT 109

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMENL-SHMQLLDTINLSHN 96
              + L L    +  I +        +  IY+  +  L ++  +   ++  +  I + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 97  -FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEV 153
             +  I+   L  LP+L+ L + +  LK   D+  +    +  I++++ N       +  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 154 FGAMP-ELRVLTLSHN 168
           F  +  E   L L +N
Sbjct: 151 FQGLCNETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 44  LKCLWLENN-GISKIEN--LDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHN- 96
           +  + + N   ++ I+   L     ++ + + +  +K+  +L+      +   + ++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 97  FIEKIEN--LSCLP-VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE- 152
           ++  I       L     TL L +N   +++         L ++    +  +    VI+ 
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNGTKLDAVYLNKNKYL---TVIDK 197

Query: 153 -VF-GAMPELRVLTLSHNP 169
             F G      +L +S   
Sbjct: 198 DAFGGVYSGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN--LVKVMEN-LSHMQ-LLDTINLS 94
             LK L + N G+    +L           + +  N  +  +  N    +     T+ L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 95  HNFIEKIENLS-CLPVLRTLHLSHNR-LKTIED--IEHLKDCPLLSIVDVSHNQIEDEEV 150
           +N    ++  +     L  ++L+ N+ L  I+      +      S++DVS   +     
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS--GPSLLDVSQTSV---TA 219

Query: 151 IEVFGAMPELRVLTLSHNP 169
           +     +  L+ L   +  
Sbjct: 220 LP-SKGLEHLKELIARNTW 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 39  EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97
              +GL+ L + +N ++ +  L ++  +  ++ ++N L  +    S ++ L    +S N 
Sbjct: 178 MLPSGLQELSVSDNQLASLPTLPSE--LYKLWAYNNRLTSLPALPSGLKELI---VSGNR 232

Query: 98  IEKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
           +  +  L     L+ L +S NRL ++      L        + V  NQ+    + E    
Sbjct: 233 LTSLPVL--PSELKELMVSGNRLTSLPMLPSGLL------SLSVYRNQLT--RLPESLIH 282

Query: 157 MPELRVLTLSHNP 169
           +     + L  NP
Sbjct: 283 LSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 28/143 (19%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
           +GL  LW+  N ++ +  L     ++ + +  N L  +    S +  L      +N +  
Sbjct: 121 SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPALPSELCKLW---AYNNQLTS 175

Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLK--------------DCPLLSIVDVSHNQI 145
           +  L     L+ L +S N+L ++      L                   L  + VS N++
Sbjct: 176 LPML--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 233

Query: 146 EDEEVIEVFGAMPELRVLTLSHN 168
                  +     EL+ L +S N
Sbjct: 234 T-----SLPVLPSELKELMVSGN 251

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)

Query: 40  EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----------LD 89
           EY  +   W       +     A  +     +++    +  N+    L          + 
Sbjct: 7   EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVL--NVGESGLTTLPDCLPAHIT 64

Query: 90  TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           T+ +  N +  +  L   P LRTL +S N+L ++           LSI       +    
Sbjct: 65  TLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTHLPAL- 119

Query: 150 VIEVFGAMPELRVLTLSHN 168
                     L  L +  N
Sbjct: 120 -------PSGLCKLWIFGN 131

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
           +GLK L +  N ++ +  L   +E++ + +  N L  +    S +  L    +  N + +
Sbjct: 221 SGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTR 275

Query: 101 I-ENLSCLPVLRTLHLSHNRLKTI 123
           + E+L  L    T++L  N L   
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSER 299

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 34/186 (18%), Positives = 74/186 (39%), Gaps = 18/186 (9%)

Query: 19  PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
           P     L L F     + +     +  L+ L L    I  IE+    + + + ++ +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 75  LVK-----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIE 127
            ++         LS +Q L         +  +EN  +  L  L+ L+++HN +++ +  E
Sbjct: 87  PIQSLALGAFSGLSSLQKLV---AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY-RRMFINLCV 186
           +  +   L  +D+S N+I+          + ++ +L LS +  +  +       F  +  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 187 NLRHLD 192
            L+ L 
Sbjct: 201 RLKELA 206

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 44/142 (30%)

Query: 42  TGLKCLWLENNGISKIENLDA---QTEMRSIYMHHNLVK-----VMENLSHMQLLD-TIN 92
             LK L + +N I   +  +     T +  + +  N ++      +  L  M LL+ +++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 93  LSHNFIEKIE-----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
           LS N +  I+      +     L+ L L  N+LK++ D                      
Sbjct: 184 LSLNPMNFIQPGAFKEIR----LKELALDTNQLKSVPD---------------------- 217

Query: 148 EEVIEVFGAMPELRVLTLSHNP 169
                +F  +  L+ + L  NP
Sbjct: 218 ----GIFDRLTSLQKIWLHTNP 235

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 47  LWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE 102
           + LE N I  I         ++R I + +N +  +       ++ L+++ L  N I ++ 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 103 N--LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
                 L  L+ L L+ N++  +     + L +   L+++ +  N+++       F  + 
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN---LNLLSLYDNKLQTIAK-GTFSPLR 152

Query: 159 ELRVLTLSHNP 169
            ++ + L+ NP
Sbjct: 153 AIQTMHLAQNP 163

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 26/129 (20%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
              K L L  N IS++                     +  LS +++L    LSHN I  +
Sbjct: 52  PRTKALSLSQNSISELRM-----------------PDISFLSELRVL---RLSHNRIRSL 91

Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
           +         L  L +SHNRL+ I     +     L  +D+S N  +   V + FG + +
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQNISC-CPMAS---LRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 160 LRVLTLSHN 168
           L  L LS  
Sbjct: 148 LTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 14/105 (13%)

Query: 92  NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
           +LS N I ++    +S L  LR L LSHNR++++ D         L  +DVSHN++++  
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 150 VIEVFGAMPELRVLTLSHNP--CVGKIKNYRRMFINLCVNLRHLD 192
                  M  LR L LS N    +   K     F NL   L  L 
Sbjct: 117 ----CCPMASLRHLDLSFNDFDVLPVCK----EFGNL-TKLTFLG 152

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 82  LSHMQLLDTINLSHNFIE-KIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVD 139
               +    I+L+ N +   +  +     L  L L +NR+  T+   + L     L  ++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLN 274

Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
           VS N +  E  I   G +    V   ++N C
Sbjct: 275 VSFNNLCGE--IPQGGNLQRFDVSAYANNKC 303

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 8e-06
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 21/110 (19%)

Query: 81  NLSHMQL------------LDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TIED 125
            +S  +L            L  ++LS N +E             + +HL+ N L   +  
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
           +   K+   L+ +D+ +N+I     + +    +  L  L +S N   G+I
Sbjct: 240 VGLSKN---LNGLDLRNNRIYGT--LPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 38/176 (21%)

Query: 35  IENLEEYTGLKCLWLEN-NGIS-----KIENLDAQTEMRSIYMHHNLV--KVMENLSHMQ 86
           + NL     L  L++   N +       I  L   T++  +Y+ H  V   + + LS ++
Sbjct: 72  LANL---PYLNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 87  LLDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TI-EDIEHLKDCPLLSIVDVSH 142
            L T++ S+N +   +  ++S LP L  +    NR+   I +         L + + +S 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--KLFTSMTISR 183

Query: 143 NQIEDEEVIEVFGAMPE------LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           N++         G +P       L  + LS N   G       +      N + + 
Sbjct: 184 NRLT--------GKIPPTFANLNLAFVDLSRNMLEGDAS----VLFGSDKNTQKIH 227

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 30/133 (22%)

Query: 39  EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
           E    L+ +  +NN ++ +                      E  + +++L    + +N +
Sbjct: 137 ELPALLEYINADNNQLTMLP---------------------ELPTSLEVLS---VRNNQL 172

Query: 99  EKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCP-LLSIVDVSHNQIEDEEVIEVFGA 156
             +  L     L  L +S N L+++                     N+I    + E   +
Sbjct: 173 TFLPEL--PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI--THIPENILS 228

Query: 157 MPELRVLTLSHNP 169
           +     + L  NP
Sbjct: 229 LDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
             +  L +  N +  +   +    +  +    N L  + E  + ++ L   ++ +N +  
Sbjct: 80  PQITVLEITQNALISL--PELPASLEYLDACDNRLSTLPELPASLKHL---DVDNNQLTM 134

Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
           +  L    +L  ++  +N+L  + E    L+      ++ V +NQ+       +      
Sbjct: 135 LPEL--PALLEYINADNNQLTMLPELPTSLE------VLSVRNNQLT-----FLPELPES 181

Query: 160 LRVLTLSHN 168
           L  L +S N
Sbjct: 182 LEALDVSTN 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 16/164 (9%), Positives = 43/164 (26%), Gaps = 19/164 (11%)

Query: 20  SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISK----IENLDAQTEMRSIYMHHN- 74
                       +            +        +      +E+   Q    ++ +    
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDA-TQPGRVALELRSVP 92

Query: 75  LVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDC 132
           L +  +    +  L  + +    + ++ + +     L TL L+ N L+ +   I  L   
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR- 151

Query: 133 PLLSIVDVSHN--------QIEDEEVIEVFGAMPELRVLTLSHN 168
             L  + +            +   +       +  L+ L L   
Sbjct: 152 --LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 36/182 (19%)

Query: 35  IENLEEYTGLKCLWLENNGISK----IENLDAQTEMRSIYMHHN-----------LVKVM 79
           ++      GL+ L L  N +      I +L     +R + +                   
Sbjct: 123 MQQF---AGLETLTLARNPLRALPASIASL---NRLRELSIRACPELTELPEPLASTDAS 176

Query: 80  ENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSI 137
                +  L ++ L    I  +  +++ L  L++L + ++ L  +   I HL     L  
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEE 233

Query: 138 VDVSH-NQIEDEEVIEVFGAMPELRVLTLSHN-------PCVGKIKNYRRMFINLCVNLR 189
           +D+     +       +FG    L+ L L            + ++    ++ +  CVNL 
Sbjct: 234 LDLRGCTAL--RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 190 HL 191
            L
Sbjct: 292 RL 293

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 36/168 (21%)

Query: 38  LEEYTGLKCLWLENNGIS---------------KIENLDAQTEMRSIYMHHN------LV 76
           L ++T L+ L+L NNG+                  +       +RSI    N      + 
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 77  KVMENLSHMQLLDTINLSHNFIEKI-------ENLSCLPVLRTLHLSHNRL--KTIEDI- 126
           +  +     +LL T+ +  N I          E L+    L+ L L  N         + 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM-----PELRVLTLSHNP 169
             LK  P L  + ++   +       V  A        L+ L L +N 
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 34/167 (20%)

Query: 36  ENLEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN--------------- 74
           + L +   L  + L +N           + L   T +  +Y+H+N               
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 75  LVKVMENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRL--KTIEDI 126
            + V +   +   L +I    N +E        +      +L T+ +  N +  + IE +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 127 --EHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHN 168
             E L  C  L ++D+  N               + P LR L L+  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 18/107 (16%)

Query: 80  ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDI------- 126
             L     +  I LS N I         EN++    L     S      ++D        
Sbjct: 26  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 127 --EHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHN 168
             + L  CP L  V +S N           +       L  L L +N
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-07
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHNFI 98
           +GL+C    +  +  + +L     +  +Y+ +   L  +    L  +  L  + +  + +
Sbjct: 11  SGLRCT--RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 99  EKIEN--LSCLPVLRTLHLSHNRLKTIE 124
             +        P L  L+LS N L+++ 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 96  NFIEKIENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
             ++ + +L     L  L++ + + L+ +E    L+    L  + +  + +      + F
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAP-DAF 76

Query: 155 GAMPELRVLTLSHN 168
              P L  L LS N
Sbjct: 77  HFTPRLSRLNLSFN 90

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 30/179 (16%)

Query: 19  PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENL--DAQTEMRSIYMHHN 74
           P L+++          I     +    L+ L + N GI  + ++      +   + +  N
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 75  --LVKVMENL--SHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
             +  +  N           + L+ N I++I N   +   +       +N L+ + + + 
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-DV 197

Query: 129 LKDCPLLSIVDVSHNQIED-------------------EEVIEVFGAMPELRVLTLSHN 168
                   I+D+S  +I                      + +     +  L   +L++ 
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 40/161 (24%)

Query: 42  TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENL-----SHMQLLDTINLS 94
                L      +  I+        ++  I +  N   V+E +     S++  L  I + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRIE 87

Query: 95  H-NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
             N +  I       LP L+ L +S+  +K + D                          
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-------------------------- 121

Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
                  +  +L +  N  +  I+     F+ L      L 
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILW 160

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 14/133 (10%)

Query: 47  LWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQL--LDTINLSHNF-IEKI 101
              + N +  I          ++ + + +  +K + ++  +       +++  N  I  I
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 102 ENLS---CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--EVFGA 156
           E  S          L L+ N ++ I +        L  +    +N +   E +  +VF  
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNL---EELPNDVFHG 200

Query: 157 MPELRVLTLSHNP 169
                +L +S   
Sbjct: 201 ASGPVILDISRTR 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 23  DVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK- 77
             L L     + + +      T L+ L+L +N +  +          + ++++  N ++ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 78  ----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IEHL 129
               V + L ++  L    L  N ++ +       L  L  L L +N L+++     + L
Sbjct: 100 LPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156

Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
                L  + + +NQ++       F  + EL+ L L +N 
Sbjct: 157 TS---LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 32/133 (24%)

Query: 42  TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
              K L L++N +S + +                 K    L+ ++LL    L+ N ++ +
Sbjct: 37  ADTKKLDLQSNKLSSLPS-----------------KAFHRLTKLRLLY---LNDNKLQTL 76

Query: 102 EN--LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIE--VFG 155
                  L  L TL ++ N+L+ +     + L +   L+ + +  NQ++    +   VF 
Sbjct: 77  PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKS---LPPRVFD 130

Query: 156 AMPELRVLTLSHN 168
           ++ +L  L+L +N
Sbjct: 131 SLTKLTYLSLGYN 143

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 28/159 (17%)

Query: 38  LEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN------LVKVMENLSHM 85
           L+    L+ L LE   +S          L A+ + + + + +N      +  + + L   
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 86  QL-LDTINLSHNFIEK------IENLSCLPVLRTLHLSHNRLKTIEDIEHL-----KDCP 133
              L+ + L    +           ++    LR L L  N+L     +  L         
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSS 256

Query: 134 LLSIVDVSHNQIEDE---EVIEVFGAMPELRVLTLSHNP 169
            L  + +    I  +   ++  V  A   L+ L+L+ N 
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 82  LSHMQLLDTINLSHNFI---------EKIENLSCLPVLRTLHLSHNRLKTIEDIEH---- 128
           L     L  +NL  N +         + ++  SC   ++ L L +  L T          
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNCCL-TGAGCGVLSST 108

Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAM----PELRVLTLSHN 168
           L+  P L  + +S N + D  +  +   +      L  L L + 
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 32/156 (20%)

Query: 42  TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN------LVKVMENLSHMQL-L 88
           + L+ LW+   GI+          L A+  ++ + +  N         + E L      L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 89  DTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDI------EHLKDC-PLL 135
           +++ +                L+    L  L +S+NR   +ED       + L     +L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR---LEDAGVRELCQGLGQPGSVL 372

Query: 136 SIVDVSHNQIEDE---EVIEVFGAMPELRVLTLSHN 168
            ++ ++   + D     +     A   LR L LS+N
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 105 SCLPVLRTLHLSHNRLKTIEDIEHL-KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
              P +R + L +    + E +    + CP L  +++      +  +      +P LR L
Sbjct: 460 QYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 164 TLSHNPCVGKIKNYRRMFINL-CVNLRHLD 192
            +        +     M +     N+  + 
Sbjct: 519 WVQG--YRASMTGQDLMQMARPYWNIELIP 546

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 32/169 (18%)

Query: 17  LTPSLNDVLYLHFKGYTVIENLE----EYTGLKCLWLENNGISKIENLDAQTEMRSIYMH 72
           L+P L+ +  L+        NL         LK L + + G+         + +  I   
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-------SVVEDI--- 213

Query: 73  HNLVKVMENLSHMQLLDTINLSHNF--------IEKIENLSCLPVLRTLHLSHNRL--KT 122
                +  +L +++ L       ++           + +    P L+ L +         
Sbjct: 214 -----LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268

Query: 123 IEDIEHLKDCPLLSIVDVSHNQIED---EEVIEVFGAMPELRVLTLSHN 168
           +E        P L  +D+S   + D     +++    +  L+ + + +N
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 47  LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
             L+   ++     +    +  I  +++ +K ++ + ++  +  + L  N +  I  L  
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKE 83

Query: 107 LPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164
           L  L  L L+ N+L+++ +   + L +   L  + +  NQ++      VF  +  L  L 
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQLQSLPD-GVFDKLTNLTYLN 139

Query: 165 LSHN 168
           L+HN
Sbjct: 140 LAHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 10  CKDNKLYLTPSLN-----DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
            K   +    + N     D +  +      ++ ++    ++ L L  N +  I  L   T
Sbjct: 26  LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELT 85

Query: 65  EMRSIYMHHNL-----VKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH 117
            +  + +  N        V + L++++ L    L  N ++ + +     L  L  L+L+H
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKEL---VLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 118 NRLKTIE 124
           N+L+++ 
Sbjct: 143 NQLQSLP 149

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 42  TGLKCLWLENNGISKI------ENL-DAQTEMRSIYMHHN------LVKVMENLSHMQ-L 87
             +  L L  N ++        + L      + S+ +  N        ++    S +   
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 88  LDTINLSHNFIEK------IENLSCLPVLRTLHLSHNRLKTIED------IEHLKDCPLL 135
           + ++NL  N +              L  L+T++L ++ +K +             +   +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 136 SIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHNPCVGKIKNYRRMFINLCVN--LR 189
            +VD +  +I     I +   + E      V +L +  C+   + ++    +L +   LR
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ-CLIFAQKHQTNIEDLNIPDELR 345

Query: 190 HLD 192
              
Sbjct: 346 ESI 348

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 25/93 (26%)

Query: 47  LWLENNGISKIEN---LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHNFI 98
           L L +N + +I +         +  + +  N +        E  SH+Q L    L  N  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL---QLGEN-- 88

Query: 99  EKIENLSCLPV--------LRTLHLSHNRLKTI 123
                +  +          L+TL+L  N++  +
Sbjct: 89  ----KIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.49
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.57

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=8.7e-21  Score=144.80  Aligned_cols=167  Identities=19%  Similarity=0.259  Sum_probs=109.7

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~   99 (207)
                      .+.+.+..++++.++.++.+++|+.|++++|.+..++.+..+++|++|++++|.++.++.  +..+++|++|++++|.++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  122 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ  122 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC
Confidence            445666666666666677777777777777777766666677777777777777665533  566777777777777776


Q ss_pred             cccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233        100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       100 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                      .++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..++.+++|+.|++++|.+.+..+. 
T Consensus       123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-  199 (272)
T 3rfs_A          123 SLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSVPDG-  199 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred             ccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCccCHH-
Confidence            6532  5566777777777777666443 4456667777777777777654 244456667777777777776654443 


Q ss_pred             HHHHHHhCCcceeccCc
Q psy10233        178 RRMFINLCVNLRHLDDY  194 (207)
Q Consensus       178 ~~~~~~~~~~L~~L~~~  194 (207)
                         .+..+++|+.|++.
T Consensus       200 ---~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          200 ---VFDRLTSLQYIWLH  213 (272)
T ss_dssp             ---TTTTCTTCCEEECC
T ss_pred             ---HHhCCcCCCEEEcc
Confidence               24566667666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=6.5e-20  Score=142.38  Aligned_cols=144  Identities=22%  Similarity=0.302  Sum_probs=75.3

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      .+.+++++++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.+
T Consensus        43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  122 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV  122 (308)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC
T ss_pred             cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            34455555555555555666666666666666655544555566666666666555555555555555555555555555


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +.+..+++|+.|++++|.+++.+.   +..+++|+.|++++|.+++.  +. +..+++|+.|++++|.+.
T Consensus       123 ~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          123 TPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC
T ss_pred             hhhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCccC
Confidence            445555555555555555544322   33444444444444444432  11 334444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.4e-19  Score=137.92  Aligned_cols=169  Identities=17%  Similarity=0.263  Sum_probs=125.9

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|.++.++  .+.++++|+.|++++|.+..++.  +..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            4556777777776543  57788888888888888887753  577888888888888886654  36778888888888


Q ss_pred             CCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233         95 HNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus        95 ~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      +|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCCcCCc
Confidence            88887764  26677888888888888877544 4577788888888888888774 24556778888888888888774


Q ss_pred             chhhHHHHHHHhCCcceeccCcc
Q psy10233        173 KIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       173 ~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                       ++..   .+..+++|+.|++..
T Consensus       196 -~~~~---~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          196 -VPEG---AFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -CCTT---TTTTCTTCCEEECCS
T ss_pred             -CCHH---HhccccCCCEEEecC
Confidence             3332   256778888777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.9e-20  Score=142.57  Aligned_cols=163  Identities=23%  Similarity=0.367  Sum_probs=138.5

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.++++.++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.
T Consensus        47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred             cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC
Confidence            35668888888888888899999999999999998886688899999999999999888888899999999999999988


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHH
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM  180 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  180 (207)
                      ++.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++.  +. +..+++|+.|++++|.+.+ ++.    
T Consensus       127 ~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~~-l~~----  195 (291)
T 1h6t_A          127 INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-LRA----  195 (291)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-CGG----
T ss_pred             ChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCCC-Chh----
Confidence            87788889999999999998775   3577788999999999999875  23 7788999999999998874 553    


Q ss_pred             HHHhCCcceeccCcc
Q psy10233        181 FINLCVNLRHLDDYP  195 (207)
Q Consensus       181 ~~~~~~~L~~L~~~~  195 (207)
                       +..+++|+.|++..
T Consensus       196 -l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          196 -LAGLKNLDVLELFS  209 (291)
T ss_dssp             -GTTCTTCSEEEEEE
T ss_pred             -hccCCCCCEEECcC
Confidence             56888888887753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1e-19  Score=141.27  Aligned_cols=164  Identities=18%  Similarity=0.206  Sum_probs=142.8

Q ss_pred             CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233         20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~   99 (207)
                      ...+.++++.|.++.++.+.++++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++
T Consensus        63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccC
Confidence            34567899999998777799999999999999999998889999999999999999988888899999999999999998


Q ss_pred             cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233        100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR  179 (207)
Q Consensus       100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  179 (207)
                      .++.+..+++|+.|++++|.+++++.   +..+++|+.|++++|.+++.  +. +..+++|+.|++++|.+.+. +.   
T Consensus       143 ~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~-~~---  212 (308)
T 1h6u_A          143 NISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKNNQISDV-SP---  212 (308)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTTSCCCBC-GG---
T ss_pred             cCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcC--hh-hcCCCCCCEEEccCCccCcc-cc---
Confidence            88778888999999999999987543   78889999999999999874  32 67899999999999998854 33   


Q ss_pred             HHHHhCCcceeccCcc
Q psy10233        180 MFINLCVNLRHLDDYP  195 (207)
Q Consensus       180 ~~~~~~~~L~~L~~~~  195 (207)
                        +..+++|+.|+++.
T Consensus       213 --l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          213 --LANTSNLFIVTLTN  226 (308)
T ss_dssp             --GTTCTTCCEEEEEE
T ss_pred             --ccCCCCCCEEEccC
Confidence              57889999888753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.1e-19  Score=137.14  Aligned_cols=151  Identities=22%  Similarity=0.322  Sum_probs=110.0

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|++..+  ..+.++++|+.|++++|.+...+.  +..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            345577777777544  246777888888888888777643  677788888888888776554  35677888888888


Q ss_pred             CCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233         95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus        95 ~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      +|.++.++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeC
Confidence            888777643  5667888888888888877544 4577778888888888888764 34566777888888888888765


Q ss_pred             c
Q psy10233        173 K  173 (207)
Q Consensus       173 ~  173 (207)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.2e-20  Score=147.72  Aligned_cols=168  Identities=14%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc-CCccccCCcEEecCCC-
Q psy10233         21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHN-   96 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~-   96 (207)
                      .+..+++++++++.+ +.+.++++|+.|++++|.+..+|. +..+++|++|++++|.++.++ .+..+++|++|++++| 
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC
Confidence            445667777776543 346667777777777777766553 666677777777777665443 3555555666666554 


Q ss_pred             --------------------------------cccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233         97 --------------------------------FIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN  143 (207)
Q Consensus        97 --------------------------------~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n  143 (207)
                                                      .++.+| .+..+++|+.|++++|.+++++.  .+..+++|+.|++++|
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGC  239 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTC
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCC
Confidence                                            333332 23344455555555555544322  3445555555555555


Q ss_pred             CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .+.+. ++..++.+++|+.|++++|.+.+.+|..    +..+++|+.|+++.
T Consensus       240 ~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          240 TALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRG  286 (328)
T ss_dssp             TTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTT
T ss_pred             cchhh-hHHHhcCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCC
Confidence            55443 3444555555666666655555555543    45566666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=4.5e-19  Score=135.28  Aligned_cols=155  Identities=23%  Similarity=0.310  Sum_probs=135.7

Q ss_pred             CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCC
Q psy10233         20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSH   95 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~   95 (207)
                      ...+.+++++|.++.++.+.++++|++|++++|.+..++.  +..+++|++|++++|.++..+.  +..+++|++|++++
T Consensus        63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            3456789999999888899999999999999999998854  7889999999999999976654  78899999999999


Q ss_pred             CccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233         96 NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus        96 ~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      |.++.++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+.
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCcccc
Confidence            99988753  6788999999999999988654 5678899999999999999985 456678999999999999999887


Q ss_pred             hhh
Q psy10233        174 IKN  176 (207)
Q Consensus       174 ~~~  176 (207)
                      .|.
T Consensus       221 ~~~  223 (272)
T 3rfs_A          221 CPG  223 (272)
T ss_dssp             TTT
T ss_pred             CcH
Confidence            664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=3.1e-19  Score=136.94  Aligned_cols=169  Identities=16%  Similarity=0.242  Sum_probs=91.0

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCc-cccc--cC------------
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNL-VKVM--EN------------   81 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~-~~~~--~~------------   81 (207)
                      ..+.++++++.++.++  .+.++++|+.|++++|.+..+ + .+..+++|++|++++|. +..+  ..            
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            3445666666654432  355555666666666555544 1 24455555555555553 3322  12            


Q ss_pred             ------------CccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233         82 ------------LSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus        82 ------------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                                  +..+++|++|++++|.++.++  .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccc
Confidence                        344455555555555554442  14445555555555555554332 335555666666666666655


Q ss_pred             hhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        148 EEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       148 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      . .+..+..+++|+.|++++|.+.+..+.    .+..+++|+.|+++.
T Consensus       192 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          192 V-HPHAFRDLGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLND  234 (285)
T ss_dssp             E-CTTTTTTCTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCS
T ss_pred             c-CHhHccCcccccEeeCCCCcCCcCCHH----HcccCcccCEEeccC
Confidence            3 255556666777777777766643333    356677777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=8.1e-20  Score=143.05  Aligned_cols=167  Identities=11%  Similarity=0.139  Sum_probs=125.7

Q ss_pred             CCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc-CCcc---------------------------------CCCC
Q psy10233         22 NDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE-NLDA---------------------------------QTEM   66 (207)
Q Consensus        22 ~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~-~~~~---------------------------------l~~L   66 (207)
                      .+.++++.|.++.+ ..++++++|+.|++++|.+..+| .+..                                 +++|
T Consensus       106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L  185 (328)
T 4fcg_A          106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL  185 (328)
T ss_dssp             CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred             CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence            34566666665433 33555566666666666555443 2333                                 5566


Q ss_pred             CEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233         67 RSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ  144 (207)
Q Consensus        67 ~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~  144 (207)
                      ++|++++|.++.++ .+..+++|++|++++|.+..+| .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.
T Consensus       186 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             CEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCT
T ss_pred             CEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCC
Confidence            66666666665443 4778899999999999998875 578889999999999987763 33578899999999999998


Q ss_pred             CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +.+. ++..+..+++|+.|++++|++.+.+|..    +..+++|+.+++.
T Consensus       265 ~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~----l~~L~~L~~l~l~  309 (328)
T 4fcg_A          265 NLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCIILVP  309 (328)
T ss_dssp             TCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGG----GGGSCTTCEEECC
T ss_pred             chhh-cchhhhcCCCCCEEeCCCCCchhhccHH----HhhccCceEEeCC
Confidence            8875 6777899999999999999999999986    7899999988765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=4.4e-19  Score=136.60  Aligned_cols=168  Identities=20%  Similarity=0.193  Sum_probs=115.4

Q ss_pred             CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-CccccCCcEEecCCC
Q psy10233         20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHN   96 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~   96 (207)
                      ...+.+++++|.++.+  ..+.++++|+.|++++|.+..++....+++|++|++++|.++.++. +..+++|++|++++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence            3456778888887644  3577788888888888887777665677778888888777765543 566777777777777


Q ss_pred             cccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233         97 FIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI  174 (207)
Q Consensus        97 ~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  174 (207)
                      .++.++  .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+. .+
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCC-cc
Confidence            777663  36667777777777777776544 4566677777777777777764 2345566777777777777766 45


Q ss_pred             hhHHHHHHHhCCcceeccCc
Q psy10233        175 KNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       175 ~~~~~~~~~~~~~L~~L~~~  194 (207)
                      |..    +..+.+|+.+++.
T Consensus       188 p~~----~~~~~~L~~l~L~  203 (290)
T 1p9a_G          188 PKG----FFGSHLLPFAFLH  203 (290)
T ss_dssp             CTT----TTTTCCCSEEECC
T ss_pred             Chh----hcccccCCeEEeC
Confidence            543    3345566666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=9.1e-19  Score=134.28  Aligned_cols=154  Identities=19%  Similarity=0.297  Sum_probs=125.1

Q ss_pred             CCCeEEeecCC-CcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233         21 LNDVLYLHFKG-YTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL   93 (207)
Q Consensus        21 ~~~~l~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l   93 (207)
                      ..+.++++.|. ++.+  ..+.++++|+.|++++|.+...+  .+..+++|++|++++|.++.++.  +..+++|++|++
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            34556677665 5433  45677788888888888877763  37788899999999998876643  788999999999


Q ss_pred             CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233         94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus        94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ++|.++.++  .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence            999998875  37888999999999999988644 6788899999999999999986 4677889999999999999998


Q ss_pred             cchhh
Q psy10233        172 GKIKN  176 (207)
Q Consensus       172 ~~~~~  176 (207)
                      ++.+.
T Consensus       239 c~~~~  243 (285)
T 1ozn_A          239 CDCRA  243 (285)
T ss_dssp             CSGGG
T ss_pred             CCCCc
Confidence            76553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=7.6e-19  Score=133.85  Aligned_cols=179  Identities=19%  Similarity=0.268  Sum_probs=147.8

Q ss_pred             HhhhcCCccCCC-CCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--C
Q psy10233          9 ICKDNKLYLTPS-LNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--L   82 (207)
Q Consensus         9 ~c~~~~~~~~~~-~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~   82 (207)
                      .|.|.+..|... ....++++.++++.++. +.  ++++.|++++|.+..++  .+..+++|++|++++|.++.++.  +
T Consensus         4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~   81 (270)
T 2o6q_A            4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF   81 (270)
T ss_dssp             CBGGGTCSBEEETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCCCCCCCCEeCCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence            588887776443 34678999999876653 33  67999999999999885  48899999999999999976654  6


Q ss_pred             ccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233         83 SHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL  160 (207)
Q Consensus        83 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  160 (207)
                      ..+++|++|++++|.+..++  .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..+..+++|
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  159 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSL  159 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCcc-CHhHccCCccc
Confidence            78999999999999998875  46788999999999999988655 5688999999999999999975 35567889999


Q ss_pred             cEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        161 RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       161 ~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +.|++++|.+.+..+.    .+..+++|+.|+++.
T Consensus       160 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEG----AFDKLTELKTLKLDN  190 (270)
T ss_dssp             CEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred             ceeEecCCcCcEeChh----HhccCCCcCEEECCC
Confidence            9999999998854443    267889999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=2.5e-19  Score=150.48  Aligned_cols=163  Identities=23%  Similarity=0.353  Sum_probs=137.7

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      .++.+.++.+.+..++.++.+++|+.|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..
T Consensus        44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~  123 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD  123 (605)
T ss_dssp             TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC
Confidence            34567788888888888899999999999999998887788899999999999999888888889999999999999988


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHH
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM  180 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  180 (207)
                      ++.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+.+.. +  +..+++|+.|++++|.+.+ ++.    
T Consensus       124 l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~-l~~----  192 (605)
T 1m9s_A          124 INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISD-LRA----  192 (605)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCB-CGG----
T ss_pred             CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCC-ChH----
Confidence            87788889999999999988775   36778889999999999998752 3  7788999999999998874 443    


Q ss_pred             HHHhCCcceeccCcc
Q psy10233        181 FINLCVNLRHLDDYP  195 (207)
Q Consensus       181 ~~~~~~~L~~L~~~~  195 (207)
                       +..+++|+.|++..
T Consensus       193 -l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          193 -LAGLKNLDVLELFS  206 (605)
T ss_dssp             -GTTCTTCSEEECCS
T ss_pred             -HccCCCCCEEEccC
Confidence             67888888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.81  E-value=1.1e-18  Score=137.31  Aligned_cols=164  Identities=21%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcc----------------------ccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLV----------------------KVM   79 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~----------------------~~~   79 (207)
                      .+.++++.+.+..++.+..+++|+.|++++|.+..++.+..+++|+++++++|.+                      +..
T Consensus       157 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC
Confidence            3445555555555544556666666666666655554444444555555555444                      443


Q ss_pred             cCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233         80 ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE  159 (207)
Q Consensus        80 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (207)
                      +.+..+++|++|++++|.++.++.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++. .+..+..+++
T Consensus       237 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~  312 (347)
T 4fmz_A          237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTN  312 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTT
T ss_pred             cchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCc-ChhHhhcccc
Confidence            33444445555555555444444444445555555555554443   1244445555555555555543 3444455555


Q ss_pred             CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      |+.|++++|++.+..|      +..+++|+.|++.+
T Consensus       313 L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP------LASLSKMDSADFAN  342 (347)
T ss_dssp             CSEEECCSSSCCCCGG------GGGCTTCSEESSSC
T ss_pred             CCEEEccCCccccccC------hhhhhccceeehhh
Confidence            5555555555543222      33455555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=6.7e-19  Score=128.11  Aligned_cols=147  Identities=18%  Similarity=0.299  Sum_probs=92.1

Q ss_pred             cCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc--ccCCCCCCCCcEEEcC
Q psy10233         39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK--IENLSCLPVLRTLHLS  116 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~  116 (207)
                      ..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.  .+.+..+++|+.|+++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            45566667777777666666666666777777777766666666666677777777766654  2446666677777777


Q ss_pred             CCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       117 ~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +|.+++... ..+..+++|+.|++++|. +++.  + .+..+++|+.|++++|.+.+ ++.     +..+++|+.|++..
T Consensus       121 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~-~~~-----l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          121 HSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHD-YRG-----IEDFPKLNQLYAFS  190 (197)
T ss_dssp             SSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCC-CTT-----GGGCSSCCEEEECB
T ss_pred             CCccCcHhH-HHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcC-hHH-----hccCCCCCEEEeeC
Confidence            776655222 345666677777777776 5542  2 45566677777777776653 332     45666666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=5.4e-20  Score=139.82  Aligned_cols=146  Identities=21%  Similarity=0.306  Sum_probs=107.7

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.++++.|+++.++.++.+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+.. ++|+.|++++|.++.
T Consensus        42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB
T ss_pred             cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC
Confidence            4456777777777777777778888888888877777657777788888888887776666555 778888888887777


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      ++.+..+++|+.|++++|.+++++   .+..+++|+.|++++|.+++.   ..+..+++|+.|++++|++.+.
T Consensus       121 ~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          121 TDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence            777777778888888888776652   466677788888888877763   4566777788888888876643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=2e-18  Score=130.16  Aligned_cols=180  Identities=15%  Similarity=0.206  Sum_probs=146.4

Q ss_pred             HHHhhhcCCccCCCCCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--
Q psy10233          7 RKICKDNKLYLTPSLNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--   81 (207)
Q Consensus         7 ~~~c~~~~~~~~~~~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--   81 (207)
                      +..+.|.+..|... ...+++++++++.++. +.  +.++.|++++|.+..++  .+..+++|++|++++|.++..+.  
T Consensus         2 ~~Cp~~~gC~C~~~-~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   78 (251)
T 3m19_A            2 KTCETVTGCTCNEG-KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV   78 (251)
T ss_dssp             --CHHHHSSEEEGG-GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccCCCCCceEcCCC-CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence            44566767777543 3467888888876553 33  68999999999999874  48899999999999999976643  


Q ss_pred             CccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233         82 LSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE  159 (207)
Q Consensus        82 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (207)
                      +..+++|++|++++|.++.++  .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..++.+++
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  156 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTN  156 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCcc-CHHHcCcCcC
Confidence            788999999999999998875  46788999999999999988655 5678899999999999999975 3557889999


Q ss_pred             CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      |+.|++++|.+.+..+.    .+..+++|+.|++..
T Consensus       157 L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHG----AFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHH----HHhCCCCCCEEEeeC
Confidence            99999999999865544    367889999988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=1.2e-19  Score=141.17  Aligned_cols=164  Identities=20%  Similarity=0.306  Sum_probs=114.0

Q ss_pred             Hhh--hcCCccCC----CCCCeEEeecCCCc----CccCccCCCCCCEEEeec-CCccC-cc-CCccCCCCCEEEeecCc
Q psy10233          9 ICK--DNKLYLTP----SLNDVLYLHFKGYT----VIENLEEYTGLKCLWLEN-NGISK-IE-NLDAQTEMRSIYMHHNL   75 (207)
Q Consensus         9 ~c~--~~~~~~~~----~~~~~l~l~~~~~~----~~~~l~~l~~L~~L~l~~-~~l~~-~~-~~~~l~~L~~L~l~~n~   75 (207)
                      .|.  |.|+.|+.    ..+..++++++++.    .++.++++++|+.|++++ |.+.. .| .+..+++|++|++++|.
T Consensus        33 ~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  112 (313)
T 1ogq_A           33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred             CCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe
Confidence            577  99999976    35667889999885    356789999999999995 87774 34 48888999999999998


Q ss_pred             cc-cc-cCCccccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCccCCccccccCCCCC-CccEEEccCCCCCChhh
Q psy10233         76 VK-VM-ENLSHMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCP-LLSIVDVSHNQIEDEEV  150 (207)
Q Consensus        76 ~~-~~-~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~  150 (207)
                      ++ .+ ..+..+++|++|++++|.+.. +| .+..+++|+.|++++|.+++..+ ..+..++ .|+.|++++|.+++. .
T Consensus       113 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~-~  190 (313)
T 1ogq_A          113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGK-I  190 (313)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEE-C
T ss_pred             eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeecc-C
Confidence            86 33 347788888999998888874 34 46777888888888888764222 3455555 677777777766532 3


Q ss_pred             HHHhccCCCCcEEEcCCCccccchh
Q psy10233        151 IEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       151 ~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +..+..++ |+.|++++|.+.+..|
T Consensus       191 ~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          191 PPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             CGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ChHHhCCc-ccEEECcCCcccCcCC
Confidence            33444443 5555555554443333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=3.4e-19  Score=135.41  Aligned_cols=158  Identities=18%  Similarity=0.308  Sum_probs=138.3

Q ss_pred             EEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCC
Q psy10233         25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENL  104 (207)
Q Consensus        25 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  104 (207)
                      +.++.++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+
T Consensus        24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~  103 (263)
T 1xeu_A           24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI  103 (263)
T ss_dssp             HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC
T ss_pred             HHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc
Confidence            45677788777788899999999999999999998999999999999999998887789999999999999999988776


Q ss_pred             CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHh
Q psy10233        105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL  184 (207)
Q Consensus       105 ~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  184 (207)
                      .. ++|+.|++++|.+++.   ..+..+++|+.|++++|.+++.  + .+..+++|+.|++++|.+.+. +     .+..
T Consensus       104 ~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~-~-----~l~~  170 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNT-G-----GLTR  170 (263)
T ss_dssp             CC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBC-T-----TSTT
T ss_pred             cc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcch-H-----Hhcc
Confidence            66 9999999999999875   3588899999999999999984  3 578899999999999999864 2     2678


Q ss_pred             CCcceeccCcc
Q psy10233        185 CVNLRHLDDYP  195 (207)
Q Consensus       185 ~~~L~~L~~~~  195 (207)
                      +++|+.|+++.
T Consensus       171 l~~L~~L~l~~  181 (263)
T 1xeu_A          171 LKKVNWIDLTG  181 (263)
T ss_dssp             CCCCCEEEEEE
T ss_pred             CCCCCEEeCCC
Confidence            89999888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=7.2e-20  Score=141.06  Aligned_cols=147  Identities=27%  Similarity=0.393  Sum_probs=132.6

Q ss_pred             CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233         20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~   99 (207)
                      ...+.++++.|.++.++.+.++++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++
T Consensus        68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC
Confidence            34567899999998777799999999999999999999889999999999999999998888999999999999999999


Q ss_pred             cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233        100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus       100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      .++.+..+++|+.|++++|.+++.+.   +..+++|+.|++++|.+++.  + .+..+++|+.|++++|++.+
T Consensus       148 ~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          148 DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--h-hhccCCCCCEEECcCCcccC
Confidence            88888899999999999999988543   78889999999999999984  3 37889999999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.80  E-value=2.5e-19  Score=128.08  Aligned_cols=146  Identities=25%  Similarity=0.319  Sum_probs=98.8

Q ss_pred             CccCCCCCEEEeecCccccccCCcccc-CCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         60 LDAQTEMRSIYMHHNLVKVMENLSHMQ-LLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        60 ~~~l~~L~~L~l~~n~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      +...++|++|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++++|.+++++. ..+..+++|+.|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCc-chhhcCCCCCEE
Confidence            444555666666666665555444443 666677777666666566666777777777777766433 334667778888


Q ss_pred             EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233        139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW  207 (207)
Q Consensus       139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  207 (207)
                      ++++|.+.+.+....+..+++|+.|++++|++. .+|..+...+..+++|+.||++.+...++..++.|
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~  161 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM  161 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHT
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHH
Confidence            888888876422236677888888888888876 56665555678888888888888877777666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1.6e-18  Score=141.08  Aligned_cols=147  Identities=20%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|+++.+  ..+.++++|+.|++++|.+..++  .+..+++|++|++++|.++.++.  +..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            455677777776543  34566666666666666665542  25555555555555555543321  4444455555554


Q ss_pred             CCcccccc---------------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233         95 HNFIEKIE---------------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus        95 ~~~~~~~~---------------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      +|.+..++                           .+..+++|+.|++++|.+++++   .+..+++|+.|++++|.+++
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcc
Confidence            44443221                           1333445555555555554432   23444455555555555544


Q ss_pred             hhhHHHhccCCCCcEEEcCCCccc
Q psy10233        148 EEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       148 ~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      . .+..+..+++|+.|++++|.+.
T Consensus       233 ~-~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          233 I-RPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             E-CGGGGTTCTTCCEEECTTSCCC
T ss_pred             c-CcccccCccCCCEEEeCCCcCc
Confidence            3 2334444444444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.5e-18  Score=140.93  Aligned_cols=168  Identities=20%  Similarity=0.230  Sum_probs=106.9

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc----------------
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME----------------   80 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~----------------   80 (207)
                      ..+.++++.|.++.+  ..+.++++|+.|++++|.+..++.  +..+++|++|++++|.++.++                
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            344566666666533  345666666666666666666532  556666666666666553322                


Q ss_pred             -----------CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChh
Q psy10233         81 -----------NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE  149 (207)
Q Consensus        81 -----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  149 (207)
                                 .+..+++|++|++++|.++.+|.+..+++|+.|++++|.++++.. ..+..+++|+.|++++|.++.. 
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-  246 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVI-  246 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEE-
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEE-
Confidence                       244566666666666666666666667777777777777766433 5667777777777777777764 


Q ss_pred             hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      .+..+..+++|+.|++++|.+.+..+.    .+..+++|+.|++.
T Consensus       247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLH  287 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECC
T ss_pred             ChhhhcCCCCCCEEECCCCCCCccChh----HhccccCCCEEEcC
Confidence            355666777777888887777643333    25567777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=2.2e-18  Score=140.36  Aligned_cols=170  Identities=20%  Similarity=0.214  Sum_probs=137.2

Q ss_pred             CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc---------------
Q psy10233         20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME---------------   80 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~---------------   80 (207)
                      ...+.++++.|.++.+  ..+.++++|+.|++++|.+..++.  +..+++|++|++++|.++.++               
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            3456788999988654  468889999999999999988753  788999999999998775332               


Q ss_pred             ------------CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233         81 ------------NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus        81 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~  148 (207)
                                  .+..+++|++|++++|.+..+|.+..+++|+.|++++|.++++.+ ..+..+++|+.|++++|.++..
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEE
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceE
Confidence                        144567788888888888888888888999999999999988644 6788899999999999999875


Q ss_pred             hhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        149 EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       149 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                       .+..+..+++|+.|++++|.+.+..+.    .+..+++|+.|++..
T Consensus       258 -~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          258 -ERNAFDGLASLVELNLAHNNLSSLPHD----LFTPLRYLVELHLHH  299 (452)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSCCCTT----SSTTCTTCCEEECCS
T ss_pred             -CHHHhcCCCCCCEEECCCCcCCccChH----HhccccCCCEEEccC
Confidence             467788899999999999998744333    356788899888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=7.8e-18  Score=132.39  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=120.3

Q ss_pred             CCCeEEeecC-CCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccc--------------
Q psy10233         21 LNDVLYLHFK-GYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHM--------------   85 (207)
Q Consensus        21 ~~~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------   85 (207)
                      ..+.+++++| ....++.+..+++|+.|++++|.+...+.+..+++|++|++++|.+..++.+..+              
T Consensus       133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence            4556788888 4466777899999999999999999887789999999999999988766544444              


Q ss_pred             --------cCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233         86 --------QLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM  157 (207)
Q Consensus        86 --------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  157 (207)
                              ++|++|++++|.+..++.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++.   ..+..+
T Consensus       213 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~l  286 (347)
T 4fmz_A          213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI---SVLNNL  286 (347)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC---GGGGGC
T ss_pred             CCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC---hhhcCC
Confidence                    45555555555555554455566666666666666553   2466677788888888877763   345677


Q ss_pred             CCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       158 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ++|+.|++++|.+.+..+.    .+..+++|+.|+++..
T Consensus       287 ~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChh----HhhccccCCEEEccCC
Confidence            8888888888887765554    3667888888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=3.6e-19  Score=137.86  Aligned_cols=170  Identities=21%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             CCCeEEeecCCCcCccC--ccCCCCCCEEEeecCCccCc----cCCccCCCCCEEEeecCcccccc--------------
Q psy10233         21 LNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKI----ENLDAQTEMRSIYMHHNLVKVME--------------   80 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~--------------   80 (207)
                      ..+.+++++|+++.++.  +.++++|+.|++++|.+...    ..+..+++|++|++++|.+..++              
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            45668888888865543  67788888888888877643    12333455555555555443322              


Q ss_pred             ------------CCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233         81 ------------NLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus        81 ------------~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                                  .+..+++|++|++++|.+... + .+..+++|+.|++++|.+++...+..+..+++|+.|++++|.++
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence                        244455555555555555433 1 24455666666666666554222245666677777777777776


Q ss_pred             ChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       147 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +. .+..+..+++|+.|++++|.+.+..+..    +..+++|+.|++++
T Consensus       189 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~  232 (306)
T 2z66_A          189 QL-SPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSL  232 (306)
T ss_dssp             EE-CTTTTTTCTTCCEEECTTSCCSBCCSGG----GTTCTTCCEEECTT
T ss_pred             Cc-CHHHhcCCCCCCEEECCCCccCccChhh----ccCcccCCEeECCC
Confidence            54 2556666777777777777766433322    45667777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=9.2e-19  Score=127.39  Aligned_cols=146  Identities=19%  Similarity=0.242  Sum_probs=125.7

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcccc--ccCCccccCCcEEecCCCcc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~~~   98 (207)
                      ..+.+++++++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.  +..+..+++|++|++++|.+
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            4567899999998878899999999999999988888888999999999999999975  56789999999999999999


Q ss_pred             ccc--cCCCCCCCCcEEEcCCCc-cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233         99 EKI--ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus        99 ~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      ...  +.+..+++|+.|++++|. ++.++   .+..+++|+.|++++|.+++.  + .+..+++|+.|++++|++.+
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC----
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcccCC
Confidence            863  458889999999999997 77653   578889999999999999984  3 67789999999999999753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=136.86  Aligned_cols=169  Identities=17%  Similarity=0.269  Sum_probs=137.0

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|+++.++  .+.++++|+.|++++|.+...+  .+..+++|++|++++|.++.++.  +..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            5567888888887654  5889999999999999988873  38889999999999999876653  7788999999999


Q ss_pred             CCccccccC---CCCCCCCcEEEcCCC-ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233         95 HNFIEKIEN---LSCLPVLRTLHLSHN-RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC  170 (207)
Q Consensus        95 ~~~~~~~~~---~~~~~~L~~L~l~~n-~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~  170 (207)
                      +|.++.++.   +..+++|+.|++++| .++.++. ..+..+++|+.|++++|.+++. .+..++.+++|+.|++++|.+
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCcc
Confidence            999888754   677899999999998 4655433 5788889999999999998875 467788899999999999987


Q ss_pred             ccchhhHHHHHHHhCCcceeccCcc
Q psy10233        171 VGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       171 ~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      . .++..   ....+++|+.|+++.
T Consensus       211 ~-~~~~~---~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          211 I-LLLEI---FVDVTSSVECLELRD  231 (353)
T ss_dssp             T-THHHH---HHHHTTTEEEEEEES
T ss_pred             c-cchhh---hhhhcccccEEECCC
Confidence            5 55543   466788888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=3.4e-18  Score=130.54  Aligned_cols=180  Identities=18%  Similarity=0.268  Sum_probs=132.6

Q ss_pred             hhhcCCccCC----CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233         10 CKDNKLYLTP----SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME-   80 (207)
Q Consensus        10 c~~~~~~~~~----~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~-   80 (207)
                      |...+....|    ...+.+++++|+++.++  .+.++++|+.|++++|.+..++  .+..+++|++|++++|.++..+ 
T Consensus        14 c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             CTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             ecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence            4444444333    34667899999987553  6888999999999999998874  4888999999999999887654 


Q ss_pred             -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhc--
Q psy10233         81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG--  155 (207)
Q Consensus        81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--  155 (207)
                       .+..+++|++|++++|.+..++  .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++.. +..+.  
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l  172 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVL  172 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhh
Confidence             4788999999999999888774  47788999999999999887544457888889999999999887632 22222  


Q ss_pred             -cC------------------------CCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        156 -AM------------------------PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       156 -~~------------------------~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                       .+                        .+|+.|++++|.+.+ +|..   .+..+++|+.|+++
T Consensus       173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~---~~~~l~~L~~L~l~  232 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDG---IFDRLTSLQKIWLH  232 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTT---TTTTCCSCCEEECC
T ss_pred             hhccccceeeecCCCcccccCccccCCCcccEEECCCCceee-cCHh---HhcccccccEEEcc
Confidence             22                        256667777776653 3322   24667777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=123.82  Aligned_cols=150  Identities=20%  Similarity=0.253  Sum_probs=127.4

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc-C--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE-N--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF   97 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~   97 (207)
                      ..++++.++++.++. .-...++.|++++|.+..++ .  +..+++|++|++++|.++.++  .+..+++|++|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            467888888876553 11345789999999999873 2  789999999999999998764  48899999999999999


Q ss_pred             ccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         98 IEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        98 ~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      ++.++  .+..+++|+.|++++|.++++.+ ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            98874  37889999999999999988654 6788999999999999999985 37788899999999999999987665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1.6e-17  Score=123.63  Aligned_cols=169  Identities=17%  Similarity=0.244  Sum_probs=134.8

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCcc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFI   98 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~   98 (207)
                      ..++++.++++.++. .-.++|+.|++++|.+..++  .+..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus        22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            346677777765543 22388999999999999873  38899999999999999977653  78899999999999999


Q ss_pred             ccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh-
Q psy10233         99 EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK-  175 (207)
Q Consensus        99 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-  175 (207)
                      +.++.  +..+++|+.|++++|.++.++.  .+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+ 
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            98853  6789999999999999987654  678889999999999999975 34678889999999999999987654 


Q ss_pred             --hHHHHHHHhCCcceeccCcc
Q psy10233        176 --NYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       176 --~~~~~~~~~~~~L~~L~~~~  195 (207)
                        .....+......+..++...
T Consensus       178 ~~~l~~~~~~~~~~~~~~~g~~  199 (229)
T 3e6j_A          178 IMYLRNWVADHTSIAMRWDGKA  199 (229)
T ss_dssp             GHHHHHHHHHCGGGEEEESSSE
T ss_pred             hHHHHHHHHhCccccccccCcc
Confidence              22333455556666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=1.9e-18  Score=129.34  Aligned_cols=170  Identities=12%  Similarity=0.161  Sum_probs=126.6

Q ss_pred             CCCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCC-ccCcc--CCccCCCCCEEEeec-Ccccccc--CCccccCCcE
Q psy10233         19 PSLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNG-ISKIE--NLDAQTEMRSIYMHH-NLVKVME--NLSHMQLLDT   90 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~-l~~~~--~~~~l~~L~~L~l~~-n~~~~~~--~~~~~~~L~~   90 (207)
                      +...+.+++++|+++.++  .+.++++|+.|++++|. +..++  .+..+++|++|++++ |.++.++  .+..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            345677889999887654  47889999999999996 87774  477889999999998 8887664  3678888999


Q ss_pred             EecCCCccccccCCCCCCCCc---EEEcCCC-ccCCccccccCCCCCCcc-EEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233         91 INLSHNFIEKIENLSCLPVLR---TLHLSHN-RLKTIEDIEHLKDCPLLS-IVDVSHNQIEDEEVIEVFGAMPELRVLTL  165 (207)
Q Consensus        91 L~l~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~l~l  165 (207)
                      |++++|.++.+|.+..+++|+   .|++++| .++.++. ..+..+++|+ .+++++|.++..+ ...+.. ++|+.|++
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEc
Confidence            999988888877777777777   8888888 7777544 5577788888 8888888887532 233333 67888888


Q ss_pred             CCCc-cccchhhHHHHHHHhC-CcceeccCcc
Q psy10233        166 SHNP-CVGKIKNYRRMFINLC-VNLRHLDDYP  195 (207)
Q Consensus       166 ~~n~-~~~~~~~~~~~~~~~~-~~L~~L~~~~  195 (207)
                      ++|+ +. .++..   .+..+ ++|+.|+++.
T Consensus       187 ~~n~~l~-~i~~~---~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          187 NKNKYLT-VIDKD---AFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             TTCTTCC-EECTT---TTTTCSBCCSEEECTT
T ss_pred             CCCCCcc-cCCHH---HhhccccCCcEEECCC
Confidence            8885 65 34332   25566 7788777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.2e-17  Score=123.58  Aligned_cols=149  Identities=19%  Similarity=0.337  Sum_probs=127.4

Q ss_pred             CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCc
Q psy10233         23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF   97 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~   97 (207)
                      ..+++++++++.++. +.  ++++.|++++|.+..++  .+..+++|++|++++|.++.+  ..|..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467888888876553 33  68999999999999875  488999999999999999766  458899999999999999


Q ss_pred             cccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        98 ~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      ++.++.  +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.++..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            998854  6788999999999999988654 6788999999999999999986 35678889999999999999876544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=2.2e-17  Score=127.10  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=132.5

Q ss_pred             CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCC
Q psy10233         20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHN   96 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~   96 (207)
                      ...+.++++.|.++.++..+.+++|+.|++++|.+..++. +..+++|++|++++|.++.++  .+..+++|++|++++|
T Consensus        55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence            4556789999999887777899999999999999998875 788999999999999998764  3889999999999999


Q ss_pred             ccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233         97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI  174 (207)
Q Consensus        97 ~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  174 (207)
                      .++.++.  +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.  ++..+...+.|+.+++++|++.+..
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCccCcC
Confidence            9988753  6788999999999999998655 667889999999999999997  5666677889999999999987543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=3.1e-18  Score=132.59  Aligned_cols=168  Identities=17%  Similarity=0.229  Sum_probs=135.4

Q ss_pred             CCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc---CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCC
Q psy10233         22 NDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE---NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSH   95 (207)
Q Consensus        22 ~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~   95 (207)
                      .+.+++++|.+..+ ..+.++++|+.|++++|.+...+   .+..+++|++|++++|.+...  ..+..+++|++|++++
T Consensus        80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            44566666666433 34778889999999999888764   478889999999999988644  3478899999999999


Q ss_pred             Ccccc--cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233         96 NFIEK--IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus        96 ~~~~~--~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      |.+..  .| .+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcc
Confidence            99875  34 57888999999999999988644 5788899999999999999875 34567889999999999999987


Q ss_pred             chhhHHHHHHHhC-CcceeccCcc
Q psy10233        173 KIKNYRRMFINLC-VNLRHLDDYP  195 (207)
Q Consensus       173 ~~~~~~~~~~~~~-~~L~~L~~~~  195 (207)
                      ..+..    +..+ ++|+.|+++.
T Consensus       238 ~~~~~----~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          238 SKKQE----LQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             CSSSS----CCCCCTTCCEEECTT
T ss_pred             cCHHH----HHhhhccCCEEEccC
Confidence            77654    5566 4899888864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=9.4e-18  Score=136.16  Aligned_cols=168  Identities=20%  Similarity=0.260  Sum_probs=111.6

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~   94 (207)
                      ..+.++++.|.++.+  ..+.++++|+.|++++|.+..++  .|..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            456789999998755  57889999999999999998874  4888999999999999997765  37889999999999


Q ss_pred             CCcccccc--CCCCCCCCcEEEcCCCc-cCCccccccCCCCC----------------------CccEEEccCCCCCChh
Q psy10233         95 HNFIEKIE--NLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCP----------------------LLSIVDVSHNQIEDEE  149 (207)
Q Consensus        95 ~~~~~~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~----------------------~L~~L~l~~n~l~~~~  149 (207)
                      +|.+..++  .+..+++|+.|++++|. +..++. ..+..++                      +|+.|++++|.+++. 
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-
Confidence            99887663  25555666666665532 222221 2344444                      455555555555443 


Q ss_pred             hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      .+..+..+++|+.|++++|.+.+..+..    +..+++|+.|+++
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~  263 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNA----FDNLQSLVEINLA  263 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTS----STTCTTCCEEECT
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhh----hcCCCCCCEEECC
Confidence            2444455555555555555554333322    4455666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.4e-17  Score=136.05  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=77.7

Q ss_pred             EEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCC
Q psy10233         25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENL  104 (207)
Q Consensus        25 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  104 (207)
                      +++++|.++.++.+..+++|+.|++++|.+...+.+..+++|++|++++|.+...+.+..+++|+.|++++|.+..++.+
T Consensus       226 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~  305 (466)
T 1o6v_A          226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI  305 (466)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGG
T ss_pred             EECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhh
Confidence            33444444333344444444444444444444433444444444455444444443344445555555555555444434


Q ss_pred             CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHh
Q psy10233        105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL  184 (207)
Q Consensus       105 ~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  184 (207)
                      ..+++|+.|++++|.+++.++   +..+++|+.|++++|.+++.   ..+..+++|+.|++++|.+.+..|      +..
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~------~~~  373 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP------LAN  373 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG------GTT
T ss_pred             cCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch------hhc
Confidence            445555555555555544322   34455555666666655542   234555666666666666554443      345


Q ss_pred             CCcceeccCc
Q psy10233        185 CVNLRHLDDY  194 (207)
Q Consensus       185 ~~~L~~L~~~  194 (207)
                      +++|+.|++.
T Consensus       374 l~~L~~L~l~  383 (466)
T 1o6v_A          374 LTRITQLGLN  383 (466)
T ss_dssp             CTTCCEEECC
T ss_pred             CCCCCEEecc
Confidence            5666655544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.76  E-value=8.9e-18  Score=137.48  Aligned_cols=170  Identities=17%  Similarity=0.189  Sum_probs=139.0

Q ss_pred             CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233         20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL   93 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l   93 (207)
                      ...+.++++.|.++.+  ..+.++++|++|++++|.+..+ + .+..+++|++|++++|.++.++.  +..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            3567789999998755  4688999999999999999887 3 48899999999999999877653  788999999999


Q ss_pred             CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233         94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus        94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ++|.+..++  .+..+++|+.|++++|.++.+.. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc
Confidence            999988762  47788999999999999887544 5788899999999999999875 3567788999999999999887


Q ss_pred             cchhhHHHHHHHhCCcceeccCcc
Q psy10233        172 GKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       172 ~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +..+.    .+..+++|+.|+++.
T Consensus       190 ~~~~~----~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          190 AIRDY----SFKRLYRLKVLEISH  209 (477)
T ss_dssp             EECTT----CSCSCTTCCEEEEEC
T ss_pred             EeChh----hcccCcccceeeCCC
Confidence            54443    256777777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=3.5e-17  Score=133.72  Aligned_cols=144  Identities=27%  Similarity=0.342  Sum_probs=77.2

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      .+.++++.|.++.++.+.++++|+.|++++|.+...+.+..+++|++|++++|.++.++.+..+++|+.|++++|.+...
T Consensus       179 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc
Confidence            44566666666655556666666666666666665544555566666666666555555555555566666665555554


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +.+..+++|+.|++++|.+++.+.   +..+++|+.|++++|.+.+..  . +..+++|+.|++++|.+.
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          259 APLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCS
T ss_pred             hhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCC
Confidence            444455555555555555544322   334444444555444444321  1 334444444444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=5.4e-18  Score=131.81  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             CcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233        110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR  189 (207)
Q Consensus       110 L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~  189 (207)
                      |+.|++++|.+++.. +..+..+++|+.|++++|.++..  +..+..+++|+.|++++|.+.+.+|..    +..+++|+
T Consensus       199 L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~  271 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLH  271 (313)
T ss_dssp             CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGG----GGGCTTCC
T ss_pred             ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChH----HhcCcCCC
Confidence            444444444433321 13455556666666666666542  222455566666666666666555553    45566666


Q ss_pred             eccCc
Q psy10233        190 HLDDY  194 (207)
Q Consensus       190 ~L~~~  194 (207)
                      .|+++
T Consensus       272 ~L~Ls  276 (313)
T 1ogq_A          272 SLNVS  276 (313)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            66554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=5.3e-17  Score=118.89  Aligned_cols=150  Identities=23%  Similarity=0.315  Sum_probs=113.4

Q ss_pred             eEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233         24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~   99 (207)
                      .+.++.++++.++. .-.++++.|++++|.+..++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++
T Consensus        11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            34555666654432 224578889999988887753  6788889999999888876643  677888999999988888


Q ss_pred             cccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233        100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       100 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      .++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+..+.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecCCCC
Confidence            7743  6678889999999988887544 4577888899999999888864 345577888899999999888776553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=1.5e-17  Score=124.36  Aligned_cols=167  Identities=14%  Similarity=0.222  Sum_probs=138.0

Q ss_pred             CCCCeEEeecCC-CcCcc--CccCCCCCCEEEeec-CCccCcc--CCccCCCCCEEEeecCccccccCCccccCCc---E
Q psy10233         20 SLNDVLYLHFKG-YTVIE--NLEEYTGLKCLWLEN-NGISKIE--NLDAQTEMRSIYMHHNLVKVMENLSHMQLLD---T   90 (207)
Q Consensus        20 ~~~~~l~l~~~~-~~~~~--~l~~l~~L~~L~l~~-~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~---~   90 (207)
                      ...+.++++.|. ++.++  .+.++++|+.|++++ |.+..++  .+..+++|++|++++|.++.++.+..+++|+   +
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~  134 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI  134 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccE
Confidence            456679999997 76554  678999999999998 9999875  3788999999999999998887788888888   9


Q ss_pred             EecCCC-ccccccC--CCCCCCCc-EEEcCCCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccC-CCCcEEE
Q psy10233         91 INLSHN-FIEKIEN--LSCLPVLR-TLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAM-PELRVLT  164 (207)
Q Consensus        91 L~l~~~-~~~~~~~--~~~~~~L~-~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~-~~L~~l~  164 (207)
                      |++++| .++.++.  +..+++|+ .+++++|.++.++. ..+.. ++|+.|++++|. ++.. .+..+..+ ++|+.|+
T Consensus       135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEE
T ss_pred             EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccC-CHHHhhccccCCcEEE
Confidence            999999 8988753  77889999 99999999987655 44554 799999999995 8864 35677888 9999999


Q ss_pred             cCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        165 LSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       165 l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      +++|.+. .+|..      .+++|+.|+++..
T Consensus       212 l~~N~l~-~l~~~------~~~~L~~L~l~~~  236 (239)
T 2xwt_C          212 VSQTSVT-ALPSK------GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCCC-CCCCT------TCTTCSEEECTTC
T ss_pred             CCCCccc-cCChh------HhccCceeeccCc
Confidence            9999987 56653      5677777776653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.8e-17  Score=139.24  Aligned_cols=148  Identities=28%  Similarity=0.405  Sum_probs=133.4

Q ss_pred             CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233         20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~   99 (207)
                      ..++.++++.|.+..++.+..+++|+.|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|+|++|.+.
T Consensus        65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccC
Confidence            34567899999998777799999999999999999999999999999999999999998888999999999999999999


Q ss_pred             cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233        100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus       100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      .++.+..+++|+.|++++|.+.+.++   +..+++|+.|++++|.+++.   ..+..+++|+.|++++|++.+.
T Consensus       145 ~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          145 DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEEEECC
T ss_pred             CchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCcCcCC
Confidence            88888899999999999999987543   78899999999999999874   3478899999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.3e-17  Score=122.10  Aligned_cols=148  Identities=21%  Similarity=0.331  Sum_probs=127.6

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|+++.++  .+.++++|++|++++|.+..++.  +..+++|++|++++|.++.++.  +..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            4677999999987654  37899999999999999998854  7889999999999999976654  6889999999999


Q ss_pred             CCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233         95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus        95 ~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      +|.++.++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+..        .++.++.|+++.|.+.|
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence            999988753  6788999999999999988655 568889999999999997764        56789999999999999


Q ss_pred             chhhH
Q psy10233        173 KIKNY  177 (207)
Q Consensus       173 ~~~~~  177 (207)
                      .+|..
T Consensus       180 ~ip~~  184 (208)
T 2o6s_A          180 VVRNS  184 (208)
T ss_dssp             TBBCT
T ss_pred             eeecc
Confidence            99874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=4.4e-17  Score=130.14  Aligned_cols=100  Identities=21%  Similarity=0.290  Sum_probs=57.6

Q ss_pred             CeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecCCC
Q psy10233         23 DVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN   96 (207)
Q Consensus        23 ~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~   96 (207)
                      +.+++++|.++.+  ..+.++++|+.|++++|.+..++  .+..+++|++|++++|.++.++.  +..+++|++|++++|
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence            3455555555432  24555666666666666665552  25566666666666666654433  455666666666666


Q ss_pred             cccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233         97 FIEKIE--NLSCLPVLRTLHLSHNRLKT  122 (207)
Q Consensus        97 ~~~~~~--~~~~~~~L~~L~l~~n~i~~  122 (207)
                      .+..++  .+..+++|+.|++++|.++.
T Consensus       152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          152 NLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             ccCccChhhccCCCCCCEEECCCCcCCc
Confidence            665552  25556666666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=3.9e-17  Score=140.99  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=120.0

Q ss_pred             CCeEEeecCCCc--CccCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccc--cccCCccccCCcEEecCC
Q psy10233         22 NDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVK--VMENLSHMQLLDTINLSH   95 (207)
Q Consensus        22 ~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~L~~L~l~~   95 (207)
                      .+.++++.|.+.  .+..++++++|+.|++++|.+... | .++.+++|++|++++|.+.  .+..+..+++|+.|++++
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            445666666664  234567777777777777777643 3 3667777788888777774  223467778888888887


Q ss_pred             Ccccc-cc-----------------------------------------------------------------------C
Q psy10233         96 NFIEK-IE-----------------------------------------------------------------------N  103 (207)
Q Consensus        96 ~~~~~-~~-----------------------------------------------------------------------~  103 (207)
                      |.+.+ +|                                                                       .
T Consensus       548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence            76642 11                                                                       1


Q ss_pred             CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233        104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN  183 (207)
Q Consensus       104 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  183 (207)
                      +..+++|+.|++++|.+++. .+..++.++.|+.|++++|.+++. +|..++.+++|+.|++++|.+.|.+|..    +.
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~~----l~  701 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQA----MS  701 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCGG----GG
T ss_pred             hhccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCChH----Hh
Confidence            22345677888888888763 335678888888888888888865 6788888888888888888888888875    67


Q ss_pred             hCCcceeccCcc
Q psy10233        184 LCVNLRHLDDYP  195 (207)
Q Consensus       184 ~~~~L~~L~~~~  195 (207)
                      .++.|+.||+++
T Consensus       702 ~l~~L~~L~ls~  713 (768)
T 3rgz_A          702 ALTMLTEIDLSN  713 (768)
T ss_dssp             GCCCCSEEECCS
T ss_pred             CCCCCCEEECcC
Confidence            888888888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2.7e-17  Score=141.98  Aligned_cols=166  Identities=22%  Similarity=0.282  Sum_probs=99.1

Q ss_pred             HHhhhcCCccCCCCCCeEEeecCCCcC----------------------------ccCccCCCCCCEEEeecCCccC-c-
Q psy10233          8 KICKDNKLYLTPSLNDVLYLHFKGYTV----------------------------IENLEEYTGLKCLWLENNGISK-I-   57 (207)
Q Consensus         8 ~~c~~~~~~~~~~~~~~l~l~~~~~~~----------------------------~~~l~~l~~L~~L~l~~~~l~~-~-   57 (207)
                      ..|.|.|+.|+...+..++++.+++..                            ++.++++++|++|++++|.+.+ + 
T Consensus        38 ~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (768)
T 3rgz_A           38 NPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT  117 (768)
T ss_dssp             CGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG
T ss_pred             CCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC
Confidence            479999999974444456665555422                            1456777888888888887764 2 


Q ss_pred             c--CCccCCCCCEEEeecCccccc--cC-CccccCCcEEecCCCccccc---------------------------cCCC
Q psy10233         58 E--NLDAQTEMRSIYMHHNLVKVM--EN-LSHMQLLDTINLSHNFIEKI---------------------------ENLS  105 (207)
Q Consensus        58 ~--~~~~l~~L~~L~l~~n~~~~~--~~-~~~~~~L~~L~l~~~~~~~~---------------------------~~~~  105 (207)
                      +  .++.+++|++|++++|.+...  .. +..+++|++|++++|.+...                           ....
T Consensus       118 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  197 (768)
T 3rgz_A          118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS  197 (768)
T ss_dssp             GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCT
T ss_pred             ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcc
Confidence            2  466777777777777766422  11 24556666666666655432                           2223


Q ss_pred             CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      .+++|+.|++++|.+.+..+  .+..+++|++|++++|.+++. .+..++.+++|+.|++++|.+.+.+|.
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~  265 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPP  265 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCC--BCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred             cCCcCCEEECcCCcCCCCCc--ccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCc
Confidence            44555555555555544222  255666666666666666643 455666666666666666666554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=1.9e-18  Score=146.28  Aligned_cols=181  Identities=17%  Similarity=0.178  Sum_probs=136.3

Q ss_pred             HHhhh---cCCccCCC-CCCeEEeecCCCc--CccCccCCCCCCEEEeecCCc---------------------------
Q psy10233          8 KICKD---NKLYLTPS-LNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGI---------------------------   54 (207)
Q Consensus         8 ~~c~~---~~~~~~~~-~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l---------------------------   54 (207)
                      ..|.|   .|+.|+.. .+..++++.+++.  .+++++++++|+.|++++|.+                           
T Consensus        65 ~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  144 (636)
T 4eco_A           65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH  144 (636)
T ss_dssp             CGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTH
T ss_pred             CcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhh
Confidence            46889   99999765 4455778888874  567899999999999999854                           


Q ss_pred             ---------------------------------------------------cCcc-CCccCCCCCEEEeecCcccc----
Q psy10233         55 ---------------------------------------------------SKIE-NLDAQTEMRSIYMHHNLVKV----   78 (207)
Q Consensus        55 ---------------------------------------------------~~~~-~~~~l~~L~~L~l~~n~~~~----   78 (207)
                                                                         .++| .++.+++|++|++++|.++.    
T Consensus       145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~  224 (636)
T 4eco_A          145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC  224 (636)
T ss_dssp             HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred             HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence                                                               1233 36778899999999998866    


Q ss_pred             --------------cc-CCc--cccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCc-cCCccccccCCC------C
Q psy10233         79 --------------ME-NLS--HMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNR-LKTIEDIEHLKD------C  132 (207)
Q Consensus        79 --------------~~-~~~--~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~------~  132 (207)
                                    ++ .+.  .+++|++|++++|.+.. +| .+..+++|+.|++++|. +++...+..+..      +
T Consensus       225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l  304 (636)
T 4eco_A          225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG  304 (636)
T ss_dssp             SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred             ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence                          44 466  89999999999997654 45 57788999999999997 765111123333      3


Q ss_pred             CCccEEEccCCCCCChhhHH--HhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        133 PLLSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       133 ~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++|+.|++++|.++.  +|.  .++.+++|+.|++++|.+.|.+| .    +..+++|+.|+++.
T Consensus       305 ~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~  362 (636)
T 4eco_A          305 EKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAY  362 (636)
T ss_dssp             GTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEEECCS
T ss_pred             CCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCC
Confidence            788888998888884  565  78888888888888888887777 2    56677777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=7.8e-17  Score=135.58  Aligned_cols=149  Identities=20%  Similarity=0.223  Sum_probs=109.3

Q ss_pred             EEeecCCCcCccCccCC-CCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233         25 LYLHFKGYTVIENLEEY-TGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        25 l~l~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~   99 (207)
                      .+.++.+++.+|.  .+ +++++|++++|.|..++  .|..+++|++|++++|.++.++  .|..+++|++|+|++|.++
T Consensus        36 ~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           36 YQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            3455555554431  23 36788888888888774  3778888888888888886653  3778888888888888887


Q ss_pred             ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233        100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      .+|  .+..+++|+.|++++|.+++++. ..++.+++|+.|++++|.++....+..++.+++|+.|++++|.+.+..+.
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            774  36778888888888888877654 45778888888888888887655567777788888888888887754444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.72  E-value=4.3e-17  Score=128.61  Aligned_cols=151  Identities=18%  Similarity=0.206  Sum_probs=126.7

Q ss_pred             CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC---CccccCCcEEe
Q psy10233         20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTIN   92 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~   92 (207)
                      ...+.++++.|.++.+  ..+.++++|++|++++|.+..++.  +..+++|++|++++|.++.++.   +..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            3456788999988754  458999999999999999998854  7889999999999999977654   78899999999


Q ss_pred             cCCC-cccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233         93 LSHN-FIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus        93 l~~~-~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      +++| .++.++  .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+... ....+..+++|+.|++++|.
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCc
Confidence            9999 466663  57788999999999999987533 6788899999999999999874 24455678999999999999


Q ss_pred             ccc
Q psy10233        170 CVG  172 (207)
Q Consensus       170 ~~~  172 (207)
                      +.+
T Consensus       234 l~~  236 (353)
T 2z80_A          234 LDT  236 (353)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.1e-16  Score=125.20  Aligned_cols=145  Identities=22%  Similarity=0.306  Sum_probs=66.5

Q ss_pred             eEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--Cc-cCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcc
Q psy10233         24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LD-AQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~   98 (207)
                      .++++.++++.++. .-.+.++.|++++|.+..++.  +. .+++|++|++++|.++.++  .|..+++|++|++++|.+
T Consensus        22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            34444444443331 011234555555555554422  33 4555555555555554332  244555555555555555


Q ss_pred             cccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHh---ccCCCCcEEEcCCCccc
Q psy10233         99 EKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF---GAMPELRVLTLSHNPCV  171 (207)
Q Consensus        99 ~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~l~l~~n~~~  171 (207)
                      +.++  .+..+++|+.|++++|.++.+.. ..+..+++|+.|++++|.++..+ ...+   ..+++|+.|++++|.+.
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCC
Confidence            4442  24444555555555555544322 34445555555555555555421 2222   23455555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=1.4e-17  Score=129.63  Aligned_cols=147  Identities=18%  Similarity=0.322  Sum_probs=112.9

Q ss_pred             CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CC-ccccCCcEEecCCCccccccCCCCCCCCcEEE
Q psy10233         40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NL-SHMQLLDTINLSHNFIEKIENLSCLPVLRTLH  114 (207)
Q Consensus        40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  114 (207)
                      .+++|+.|++++|.+..++  .+..+++|++|++++|.++...  .+ ..+++|++|++++|.++.++....+++|+.|+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~  197 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence            3567888888888887763  4777888999999988886542  33 36788999999999888877666688899999


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc-cchhhHHHHHHHhCCcceeccC
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV-GKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      +++|.+++++.  .+..+++|+.|++++|.++.  ++..+..+++|+.|++++|++. +.++.    .+..++.|+.++.
T Consensus       198 Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~----~~~~~~~L~~l~l  269 (317)
T 3o53_A          198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAK  269 (317)
T ss_dssp             CCSSCCCEECG--GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHH----HHHTCHHHHHHHH
T ss_pred             CCCCcCCcchh--hhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHH----HHhccccceEEEC
Confidence            99998887655  47778889999999998886  5666788889999999999887 33333    3666777776655


Q ss_pred             c
Q psy10233        194 Y  194 (207)
Q Consensus       194 ~  194 (207)
                      .
T Consensus       270 ~  270 (317)
T 3o53_A          270 Q  270 (317)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=1.1e-16  Score=130.04  Aligned_cols=129  Identities=13%  Similarity=0.227  Sum_probs=100.9

Q ss_pred             CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccC-c--cCCccCCCCCEEEeecCccccc--cCCccccCCcEEe
Q psy10233         20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISK-I--ENLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN   92 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~   92 (207)
                      ...+.+++++|.++.+  ..++++++|+.|++++|.+.. +  ..+..+++|++|++++|.+...  ..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            3467789999988653  568899999999999998863 3  2478889999999999988654  3578889999999


Q ss_pred             cCCCccccc--cC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233         93 LSHNFIEKI--EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus        93 l~~~~~~~~--~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~  148 (207)
                      +++|.+...  +.  +..+++|+.|++++|.+++..+...+..+++|+.|++++|.+.+.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            999988752  22  777888999999999888764433477788888888888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=1.4e-16  Score=127.25  Aligned_cols=166  Identities=22%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|.++.+  ..++++++|+.|++++|.+..++.  +..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            445566666666533  235666677777777776666543  456666666666666664432  25555666666666


Q ss_pred             CCccccc-------------------------------------------------------------cCCCCCCCCcEE
Q psy10233         95 HNFIEKI-------------------------------------------------------------ENLSCLPVLRTL  113 (207)
Q Consensus        95 ~~~~~~~-------------------------------------------------------------~~~~~~~~L~~L  113 (207)
                      +|.++.+                                                             +.+..+++|+.|
T Consensus       174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L  253 (390)
T 3o6n_A          174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV  253 (390)
T ss_dssp             SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEE
Confidence            5554332                                                             112233455555


Q ss_pred             EcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233        114 HLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       114 ~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      ++++|.+++..+ ..+..+++|+.|++++|.+++  ++..+..+++|+.|++++|.+. .+|..    +..+++|+.|++
T Consensus       254 ~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~----~~~l~~L~~L~L  325 (390)
T 3o6n_A          254 DLSYNELEKIMY-HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERN----QPQFDRLENLYL  325 (390)
T ss_dssp             ECCSSCCCEEES-GGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGG----HHHHTTCSEEEC
T ss_pred             ECCCCcCCCcCh-hHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcce-ecCcc----ccccCcCCEEEC
Confidence            555555544322 345555566666666665554  2333345566666666666655 33432    234455555544


Q ss_pred             c
Q psy10233        194 Y  194 (207)
Q Consensus       194 ~  194 (207)
                      .
T Consensus       326 ~  326 (390)
T 3o6n_A          326 D  326 (390)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=1.4e-16  Score=134.04  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=34.4

Q ss_pred             CeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCC
Q psy10233         23 DVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHN   96 (207)
Q Consensus        23 ~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~   96 (207)
                      +.+++++|.+..++  .++++++|+.|++++|.+..++.  +..+++|++|++++|.+..++  .+..+++|+.|++++|
T Consensus       102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            34444444443221  23445555555555555544432  344555555555555443332  2444444444444444


Q ss_pred             cc
Q psy10233         97 FI   98 (207)
Q Consensus        97 ~~   98 (207)
                      .+
T Consensus       182 ~l  183 (597)
T 3oja_B          182 RL  183 (597)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=2.7e-16  Score=122.93  Aligned_cols=167  Identities=22%  Similarity=0.280  Sum_probs=94.7

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccC---------------
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMEN---------------   81 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~---------------   81 (207)
                      ..+.+++++|+++.++  .++++++|+.|++++|.+..+ + .+..+++|++|++++|.++.++.               
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE  132 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence            4556788888876553  578888888888888888776 3 47777888888888776653321               


Q ss_pred             --------CccccCCcEEecCCCcccc--c--cCCCCCCCCcEEE---------------------cCCCccCCcccccc
Q psy10233         82 --------LSHMQLLDTINLSHNFIEK--I--ENLSCLPVLRTLH---------------------LSHNRLKTIEDIEH  128 (207)
Q Consensus        82 --------~~~~~~L~~L~l~~~~~~~--~--~~~~~~~~L~~L~---------------------l~~n~i~~~~~~~~  128 (207)
                              +..+++|+.|++++|.+..  .  ..+..+++|+.|+                     +++|.+++... ..
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~-~~  211 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-AS  211 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT-GG
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH-HH
Confidence                    2334445555555544431  1  1122333344444                     44443333211 34


Q ss_pred             CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+. .+|..    +..+++|+.|+++
T Consensus       212 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~----l~~l~~L~~L~l~  271 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGG----LADHKYIQVVYLH  271 (330)
T ss_dssp             GTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTT----TTTCSSCCEEECC
T ss_pred             hcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc-cCChh----hccCCCcCEEECC
Confidence            45555666666666665543 2334555666666666666655 44443    4455666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=4.5e-17  Score=137.00  Aligned_cols=161  Identities=20%  Similarity=0.292  Sum_probs=130.1

Q ss_pred             hhhcCCccCCC----CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233         10 CKDNKLYLTPS----LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME-   80 (207)
Q Consensus        10 c~~~~~~~~~~----~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~-   80 (207)
                      |...+.+..|.    .++.+++++|.++.++  ++.++++|++|++++|.+..++  .|..+++|++|++++|.++.++ 
T Consensus        38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            55556665553    5678999999998664  6899999999999999999884  3899999999999999997764 


Q ss_pred             -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233         81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM  157 (207)
Q Consensus        81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  157 (207)
                       .|..+++|++|++++|.++.++  .+..+++|+.|++++|.++.+..+..+..+++|++|++++|.++... +..+..+
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L  196 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVL  196 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccch
Confidence             3789999999999999998885  47889999999999999988666567888999999999999998742 3333322


Q ss_pred             C----CCcEEEcCCCccc
Q psy10233        158 P----ELRVLTLSHNPCV  171 (207)
Q Consensus       158 ~----~L~~l~l~~n~~~  171 (207)
                      .    ....++++.|.+.
T Consensus       197 ~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             HTCTTCCCEEECTTCCCC
T ss_pred             hhhhhhhhhhhcccCccc
Confidence            2    2345777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=1.4e-16  Score=121.48  Aligned_cols=149  Identities=21%  Similarity=0.233  Sum_probs=122.9

Q ss_pred             EEeecCCCcCcc-CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233         25 LYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        25 l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~   99 (207)
                      +.....+++.++ .+.  ++++.|++++|.+..++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.+.
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            344455554443 332  57999999999999874  5889999999999999997664  4888999999999999998


Q ss_pred             ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233        100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      .++  .+..+++|+.|++++|.+.+.+. ..+..+++|+.|++++|.++...++..++.+++|+.|++++|.+.+..+.
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            774  47889999999999999988655 46888999999999999998755678889999999999999998754443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=4.5e-17  Score=135.76  Aligned_cols=180  Identities=19%  Similarity=0.254  Sum_probs=130.3

Q ss_pred             hhhcCCccCC----CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233         10 CKDNKLYLTP----SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME-   80 (207)
Q Consensus        10 c~~~~~~~~~----~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~-   80 (207)
                      |...+.+..|    ...+.+++++|.++.+  ..+.++++|++|++++|.+..++  .+..+++|++|++++|.++..+ 
T Consensus        14 c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             CCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             eCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            4444444433    3456788888888654  36788888999999988888764  3788888999999988886553 


Q ss_pred             -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233         81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM  157 (207)
Q Consensus        81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  157 (207)
                       .+..+++|++|++++|.+..++  .+..+++|+.|++++|.++++..+..+..+++|++|++++|.++.. .+..++.+
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l  172 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL  172 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHH
T ss_pred             hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-cHHHccch
Confidence             4788888999999988888775  3778888999999998887754445778888899999999888764 34555566


Q ss_pred             CCC----cEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        158 PEL----RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       158 ~~L----~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++|    ..+++++|.+.+..+..    +..+ +|+.|++..
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~----~~~~-~L~~L~l~~  209 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGA----FKEI-RLHKLTLRN  209 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTT----TTTC-EEEEEEEES
T ss_pred             hccchhhhhcccCCCCceecCHHH----hccC-cceeEeccc
Confidence            666    78888888877544432    2222 566665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=2.1e-16  Score=132.80  Aligned_cols=171  Identities=20%  Similarity=0.177  Sum_probs=138.2

Q ss_pred             CCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEe
Q psy10233         19 PSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN   92 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~   92 (207)
                      |...+.+++++|.++.+  ..++++++|++|++++|.+... + .|..+++|++|++++|.+...  ..+..+++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            34667899999998754  4789999999999999999876 3 488999999999999988655  3588999999999


Q ss_pred             cCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc--EEEcCCC
Q psy10233         93 LSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR--VLTLSHN  168 (207)
Q Consensus        93 l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~--~l~l~~n  168 (207)
                      +++|.+..+  ..+..+++|+.|++++|.+++++.+ .+..+++|+.|++++|.++.. .+..++.+++|+  .+++++|
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEECTTC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEecCCC
Confidence            999999886  3578889999999999999886543 344489999999999999875 477788899999  8999999


Q ss_pred             ccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        169 PCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      .+.+..|..     ....+|+.|++...
T Consensus       190 ~l~~~~~~~-----~~~~~L~~L~l~~~  212 (606)
T 3t6q_A          190 DIAGIEPGA-----FDSAVFQSLNFGGT  212 (606)
T ss_dssp             CCCEECTTT-----TTTCEEEEEECTTC
T ss_pred             ccCccChhH-----hhhccccccccCCc
Confidence            988665542     23456777776554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=2.2e-16  Score=134.44  Aligned_cols=168  Identities=24%  Similarity=0.220  Sum_probs=134.1

Q ss_pred             CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc-C-CccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233         20 SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE-N-LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL   93 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~-~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l   93 (207)
                      ..++.+++++|+++.++  .++++++|++|++++|.+...+ . +..+++|++|++++|.++.++.  +..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            35677899999987553  5889999999999999998873 3 7889999999999999877653  889999999999


Q ss_pred             CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhc--cCCCCcEEEcCCCc
Q psy10233         94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG--AMPELRVLTLSHNP  169 (207)
Q Consensus        94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~l~l~~n~  169 (207)
                      ++|.+..++  .+..+++|+.|++++|.+++.+. ..+..+++|++|++++|.+++.. +..+.  .+++|+.|++++|.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCc
Confidence            999998774  47888999999999999887544 56788999999999999998753 44433  56899999999998


Q ss_pred             cccchhhHHHHHHHhCCcceeccC
Q psy10233        170 CVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      +.+..+..    +..+.+|+.+++
T Consensus       183 l~~~~~~~----~~~l~~L~~L~l  202 (680)
T 1ziw_A          183 IKEFSPGC----FHAIGRLFGLFL  202 (680)
T ss_dssp             CCCBCTTG----GGGSSEECEEEC
T ss_pred             ccccChhh----hhhhhhhhhhhc
Confidence            87655543    445555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=4.9e-17  Score=136.69  Aligned_cols=166  Identities=16%  Similarity=0.178  Sum_probs=106.9

Q ss_pred             CeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCc---cCCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCC
Q psy10233         23 DVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHN   96 (207)
Q Consensus        23 ~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~   96 (207)
                      +.++++.|.+..+ ..+..+++|+.|++++|.+...   ..+..+++|++|++++|.+...  ..+..+++|++|++++|
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            3444445544322 3455666666666666666554   2355667777777777766432  23666777777777777


Q ss_pred             cccc--cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233         97 FIEK--IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus        97 ~~~~--~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      .+..  .| .+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+. .
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~-~  535 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE-T  535 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC-C
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc-c
Confidence            7664  23 36667777777777777766433 4567777788888888877765 3666777778888888888776 5


Q ss_pred             hhhHHHHHHHhCC-cceeccCcc
Q psy10233        174 IKNYRRMFINLCV-NLRHLDDYP  195 (207)
Q Consensus       174 ~~~~~~~~~~~~~-~L~~L~~~~  195 (207)
                      +|..    +..++ +|+.|++.+
T Consensus       536 ~p~~----~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          536 SKGI----LQHFPKSLAFFNLTN  554 (606)
T ss_dssp             EESC----GGGSCTTCCEEECCS
T ss_pred             cCHh----HhhhcccCcEEEccC
Confidence            5653    45554 477776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2.4e-17  Score=128.34  Aligned_cols=167  Identities=20%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC----------------
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL----------------   82 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------   82 (207)
                      ..+.+++++|.++.+  ..+.++++|+.|++++|.+...+.+..+++|++|++++|.++.++..                
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~  114 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence            466788888888654  36788899999999999887765577888888888888877543311                


Q ss_pred             --ccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233         83 --SHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus        83 --~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                        ..+++|++|++++|.++.++  .+..+++|+.|++++|.+++.........+++|+.|++++|.++..  +. ...++
T Consensus       115 ~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~-~~~l~  191 (317)
T 3o53_A          115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-QVVFA  191 (317)
T ss_dssp             EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-CCCCT
T ss_pred             CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--cc-ccccc
Confidence              12345566666666665542  3445566777777777666544322334566677777777776653  22 22467


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +|+.|++++|.+.+ +|..    +..+++|+.|+++.
T Consensus       192 ~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~L~~  223 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRN  223 (317)
T ss_dssp             TCCEEECCSSCCCE-ECGG----GGGGTTCSEEECTT
T ss_pred             cCCEEECCCCcCCc-chhh----hcccCcccEEECcC
Confidence            77777777777763 3332    55677777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.4e-16  Score=110.68  Aligned_cols=130  Identities=24%  Similarity=0.360  Sum_probs=99.0

Q ss_pred             CCCCCEEEeecCccc--cccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEE
Q psy10233         63 QTEMRSIYMHHNLVK--VMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD  139 (207)
Q Consensus        63 l~~L~~L~l~~n~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~  139 (207)
                      .++++.|++++|.++  .++. +..+++|++|++++|.++.++.+..+++|+.|++++|.+++. .+..+..+++|+.|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence            456777777777776  4433 567778888888888777766677788888888888888773 223556678899999


Q ss_pred             ccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       140 l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +++|.+++...+..++.+++|+.|++++|++.+ ++......+..+++|+.||++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence            999999885445778899999999999999874 454444468899999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=4.4e-17  Score=133.93  Aligned_cols=167  Identities=20%  Similarity=0.180  Sum_probs=107.8

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC----------------
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL----------------   82 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------   82 (207)
                      .+..+++++|++..+  ..++++++|+.|++++|.+...+.+..+++|++|++++|.++.++..                
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~  114 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence            466789999988654  46889999999999999988765588888999999998877654321                


Q ss_pred             --ccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233         83 --SHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus        83 --~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                        ..+++|+.|++++|.++.+ | .+..+++|+.|++++|.+++..+......+++|+.|++++|.+++.  +. ...++
T Consensus       115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~-~~~l~  191 (487)
T 3oja_A          115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-QVVFA  191 (487)
T ss_dssp             EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-CCCCT
T ss_pred             CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cc-cccCC
Confidence              1234455555555555544 2 3445566666666666665543322223556666666666666653  22 22466


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +|+.|++++|.+.+..+.     +..+++|+.|+++.
T Consensus       192 ~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          192 KLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN  223 (487)
T ss_dssp             TCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT
T ss_pred             CCCEEECCCCCCCCCCHh-----HcCCCCccEEEecC
Confidence            777777777777643332     45667777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=2.8e-16  Score=132.15  Aligned_cols=101  Identities=21%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             CCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCC
Q psy10233         22 NDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSH   95 (207)
Q Consensus        22 ~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~   95 (207)
                      ...++++.|.++.+  ..++.+++|+.|++++|.+..++.  ++.+++|++|++++|.++.++.  +..+++|++|++++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            34556666665433  256667777777777777766532  5667777777777777765543  46677777777777


Q ss_pred             Ccccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233         96 NFIEKIE--NLSCLPVLRTLHLSHNRLKT  122 (207)
Q Consensus        96 ~~~~~~~--~~~~~~~L~~L~l~~n~i~~  122 (207)
                      |.+..++  .+..+++|+.|++++|.+++
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            7776653  36666777777777776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.70  E-value=2.2e-16  Score=123.37  Aligned_cols=107  Identities=20%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             cCCcEEecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233         86 QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL  163 (207)
Q Consensus        86 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l  163 (207)
                      ++|++|++++|.++.+  ..+..+++|+.|++++|.+++.+. ..+..+++|+.|++++|.++.  ++..+..+++|+.|
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L  268 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVV  268 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEE
Confidence            4566666666666555  247778999999999999988544 567888999999999999986  57778899999999


Q ss_pred             EcCCCccccchhhHHHH--HHHhCCcceeccCcc
Q psy10233        164 TLSHNPCVGKIKNYRRM--FINLCVNLRHLDDYP  195 (207)
Q Consensus       164 ~l~~n~~~~~~~~~~~~--~~~~~~~L~~L~~~~  195 (207)
                      ++++|.+.+..+.....  .......++.|++..
T Consensus       269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             ECCCCcCCccChhhcCCcccccccccccceEeec
Confidence            99999987533322100  011235666666643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=3.3e-16  Score=127.73  Aligned_cols=161  Identities=22%  Similarity=0.260  Sum_probs=112.1

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.++++.++++.+++++.+++|+.|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++|.++.
T Consensus        43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe
Confidence            45678888888877778888889999999998888875 777888888888888887664 7778888888888888877


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCcccc------------------ccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcE
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDI------------------EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV  162 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~------------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  162 (207)
                      ++ +..+++|+.|++++|.+++++..                  ..+..+++|+.|++++|.+++.  +  +..+++|+.
T Consensus       121 l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~  195 (457)
T 3bz5_A          121 LD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNR  195 (457)
T ss_dssp             CC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCE
T ss_pred             ec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c--cccCCCCCE
Confidence            64 66777888888888877664210                  0133445556666666666552  2  455666666


Q ss_pred             EEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       163 l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      |++++|.+.+. +      +..+++|+.|+++.
T Consensus       196 L~l~~N~l~~~-~------l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          196 LNCDTNNITKL-D------LNQNIQLTFLDCSS  221 (457)
T ss_dssp             EECCSSCCSCC-C------CTTCTTCSEEECCS
T ss_pred             EECcCCcCCee-c------cccCCCCCEEECcC
Confidence            66666666542 1      44566666666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=4e-17  Score=126.79  Aligned_cols=151  Identities=20%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             CCCeEEeecCCCc-C-ccCc--cCCCCCCEEEeecCCccCccC-CccC-----CCCCEEEeecCcccccc--CCccccCC
Q psy10233         21 LNDVLYLHFKGYT-V-IENL--EEYTGLKCLWLENNGISKIEN-LDAQ-----TEMRSIYMHHNLVKVME--NLSHMQLL   88 (207)
Q Consensus        21 ~~~~l~l~~~~~~-~-~~~l--~~l~~L~~L~l~~~~l~~~~~-~~~l-----~~L~~L~l~~n~~~~~~--~~~~~~~L   88 (207)
                      ..+.++++.|.++ . +..+  ..+++|+.|++++|.+...+. +..+     ++|++|++++|.+...+  .+..+++|
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            4455666666664 2 2333  566666666666666665532 3333     55666666666554432  35555566


Q ss_pred             cEEecCCCccccc----cCC--CCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233         89 DTINLSHNFIEKI----ENL--SCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL  160 (207)
Q Consensus        89 ~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  160 (207)
                      ++|++++|.+...    +.+  ..+++|+.|++++|.+++.+..  ..+..+++|+.|++++|.+++......+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            6666665553221    111  4445555555555555432110  1122334444444444444432101222233444


Q ss_pred             cEEEcCCCccc
Q psy10233        161 RVLTLSHNPCV  171 (207)
Q Consensus       161 ~~l~l~~n~~~  171 (207)
                      +.|++++|.+.
T Consensus       256 ~~L~Ls~N~l~  266 (312)
T 1wwl_A          256 NSLNLSFTGLK  266 (312)
T ss_dssp             CEEECTTSCCS
T ss_pred             CEEECCCCccC
Confidence            44444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=5.3e-17  Score=115.01  Aligned_cols=131  Identities=26%  Similarity=0.292  Sum_probs=78.9

Q ss_pred             CCCCCEEEeecCCcc--CccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc-ccCC-CCCCCCcEEEc
Q psy10233         41 YTGLKCLWLENNGIS--KIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK-IENL-SCLPVLRTLHL  115 (207)
Q Consensus        41 l~~L~~L~l~~~~l~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l  115 (207)
                      .++|+.|++++|.+.  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.+.. +|.. ..+++|+.|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            356777777777776  4543 46667777777777766655556666667777777666655 3332 23566666666


Q ss_pred             CCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcCCCccc
Q psy10233        116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ++|.+++++....+..+++|+.|++++|.++....  ...+..+++|+.|++++|...
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666655433455556666666666666655311  125556666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=3e-17  Score=117.24  Aligned_cols=134  Identities=23%  Similarity=0.309  Sum_probs=114.4

Q ss_pred             cCccCCCCCCEEEeecCCccCccCCccCC-CCCEEEeecCccccccCCccccCCcEEecCCCccccccC--CCCCCCCcE
Q psy10233         36 ENLEEYTGLKCLWLENNGISKIENLDAQT-EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRT  112 (207)
Q Consensus        36 ~~l~~l~~L~~L~l~~~~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~  112 (207)
                      +.+.++.+|+.|++++|.+..++.+..+. +|++|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|+.
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            44567789999999999999888776665 999999999999888888899999999999999988753  367899999


Q ss_pred             EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH----HhccCCCCcEEEcCCCccc
Q psy10233        113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE----VFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~l~l~~n~~~  171 (207)
                      |++++|.++.++....+..+++|+.|++++|.++..  +.    .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK--KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc--HhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998876545788899999999999999763  44    4789999999999999854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=9.9e-17  Score=133.27  Aligned_cols=169  Identities=17%  Similarity=0.245  Sum_probs=133.1

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~   94 (207)
                      ..+.+++++|.++.+  ..++++++|++|++++|.+...+  .+..+++|++|++++|.++..+.  ++.+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            566788999988654  56889999999999999998874  48889999999999998876543  7889999999999


Q ss_pred             CCccccc---cCCCCCCCCcEEEcCCCc-cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233         95 HNFIEKI---ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC  170 (207)
Q Consensus        95 ~~~~~~~---~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~  170 (207)
                      +|.+..+   +.+..+++|+.|++++|. +..++. ..+..+++|++|++++|.+++. .+..++.+++|+.|+++.|..
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBS
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcc
Confidence            9988754   357788999999999997 444332 5678889999999999988875 466777888888888888876


Q ss_pred             ccchhhHHHHHHHhCCcceeccCcc
Q psy10233        171 VGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       171 ~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      . .++..   +...+++|++|+++.
T Consensus       185 ~-~~~~~---~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          185 A-FLLEI---FADILSSVRYLELRD  205 (549)
T ss_dssp             T-THHHH---HHHSTTTBSEEEEES
T ss_pred             c-ccchh---hHhhcccccEEEccC
Confidence            4 45543   345677887777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=2.6e-16  Score=124.61  Aligned_cols=154  Identities=22%  Similarity=0.329  Sum_probs=128.2

Q ss_pred             CCCCeEEeecCCCcCcc--Ccc-CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEe
Q psy10233         20 SLNDVLYLHFKGYTVIE--NLE-EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTIN   92 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~~~--~l~-~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~   92 (207)
                      ...+.+++++|.++.++  .+. ++++|+.|++++|.+..++  .|..+++|++|++++|.++.++.  |..+++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            35678999999997653  355 8999999999999999875  48899999999999999977643  78999999999


Q ss_pred             cCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccC---CCCCCccEEEccCCCCCChhhHHHhccCCC--CcEEEc
Q psy10233         93 LSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHL---KDCPLLSIVDVSHNQIEDEEVIEVFGAMPE--LRVLTL  165 (207)
Q Consensus        93 l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~--L~~l~l  165 (207)
                      +++|.+..++  .+..+++|+.|++++|.++.++. ..+   ..+++|+.|++++|.++... +..+..++.  ++.|++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEEC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEEe
Confidence            9999998773  58889999999999999998765 344   56899999999999999863 566777776  488999


Q ss_pred             CCCccccchh
Q psy10233        166 SHNPCVGKIK  175 (207)
Q Consensus       166 ~~n~~~~~~~  175 (207)
                      ++|++.++..
T Consensus       197 ~~N~~~C~C~  206 (361)
T 2xot_A          197 HNNPLECDCK  206 (361)
T ss_dssp             CSSCEECCHH
T ss_pred             cCCCccCCcC
Confidence            9999986543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=4.2e-16  Score=126.69  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=17.3

Q ss_pred             CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred             hcCcccCCEEECCCCccccc-ChhhccccccccEEECCCCccc
Confidence            33344444444444444332 1333344444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=2.8e-16  Score=116.23  Aligned_cols=143  Identities=20%  Similarity=0.270  Sum_probs=122.2

Q ss_pred             CEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCc
Q psy10233         45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNR  119 (207)
Q Consensus        45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~  119 (207)
                      +.++++++.+..+|. +.  ++++.|++++|.++.++  .+..+++|++|++++|.++.+ + .+..+++|+.|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            578999999988875 32  68999999999998765  588899999999999999887 3 58889999999999999


Q ss_pred             cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        120 LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++.++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+..+.    .+..+++|+.|++..
T Consensus        92 l~~l~~-~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           92 ITELPK-SLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG----TFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred             CCccCH-hHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH----HHhCCCCCCEEEeCC
Confidence            998755 5678899999999999999986 467888999999999999999865544    366789999888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.5e-16  Score=116.44  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=122.7

Q ss_pred             CCEEEeecCCccCccCCccCCCCCEEEeecCcccccc---CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCC
Q psy10233         44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME---NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHN  118 (207)
Q Consensus        44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n  118 (207)
                      -+.+++++|.+..+|.. -...+++|++++|.++.++   .+..+++|++|++++|.++.++  .+..+++|+.|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            35899999999988751 1345789999999997763   2788999999999999998874  5888999999999999


Q ss_pred             ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+..|..    +..+++|+.|++..
T Consensus        92 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~  162 (220)
T 2v70_A           92 RLENVQH-KMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGA----FDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCCCCCG-GGGTTCSSCCEEECTTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTT----TTTCTTCCEEECCS
T ss_pred             ccCccCH-hHhcCCcCCCEEECCCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHH----hcCCCCCCEEEecC
Confidence            9988655 5688999999999999999985 4677889999999999999998766654    67899999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.2e-16  Score=134.19  Aligned_cols=150  Identities=18%  Similarity=0.260  Sum_probs=91.4

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEecC
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~   94 (207)
                      .++.+++++|.++.++  .+.++++|++|++++|.+..+ + .|..+++|++|++++|.++..  ..+..+++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            4455667777665432  466777777777777776665 2 366677777777777766544  236667777777777


Q ss_pred             CCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC----CcEEEcCCC
Q psy10233         95 HNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN  168 (207)
Q Consensus        95 ~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----L~~l~l~~n  168 (207)
                      +|.+..++  .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++. .+..++.+++    +..+++++|
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTC
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCC
Confidence            77766553  3666677777777777766533334566677777777777766653 1222322222    224555555


Q ss_pred             ccc
Q psy10233        169 PCV  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       192 ~l~  194 (606)
T 3vq2_A          192 PID  194 (606)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=6.4e-17  Score=134.43  Aligned_cols=165  Identities=17%  Similarity=0.186  Sum_probs=135.8

Q ss_pred             EeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc
Q psy10233         26 YLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        26 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      +.+.++++.++. .-.+++++|++++|.+...+  .+..+++|++|++++|.++..+  .+..+++|++|++++|.+..+
T Consensus        11 ~~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           11 DGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             ECTTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             ECCCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            555667765543 12378999999999998873  4899999999999999997664  488999999999999999887


Q ss_pred             c--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233        102 E--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR  179 (207)
Q Consensus       102 ~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  179 (207)
                      +  .+..+++|+.|++++|.+++.+.+..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.+.+..|..  
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--  167 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--  167 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh--
Confidence            4  388899999999999999876555678999999999999998443322457789999999999999998877764  


Q ss_pred             HHHHhCCcceeccCcc
Q psy10233        180 MFINLCVNLRHLDDYP  195 (207)
Q Consensus       180 ~~~~~~~~L~~L~~~~  195 (207)
                        +..+++|+.|++..
T Consensus       168 --l~~l~~L~~L~l~~  181 (549)
T 2z81_A          168 --LKSIRDIHHLTLHL  181 (549)
T ss_dssp             --TTTCSEEEEEEEEC
T ss_pred             --hhccccCceEeccc
Confidence              67889999988754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=3.6e-16  Score=122.36  Aligned_cols=166  Identities=22%  Similarity=0.255  Sum_probs=105.3

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN   96 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~   96 (207)
                      ..+.++++.|.++.+  ..++++++|+.|++++|.+..++.... ++|++|++++|.++.++.  +..+++|+.|++++|
T Consensus        79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A           79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred             CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence            455678888887643  567888888888888888877654211 667777777777655432  566666777777666


Q ss_pred             ccccc---c-CCCCC--------------------CCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH
Q psy10233         97 FIEKI---E-NLSCL--------------------PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE  152 (207)
Q Consensus        97 ~~~~~---~-~~~~~--------------------~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  152 (207)
                      .++..   + .+..+                    ++|+.|++++|.+++.+. ..+..+++|+.|++++|.+++. .+.
T Consensus       158 ~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~-~~~  235 (332)
T 2ft3_A          158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMI-ENG  235 (332)
T ss_dssp             CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCC-CTT
T ss_pred             ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcC-Chh
Confidence            65421   1 11111                    355556666666655432 4566667777777777777764 244


Q ss_pred             HhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       153 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      .+..+++|+.|++++|.+. .+|..    +..+++|+.|+++
T Consensus       236 ~~~~l~~L~~L~L~~N~l~-~lp~~----l~~l~~L~~L~l~  272 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKLS-RVPAG----LPDLKLLQVVYLH  272 (332)
T ss_dssp             GGGGCTTCCEEECCSSCCC-BCCTT----GGGCTTCCEEECC
T ss_pred             HhhCCCCCCEEECCCCcCe-ecChh----hhcCccCCEEECC
Confidence            5667777777777777766 55553    4567777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=2.7e-16  Score=123.06  Aligned_cols=169  Identities=21%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCC
Q psy10233         21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN   96 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~   96 (207)
                      ..+.+++++|.++.+  ..++++++|+.|++++|.+..+ + .+..+++|++|++++|.++.++.-. .++|++|++++|
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n  133 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDN  133 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSS
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCC
Confidence            345566666666543  3467777777777777777765 2 3667777777777777776554311 167777777777


Q ss_pred             ccccccC--CCCCCCCcEEEcCCCccCCccc-cccCCCC--------------------CCccEEEccCCCCCChhhHHH
Q psy10233         97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIED-IEHLKDC--------------------PLLSIVDVSHNQIEDEEVIEV  153 (207)
Q Consensus        97 ~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~~--------------------~~L~~L~l~~n~l~~~~~~~~  153 (207)
                      .+..++.  +..+++|+.|++++|.++..+. +..+..+                    ++|+.|++++|.+++. .+..
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~  212 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI-ELED  212 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC-CTTS
T ss_pred             ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc-CHHH
Confidence            7776642  6677788888888887753111 1122221                    3566666666666654 2455


Q ss_pred             hccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        154 FGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       154 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +..+++|+.|++++|.+.+..+..    +..+++|+.|+++.
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDN  250 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCC
Confidence            667778888888888777544433    56778888777754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=9.7e-16  Score=124.98  Aligned_cols=139  Identities=20%  Similarity=0.287  Sum_probs=69.8

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      .+.++++.|.++.++ ++.+++|+.|++++|.+..++ ++.+++|++|++++|.++.++ +..+++|++|++++|.++.+
T Consensus        66 L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A           66 LTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             CSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC
T ss_pred             CCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee
Confidence            445666666665543 555666666666666555543 455555555555555554432 44444444444444444322


Q ss_pred             c---------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233        102 E---------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL  160 (207)
Q Consensus       102 ~---------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  160 (207)
                      +                     .+..+++|+.|++++|.+++++    +..+++|+.|++++|.+++.    .++.+++|
T Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~----~l~~l~~L  214 (457)
T 3bz5_A          143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL----DLNQNIQL  214 (457)
T ss_dssp             CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC----CCTTCTTC
T ss_pred             ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee----ccccCCCC
Confidence            1                     2334455556666666555532    34444555555555555442    13444455


Q ss_pred             cEEEcCCCccc
Q psy10233        161 RVLTLSHNPCV  171 (207)
Q Consensus       161 ~~l~l~~n~~~  171 (207)
                      +.|++++|.+.
T Consensus       215 ~~L~Ls~N~l~  225 (457)
T 3bz5_A          215 TFLDCSSNKLT  225 (457)
T ss_dssp             SEEECCSSCCS
T ss_pred             CEEECcCCccc
Confidence            55555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.4e-16  Score=112.88  Aligned_cols=137  Identities=23%  Similarity=0.304  Sum_probs=114.6

Q ss_pred             cCCCCCEEEeecCccc--cccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         62 AQTEMRSIYMHHNLVK--VMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        62 ~l~~L~~L~l~~n~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      ..++|++|++++|.++  .++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++. .+..+..+++|+.|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            3478999999999997  5554 588999999999999998887788899999999999999884 22356668999999


Q ss_pred             EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233        139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD  200 (207)
Q Consensus       139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~  200 (207)
                      ++++|.+++...+..+..+++|+.|++++|++. .++......+..+++|++|++..+...+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999998544477889999999999999987 4555544568899999999998766544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=4.9e-16  Score=127.16  Aligned_cols=166  Identities=19%  Similarity=0.211  Sum_probs=137.8

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCcc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~~   98 (207)
                      ..+.++.++++.++. .-.++++.|++++|.+..++  .|..+++|++|++++|.++.+  ..+..+++|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           14 RAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            356777777765543 12368999999999999873  489999999999999999765  3588999999999999999


Q ss_pred             cccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233         99 EKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus        99 ~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      +.++  .+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+.
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCcCcccChh
Confidence            8885  36789999999999999987544 6788999999999999999875 366788999999999999998754433


Q ss_pred             HHHHHHHhCCcceeccCcc
Q psy10233        177 YRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       177 ~~~~~~~~~~~L~~L~~~~  195 (207)
                          .+..+++|+.|++..
T Consensus       171 ----~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          171 ----ALSHLHGLIVLRLRH  185 (477)
T ss_dssp             ----HHTTCTTCCEEEEES
T ss_pred             ----HhcccCCCcEEeCCC
Confidence                478899999988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=5.8e-16  Score=130.13  Aligned_cols=82  Identities=22%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC  185 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  185 (207)
                      .+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..++.| .|++++|.+.+..|..    +..+
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~~----~~~l  546 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSL----LPIL  546 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCGG-GGGGGTTCCSC-EEECCSSCCCCCCGGG----HHHH
T ss_pred             cCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCccCcC-ChhHhCccccc-EEECcCCcccccCHhh----cccC
Confidence            33444444444444443222 3344455555555555555543 34444555555 5555555555433332    3344


Q ss_pred             CcceeccCc
Q psy10233        186 VNLRHLDDY  194 (207)
Q Consensus       186 ~~L~~L~~~  194 (207)
                      ++|+.|++.
T Consensus       547 ~~L~~L~l~  555 (606)
T 3t6q_A          547 SQQRTINLR  555 (606)
T ss_dssp             HTSSEEECT
T ss_pred             CCCCEEeCC
Confidence            555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=8.4e-17  Score=125.00  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             CCCeEEeecCCCcCc-cCccCC-----CCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccc----ccCC--cccc
Q psy10233         21 LNDVLYLHFKGYTVI-ENLEEY-----TGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKV----MENL--SHMQ   86 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~-~~l~~l-----~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~----~~~~--~~~~   86 (207)
                      ..+.++++.|.++.. ..++.+     ++|++|++++|.+...+  .+..+++|++|++++|.+..    ++.+  ..++
T Consensus       122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  201 (312)
T 1wwl_A          122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP  201 (312)
T ss_dssp             CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred             CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence            345567777776543 233343     67777777777777664  36677777777777776432    2222  5667


Q ss_pred             CCcEEecCCCccccccC-----CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc
Q psy10233         87 LLDTINLSHNFIEKIEN-----LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR  161 (207)
Q Consensus        87 ~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  161 (207)
                      +|++|++++|.++.++.     +..+++|+.|++++|.+++..+...+..+++|+.|++++|.++.  ++..+.  ++|+
T Consensus       202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~  277 (312)
T 1wwl_A          202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLS  277 (312)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSSCC--SEEE
T ss_pred             CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhhcc--CCce
Confidence            77777777777764321     23456777777777777664433445556777777777777764  344433  6777


Q ss_pred             EEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       162 ~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .|++++|.+.+. |.     +..+++|+.|++.+
T Consensus       278 ~L~Ls~N~l~~~-p~-----~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          278 VLDLSYNRLDRN-PS-----PDELPQVGNLSLKG  305 (312)
T ss_dssp             EEECCSSCCCSC-CC-----TTTSCEEEEEECTT
T ss_pred             EEECCCCCCCCC-hh-----HhhCCCCCEEeccC
Confidence            777777777643 43     45667777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=7.8e-16  Score=114.45  Aligned_cols=145  Identities=15%  Similarity=0.170  Sum_probs=121.5

Q ss_pred             CCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCC
Q psy10233         43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHN  118 (207)
Q Consensus        43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n  118 (207)
                      .-+.++.+++.+..+|.-. .++|++|++++|.++.+.  .+..+++|++|++++|.++.++.  +..+++|+.|++++|
T Consensus        20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            3567899999998887521 388999999999997663  48899999999999999988853  678999999999999


Q ss_pred             ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .++.++. ..+..+++|+.|++++|.++.  ++..+..+++|+.|++++|.+.+..+.    .+..+++|+.|++..
T Consensus        99 ~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           99 QLTVLPS-AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHG----AFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECTT
T ss_pred             cCCccCh-hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHH----HHhCCCCCCEEEeeC
Confidence            9988655 567889999999999999996  577778999999999999998844333    367889999888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=8.4e-16  Score=126.99  Aligned_cols=164  Identities=17%  Similarity=0.195  Sum_probs=104.6

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc----CCccccCCcEEecCCC
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME----NLSHMQLLDTINLSHN   96 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~L~~L~l~~~   96 (207)
                      +.++++.+++........+++|+.|++++|.+...  ..+..+++|++|++++|.++.++    .+..+++|++|++++|
T Consensus       305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            34555555554333335677788888888877762  34677777888888887776432    2567777888888887


Q ss_pred             cccc-cc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233         97 FIEK-IE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus        97 ~~~~-~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      .+.. +|  .+..+++|+.|++++|.+++... ..+.  ++|+.|++++|.++.  ++..+..+++|+.|++++|.+. .
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~-~  458 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLK-S  458 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-C
T ss_pred             cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--ccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCC-c
Confidence            7766 54  35566777777777777654222 1221  567777777777764  4554456777777777777766 4


Q ss_pred             hhhHHHHHHHhCCcceeccCcc
Q psy10233        174 IKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       174 ~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      +|..   .+..+++|+.|++..
T Consensus       459 l~~~---~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          459 VPDG---IFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCTT---TTTTCTTCCEEECCS
T ss_pred             cCHH---HhccCCcccEEECcC
Confidence            5543   245667777666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=1.3e-16  Score=131.14  Aligned_cols=146  Identities=18%  Similarity=0.326  Sum_probs=104.6

Q ss_pred             CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCc-cccCCcEEecCCCccccccCCCCCCCCcEEE
Q psy10233         40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLS-HMQLLDTINLSHNFIEKIENLSCLPVLRTLH  114 (207)
Q Consensus        40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  114 (207)
                      .+++|+.|++++|.+...+  .+..+++|++|++++|.++..  ..+. .+++|+.|++++|.++.++....+++|+.|+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  197 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEE
Confidence            4567777778877777762  467778888888888877643  2343 6788888888888887776666678888888


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc-cchhhHHHHHHHhCCcceeccC
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV-GKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      +++|.++++++  .+..+++|+.|++++|.+++  +|..+..+++|+.|++++|++. +.+|.    .+..++.|+.++.
T Consensus       198 Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~----~~~~l~~L~~l~~  269 (487)
T 3oja_A          198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAK  269 (487)
T ss_dssp             CCSSCCCEECG--GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHH----HHTTCHHHHHHHH
T ss_pred             CCCCCCCCCCH--hHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHH----HHHhCCCCcEEec
Confidence            88888877544  46677888888888888876  5666777788888888888876 33333    3455555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=1.1e-15  Score=127.54  Aligned_cols=141  Identities=20%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      ...++++.|.++.++  ..+++|+.|++++|.+..+|.+..  +|++|++++|.++.++.  .+++|+.|++++|.++.+
T Consensus        82 L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l  155 (571)
T 3cvr_A           82 ITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTML  155 (571)
T ss_dssp             CSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred             CCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcC
Confidence            344555555555444  345566666666666555544322  55555555555544433  344455555555544444


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCc---------------------------cEEEccCCCCCChhhHHHh
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL---------------------------SIVDVSHNQIEDEEVIEVF  154 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L---------------------------~~L~l~~n~l~~~~~~~~~  154 (207)
                      |.  .+++|+.|++++|.+++++.   +.  ++|                           +.|++++|.++.  +|..+
T Consensus       156 p~--~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l  226 (571)
T 3cvr_A          156 PE--LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENI  226 (571)
T ss_dssp             CC--CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGG
T ss_pred             CC--cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHH
Confidence            33  23444444444444443222   11  333                           555555555554  34434


Q ss_pred             ccCCCCcEEEcCCCccccchhhH
Q psy10233        155 GAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       155 ~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                      ..+++|+.|++++|++.+.+|..
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHH
Confidence            44555555555555555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=127.12  Aligned_cols=165  Identities=19%  Similarity=0.195  Sum_probs=133.0

Q ss_pred             eEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233         24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~   99 (207)
                      .++.+..+++.++. .-.+.++.|++++|.+..++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.+.
T Consensus        11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence            45666666765543 11357999999999999874  5889999999999999987664  4889999999999999998


Q ss_pred             ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233        100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                      .++  .+..+++|+.|++++|.++.++. ..+..+++|++|++++|.++...+|..++.+++|+.|++++|.+.+..+..
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred             ccCHhhhcCccccccccccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence            774  58889999999999999988655 458899999999999999987556788899999999999999988655543


Q ss_pred             HHHHHHhCCcc----eeccCc
Q psy10233        178 RRMFINLCVNL----RHLDDY  194 (207)
Q Consensus       178 ~~~~~~~~~~L----~~L~~~  194 (207)
                          +..+.+|    ..+++.
T Consensus       169 ----~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          169 ----LRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ----GHHHHTCTTCCCEEECT
T ss_pred             ----ccchhccchhhhhcccC
Confidence                3444555    455554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=1.2e-15  Score=129.90  Aligned_cols=167  Identities=21%  Similarity=0.285  Sum_probs=138.0

Q ss_pred             CeEEeecCCCcCcc-CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233         23 DVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF   97 (207)
Q Consensus        23 ~~l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~   97 (207)
                      ..++++.++++.++ .+.  ++++.|++++|.+..++  .+..+++|++|++++|.++...  .+..+++|++|++++|.
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            46788888887655 343  78999999999999875  3889999999999999987653  37889999999999999


Q ss_pred             cccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        98 ~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +..+|.  +..+++|++|++++|.++++++ ..+..+++|++|++++|.+++. .+..++.+++|+.|++++|.+.+..+
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence            988863  8889999999999999988654 5788999999999999999875 46667889999999999999886555


Q ss_pred             hHHHHHHHhCCcceeccCcc
Q psy10233        176 NYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       176 ~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ....  ...+++|+.|+++.
T Consensus       163 ~~~~--~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          163 EELD--IFANSSLKKLELSS  180 (680)
T ss_dssp             HHHG--GGTTCEESEEECTT
T ss_pred             HHhh--ccccccccEEECCC
Confidence            4311  23568999998865

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.6e-15  Score=109.86  Aligned_cols=120  Identities=16%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             eEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccC---CccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCc
Q psy10233         24 VLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIEN---LDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF   97 (207)
Q Consensus        24 ~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~---~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~   97 (207)
                      .++++.++++.++. +.  .+++.|++++|.+..++.   +..+++|++|++++|.++.+  ..+..+++|++|++++|.
T Consensus        12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            34455555443332 21  245555555555554421   44455555555555555433  124445555555555555


Q ss_pred             ccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233         98 IEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus        98 ~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                      ++.++  .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence            44442  14444455555555554444322 33444444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.65  E-value=3.9e-18  Score=124.17  Aligned_cols=142  Identities=27%  Similarity=0.385  Sum_probs=96.5

Q ss_pred             CccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccC-CCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         60 LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        60 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      +..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|+.|++++|.+++++   .+..+++|+.|
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~---~~~~l~~L~~L  120 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH---HHHHHHHSSEE
T ss_pred             HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC---ccccCCCCCEE
Confidence            44555556666655555555555555666666666665555443 223356777777777766643   35566788888


Q ss_pred             EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh------hHHHHHHHhCCcceeccCcccCHHhhhhh
Q psy10233        139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA  204 (207)
Q Consensus       139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~------~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  204 (207)
                      ++++|.+++.+....+..+++|+.|++++|++.+.+|      .+....+..+++|+.||...+...++..|
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a  192 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA  192 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHH
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHH
Confidence            8888888875434577889999999999998876554      34455688999999999988887776655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=7.2e-17  Score=126.26  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             ccCCCCCCEEEeecCCccC--cc-CCccCCCCCEEEeecCcccc--ccCCccccCCcEEecCCC-cccc--ccC-CCCCC
Q psy10233         38 LEEYTGLKCLWLENNGISK--IE-NLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHN-FIEK--IEN-LSCLP  108 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~--~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~-~~~~--~~~-~~~~~  108 (207)
                      +.++++|+.|++++|.+..  ++ .+..+++|++|++++|.+..  +..+..+++|++|++++| .++.  ++. +..++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            3445556666666655543  22 24455666666666665532  123445566666666666 4442  222 44455


Q ss_pred             CCcEEEcCCC-ccCCccccccCCCCC-CccEEEccCC--CCCChhhHHHhccCCCCcEEEcCCCc-cccchhhHHHHHHH
Q psy10233        109 VLRTLHLSHN-RLKTIEDIEHLKDCP-LLSIVDVSHN--QIEDEEVIEVFGAMPELRVLTLSHNP-CVGKIKNYRRMFIN  183 (207)
Q Consensus       109 ~L~~L~l~~n-~i~~~~~~~~l~~~~-~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~  183 (207)
                      +|+.|++++| .+++......+..++ +|+.|++++|  .+++..++..+..+++|+.|++++|. +++..+..    +.
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~  244 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE----FF  244 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG----GG
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH----Hh
Confidence            6666666666 554422222345555 6666666666  44434455555666666666666666 44333332    45


Q ss_pred             hCCcceeccCccc
Q psy10233        184 LCVNLRHLDDYPV  196 (207)
Q Consensus       184 ~~~~L~~L~~~~~  196 (207)
                      .+++|++|+++.+
T Consensus       245 ~l~~L~~L~l~~~  257 (336)
T 2ast_B          245 QLNYLQHLSLSRC  257 (336)
T ss_dssp             GCTTCCEEECTTC
T ss_pred             CCCCCCEeeCCCC
Confidence            5666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.65  E-value=3.9e-15  Score=124.12  Aligned_cols=125  Identities=14%  Similarity=0.228  Sum_probs=85.3

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE  102 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~  102 (207)
                      ..++++.|.++.++.  .+++|+.|++++|.+..+|.  .+++|++|++++|.++.++.+.  ++|+.|++++|.++.+|
T Consensus       123 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          123 KHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC
T ss_pred             CEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchh
Confidence            345555555544444  45666666666666666555  4567777777777776665543  77888888888887776


Q ss_pred             CCCCCCCC-------cEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233        103 NLSCLPVL-------RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus       103 ~~~~~~~L-------~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                      .+..  +|       +.|++++|.++.++.  .+..+++|+.|++++|.+++. .+..+..++
T Consensus       197 ~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~  254 (571)
T 3cvr_A          197 AVPV--RNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSR-IRESLSQQT  254 (571)
T ss_dssp             CCC----------CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHH-HHHHHHHHH
T ss_pred             hHHH--hhhcccccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCc-CHHHHHHhh
Confidence            6332  66       889999999887654  455589999999999999875 566665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.7e-16  Score=110.21  Aligned_cols=127  Identities=26%  Similarity=0.319  Sum_probs=102.8

Q ss_pred             CCCCCEEEeecCCcc--CccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc-ccC-CCCCCCCcEEEc
Q psy10233         41 YTGLKCLWLENNGIS--KIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK-IEN-LSCLPVLRTLHL  115 (207)
Q Consensus        41 l~~L~~L~l~~~~l~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l  115 (207)
                      .++++.|++++|.+.  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. +|. +..+++|+.|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            467888999999887  5554 67888999999999988777778888999999999998887 554 345789999999


Q ss_pred             CCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcCC
Q psy10233        116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLSH  167 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~~  167 (207)
                      ++|.+++.+.+..+..+++|+.|++++|.+++...  ...+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999886544578889999999999999887531  14778899999998763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=5.7e-16  Score=134.99  Aligned_cols=157  Identities=16%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             CCCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCcc-Cc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcE
Q psy10233         18 TPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGIS-KI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDT   90 (207)
Q Consensus        18 ~~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~-~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~   90 (207)
                      .|..++.+++++|.++.+  ..+.++++|+.|++++|... .+ + .+..+++|++|++++|.++..  ..+..+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            344556677777777543  46777777777777777433 33 2 367777777777777777544  34677777777


Q ss_pred             EecCCCccccc-c-C--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC--CCCcEEE
Q psy10233         91 INLSHNFIEKI-E-N--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM--PELRVLT  164 (207)
Q Consensus        91 L~l~~~~~~~~-~-~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~l~  164 (207)
                      |++++|.+... + .  +..+++|+.|++++|.+++......+..+++|+.|++++|.++.. .+..+..+  ++|+.|+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEE
Confidence            77777777642 2 2  666777777777777776654434567777777777777777653 23333333  5666777


Q ss_pred             cCCCccccchh
Q psy10233        165 LSHNPCVGKIK  175 (207)
Q Consensus       165 l~~n~~~~~~~  175 (207)
                      ++.|.+.+..+
T Consensus       181 L~~n~l~~~~~  191 (844)
T 3j0a_A          181 LAANSLYSRVS  191 (844)
T ss_dssp             ECCSBSCCCCC
T ss_pred             CCCCccccccc
Confidence            77776665444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=132.56  Aligned_cols=153  Identities=17%  Similarity=0.187  Sum_probs=128.0

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcc-ccc--cCCccccCCcEEecCCCc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLV-KVM--ENLSHMQLLDTINLSHNF   97 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~-~~~--~~~~~~~~L~~L~l~~~~   97 (207)
                      ...+++.++++.+|.  ..+++++|++++|.+..+  ..+..+++|++|++++|.. ..+  ..+..+++|++|++++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            357888888887776  568999999999999886  3589999999999999944 333  458999999999999999


Q ss_pred             cccc-c-CCCCCCCCcEEEcCCCccCCc-cccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233         98 IEKI-E-NLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI  174 (207)
Q Consensus        98 ~~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  174 (207)
                      +..+ | .+..+++|+.|++++|.+++. +....+..+++|++|++++|.+++...+..++.+++|+.|++++|.+.+..
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            9877 4 588899999999999999863 332358899999999999999988644467899999999999999988766


Q ss_pred             hhH
Q psy10233        175 KNY  177 (207)
Q Consensus       175 ~~~  177 (207)
                      +..
T Consensus       165 ~~~  167 (844)
T 3j0a_A          165 EHE  167 (844)
T ss_dssp             SGG
T ss_pred             HHH
Confidence            654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.8e-16  Score=121.89  Aligned_cols=145  Identities=19%  Similarity=0.161  Sum_probs=77.9

Q ss_pred             CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccc---c-c--CCccccCCcEEecCCCccccccC-----CCC
Q psy10233         40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKV---M-E--NLSHMQLLDTINLSHNFIEKIEN-----LSC  106 (207)
Q Consensus        40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~---~-~--~~~~~~~L~~L~l~~~~~~~~~~-----~~~  106 (207)
                      .+++|+.|++++|.+...+  .+..+++|++|++++|.+..   + .  .+..+++|++|++++|.++.++.     +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            4555555555555555442  24555666666666665421   1 1  12345556666666665554322     234


Q ss_pred             CCCCcEEEcCCCccCCccccccCCC---CCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233        107 LPVLRTLHLSHNRLKTIEDIEHLKD---CPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN  183 (207)
Q Consensus       107 ~~~L~~L~l~~n~i~~~~~~~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  183 (207)
                      +++|+.|++++|.+++..+ ..+..   +++|+.|++++|.++.  ++..+  .++|+.|++++|.+.+ +|.     ..
T Consensus       223 l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~-~~~-----~~  291 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNR-APQ-----PD  291 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCS-CCC-----TT
T ss_pred             CCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCC-Cch-----hh
Confidence            4666666666666665422 12222   3567777777777664  34333  2567777777777663 222     24


Q ss_pred             hCCcceeccCcc
Q psy10233        184 LCVNLRHLDDYP  195 (207)
Q Consensus       184 ~~~~L~~L~~~~  195 (207)
                      .+++|+.|+++.
T Consensus       292 ~l~~L~~L~L~~  303 (310)
T 4glp_A          292 ELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCCSCEECSS
T ss_pred             hCCCccEEECcC
Confidence            556666666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.64  E-value=6.3e-15  Score=120.07  Aligned_cols=138  Identities=20%  Similarity=0.307  Sum_probs=68.9

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      .+.+++++|.++.+++++++++|+.|++++|.+..+|..  .++|++|++++|.++.++.++.+++|+.|++++|.+..+
T Consensus       133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC
Confidence            344555555554444555555555555555555544432  135555555555555444555555555555555555444


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      |...  ++|+.|++++|.++.++   .+..+++|+.|++++|.+++.  +.   .+++|+.|++++|.+.
T Consensus       211 ~~~~--~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~l--~~---~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          211 PDLP--LSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTL--PD---LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             CCCC--TTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSC--CS---CCTTCCEEECCSSCCS
T ss_pred             CCCc--CcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCcc--cc---cccccCEEECCCCccc
Confidence            3322  35555555555554332   244555566666666655542  21   1244555555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=9.8e-16  Score=129.71  Aligned_cols=152  Identities=18%  Similarity=0.304  Sum_probs=92.5

Q ss_pred             CCCeEEeecCCCcCccC---ccCCCCCCEEEeecCCcc-CccCCccCCCCCEEEeecCcccccc-CCccccC-CcEEecC
Q psy10233         21 LNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGIS-KIENLDAQTEMRSIYMHHNLVKVME-NLSHMQL-LDTINLS   94 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~---l~~l~~L~~L~l~~~~l~-~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~-L~~L~l~   94 (207)
                      ..+.++++.|.++.++.   ++++++|+.|++++|.+. .+|.+..+++|++|++++|.++.++ .+..+++ |++|+++
T Consensus       306 ~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence            34566777777665443   677777777777777777 5566666777777777777665443 3666776 7777777


Q ss_pred             CCccccccC-CCCC--CCCcEEEcCCCccCCccccccCC-------CCCCccEEEccCCCCCChhhHHHhccCCCCcEEE
Q psy10233         95 HNFIEKIEN-LSCL--PVLRTLHLSHNRLKTIEDIEHLK-------DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT  164 (207)
Q Consensus        95 ~~~~~~~~~-~~~~--~~L~~L~l~~n~i~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~  164 (207)
                      +|.++.+|. +...  ++|+.|++++|.+++..+ ..+.       .+++|+.|++++|.++.. ....+..+++|+.|+
T Consensus       386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~  463 (636)
T 4eco_A          386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSIN  463 (636)
T ss_dssp             SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEE
T ss_pred             CCcCcccchhhhhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEE
Confidence            777766553 2222  356777777776655322 2333       445666666666666643 123344456666666


Q ss_pred             cCCCccccchh
Q psy10233        165 LSHNPCVGKIK  175 (207)
Q Consensus       165 l~~n~~~~~~~  175 (207)
                      +++|.+. .+|
T Consensus       464 Ls~N~l~-~i~  473 (636)
T 4eco_A          464 LMGNMLT-EIP  473 (636)
T ss_dssp             CCSSCCS-BCC
T ss_pred             CCCCCCC-CcC
Confidence            6666554 444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.63  E-value=4.7e-15  Score=123.74  Aligned_cols=133  Identities=18%  Similarity=0.262  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc----CCccccCCcEEecCCCcccc-cc--CCCCCC-
Q psy10233         39 EEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME----NLSHMQLLDTINLSHNFIEK-IE--NLSCLP-  108 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~-  108 (207)
                      ..+++|+.|++++|.+...  ..+..+++|++|++++|.++.++    .+..+++|++|++++|.+.. +|  .+..++ 
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3445555555555555442  22444555555555555544322    24444555555555555443 32  133334 


Q ss_pred             ---------------------CCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH-HhccCCCCcEEEcC
Q psy10233        109 ---------------------VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGAMPELRVLTLS  166 (207)
Q Consensus       109 ---------------------~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~l~l~  166 (207)
                                           +|+.|++++|.++.++.  .+..+++|+.|++++|.++..  +. .+..+++|+.++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSV--PDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCC--CTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCC--CHHHHhcCCCCCEEEec
Confidence                                 45555555555444332  222445555555555555542  22 24455555555555


Q ss_pred             CCccccchh
Q psy10233        167 HNPCVGKIK  175 (207)
Q Consensus       167 ~n~~~~~~~  175 (207)
                      +|++.++.+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.4e-16  Score=135.42  Aligned_cols=124  Identities=20%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             CCCeEEeecCCCc--CccCccCCCCCCEEEeecCC-ccC--ccC-C-------ccCCCCCEEEeecCccccccC---Ccc
Q psy10233         21 LNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNG-ISK--IEN-L-------DAQTEMRSIYMHHNLVKVMEN---LSH   84 (207)
Q Consensus        21 ~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~-l~~--~~~-~-------~~l~~L~~L~l~~n~~~~~~~---~~~   84 (207)
                      ..+.++++.|.+.  .+..++++++|+.|++++|. +..  +|. +       ..+++|++|++++|.++.++.   +..
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~  571 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK  571 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc
Confidence            4556788887752  34567778888888888876 554  331 2       234477777777776665544   666


Q ss_pred             ccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCC-ccEEEccCCCCC
Q psy10233         85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL-LSIVDVSHNQIE  146 (207)
Q Consensus        85 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~-L~~L~l~~n~l~  146 (207)
                      +++|+.|++++|.+..+|.+..+++|+.|++++|.++.++.  .+..+++ |+.|++++|.++
T Consensus       572 L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~--~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE--DFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCT--TSCEECTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchH--HHhhccccCCEEECcCCCCC
Confidence            67777777777766655666666666666666666654332  3555555 666666666555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=3.7e-15  Score=123.16  Aligned_cols=151  Identities=22%  Similarity=0.261  Sum_probs=125.9

Q ss_pred             CCCCCeEEeecCCCcC--ccCccCCCCCCEEEeecCCccCcc----CCccCCCCCEEEeecCcccc-cc--CCccccCCc
Q psy10233         19 PSLNDVLYLHFKGYTV--IENLEEYTGLKCLWLENNGISKIE----NLDAQTEMRSIYMHHNLVKV-ME--NLSHMQLLD   89 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~n~~~~-~~--~~~~~~~L~   89 (207)
                      ....+.++++.|.+..  +..++++++|+.|++++|.+..++    .+..+++|++|++++|.+.. ++  .+..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            3455678999999865  678899999999999999999753    27889999999999999975 54  377889999


Q ss_pred             EEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH-HhccCCCCcEEEcC
Q psy10233         90 TINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGAMPELRVLTLS  166 (207)
Q Consensus        90 ~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~l~l~  166 (207)
                      +|++++|.++.. + .+.  ++|+.|++++|.++.++.  .+..+++|+.|++++|.++..  +. .+..+++|+.|+++
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECC
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCcc--CHHHhccCCcccEEECc
Confidence            999999998643 3 232  799999999999987655  455899999999999999974  44 47889999999999


Q ss_pred             CCccccchh
Q psy10233        167 HNPCVGKIK  175 (207)
Q Consensus       167 ~n~~~~~~~  175 (207)
                      +|++.++.+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            999988766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=9.2e-15  Score=104.28  Aligned_cols=129  Identities=16%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             CCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233         44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR  119 (207)
Q Consensus        44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~  119 (207)
                      .+.++++++.+..+|. .-.++|++|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|+.|++++|.
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            3566666666666653 112567777777777655432  5667777777777777776642  5667788888888887


Q ss_pred             cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233        120 LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus        88 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPN-GVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCH-HHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeeccCc
Confidence            776544 4567777888888888888764 24455677888888888888877665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.1e-16  Score=125.26  Aligned_cols=181  Identities=17%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             hcCCccCCCCCCeEEeecCCCcCccCccCC--CCCCEEEeecCCccCc-cCCccCCCCCEEEeecCcccc--c-cCCccc
Q psy10233         12 DNKLYLTPSLNDVLYLHFKGYTVIENLEEY--TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKV--M-ENLSHM   85 (207)
Q Consensus        12 ~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~--~-~~~~~~   85 (207)
                      |.++..+|...+.++++.+.+. ...+..+  +.++.+++++|.+... +.+..+++|++|++++|.+..  + ..+..+
T Consensus        39 W~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~  117 (336)
T 2ast_B           39 WYRLASDESLWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC  117 (336)
T ss_dssp             HHHHHTCSTTSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred             HHHHhcCchhheeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence            4555555666666777766654 3334444  6777777777777665 345567777777777776642  2 235667


Q ss_pred             cCCcEEecCCCccccc--cCCCCCCCCcEEEcCCC-ccCCccccccCCCCCCccEEEccCC-CCCChhhHHHhccCC-CC
Q psy10233         86 QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHN-RLKTIEDIEHLKDCPLLSIVDVSHN-QIEDEEVIEVFGAMP-EL  160 (207)
Q Consensus        86 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~-~L  160 (207)
                      ++|++|++++|.++..  ..+..+++|+.|++++| .+++......+..+++|++|++++| .+++..++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            7777777777766532  23555677777777777 4554222234556677777777777 776654566667777 77


Q ss_pred             cEEEcCCCc--cc-cchhhHHHHHHHhCCcceeccCcccC
Q psy10233        161 RVLTLSHNP--CV-GKIKNYRRMFINLCVNLRHLDDYPVF  197 (207)
Q Consensus       161 ~~l~l~~n~--~~-~~~~~~~~~~~~~~~~L~~L~~~~~~  197 (207)
                      +.|++++|.  +. +.++.    .+..+++|+.|+++.+.
T Consensus       198 ~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCT
T ss_pred             CEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCC
Confidence            777777773  33 22232    45667777777776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=8.5e-15  Score=122.19  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=90.2

Q ss_pred             CCCCeEEeecCCCcC--ccCccCCCCCCEEEeecCCccCcc----CCccCCCCCEEEeecCcccc-ccC--Ccc------
Q psy10233         20 SLNDVLYLHFKGYTV--IENLEEYTGLKCLWLENNGISKIE----NLDAQTEMRSIYMHHNLVKV-MEN--LSH------   84 (207)
Q Consensus        20 ~~~~~l~l~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~n~~~~-~~~--~~~------   84 (207)
                      ...+.++++.|.++.  +..+.++++|+.|++++|.+..++    .+..+++|++|++++|.++. ++.  +..      
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            344566777777653  455667777777777777776542    25666777777777766643 221  222      


Q ss_pred             ---------------c-cCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233         85 ---------------M-QLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus        85 ---------------~-~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                                     + ++|++|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+.+++++|.+..
T Consensus       433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCBCC
T ss_pred             EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCcCC
Confidence                           2 56777778777777775 46688999999999999998665 358889999999999999986

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=1.7e-14  Score=117.56  Aligned_cols=120  Identities=24%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             CCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCC
Q psy10233         43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKT  122 (207)
Q Consensus        43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  122 (207)
                      +|++|++++|.+..+|.+..+++|++|++++|.++.++..  .++|++|++++|.++.+|.+..+++|+.|++++|.+++
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc
Confidence            4555555555555554455555555555555555443321  23555555555555555555555666666666665554


Q ss_pred             ccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233        123 IEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus       123 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      ++.  .   .++|+.|++++|.++.  ++. ++.+++|+.|++++|.+.+
T Consensus       210 l~~--~---~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          210 LPD--L---PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCC--C---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS
T ss_pred             CCC--C---cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc
Confidence            332  1   1356666776666664  333 5667777777777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=1e-14  Score=105.67  Aligned_cols=124  Identities=24%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             EEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233         46 CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKT  122 (207)
Q Consensus        46 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~  122 (207)
                      .++++++.+..+|.- -.+++++|++++|.++.++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.
T Consensus        14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            445555554444321 0134555555555554332 3445555555555555555442  24455555555555555555


Q ss_pred             ccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233        123 IEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus       123 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      ++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+
T Consensus        93 i~~-~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           93 IPP-RTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCT-TTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEEC
T ss_pred             eCH-HHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeec
Confidence            433 3455555566666666655543 23344555566666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.4e-14  Score=126.07  Aligned_cols=153  Identities=18%  Similarity=0.271  Sum_probs=99.7

Q ss_pred             CCCeEEeecCCCcCccC---ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccC-CcEEecCC
Q psy10233         21 LNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQL-LDTINLSH   95 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~---l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~-L~~L~l~~   95 (207)
                      ..+.++++.|.+..++.   ++++++|+.|++++|.+..+|.+..+++|++|++++|.+..++ .+..+++ |+.|++++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            45577888888865554   7888888888888888887777888888888888888876554 4777877 88888888


Q ss_pred             CccccccC-CCCC--CCCcEEEcCCCccCCccc-c-ccCC--CCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233         96 NFIEKIEN-LSCL--PVLRTLHLSHNRLKTIED-I-EHLK--DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN  168 (207)
Q Consensus        96 ~~~~~~~~-~~~~--~~L~~L~l~~n~i~~~~~-~-~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n  168 (207)
                      |.+..+|. +...  ++|+.|++++|.+.+..+ . ..+.  .+++|+.|++++|.++.. ....+..+++|+.|++++|
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNN  707 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCC
Confidence            88776654 2333  237777777777655221 0 0111  223566666666666642 1233345556666666666


Q ss_pred             ccccchh
Q psy10233        169 PCVGKIK  175 (207)
Q Consensus       169 ~~~~~~~  175 (207)
                      .+. .+|
T Consensus       708 ~L~-~ip  713 (876)
T 4ecn_A          708 LMT-SIP  713 (876)
T ss_dssp             CCS-CCC
T ss_pred             cCC-ccC
Confidence            554 444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=3.5e-15  Score=115.70  Aligned_cols=165  Identities=17%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             CCeEEeecCCCcC--ccCc--cCCCCCCEEEeecCCccCc-c-----CCccCCCCCEEEeecCcccccc--CCccccCCc
Q psy10233         22 NDVLYLHFKGYTV--IENL--EEYTGLKCLWLENNGISKI-E-----NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLD   89 (207)
Q Consensus        22 ~~~l~l~~~~~~~--~~~l--~~l~~L~~L~l~~~~l~~~-~-----~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~   89 (207)
                      .+.++++.|.+..  +..+  .++++|++|++++|.+... +     .+..+++|++|++++|.+...+  .++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4455566665532  2233  5566666666666666542 1     1234566666666666664432  355666666


Q ss_pred             EEecCCCcccc---cc---CCCCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCChhhHHHhccC---C
Q psy10233         90 TINLSHNFIEK---IE---NLSCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM---P  158 (207)
Q Consensus        90 ~L~l~~~~~~~---~~---~~~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~  158 (207)
                      +|++++|.+..   ++   .+..+++|+.|++++|.++.++..  ..+..+++|++|++++|.+++. .|..+..+   +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcC
Confidence            66666665432   11   124556666666666666543221  0134456666666666666653 13333333   4


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +|+.|++++|.+. .+|...      .++|+.|+++
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~------~~~L~~L~Ls  280 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGL------PAKLRVLDLS  280 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCC------CSCCSCEECC
T ss_pred             cCCEEECCCCCCC-chhhhh------cCCCCEEECC
Confidence            6666666666665 455421      2566666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=6.3e-14  Score=118.06  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=84.5

Q ss_pred             CCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccC
Q psy10233         42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK  121 (207)
Q Consensus        42 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~  121 (207)
                      ++|+.|++++|.+..++..  .++|+.|++++|.++.++.  .+++|+.|++++|.++.+|  ..+++|+.|++++|.++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence            4444444444444443321  2445555555555444332  2367888888888877766  44578888888888887


Q ss_pred             CccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233        122 TIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR  179 (207)
Q Consensus       122 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  179 (207)
                      .++.     .+++|+.|++++|.++.  +|..+..+++|+.|++++|++.+..+....
T Consensus       255 ~lp~-----~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          255 SLPM-----LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCCC-----CCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             cCCc-----ccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            6543     45788999999999885  567788899999999999998877776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=4.6e-17  Score=118.43  Aligned_cols=132  Identities=27%  Similarity=0.354  Sum_probs=113.0

Q ss_pred             CccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEc
Q psy10233         37 NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHL  115 (207)
Q Consensus        37 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  115 (207)
                      .++++++|+.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+|.+..+++|+.|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            678999999999999999999888889999999999999987765 4567899999999999988877777899999999


Q ss_pred             CCCccCCccccccCCCCCCccEEEccCCCCCChhhH----------HHhccCCCCcEEEcCCCccc
Q psy10233        116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI----------EVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~~L~~l~l~~n~~~  171 (207)
                      ++|.+++++....+..+++|+.|++++|.+.+. .+          ..+..+++|+.|+  ++++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999998865545688899999999999988653 22          3477899999987  66655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.56  E-value=2.1e-15  Score=120.35  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             CCCCEEEeecCccc--ccc----CCccccCCcEEecCCCcccc------cc-CCCCCCCCcEEEcCCCccCCc---cccc
Q psy10233         64 TEMRSIYMHHNLVK--VME----NLSHMQLLDTINLSHNFIEK------IE-NLSCLPVLRTLHLSHNRLKTI---EDIE  127 (207)
Q Consensus        64 ~~L~~L~l~~n~~~--~~~----~~~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~n~i~~~---~~~~  127 (207)
                      ++|++|++++|.+.  .++    .+..+++|++|++++|.++.      .+ .+..+++|+.|++++|.++..   ..+.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            56666666666653  112    23456667777777776651      23 555667777777777776421   1122


Q ss_pred             cCCCCCCccEEEccCCCCCChh---hHHHhc--cCCCCcEEEcCCCccccc----hhhHHHHHHHhCCcceeccCcc
Q psy10233        128 HLKDCPLLSIVDVSHNQIEDEE---VIEVFG--AMPELRVLTLSHNPCVGK----IKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       128 ~l~~~~~L~~L~l~~n~l~~~~---~~~~~~--~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .+..+++|+.|++++|.+++.+   ++..+.  .+++|+.|++++|.+.+.    +|..   +..++++|++|++++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~---l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV---IDEKMPDLLFLELNG  312 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH---HHHHCTTCCEEECTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH---HHhcCCCceEEEccC
Confidence            4566677777777777776532   233442  267778888888777652    4432   235677777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=7.6e-14  Score=100.92  Aligned_cols=128  Identities=17%  Similarity=0.263  Sum_probs=111.3

Q ss_pred             CEEEeecCCccCccC-CccCCCCCEEEeecCccccccC---CccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCC
Q psy10233         45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHN  118 (207)
Q Consensus        45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n  118 (207)
                      +.++++++.+..+|. +.  .++++|++++|.++.++.   +..+++|++|++++|.++.+ | .+..+++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999999998875 33  389999999999976643   78999999999999999887 3 5888999999999999


Q ss_pred             ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233        119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                      .+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+..+.
T Consensus        89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           89 KIKEISN-KMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCEECS-SSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCccCH-HHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9988655 5688899999999999999975 477888999999999999999887663

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.6e-13  Score=97.77  Aligned_cols=124  Identities=19%  Similarity=0.288  Sum_probs=104.1

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCcc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFI   98 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~   98 (207)
                      ..++++.++++.++. .-.++|+.|++++|.+..++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            456777888766552 234789999999999998753  7889999999999999987654  68899999999999999


Q ss_pred             ccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233         99 EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus        99 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~  148 (207)
                      +.++.  +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+...
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence            88753  6788999999999999988655 5678899999999999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=2.4e-15  Score=120.02  Aligned_cols=158  Identities=18%  Similarity=0.242  Sum_probs=98.4

Q ss_pred             cCCCCCCEEEeecCCccC-----cc-CCccCCCCCEEEeecCcccccc--C----Cccc---------cCCcEEecCCCc
Q psy10233         39 EEYTGLKCLWLENNGISK-----IE-NLDAQTEMRSIYMHHNLVKVME--N----LSHM---------QLLDTINLSHNF   97 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~-----~~-~~~~l~~L~~L~l~~n~~~~~~--~----~~~~---------~~L~~L~l~~~~   97 (207)
                      ..+++|+.|++++|.+..     ++ .+..+++|++|++++|.+....  .    +..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            456666667776666655     22 2455667777777777664221  1    2223         677777777777


Q ss_pred             ccc--cc----CCCCCCCCcEEEcCCCccCCcc----ccccCCCCCCccEEEccCCCCCC---hhhHHHhccCCCCcEEE
Q psy10233         98 IEK--IE----NLSCLPVLRTLHLSHNRLKTIE----DIEHLKDCPLLSIVDVSHNQIED---EEVIEVFGAMPELRVLT  164 (207)
Q Consensus        98 ~~~--~~----~~~~~~~L~~L~l~~n~i~~~~----~~~~l~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~l~  164 (207)
                      ++.  ++    .+..+++|+.|++++|.++..+    ....+..+++|+.|++++|.+++   ..++..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            652  22    2445667888888888776321    11256677788888888888753   22466677788888888


Q ss_pred             cCCCccccchhhHHHHHHHh--CCcceeccCccc
Q psy10233        165 LSHNPCVGKIKNYRRMFINL--CVNLRHLDDYPV  196 (207)
Q Consensus       165 l~~n~~~~~~~~~~~~~~~~--~~~L~~L~~~~~  196 (207)
                      +++|.+.+.........+..  +++|+.|++++.
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence            88888765433322223433  788888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.4e-14  Score=120.92  Aligned_cols=125  Identities=20%  Similarity=0.366  Sum_probs=106.6

Q ss_pred             CCCEEEeecCccccccCCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233         65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN  143 (207)
Q Consensus        65 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n  143 (207)
                      .|++|++++|.++.++.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+++++   .+..+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCC
Confidence            58899999999988888999999999999999999886 5888899999999999998853   6888999999999999


Q ss_pred             CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233        144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      .+++...|..++.+++|+.|++++|++.+. |.....+...+++|+.||+
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence            999852278889999999999999998854 3344446778999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=99.92  Aligned_cols=123  Identities=23%  Similarity=0.280  Sum_probs=105.2

Q ss_pred             CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233         23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE   99 (207)
Q Consensus        23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~   99 (207)
                      ..++++.++++.++.- -.++++.|++++|.+..++ .+..+++|++|++++|.++.++  .|..+++|++|++++|.++
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            4678888888766531 2368999999999999886 5888999999999999998765  3889999999999999999


Q ss_pred             ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233        100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      .++  .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence            884  48889999999999999988655 568889999999999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=2e-13  Score=114.98  Aligned_cols=114  Identities=15%  Similarity=0.079  Sum_probs=76.2

Q ss_pred             CCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233         64 TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN  143 (207)
Q Consensus        64 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n  143 (207)
                      ++|+.|++++|.++.++.  ..++|+.|++++|.++.+|..  +++|+.|++++|.+++++     ..+++|+.|++++|
T Consensus       181 ~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLPSELKELMVSGN  251 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS
T ss_pred             CCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC-----CCCCcCcEEECCCC
Confidence            444444444444433322  124455555555555444322  367888888888877654     34578999999999


Q ss_pred             CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      .++..  +.   .+++|+.|++++|.+. .+|..    +..+++|+.|++.+.
T Consensus       252 ~L~~l--p~---~~~~L~~L~Ls~N~L~-~lp~~----l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          252 RLTSL--PM---LPSGLLSLSVYRNQLT-RLPES----LIHLSSETTVNLEGN  294 (622)
T ss_dssp             CCSCC--CC---CCTTCCEEECCSSCCC-SCCGG----GGGSCTTCEEECCSC
T ss_pred             CCCcC--Cc---ccccCcEEeCCCCCCC-cCCHH----HhhccccCEEEecCC
Confidence            99873  43   5789999999999988 77764    678999999988653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=3.3e-14  Score=118.72  Aligned_cols=123  Identities=22%  Similarity=0.428  Sum_probs=106.2

Q ss_pred             CCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccC
Q psy10233         43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK  121 (207)
Q Consensus        43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~  121 (207)
                      .|+.|++++|.+..+|.+..+++|++|++++|.++.++ .++.+++|+.|++++|.++.+|.+..+++|+.|++++|.++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            58899999999999988999999999999999997664 58899999999999999999998999999999999999999


Q ss_pred             CccccccCCCCCCccEEEccCCCCCChh--hHHHhccCCCCcEEEc
Q psy10233        122 TIEDIEHLKDCPLLSIVDVSHNQIEDEE--VIEVFGAMPELRVLTL  165 (207)
Q Consensus       122 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~l~l  165 (207)
                      +...+..+..+++|+.|++++|.+++..  ....+..+++|+.|++
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8742357889999999999999987642  1234556889998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=4.7e-14  Score=111.15  Aligned_cols=178  Identities=17%  Similarity=0.241  Sum_probs=116.1

Q ss_pred             hhhcCCccCC----CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccC-cc--CCccCCCCCE-EEeecCccccc
Q psy10233         10 CKDNKLYLTP----SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISK-IE--NLDAQTEMRS-IYMHHNLVKVM   79 (207)
Q Consensus        10 c~~~~~~~~~----~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~-L~l~~n~~~~~   79 (207)
                      |...+++..|    ...+.+++++|.++.++  .+.++++|+.|++++|.+.+ ++  .|..++++.+ +.+..|.++.+
T Consensus        16 C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             EESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             ecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            3444455444    34567999999998764  47899999999999998755 33  3667777665 45556777655


Q ss_pred             c--CCccccCCcEEecCCCccccccC---------------------------CCCC-CCCcEEEcCCCccCCccccccC
Q psy10233         80 E--NLSHMQLLDTINLSHNFIEKIEN---------------------------LSCL-PVLRTLHLSHNRLKTIEDIEHL  129 (207)
Q Consensus        80 ~--~~~~~~~L~~L~l~~~~~~~~~~---------------------------~~~~-~~L~~L~l~~n~i~~~~~~~~l  129 (207)
                      +  .|..+++|++|++++|.+..++.                           +..+ ..++.|++++|.++.++.  ..
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~--~~  173 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--SA  173 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT--TS
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh--hh
Confidence            2  36777888888887776654321                           1111 245667777777766544  22


Q ss_pred             CCCCCccEEEccC-CCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        130 KDCPLLSIVDVSH-NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       130 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      ....+++.+++.. |.++.. ..+.+..+++|+.|++++|.+. .+|..   .+.++.+|+.++..
T Consensus       174 f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTY  234 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCT
T ss_pred             ccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCC
Confidence            2345677777764 566553 2456778888999999999876 56543   25566666665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=1.9e-14  Score=113.94  Aligned_cols=101  Identities=17%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             CCCeEEeecCCCcCc------cCccCCC-CCCEEEeecCCccCcc--CCccC-----CCCCEEEeecCccccccC-----
Q psy10233         21 LNDVLYLHFKGYTVI------ENLEEYT-GLKCLWLENNGISKIE--NLDAQ-----TEMRSIYMHHNLVKVMEN-----   81 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~------~~l~~l~-~L~~L~l~~~~l~~~~--~~~~l-----~~L~~L~l~~n~~~~~~~-----   81 (207)
                      ..+.+++++|.+...      ..+.+++ +|++|++++|.+....  .+..+     ++|++|++++|.++....     
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            345566666665432      2345555 5666666666655431  12222     556666666665543211     


Q ss_pred             -Cccc-cCCcEEecCCCcccccc------CCCC-CCCCcEEEcCCCccC
Q psy10233         82 -LSHM-QLLDTINLSHNFIEKIE------NLSC-LPVLRTLHLSHNRLK  121 (207)
Q Consensus        82 -~~~~-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~n~i~  121 (207)
                       +..+ ++|++|++++|.++..+      .+.. .++|+.|++++|.++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence             2222 45556666655554431      1222 235555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=1.6e-14  Score=114.29  Aligned_cols=173  Identities=17%  Similarity=0.252  Sum_probs=125.2

Q ss_pred             EEeecCCCcC-ccCccC-CCCCCEEEeecCCccCcc------CCccCC-CCCEEEeecCcccccc--CCccc-----cCC
Q psy10233         25 LYLHFKGYTV-IENLEE-YTGLKCLWLENNGISKIE------NLDAQT-EMRSIYMHHNLVKVME--NLSHM-----QLL   88 (207)
Q Consensus        25 l~l~~~~~~~-~~~l~~-l~~L~~L~l~~~~l~~~~------~~~~l~-~L~~L~l~~n~~~~~~--~~~~~-----~~L   88 (207)
                      ..++.+++.. ++++.. .++|+.|++++|.+...+      .+..++ +|++|++++|.+....  .+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4567777753 444444 455999999999998763      256777 8999999999987542  34443     899


Q ss_pred             cEEecCCCcccccc------CCCCC-CCCcEEEcCCCccCCcccc---ccCCC-CCCccEEEccCCCCCChh---hHHHh
Q psy10233         89 DTINLSHNFIEKIE------NLSCL-PVLRTLHLSHNRLKTIEDI---EHLKD-CPLLSIVDVSHNQIEDEE---VIEVF  154 (207)
Q Consensus        89 ~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~n~i~~~~~~---~~l~~-~~~L~~L~l~~n~l~~~~---~~~~~  154 (207)
                      ++|++++|.++..+      .+... ++|+.|++++|.+++.+..   ..+.. .++|++|++++|.+++..   +...+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            99999999997652      14444 7999999999999775431   12344 358999999999888532   34445


Q ss_pred             ccCC-CCcEEEcCCCccccchhhHHHHHHHhC-CcceeccCcccC
Q psy10233        155 GAMP-ELRVLTLSHNPCVGKIKNYRRMFINLC-VNLRHLDDYPVF  197 (207)
Q Consensus       155 ~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~~~~~~  197 (207)
                      ..++ +|+.|++++|.+.+..+......+..+ ++|+.||++...
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            5555 899999999988776666665566777 488888887543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=8.9e-15  Score=125.48  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             ccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEE
Q psy10233         38 LEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLH  114 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~  114 (207)
                      +..++.|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|+|++|.++.+| .+..+++|+.|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            455666667777777666654 3556666777777777665443 3666666777777777666554 355666677777


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE  148 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~  148 (207)
                      +++|.++.++.  .+..+++|+.|+|++|.+++.
T Consensus       300 L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          300 FFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CCSSCCCCCCS--STTSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCCCccCh--hhhcCCCccEEeCCCCccCCC
Confidence            77776665433  466666677777777766653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.49  E-value=3.6e-14  Score=115.37  Aligned_cols=174  Identities=16%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             CCeEEeecCCCcC------ccCccCCCCCCEEEeecCCccCc--cC-----CccCCCCCEEEeecCccccc------cCC
Q psy10233         22 NDVLYLHFKGYTV------IENLEEYTGLKCLWLENNGISKI--EN-----LDAQTEMRSIYMHHNLVKVM------ENL   82 (207)
Q Consensus        22 ~~~l~l~~~~~~~------~~~l~~l~~L~~L~l~~~~l~~~--~~-----~~~l~~L~~L~l~~n~~~~~------~~~   82 (207)
                      .+.++++.|.++.      +..+.++++|++|++++|.+...  ..     ....++|++|++++|.++..      ..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            4556666666542      34456667777777777765532  11     12234566666666665431      123


Q ss_pred             ccccCCcEEecCCCccccc--cCCC-----CCCCCcEEEcCCCccCCcc---ccccCCCCCCccEEEccCCCCCChhh--
Q psy10233         83 SHMQLLDTINLSHNFIEKI--ENLS-----CLPVLRTLHLSHNRLKTIE---DIEHLKDCPLLSIVDVSHNQIEDEEV--  150 (207)
Q Consensus        83 ~~~~~L~~L~l~~~~~~~~--~~~~-----~~~~L~~L~l~~n~i~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~--  150 (207)
                      ..+++|++|++++|.++..  ..+.     ..++|+.|++++|.+++.+   ....+..+++|++|++++|.+.+...  
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            4456666777766665432  1111     2346666666666655421   11233445566666666665554321  


Q ss_pred             --HHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        151 --IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       151 --~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                        +..+..+++|+.|++++|.+++.........+..+++|++|+++.
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence              111223555666666666554332222222345556666665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=3.9e-14  Score=115.18  Aligned_cols=156  Identities=15%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             cCCCCCCEEEeecCCccCc--cCCc-----cCCCCCEEEeecCccccc------cCCccccCCcEEecCCCccccc----
Q psy10233         39 EEYTGLKCLWLENNGISKI--ENLD-----AQTEMRSIYMHHNLVKVM------ENLSHMQLLDTINLSHNFIEKI----  101 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~~--~~~~-----~l~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~~~~~~~----  101 (207)
                      ..+++|+.|++++|.+...  ..+.     ..++|++|++++|.++..      ..+..+++|++|++++|.++..    
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            3445555555555554432  1111     133555555555554331      1233455566666666655432    


Q ss_pred             --cC-CCCCCCCcEEEcCCCccCCcc---ccccCCCCCCccEEEccCCCCCChhhHHHhc-----cCCCCcEEEcCCCcc
Q psy10233        102 --EN-LSCLPVLRTLHLSHNRLKTIE---DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG-----AMPELRVLTLSHNPC  170 (207)
Q Consensus       102 --~~-~~~~~~L~~L~l~~n~i~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~L~~l~l~~n~~  170 (207)
                        +. ...+++|+.|++++|.++..+   ....+..+++|++|++++|.+.+.. +..+.     ..++|+.|++++|.+
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCC
Confidence              11 123455666666666554421   0112333455555555555554321 11111     113444555555544


Q ss_pred             ccchhhHHHHHHHhCCcceeccCcc
Q psy10233        171 VGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       171 ~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      .+.........+..+++|+.|+++.
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             chHHHHHHHHHHhhCCCccEEEccC
Confidence            4332222222344455555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=1.7e-13  Score=117.64  Aligned_cols=116  Identities=21%  Similarity=0.283  Sum_probs=99.7

Q ss_pred             CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCcc
Q psy10233         59 NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLS  136 (207)
Q Consensus        59 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~  136 (207)
                      .+..++.|+.|++++|.+..++ .+..+++|++|+|++|.++.+| .+..+++|+.|++++|.++.++.  .+..+++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA--ELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS--SGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh--hhcCCCCCC
Confidence            3778899999999999997664 4678999999999999999876 48889999999999999987644  688899999


Q ss_pred             EEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233        137 IVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR  178 (207)
Q Consensus       137 ~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  178 (207)
                      .|+|++|.++.  +|..++.+++|+.|++++|.+.+.+|...
T Consensus       297 ~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCCCc--cChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            99999999986  57678999999999999999998777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=3.3e-12  Score=90.48  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             CCEEEeecCCccCccCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233         44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR  119 (207)
Q Consensus        44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~  119 (207)
                      .+.+++++|.+..+|.-. .+++++|++++|.++.++  .+..+++|++|++++|.++.++.  +..+++|+.|++++|.
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            356666666666655311 255666666666655442  24555555555555555555432  3445555555555555


Q ss_pred             cCCccccccCCCCCCccEEEccCCCCC
Q psy10233        120 LKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus       120 i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                      +++++. ..+..+++|+.|++++|.+.
T Consensus        90 l~~~~~-~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPR-GAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence            554333 33444555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=1.1e-11  Score=87.71  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             CCCEEEeecCccccccCCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccC
Q psy10233         65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH  142 (207)
Q Consensus        65 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~  142 (207)
                      ..+.+++++|.++.++.- -.+++++|++++|.++.+ + .+..+++|+.|++++|.+++++. ..+..+++|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCC
Confidence            356777777777665531 136777888888887776 3 36677788888888888777544 4567777888888888


Q ss_pred             CCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233        143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       143 n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      |.++.. .+..+..+++|+.|++++|++.+..+
T Consensus        88 N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSI-PRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEe-CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            887764 24456777888888888887765543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=1.5e-11  Score=87.50  Aligned_cols=100  Identities=18%  Similarity=0.302  Sum_probs=60.7

Q ss_pred             CEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233         45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR  119 (207)
Q Consensus        45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~  119 (207)
                      +.++++++.+..+|. +.  ++|++|++++|.++.++  .+..+++|++|++++|.++.+|.  +..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            566677766666654 32  56666666666665442  25566666666666666666542  4556666666666666


Q ss_pred             cCCccccccCCCCCCccEEEccCCCCCC
Q psy10233        120 LKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      ++.++. ..+..+++|+.|++++|.+..
T Consensus        93 l~~l~~-~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKSIPR-GAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCT-TTTTTCTTCSEEECCSSCBCT
T ss_pred             cceeCH-HHhccccCCCEEEeCCCCccc
Confidence            665433 345566666666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=1.1e-11  Score=88.19  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=89.4

Q ss_pred             CCEEEeecCccccccC-CccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccC
Q psy10233         66 MRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH  142 (207)
Q Consensus        66 L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~  142 (207)
                      -+.+++++|.++.++. +  .++|+.|++++|.++.+ + .+..+++|+.|++++|.+++++. ..+..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence            4789999999977765 3  37899999999999888 3 47889999999999999998655 5678899999999999


Q ss_pred             CCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233        143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI  174 (207)
Q Consensus       143 n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  174 (207)
                      |.++.. .+..+..+++|+.|++++|++.+..
T Consensus        91 N~l~~l-~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSI-PRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCC-CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             Ccccee-CHHHhccccCCCEEEeCCCCccccc
Confidence            999975 3456889999999999999987543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.32  E-value=2e-11  Score=96.07  Aligned_cols=165  Identities=16%  Similarity=0.148  Sum_probs=105.6

Q ss_pred             CCCeEEeecCCC-cCcc--CccCCCCCCE-EEeecCCccCcc--CCccCCCCCEEEeecCccc-----------------
Q psy10233         21 LNDVLYLHFKGY-TVIE--NLEEYTGLKC-LWLENNGISKIE--NLDAQTEMRSIYMHHNLVK-----------------   77 (207)
Q Consensus        21 ~~~~l~l~~~~~-~~~~--~l~~l~~L~~-L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~-----------------   77 (207)
                      ..+.+++++|.+ +.++  .+.+++++.. +.+.+|.+..++  .+..+++|++|++++|.++                 
T Consensus        55 ~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~  134 (350)
T 4ay9_X           55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD  134 (350)
T ss_dssp             TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE
T ss_pred             CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhh
Confidence            345566666664 2222  3445555443 344455555542  2455556666666555442                 


Q ss_pred             --------ccc--CCccc-cCCcEEecCCCcccccc-CCCCCCCCcEEEcCC-CccCCccccccCCCCCCccEEEccCCC
Q psy10233         78 --------VME--NLSHM-QLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPLLSIVDVSHNQ  144 (207)
Q Consensus        78 --------~~~--~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~-n~i~~~~~~~~l~~~~~L~~L~l~~n~  144 (207)
                              .++  .+..+ ..++.|++++|.++.++ ......+++.+++++ |.++.++. ..+..+++|+.|++++|.
T Consensus       135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR  213 (350)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC
T ss_pred             hccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC
Confidence                    221  13333 35778999999998874 455667899999975 67777655 678899999999999999


Q ss_pred             CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++..  +.  ..+.+|+.|.+.++.-...+|.     +.++++|+.+++.+
T Consensus       214 l~~l--p~--~~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          214 IHSL--PS--YGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCC--CS--SSCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred             cCcc--Ch--hhhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence            9974  32  2356677777766665557775     56788888877654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1e-12  Score=104.32  Aligned_cols=154  Identities=19%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             CCeEEeecCCCcCc--cC----cc-CCCCCCEEEeecCCccCc--cCC-ccCCCCCEEEeecCcccccc--CC-----cc
Q psy10233         22 NDVLYLHFKGYTVI--EN----LE-EYTGLKCLWLENNGISKI--ENL-DAQTEMRSIYMHHNLVKVME--NL-----SH   84 (207)
Q Consensus        22 ~~~l~l~~~~~~~~--~~----l~-~l~~L~~L~l~~~~l~~~--~~~-~~l~~L~~L~l~~n~~~~~~--~~-----~~   84 (207)
                      .+.++++.|.+...  ..    +. ..++|+.|++++|.+...  ..+ ..+++|++|++++|.+....  .+     ..
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            44566777666421  11    12 225777777777776542  222 23566777888877764321  11     23


Q ss_pred             ccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh---hHH
Q psy10233         85 MQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE---VIE  152 (207)
Q Consensus        85 ~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~---~~~  152 (207)
                      .++|++|++++|.++..      ..+...++|+.|++++|.+++.+.   ...+...++|+.|++++|.+++.+   +..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            56677888888777542      123456777888888887765321   123455667788888888777543   223


Q ss_pred             HhccCCCCcEEEcCCCccccchh
Q psy10233        153 VFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       153 ~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      .+...+.|+.|++++|.+.+...
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHhCCCCCEEeccCCCCCHHHH
Confidence            44456778888888887764433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=1.2e-10  Score=90.84  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=23.7

Q ss_pred             CCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcc
Q psy10233         41 YTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLV   76 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~   76 (207)
                      +++|+.+.+.+ .+..++  .|..+++|+.++++.|.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i  136 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA  136 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence            77777777777 666653  367777777777777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=9.9e-11  Score=91.86  Aligned_cols=98  Identities=22%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             EEeecC-CCcCccCccCCCCCCEEEeec-CCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcc
Q psy10233         25 LYLHFK-GYTVIENLEEYTGLKCLWLEN-NGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFI   98 (207)
Q Consensus        25 l~l~~~-~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~   98 (207)
                      ++++.+ +++.++.+..+++|+.|++++ |.+..++.  |..+++|++|++++|.++.++  .|..+++|+.|+|++|.+
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            456665 665554466777777777774 77776642  666777777777777765543  356667777777777776


Q ss_pred             cccc-CCCCCCCCcEEEcCCCccCC
Q psy10233         99 EKIE-NLSCLPVLRTLHLSHNRLKT  122 (207)
Q Consensus        99 ~~~~-~~~~~~~L~~L~l~~n~i~~  122 (207)
                      +.+| .......|+.|++.+|.+..
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCccC
Confidence            6653 22222236666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.9e-10  Score=90.18  Aligned_cols=101  Identities=16%  Similarity=0.291  Sum_probs=78.8

Q ss_pred             CEEEeecC-CccCccCCccCCCCCEEEeec-Ccccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCC
Q psy10233         45 KCLWLENN-GISKIENLDAQTEMRSIYMHH-NLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHN  118 (207)
Q Consensus        45 ~~L~l~~~-~l~~~~~~~~l~~L~~L~l~~-n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n  118 (207)
                      ..++++++ .+..+|.+..+++|++|++++ |.++.++  .|..+++|+.|+|++|.++.++  .+..+++|+.|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            35688887 888887787888899999985 8887664  3788889999999999888773  3677888999999999


Q ss_pred             ccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233        119 RLKTIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      .++.++. ..+..++ |+.|++.+|.+..
T Consensus        91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSW-KTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCS-TTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCH-HHcccCC-ceEEEeeCCCccC
Confidence            8887654 4455554 8888888888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=5.3e-12  Score=100.28  Aligned_cols=156  Identities=15%  Similarity=0.126  Sum_probs=115.8

Q ss_pred             CCCCCEEEeecCCccCcc--CC----c-cCCCCCEEEeecCccccc--cCC-ccccCCcEEecCCCcccccc--C----C
Q psy10233         41 YTGLKCLWLENNGISKIE--NL----D-AQTEMRSIYMHHNLVKVM--ENL-SHMQLLDTINLSHNFIEKIE--N----L  104 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~~~--~~----~-~l~~L~~L~l~~n~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~--~----~  104 (207)
                      ++.|+.|++++|.+....  .+    . ..++|++|++++|.+...  ..+ ..+++|+.|++++|.++..+  .    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467899999999987532  22    2 236899999999988542  223 35678999999999986531  1    2


Q ss_pred             -CCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh---hHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233        105 -SCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELRVLTLSHNPCVGKIKNY  177 (207)
Q Consensus       105 -~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~  177 (207)
                       ...++|+.|++++|.+++.+.   ...+..+++|++|++++|.+++.+   +...+..+++|+.|++++|.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             346889999999999876322   123467889999999999998643   2455677889999999999988655555


Q ss_pred             HHHHHHhCCcceeccCccc
Q psy10233        178 RRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       178 ~~~~~~~~~~L~~L~~~~~  196 (207)
                      ....+..+++|+.||+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHhCCCCCEEeccCC
Confidence            5556778899999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.08  E-value=2.1e-10  Score=95.94  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             CCCCCCEEEeecCCccCcc------CCccCCCCCEEEeecCccccc-----cC-CccccCCcEEecCCCcccccc-----
Q psy10233         40 EYTGLKCLWLENNGISKIE------NLDAQTEMRSIYMHHNLVKVM-----EN-LSHMQLLDTINLSHNFIEKIE-----  102 (207)
Q Consensus        40 ~l~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~l~~n~~~~~-----~~-~~~~~~L~~L~l~~~~~~~~~-----  102 (207)
                      ++++|++|++++|.+....      .+..+++|++|++++|.++..     +. +..+++|+.|++++|.+..++     
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            5666777777766554321      123455666666666655411     11 234556666666655443321     


Q ss_pred             -----------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233        103 -----------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE  159 (207)
Q Consensus       103 -----------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (207)
                                             .+..+++|+.++++++....++  ..+..+++|+.|++++|.+++..+...+..+++
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG--GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH--HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence                                   2233344444444443222221  234455666677777666655444444566666


Q ss_pred             CcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      |+.|+++ +.+.+   .....+...|++|++|++.
T Consensus       320 L~~L~L~-~~~~~---~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          320 LEVLETR-NVIGD---RGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEEE-GGGHH---HHHHHHHHHCTTCCEEEEE
T ss_pred             CCEEecc-CccCH---HHHHHHHHhCCCCCEEEee
Confidence            6666666 22221   1112234556666666555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=2.4e-10  Score=89.13  Aligned_cols=144  Identities=20%  Similarity=0.260  Sum_probs=106.1

Q ss_pred             CCCCCEEEeecCCcc--------------------Ccc--CCcc--------CCCCCEEEeecCcccccc--CCccccCC
Q psy10233         41 YTGLKCLWLENNGIS--------------------KIE--NLDA--------QTEMRSIYMHHNLVKVME--NLSHMQLL   88 (207)
Q Consensus        41 l~~L~~L~l~~~~l~--------------------~~~--~~~~--------l~~L~~L~l~~n~~~~~~--~~~~~~~L   88 (207)
                      +++|+.|++++|.+.                    .++  .|..        +++|+.+++.. .++.++  .|..|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788889999988877                    222  2566        89999999999 776664  48899999


Q ss_pred             cEEecCCCccccccC--CC-------------------------------------------------------------
Q psy10233         89 DTINLSHNFIEKIEN--LS-------------------------------------------------------------  105 (207)
Q Consensus        89 ~~L~l~~~~~~~~~~--~~-------------------------------------------------------------  105 (207)
                      +.++++.|.+..++.  +.                                                             
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            999999886422110  00                                                             


Q ss_pred             -----------------CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc-EEEcCC
Q psy10233        106 -----------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR-VLTLSH  167 (207)
Q Consensus       106 -----------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~l~l~~  167 (207)
                                       .+++|+.+++++|.++.++. ..+..+++|+.+++..| ++.. ....|..+++|+ .+++.+
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc
Confidence                             15688889999888887665 67888889999999887 6654 356778888898 888887


Q ss_pred             CccccchhhHHHHHHHhCCcceeccC
Q psy10233        168 NPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       168 n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                       .+. .++..   .+..|++|+.+++
T Consensus       284 -~l~-~I~~~---aF~~c~~L~~l~l  304 (329)
T 3sb4_A          284 -SVT-AIEFG---AFMGCDNLRYVLA  304 (329)
T ss_dssp             -TCC-EECTT---TTTTCTTEEEEEE
T ss_pred             -cce-EEchh---hhhCCccCCEEEe
Confidence             444 45433   3778888888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.04  E-value=1.5e-10  Score=96.79  Aligned_cols=61  Identities=11%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             CCCCccEEEcc-----------CCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        131 DCPLLSIVDVS-----------HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       131 ~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      .+++|++|+++           .+.+++..+......+++|+.|+++.|.+++..+..   +...+++|+.|++.
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~---l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES---IGTYLKNLCDFRLV  411 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH---HHHHCCSCCEEEEE
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH---HHhhCCCCcEEEEe
Confidence            34555555555           244544434444445566666666555554433322   23346666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.88  E-value=2.4e-09  Score=89.54  Aligned_cols=127  Identities=14%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             cCCCCCEEEeecCccccc--cCCc-cccCCcEEecCCC-cccc--ccC-CCCCCCCcEEEcCCCccCCccc---cccCCC
Q psy10233         62 AQTEMRSIYMHHNLVKVM--ENLS-HMQLLDTINLSHN-FIEK--IEN-LSCLPVLRTLHLSHNRLKTIED---IEHLKD  131 (207)
Q Consensus        62 ~l~~L~~L~l~~n~~~~~--~~~~-~~~~L~~L~l~~~-~~~~--~~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~  131 (207)
                      .+++|++|++++|.+...  ..+. .+++|++|++++| .++.  ++. ...+++|+.|++++|.+++...   ......
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            345666666666654322  1222 4556666666665 3332  222 2245566666666665544221   112234


Q ss_pred             CCCccEEEccCCC--CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceecc
Q psy10233        132 CPLLSIVDVSHNQ--IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD  192 (207)
Q Consensus       132 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~  192 (207)
                      +++|+.|++++|.  +....+...+..+++|+.|++++|...+.++.    .+..+++|+.|+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~  241 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELG  241 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEE
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcc
Confidence            5566666666664  33333334444556666666666532222222    344555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=2.3e-09  Score=84.71  Aligned_cols=133  Identities=13%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             ccCCCCCEEEeecCc-cccccCCccccCCcEEecCCCccccc--cCC--CCCCCCcEEEcCC--Ccc------CCccccc
Q psy10233         61 DAQTEMRSIYMHHNL-VKVMENLSHMQLLDTINLSHNFIEKI--ENL--SCLPVLRTLHLSH--NRL------KTIEDIE  127 (207)
Q Consensus        61 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~~~~~L~~L~l~~--n~i------~~~~~~~  127 (207)
                      ..+|+|+.|.++++. +. ++.+ .+++|+.|++..+.+...  ..+  ..+++|+.|+|+.  +..      ..+...-
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            344566666666552 22 1222 255566666655554321  111  1345566665532  111      0100000


Q ss_pred             cCCCCCCccEEEccCCCCCChhhHHHh--ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        128 HLKDCPLLSIVDVSHNQIEDEEVIEVF--GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       128 ~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ....+++|+.|++++|.+.+......+  ..+++|+.|+++.|.+.+.-.......+..+++|+.|+++.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            112355666666666655532111111  13456666666666554432222211224455666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.86  E-value=5.4e-09  Score=78.96  Aligned_cols=92  Identities=25%  Similarity=0.387  Sum_probs=69.0

Q ss_pred             CCCCCcEEEcCCCccCCcccc-ccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh---hHHHHH
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDI-EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK---NYRRMF  181 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~  181 (207)
                      .+++|+.|++++|.++++... ..+..+++|+.|+|++|.+++......+..+ +|+.|++++|++.+.+|   .++..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            456788888888887775432 2345678899999999988875333444444 89999999999987554   566678


Q ss_pred             HHhCCcceeccCcccCH
Q psy10233        182 INLCVNLRHLDDYPVFD  198 (207)
Q Consensus       182 ~~~~~~L~~L~~~~~~~  198 (207)
                      +..+++|+.||...+++
T Consensus       247 l~~~P~L~~LDg~~v~p  263 (267)
T 3rw6_A          247 RERFPKLLRLDGHELPP  263 (267)
T ss_dssp             HHHCTTCCEESSCBCCC
T ss_pred             HHHCcccCeECCcCCCC
Confidence            99999999999987754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.83  E-value=1e-09  Score=91.79  Aligned_cols=64  Identities=13%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             CCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233        107 LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC  170 (207)
Q Consensus       107 ~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~  170 (207)
                      +++|+.|++++|.+++.........+++|+.|++++|.+++......+..+++|+.|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            3445555555554433211111133455555555555554332223333445555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=7.7e-09  Score=74.05  Aligned_cols=111  Identities=11%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             ccCCCCCEEEeecC-ccccc------cCCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc--
Q psy10233         61 DAQTEMRSIYMHHN-LVKVM------ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED--  125 (207)
Q Consensus        61 ~~l~~L~~L~l~~n-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~--  125 (207)
                      ...+.|++|++++| .+..-      ..+...++|++|++++|.++..      ..+...++|+.|++++|.|.+.+.  
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            44566777777777 66321      2244556677777777766532      123334566777777776654221  


Q ss_pred             -cccCCCCCCccEEEc--cCCCCCChh---hHHHhccCCCCcEEEcCCCccc
Q psy10233        126 -IEHLKDCPLLSIVDV--SHNQIEDEE---VIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       126 -~~~l~~~~~L~~L~l--~~n~l~~~~---~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                       ...+...++|++|++  ++|.+.+.+   +...+...+.|+.|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             123455566667777  666666533   2334445566667777666653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=3.3e-08  Score=78.08  Aligned_cols=138  Identities=15%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccc--cCC--ccccCCcEEecCCC--c------cccc-cCC
Q psy10233         38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVM--ENL--SHMQLLDTINLSHN--F------IEKI-ENL  104 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~--~~~--~~~~~L~~L~l~~~--~------~~~~-~~~  104 (207)
                      +..+++|+.|+++++.-..++.+. +++|++|++..+.+..-  ..+  ..+++|+.|+|+.+  .      +..+ +.+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             HhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            357799999999987322344443 89999999999887432  223  36899999998532  1      2122 122


Q ss_pred             --CCCCCCcEEEcCCCccCCccc--cccCCCCCCccEEEccCCCCCChhhHHH---hccCCCCcEEEcCCCccccchhh
Q psy10233        105 --SCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEV---FGAMPELRVLTLSHNPCVGKIKN  176 (207)
Q Consensus       105 --~~~~~L~~L~l~~n~i~~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~  176 (207)
                        ..+++|+.|++.+|.+.+...  ......+++|++|+++.|.+.+.+....   +..+++|+.|++++|.+++..-.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence              347899999999998764221  1112457899999999999987542222   24578999999999987754333

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=6.7e-09  Score=74.37  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=85.8

Q ss_pred             CccccCCcEEecCCC-ccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh--
Q psy10233         82 LSHMQLLDTINLSHN-FIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE--  149 (207)
Q Consensus        82 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~--  149 (207)
                      +...++|++|++++| .++..      ..+...++|+.|++++|.+.+.+.   ...+...++|++|++++|.+.+.+  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456788999999998 77642      235566889999999998865322   123455678999999999988754  


Q ss_pred             -hHHHhccCCCCcEEEc--CCCccccchhhHHHHHHHhCCcceeccCcccCH
Q psy10233        150 -VIEVFGAMPELRVLTL--SHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFD  198 (207)
Q Consensus       150 -~~~~~~~~~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~  198 (207)
                       +...+...+.|+.|++  ++|.+.+.........+...++|+.|+++...-
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             2345566778999999  888887665566666778888999998876543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=1.2e-07  Score=66.97  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             CCcEEecCCCccccc--cCCCCCCCCcEEEcCCCc-cCCccccccCCCC----CCccEEEccCCC-CCChhhHHHhccCC
Q psy10233         87 LLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDC----PLLSIVDVSHNQ-IEDEEVIEVFGAMP  158 (207)
Q Consensus        87 ~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~  158 (207)
                      .|++|+++++.++..  ..+..+++|+.|++++|. +++.+. ..+..+    ++|++|++++|. +++.+ ...+..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence            455666666555432  345566777777777774 554222 334332    468888888874 77664 44556788


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLR  189 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~  189 (207)
                      +|+.|++++++-.++..-....+...+|+++
T Consensus       140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            8888888888744333333334566777775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.49  E-value=5.1e-07  Score=72.27  Aligned_cols=57  Identities=16%  Similarity=0.160  Sum_probs=32.0

Q ss_pred             CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCC
Q psy10233         37 NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSH   95 (207)
Q Consensus        37 ~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~   95 (207)
                      .+.++.+|+.+++.+|.+..++.  |. ..+|+.+.+..+ ++.++  .|..+++|+.+.+..
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            34566667777776666655532  33 355666666533 33332  355666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=3e-07  Score=69.42  Aligned_cols=158  Identities=19%  Similarity=0.240  Sum_probs=96.8

Q ss_pred             HHHHHHhhhcCCccCCCCCCeEEeecCC---C---cCc--cCccCCCCCCEEEeecCCccC---ccCCccCCCCCE--EE
Q psy10233          4 ASLRKICKDNKLYLTPSLNDVLYLHFKG---Y---TVI--ENLEEYTGLKCLWLENNGISK---IENLDAQTEMRS--IY   70 (207)
Q Consensus         4 ~~l~~~c~~~~~~~~~~~~~~l~l~~~~---~---~~~--~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~--L~   70 (207)
                      .....+|.|.++.+++...++.-+...+   .   ..+  ..+..++.  .+.-+++.-..   +..+...+.|..  ++
T Consensus        72 ~~A~~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~  149 (267)
T 3rw6_A           72 STASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNID  149 (267)
T ss_dssp             HHHHHHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCC
T ss_pred             HHHHHHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCcc
Confidence            3445689999999988754442222211   0   001  11111111  12222222222   122444444544  56


Q ss_pred             eecCccccccC-----CccccCCcEEecCCCccccccCCC----CCCCCcEEEcCCCccCCccccccCCCCCCccEEEcc
Q psy10233         71 MHHNLVKVMEN-----LSHMQLLDTINLSHNFIEKIENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS  141 (207)
Q Consensus        71 l~~n~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~  141 (207)
                      ++.|....++.     ...+++|+.|+|++|.+..++.+.    .+++|+.|+|++|.+++......+..+ +|++|+++
T Consensus       150 l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~  228 (267)
T 3rw6_A          150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLD  228 (267)
T ss_dssp             CCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECT
T ss_pred             ccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEcc
Confidence            66675443332     146789999999999998875433    689999999999999887555556655 89999999


Q ss_pred             CCCCCCh-----h-hHHHhccCCCCcEEE
Q psy10233        142 HNQIEDE-----E-VIEVFGAMPELRVLT  164 (207)
Q Consensus       142 ~n~l~~~-----~-~~~~~~~~~~L~~l~  164 (207)
                      +|.+.+.     . ....+..+|+|+.||
T Consensus       229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          229 GNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999751     0 134677889999887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.39  E-value=1.3e-06  Score=69.91  Aligned_cols=86  Identities=9%  Similarity=0.124  Sum_probs=56.6

Q ss_pred             CCccccCCcEEecCCCccc-----cc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHH
Q psy10233         81 NLSHMQLLDTINLSHNFIE-----KI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEV  153 (207)
Q Consensus        81 ~~~~~~~L~~L~l~~~~~~-----~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  153 (207)
                      .|..|++|+.+.+.++.+.     .+  ..+..+++|+.+.+.+ .++.++. ..+..+++|+.+.+..+ ++.. ....
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-~aF~~c~~L~~l~lp~~-l~~I-~~~a  341 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-GLLGGNRKVTQLTIPAN-VTQI-NFSA  341 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTTTCCSCCEEEECTT-CCEE-CTTS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-hhhcCCCCccEEEECcc-ccEE-cHHh
Confidence            3667777777777776543     23  2466667788877774 3555444 56777788888888554 5543 2456


Q ss_pred             hccCCCCcEEEcCCCccc
Q psy10233        154 FGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       154 ~~~~~~L~~l~l~~n~~~  171 (207)
                      |..+ +|+.+++.+|...
T Consensus       342 F~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             SSSS-CCCEEEECCSSCC
T ss_pred             CCCC-CCCEEEEcCCCCc
Confidence            6777 7888888877654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.37  E-value=2.1e-07  Score=65.72  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=66.6

Q ss_pred             CCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccC----CCCcEEEcCCCc-cccchhhHHHHH
Q psy10233        108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAM----PELRVLTLSHNP-CVGKIKNYRRMF  181 (207)
Q Consensus       108 ~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~~~~~~~  181 (207)
                      ..|+.++++++.+++.+. ..+..+++|++|++++|. +++.. ...+..+    ++|+.|++++|. +++.   ... .
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~---Gl~-~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDK---GII-A  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHH---HHH-H
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHH---HHH-H
Confidence            579999999999877444 677899999999999995 87764 4445553    589999999997 4432   222 3


Q ss_pred             HHhCCcceeccCcccCHHh
Q psy10233        182 INLCVNLRHLDDYPVFDKD  200 (207)
Q Consensus       182 ~~~~~~L~~L~~~~~~~~~  200 (207)
                      +.+|++|++|+++.+....
T Consensus       135 L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCC
T ss_pred             HhcCCCCCEEECCCCCCCC
Confidence            6789999999998876443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.02  E-value=1.5e-05  Score=57.29  Aligned_cols=107  Identities=12%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             CCCCCEEEeecC-ccccc------cCCccccCCcEEecCCCccccc--c----CCCCCCCCcEEEcCCCccCCccc---c
Q psy10233         63 QTEMRSIYMHHN-LVKVM------ENLSHMQLLDTINLSHNFIEKI--E----NLSCLPVLRTLHLSHNRLKTIED---I  126 (207)
Q Consensus        63 l~~L~~L~l~~n-~~~~~------~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~~~L~~L~l~~n~i~~~~~---~  126 (207)
                      -+.|+.|+++++ .+...      ..+..-++|+.|+|++|.++..  .    .+..-+.|+.|+|++|.|...+.   .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            355666666654 54321      2234445566666666666532  1    12233556666666666654221   1


Q ss_pred             ccCCCCCCccEEEccCC---CCCCh---hhHHHhccCCCCcEEEcCCCc
Q psy10233        127 EHLKDCPLLSIVDVSHN---QIEDE---EVIEVFGAMPELRVLTLSHNP  169 (207)
Q Consensus       127 ~~l~~~~~L~~L~l~~n---~l~~~---~~~~~~~~~~~L~~l~l~~n~  169 (207)
                      ..+...+.|+.|++++|   .+.+.   .+.+.+...+.|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            23445555666666543   22321   123344455566666665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.58  E-value=5.1e-05  Score=54.44  Aligned_cols=117  Identities=14%  Similarity=0.092  Sum_probs=82.7

Q ss_pred             ccccCCcEEecCCC-ccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChhhH-
Q psy10233         83 SHMQLLDTINLSHN-FIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEEVI-  151 (207)
Q Consensus        83 ~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~-  151 (207)
                      ..-+.|++|+|+++ .++..      ..+..-..|+.|++++|.+.+.+.   ...++..+.|++|+|+.|.|.+.+.. 
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45677999999985 77542      235566889999999999876332   23456678899999999999875433 


Q ss_pred             --HHhccCCCCcEEEcCCC---ccccchhhHHHHHHHhCCcceeccCcccCHH
Q psy10233        152 --EVFGAMPELRVLTLSHN---PCVGKIKNYRRMFINLCVNLRHLDDYPVFDK  199 (207)
Q Consensus       152 --~~~~~~~~L~~l~l~~n---~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~  199 (207)
                        +.+...+.|+.|++++|   .+...........+..-++|..|++......
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              34455668999999865   4454444555667788889998888764433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.39  E-value=0.0015  Score=51.74  Aligned_cols=124  Identities=16%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             CCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233         59 NLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL  135 (207)
Q Consensus        59 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L  135 (207)
                      .|..+..|+.+.+..+..... ..|..++.|+.+.+.. .+..++  .+..+.+|+.+.+..+ ++.++. ..+..+.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence            477788899998876644333 3477888999998864 444443  4777789999998764 455444 678889999


Q ss_pred             cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +.+.+..+ ++.. ....|.+|++|+.+++.++...  . .    .+..|..|+.+.+.
T Consensus       337 ~~i~ip~s-v~~I-~~~aF~~C~~L~~i~~~~~~~~--~-~----~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          337 ERIAIPSS-VTKI-PESAFSNCTALNNIEYSGSRSQ--W-N----AISTDSGLQNLPVA  386 (394)
T ss_dssp             CEEEECTT-CCBC-CGGGGTTCTTCCEEEESSCHHH--H-H----TCBCCCCC------
T ss_pred             CEEEECcc-cCEE-hHhHhhCCCCCCEEEECCceee--h-h----hhhccCCCCEEEeC
Confidence            99999755 5554 2567889999999998877521  1 1    24567777776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.34  E-value=0.0015  Score=51.84  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             CCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCC
Q psy10233         41 YTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSH  117 (207)
Q Consensus        41 l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  117 (207)
                      ...|+.+.+... +..+  ..+..+..++.+.+..+..... ..+..+..++.+......+.. ..+....+|+.+.+..
T Consensus       229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECT
T ss_pred             cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccccccccccc
Confidence            356666666543 2222  2355666777777765543322 124444555544443332211 1233344444444433


Q ss_pred             CccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233        118 NRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN  168 (207)
Q Consensus       118 n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n  168 (207)
                      + ++.++. ..+..+.+|+.+++..+ ++.. ....|.+|.+|+.+.+..+
T Consensus       307 ~-i~~I~~-~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          307 S-VKFIGE-EAFESCTSLVSIDLPYL-VEEI-GKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             T-CCEECT-TTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCEECCCTT
T ss_pred             c-cceech-hhhcCCCCCCEEEeCCc-ccEE-hHHhccCCCCCCEEEECcc
Confidence            2 222222 34444455555555332 3322 1233444555555554433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.33  E-value=0.0023  Score=50.72  Aligned_cols=142  Identities=13%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             ccCCCCCCEEEeecCCccCc-cCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc--cCCCCCCCCcEEE
Q psy10233         38 LEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLH  114 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~  114 (207)
                      +..+..++.+.+..+...-- ..+..+..++.+....+.+. -..+..+.+|+.+.+..+ +..+  ..+..+.+|+.++
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence            45667788888776543322 34677777888777665321 123667888888888664 4444  2466778888888


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceec
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL  191 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L  191 (207)
                      +..+ ++.++. ..+..+.+|+.+.+..+ ++.. ....|.+|++|+.+++..+- . .+..    -+..|.+|+.+
T Consensus       327 lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~~-~-~~~~----~F~~c~~L~~I  393 (394)
T 4fs7_A          327 LPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKRL-E-QYRY----DFEDTTKFKWI  393 (394)
T ss_dssp             CCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGGG-G-GGGG----GBCTTCEEEEE
T ss_pred             eCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCCC-E-Ehhh----eecCCCCCcEE
Confidence            8654 555444 67888888988888776 5544 25567888889888886552 1 2222    25677777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.09  E-value=0.0068  Score=47.60  Aligned_cols=103  Identities=25%  Similarity=0.299  Sum_probs=48.3

Q ss_pred             CccccCCcEEecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233         82 LSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE  159 (207)
Q Consensus        82 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (207)
                      +..+..|+.+.+..+ ++.+  ..+.....|+.+.+..+ +..++. ..+..+.+|+.+.+..+.++.. ....|.++.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~-~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY-LLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT-TTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc-ccccccccccccccccccccee-hhhhhcCCCC
Confidence            445555555555443 2222  12444455555555432 222222 3455556666666655555443 1344555566


Q ss_pred             CcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233        160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      |+.+.+..+ +. .+...   .+..|.+|+.+.+
T Consensus       312 L~~i~lp~~-l~-~I~~~---aF~~C~~L~~i~i  340 (379)
T 4h09_A          312 LSSVTLPTA-LK-TIQVY---AFKNCKALSTISY  340 (379)
T ss_dssp             CCEEECCTT-CC-EECTT---TTTTCTTCCCCCC
T ss_pred             CCEEEcCcc-cc-EEHHH---HhhCCCCCCEEEE
Confidence            666665433 21 23322   2445555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.04  E-value=0.0054  Score=48.19  Aligned_cols=124  Identities=16%  Similarity=0.239  Sum_probs=86.7

Q ss_pred             cCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc--cCCCCCCCCcE
Q psy10233         39 EEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRT  112 (207)
Q Consensus        39 ~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~  112 (207)
                      ....+++.+.+..+ +...  ..+..+..|+.+.+..+ ++.++  .+..+.+|+.+.+..+ +..+  ..+..+.+|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34456666666543 2222  23667788888888766 44332  4678888999988654 4344  34677789999


Q ss_pred             EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233        113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN  168 (207)
Q Consensus       113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n  168 (207)
                      +.+.++.++.++. ..+..+.+|+.+.+..+ ++.. ....|.+|.+|+.+.+..+
T Consensus       291 i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          291 VVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTI-QVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccceehh-hhhcCCCCCCEEEcCcc-ccEE-HHHHhhCCCCCCEEEECCc
Confidence            9998888877655 67889999999999765 5543 2456788899999888655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.01  E-value=0.0062  Score=48.21  Aligned_cols=106  Identities=14%  Similarity=0.330  Sum_probs=75.8

Q ss_pred             CCccccCCcEEecCCCcccc-ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233         81 NLSHMQLLDTINLSHNFIEK-IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE  159 (207)
Q Consensus        81 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (207)
                      .|..++.|+.+.+..+.... -..+.....|+.+.+.. .++.++. ..+..+.+|+.+.+..+ ++.. ....|..|.+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPE-SVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTT
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC-cccccCc-eeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCC
Confidence            47788999999887653321 13567778899998864 4555444 67888999999999765 5543 2557788999


Q ss_pred             CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      |+.+.+-.+ +. .+...   .+..|.+|+.+++..
T Consensus       336 L~~i~ip~s-v~-~I~~~---aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          336 LERIAIPSS-VT-KIPES---AFSNCTALNNIEYSG  366 (394)
T ss_dssp             CCEEEECTT-CC-BCCGG---GGTTCTTCCEEEESS
T ss_pred             CCEEEECcc-cC-EEhHh---HhhCCCCCCEEEECC
Confidence            999999755 33 45443   378999999887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.0052  Score=40.89  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=34.2

Q ss_pred             EEecCCCccc--cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233         90 TINLSHNFIE--KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus        90 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                      .++.++++++  .+|.- -.++++.|+|++|.|+.++. ..+..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            5666666666  55421 12457777777777766544 45666667777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.57  E-value=0.0062  Score=40.51  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             EEEcCCCccC--CccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233        112 TLHLSHNRLK--TIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus       112 ~L~l~~n~i~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                      .++.+++.++  .++.  .+  .++++.|+|++|.|+.. ....+..+++|+.|++++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCeec
Confidence            5666666665  4432  11  13577777777777765 25566677777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-13
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-11
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-11
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 24  VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
            L L     + +  L   T L  L L  N IS I  L   T + ++ ++ N ++ +  +S
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 84  HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
           +++ L  + L  N I  I  +S L  L+ L  ++N+   + D+  L +   ++ +   HN
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK---VSDVSSLANLTNINWLSAGHN 361

Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
           QI D   +     +  +  L L+  
Sbjct: 362 QISD---LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 23  DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL 82
           D L L+      I  L   T L  L L NN IS +  L   T++  + +  N +  +  L
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281

Query: 83  SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
           + +  L  + L+ N +E I  +S L  L  L L  N +  I  +  L     L  +  ++
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFAN 338

Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
           N++ D   +     +  +  L+  HN             +     +  L 
Sbjct: 339 NKVSD---VSSLANLTNINWLSAGHNQISDLTP------LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 46  CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
            L   NN IS I  L   T +  + ++ N +K +  L+ +  L  ++L++N I  +  LS
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 260

Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLK-------------------DCPLLSIVDVSHNQIE 146
            L  L  L L  N++  I  +  L                    +   L+ + +  N I 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 147 DEEVIEVFGAMPELRVLTLSHN 168
           D   I    ++ +L+ L  ++N
Sbjct: 321 D---ISPVSSLTKLQRLFFANN 339

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 15/81 (18%), Positives = 35/81 (43%)

Query: 50  ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
           ++  I++I    A  E     +    V    + + +  + T+      I+ I+ +  L  
Sbjct: 8   QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN 67

Query: 110 LRTLHLSHNRLKTIEDIEHLK 130
           L  ++ S+N+L  I  +++L 
Sbjct: 68  LTQINFSNNQLTDITPLKNLT 88

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 92  NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
            L    +    + + L  + TL      +K+I+ +E+L +   L+ ++ S+NQ+ D   I
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTD---I 81

Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185
                + +L  + +++N             +   
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 115

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 12/72 (16%), Positives = 31/72 (43%)

Query: 47  LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
             L    ++   +     ++ ++      +K ++ + ++  L  IN S+N +  I  L  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 86

Query: 107 LPVLRTLHLSHN 118
           L  L  + +++N
Sbjct: 87  LTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 48  WLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCL 107
               N ++ ++ L   T +  + +  N V  +  L+ +  L+++  ++N I  I  L  L
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
             L  L L+ N+LK I  +  L +   L   D+++NQI +   +     + +L  L L  
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQISN---LAPLSGLTKLTELKLGA 272

Query: 168 NPCVGKI 174
           N      
Sbjct: 273 NQISNIS 279

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 1e-13
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 49  LENNGISKIENLDAQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEKIENLSCL 107
           L    I +          R + +    + V+ENL + +   D I+ S N I K++    L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
             L+TL +++NR+  I +    +  P L+ + +++N + +   ++   ++  L  L +  
Sbjct: 63  RRLKTLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 168 NPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
           NP     K+YR   I     +R LD   V  K+R+ AE  
Sbjct: 122 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 45  KCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIEN 103
           + L L +  ++ + +L+    +  + + HN L  +   L+ ++ L+ +  S N +E ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--EVFGAMPELR 161
           ++ LP L+ L L +NRL+    I+ L  CP L ++++  N +  EE I   +   +P + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 162 VL 163
            +
Sbjct: 121 SI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 1e-11
 Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 67  RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDI 126
           R +++ H  + V+ +L  + L+  ++LSHN +  +     L  LR L +       +E++
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV 58

Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
           + + + P L  + + +N+++    I+   + P L +L L  N      +  +     +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLP 117

Query: 187 NLRHL 191
           ++  +
Sbjct: 118 SVSSI 122

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 16/187 (8%)

Query: 35  IENLEEYTGLKCLWLENNG----ISKIENLDAQ----TEMRSIYMHHNLVKVMENLSHMQ 86
           I   EE   +     E       I  IE +DA        + + +  N ++ + +LS M+
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70

Query: 87  LLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
            L  ++L  N I+KIENL  +                             ++ +S+N+I 
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNL--RVLYMSNNKIT 128

Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKD 200
           +   I+   A+ +L  L L+ NP     K       YR   +    NL+ LD  PV   +
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDE 188

Query: 201 RKCAEAW 207
           R+ A   
Sbjct: 189 REQANVA 195

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 49  LENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC- 106
           L+   + +++  +  + +     +    ++   +L    +   +N   +    +  +   
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63

Query: 107 LPVLRTLHLSHNRLKTIEDIEH-LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
           +P L +L+LS+NRL  ++D+   ++  P L I+++S N+++ E  ++      +L  L L
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELWL 122

Query: 166 SHNPCVGKIK---NYRRMFINLCVNLRHLDDYPVF 197
             N      +    Y          L  LD + + 
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 46  CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
            L+L+ N I+ I  L   T ++ + + +  V  +  L+++  L T+    N I  I  L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
            LP L  +HL +N+   I D+  L +   L IV +++
Sbjct: 193 SLPNLIEVHLKNNQ---ISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 46  CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
            L L +  I+ +  L   + ++ +Y+  N +  +  L+ +  L  +++ +  +  +  L+
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
            L  L TL    N++  I  +  L   P L  V + +NQI D   +        L ++TL
Sbjct: 171 NLSKLTTLKADDNKISDISPLASL---PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224

Query: 166 SH 167
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 21/93 (22%), Positives = 42/93 (45%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           LYL     T I  L   T L+ L + N  +S +  L   +++ ++    N +  +  L+ 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSH 117
           +  L  ++L +N I  +  L+    L  + L++
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 22/161 (13%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           +  +      ++ ++    +  L+L  N ++ I+ L     +  +++  N VK + +L  
Sbjct: 51  IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD 110

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK-------------------TIED 125
           ++ L +++L HN I  I  L  LP L +L+L +N++                     I D
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166
           I  L     L  + +S N I D   +     +  L VL L 
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 38/81 (46%)

Query: 54  ISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTL 113
           I +I + DA  E     +    V      + +  +D I  +++ I+ ++ +  LP +  L
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 114 HLSHNRLKTIEDIEHLKDCPL 134
            L+ N+L  I+ + +LK+   
Sbjct: 74  FLNGNKLTDIKPLANLKNLGW 94

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 25  LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
           L     G   I+ +E    L  +   NN ++ I  L   T++  I M++N +  +  L++
Sbjct: 45  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 104

Query: 85  MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKT-------------------IED 125
           +  L  + L +N I  I+ L  L  L  L LS N +                     + D
Sbjct: 105 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD 164

Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
           ++ L +   L  +D+S N++ D   I V   +  L  L
Sbjct: 165 LKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESL 199

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 42  TGLKCLWLENNGISK-----IENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
             L  L L+ N I+K     ++ L+   ++   +   + V      +   L +    ++ 
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 97  FIEKIENLSCLPVLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEV 150
            ++    L+    ++ ++L +N +  I         +       S V +  N ++  E+
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 65  EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIE 124
           E+       ++ + + +       +   L+ +  E        P L  L++S+N+L  + 
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300

Query: 125 DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
                   P L  +  S N +      EV      L+ L + +NP
Sbjct: 301 A-----LPPRLERLIASFNHLA-----EVPELPQNLKQLHVEYNP 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.44
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.22
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.8e-22  Score=137.94  Aligned_cols=149  Identities=25%  Similarity=0.334  Sum_probs=117.3

Q ss_pred             CccCCccCCCCCEEEeecCccccccCC-ccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCC
Q psy10233         56 KIENLDAQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL  134 (207)
Q Consensus        56 ~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~  134 (207)
                      ..+.+....++++|++++|.++.++.+ ..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++. ..+..+++
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~   88 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE-GLDQALPD   88 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS-CHHHHCTT
T ss_pred             hhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc-cccccccc
Confidence            334455566677777777777666553 4577788888888887777777778888888888888877544 34566888


Q ss_pred             ccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhh
Q psy10233        135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEA  206 (207)
Q Consensus       135 L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~  206 (207)
                      |+.|++++|.+.+.+....+..+++|+.+++++|++. ..+.++...+..+++|++||...++..+|..|+.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~~i~~~er~~A~~  159 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK  159 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHH
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCCCCCHHHHHHHHH
Confidence            9999999999988644456788999999999999986 6677666678999999999999999999988875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=8.5e-20  Score=131.43  Aligned_cols=159  Identities=26%  Similarity=0.317  Sum_probs=138.1

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.+++++++++.++.++.+++|++|++++|.+..++.+..+++|++|++++|.+..++.+..++.|+.++++++....
T Consensus        41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred             CCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccccccccccccccccccc
Confidence            45568899999998889999999999999999999887799999999999999999888888999999999999998887


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHH
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM  180 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  180 (207)
                      .+.+..+++|+.+++++|.+..+   ..+..+++++.|++.+|.+++.  + .++++++|+.|++++|+++ +++.    
T Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~L~ls~N~i~-~i~~----  189 (199)
T d2omxa2         121 IDPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTDL--K-PLANLTTLERLDISSNKVS-DISV----  189 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCC-CCGG----
T ss_pred             ccccchhhhhHHhhhhhhhhccc---ccccccccccccccccccccCC--c-cccCCCCCCEEECCCCCCC-CCcc----
Confidence            77788899999999999998764   3577889999999999999874  2 3678999999999999987 4554    


Q ss_pred             HHHhCCcceec
Q psy10233        181 FINLCVNLRHL  191 (207)
Q Consensus       181 ~~~~~~~L~~L  191 (207)
                       +..+++|+.|
T Consensus       190 -l~~L~~L~~L  199 (199)
T d2omxa2         190 -LAKLTNLESL  199 (199)
T ss_dssp             -GGGCTTCSEE
T ss_pred             -ccCCCCCCcC
Confidence             5678888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=4.3e-20  Score=134.11  Aligned_cols=161  Identities=24%  Similarity=0.376  Sum_probs=140.9

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      ...+.++.+.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.++.+..+++|+.+++++|.+..+
T Consensus        48 L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~  127 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI  127 (210)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC
T ss_pred             ccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            45578888888888889999999999999999999888888999999999999999888899999999999999998888


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHH
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMF  181 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  181 (207)
                      +.+..++.++.+++++|.+++..   ....+++|+.+++++|.+++.  +. +..+++|+.|++++|.+. .++.     
T Consensus       128 ~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N~i~-~l~~-----  195 (210)
T d1h6ta2         128 NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHIS-DLRA-----  195 (210)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC-BCGG-----
T ss_pred             ccccccccccccccccccccccc---ccccccccccccccccccccc--cc-ccCCCCCCEEECCCCCCC-CChh-----
Confidence            78888899999999999987643   456678999999999999874  33 678999999999999987 5664     


Q ss_pred             HHhCCcceeccCc
Q psy10233        182 INLCVNLRHLDDY  194 (207)
Q Consensus       182 ~~~~~~L~~L~~~  194 (207)
                      +.++++|++|+++
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            6789999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=135.98  Aligned_cols=178  Identities=20%  Similarity=0.221  Sum_probs=122.3

Q ss_pred             hhhcCCccCC----CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CC
Q psy10233         10 CKDNKLYLTP----SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NL   82 (207)
Q Consensus        10 c~~~~~~~~~----~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~   82 (207)
                      |...+++..|    ...+.+++++|.++.+  ..+.++++|+.|++++|.+..++.+..+++|++|++++|.++..+ .+
T Consensus        17 C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~   96 (266)
T d1p9ag_          17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG   96 (266)
T ss_dssp             CTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             ccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555544    3567799999999765  357899999999999999998888888999999999999886554 46


Q ss_pred             ccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233         83 SHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL  160 (207)
Q Consensus        83 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  160 (207)
                      ..+++|+.|+++++.+..++  .+..+.+++.+++++|.++.++. ..+..++.++.+++++|.++.. .+..+..+++|
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L  174 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENL  174 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccceecc-ccccccccchhccccccccccc-Ccccccccccc
Confidence            67888888888888776552  34455666666666666665443 4455566666666666666654 24445566666


Q ss_pred             cEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        161 RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       161 ~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +.|++++|.+. .+|..    +..+++|+.|++.
T Consensus       175 ~~L~Ls~N~L~-~lp~~----~~~~~~L~~L~L~  203 (266)
T d1p9ag_         175 DTLLLQENSLY-TIPKG----FFGSHLLPFAFLH  203 (266)
T ss_dssp             CEEECCSSCCC-CCCTT----TTTTCCCSEEECC
T ss_pred             ceeecccCCCc-ccChh----HCCCCCCCEEEec
Confidence            66666666655 55543    3345556655554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.2e-18  Score=120.87  Aligned_cols=158  Identities=23%  Similarity=0.290  Sum_probs=134.4

Q ss_pred             eecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCC
Q psy10233         27 LHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC  106 (207)
Q Consensus        27 l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  106 (207)
                      ++.+.+..+.....+.+++.|+++++.+..++.+..+++|++|++++|.++.++.++.+++|++|++++|.+..++.+..
T Consensus        25 l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~  104 (199)
T d2omxa2          25 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN  104 (199)
T ss_dssp             TTCSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             hCCCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccc
Confidence            44455555555567889999999999999998899999999999999999988889999999999999999988888889


Q ss_pred             CCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCC
Q psy10233        107 LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV  186 (207)
Q Consensus       107 ~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  186 (207)
                      ++.|+.++++++.+...   ..+..+++|+.+++++|.+...   ..+..+++++.|++++|.+.+ ++.     +..++
T Consensus       105 l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~l~~-l~~-----l~~l~  172 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTD-LKP-----LANLT  172 (199)
T ss_dssp             CTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCC-CGG-----GTTCT
T ss_pred             ccccccccccccccccc---cccchhhhhHHhhhhhhhhccc---ccccccccccccccccccccC-Ccc-----ccCCC
Confidence            99999999999987664   2467789999999999999863   346789999999999999874 443     67899


Q ss_pred             cceeccCccc
Q psy10233        187 NLRHLDDYPV  196 (207)
Q Consensus       187 ~L~~L~~~~~  196 (207)
                      +|+.|+++..
T Consensus       173 ~L~~L~ls~N  182 (199)
T d2omxa2         173 TLERLDISSN  182 (199)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            9999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-17  Score=124.02  Aligned_cols=180  Identities=16%  Similarity=0.255  Sum_probs=134.3

Q ss_pred             hhhcCCccCC----CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc-------------------------
Q psy10233         10 CKDNKLYLTP----SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE-------------------------   58 (207)
Q Consensus        10 c~~~~~~~~~----~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~-------------------------   58 (207)
                      |...+++..|    ...+.+++++|.++.++  ++.++++|+.+++++|.+..++                         
T Consensus        18 c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             CCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             cCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455555544    34577999999997664  4889999999999998765221                         


Q ss_pred             --CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCC
Q psy10233         59 --NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDC  132 (207)
Q Consensus        59 --~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~  132 (207)
                        .+..+++|++|++++|.+..+.  .+..+++|+.+++++|.++.++  .+...++|+.|++++|.++.++. ..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccc
Confidence              1456678888888888775443  3556778888888888887774  36667888888888888877544 567788


Q ss_pred             CCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        133 PLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       133 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                      ++|+.+++++|.+++. .+..++.+++|+.|++++|.+.+..+.    .+..+++|++|++++
T Consensus       177 ~~L~~l~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~----~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLND  234 (284)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCS
T ss_pred             cccchhhhhhcccccc-ChhHhhhhhhccccccccccccccccc----ccccccccCEEEecC
Confidence            8888888888888865 467788888888888888888765554    367888888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.74  E-value=3.7e-20  Score=133.19  Aligned_cols=145  Identities=27%  Similarity=0.382  Sum_probs=99.5

Q ss_pred             CccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCC-CCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233         60 LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC-LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV  138 (207)
Q Consensus        60 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L  138 (207)
                      +..+++|++|++++|.++.++++..+++|+.|++++|.++.++.+.. +++|+.|++++|.++.++   .+..+++|+.|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~---~~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH---HHHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccc---ccccccccccc
Confidence            44555566666666655555555556666666666666555543222 245677777777766542   34556778888


Q ss_pred             EccCCCCCChhhHHHhccCCCCcEEEcCCCccccc------hhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233        139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK------IKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW  207 (207)
Q Consensus       139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~------~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  207 (207)
                      ++++|.+++......+..+++|+.|++++|++...      .+.++..++..+|+|+.||...+...+|..|++|
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~~~  195 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVA  195 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHHHh
Confidence            88888888754445678888999999999886533      2334555689999999999999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5e-17  Score=121.74  Aligned_cols=152  Identities=18%  Similarity=0.141  Sum_probs=131.0

Q ss_pred             CCCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCC
Q psy10233         19 PSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSH   95 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~   95 (207)
                      ....+.+++++|.++.++.++.+++|+.|++++|++...+ .+..+++|++|+++++.+..++  .+..+.+++.+++++
T Consensus        54 l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~  133 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (266)
T ss_dssp             CTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccc
Confidence            3456779999999998888889999999999999998875 4788999999999999886653  367889999999999


Q ss_pred             Ccccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233         96 NFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK  173 (207)
Q Consensus        96 ~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~  173 (207)
                      |.+..++  .+..++.++.+++++|.++.++. ..+..+++|++|++++|.++.  ++..+..+++|+.|++++|++.++
T Consensus       134 n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccceeccccccccccchhcccccccccccCc-cccccccccceeecccCCCcc--cChhHCCCCCCCEEEecCCCCCCC
Confidence            9998874  35667999999999999988655 678899999999999999997  566666889999999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5e-17  Score=118.95  Aligned_cols=162  Identities=20%  Similarity=0.269  Sum_probs=122.2

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.+.+.+++++.++.++.+++|+.|++++|.+.....+..+++++++++++|.++.++++..+++|+.+.++++....
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34567888899988888999999999999999998887788899999999999988888888888999999988776543


Q ss_pred             ccC----------------------CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233        101 IEN----------------------LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus       101 ~~~----------------------~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                      .+.                      +...++|+.+++++|.+.+.   ..+..+++|+.|++++|.+++.  +. ++.++
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~l--~~-l~~l~  195 (227)
T d1h6ua2         122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDI--SP-LASLP  195 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC--GG-GGGCT
T ss_pred             cchhccccchhhhhchhhhhchhhhhccccccccccccccccccc---hhhcccccceecccCCCccCCC--hh-hcCCC
Confidence            322                      23335677777777766543   2356677788888888877763  22 56777


Q ss_pred             CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233        159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY  194 (207)
Q Consensus       159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~  194 (207)
                      +|+.|++++|+++ .++.     +..+++|+.|+++
T Consensus       196 ~L~~L~Ls~N~lt-~i~~-----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         196 NLIEVHLKNNQIS-DVSP-----LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECTTSCCC-BCGG-----GTTCTTCCEEEEE
T ss_pred             CCCEEECcCCcCC-CCcc-----cccCCCCCEEEee
Confidence            8888888888766 4443     5677777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.1e-17  Score=128.29  Aligned_cols=160  Identities=22%  Similarity=0.263  Sum_probs=102.8

Q ss_pred             eEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccC
Q psy10233         24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN  103 (207)
Q Consensus        24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  103 (207)
                      .+.+++|.++.++.+..+++|+.+++++|.+..++.+..+++|++++++++.++.++.+..++.++.+.+..|.+..++.
T Consensus       223 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~  302 (384)
T d2omza2         223 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP  302 (384)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG
T ss_pred             EEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccc
Confidence            34455555554555555555555555555555554455555555555555555544445555555555555555555555


Q ss_pred             CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233        104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN  183 (207)
Q Consensus       104 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  183 (207)
                      +..++.++.+++++|.+++++   .+..+++|+.|++++|.+++.  + .++.+++|+.|++++|.+++ ++.     +.
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l--~-~l~~l~~L~~L~l~~N~l~~-l~~-----l~  370 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDV--S-SLANLTNINWLSAGHNQISD-LTP-----LA  370 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCB-CGG-----GT
T ss_pred             cchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCC--h-hHcCCCCCCEEECCCCcCCC-Chh-----hc
Confidence            556677888888888877643   356678888888888888763  3 46778888888888888874 333     56


Q ss_pred             hCCcceeccCcc
Q psy10233        184 LCVNLRHLDDYP  195 (207)
Q Consensus       184 ~~~~L~~L~~~~  195 (207)
                      ++++|+.|+++.
T Consensus       371 ~l~~L~~L~L~~  382 (384)
T d2omza2         371 NLTRITQLGLND  382 (384)
T ss_dssp             TCTTCSEEECCC
T ss_pred             cCCCCCEeeCCC
Confidence            788888887753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.3e-17  Score=119.44  Aligned_cols=141  Identities=28%  Similarity=0.385  Sum_probs=125.8

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ..+.+++++|.++.++.++++++|+.|++++|.+..++.+..+++|+.+++++|.+..++.+..++.++.+++++|.+..
T Consensus        69 ~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD  148 (210)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999988888999999999999999999998889999999999999999888888999999999999999988


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCC
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH  167 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~  167 (207)
                      .+....+++|+.+++++|.+++++   .+..+++|+.|++++|.+++  ++ .+..+++|+.|++++
T Consensus       149 ~~~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 ITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccccc---cccCCCCCCEEECCCCCCCC--Ch-hhcCCCCCCEEEccC
Confidence            777778899999999999997753   47788999999999999987  33 478899999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.5e-17  Score=118.70  Aligned_cols=141  Identities=20%  Similarity=0.261  Sum_probs=114.5

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccc----------------------c
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK----------------------V   78 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~----------------------~   78 (207)
                      ..+.++++.|.+..+..+.++++++.+++++|.+..++.+..+++|+++.++.+...                      .
T Consensus        64 ~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  143 (227)
T d1h6ua2          64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN  143 (227)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhch
Confidence            445688888888877778888999999999988887777778888888888776532                      1


Q ss_pred             ccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233         79 MENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP  158 (207)
Q Consensus        79 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  158 (207)
                      ...+..+++|+.|++++|.+...+.+..+++|+.|++++|.+++++   .+..+++|+.|++++|++++.  + .++.++
T Consensus       144 ~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~---~l~~l~~L~~L~Ls~N~lt~i--~-~l~~l~  217 (227)
T d1h6ua2         144 ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDV--S-PLANTS  217 (227)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBC--G-GGTTCT
T ss_pred             hhhhccccccccccccccccccchhhcccccceecccCCCccCCCh---hhcCCCCCCEEECcCCcCCCC--c-ccccCC
Confidence            2234567789999999998887777888999999999999998753   467789999999999999974  3 378999


Q ss_pred             CCcEEEcCC
Q psy10233        159 ELRVLTLSH  167 (207)
Q Consensus       159 ~L~~l~l~~  167 (207)
                      +|+.|++++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=2.2e-17  Score=126.34  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=62.5

Q ss_pred             HHh--hhcCCccCCCC----CCeEEeecCCCc----CccCccCCCCCCEEEeec-CCcc-Ccc-CCccCCCCCEEEeecC
Q psy10233          8 KIC--KDNKLYLTPSL----NDVLYLHFKGYT----VIENLEEYTGLKCLWLEN-NGIS-KIE-NLDAQTEMRSIYMHHN   74 (207)
Q Consensus         8 ~~c--~~~~~~~~~~~----~~~l~l~~~~~~----~~~~l~~l~~L~~L~l~~-~~l~-~~~-~~~~l~~L~~L~l~~n   74 (207)
                      +.|  .|.|++|+...    +..++++++++.    .+++++++++|++|++++ |.+. .+| .++.+++|++|++++|
T Consensus        32 d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE
T ss_pred             CCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccc
Confidence            456  49999998753    344788888774    457899999999999986 6776 455 5899999999999998


Q ss_pred             cccccc--CCccccCCcEEecCCC
Q psy10233         75 LVKVME--NLSHMQLLDTINLSHN   96 (207)
Q Consensus        75 ~~~~~~--~~~~~~~L~~L~l~~~   96 (207)
                      .+....  .+..++.|+.+++++|
T Consensus       112 ~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_         112 NVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccchhhhcccccccc
Confidence            774321  1333344444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.1e-17  Score=109.81  Aligned_cols=120  Identities=20%  Similarity=0.364  Sum_probs=59.9

Q ss_pred             EEEeecCccccccCCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233         68 SIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE  146 (207)
Q Consensus        68 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~  146 (207)
                      +|++++|.++.++.+..+++|++|++++|.++.+| .+..+++|+.|++++|.+++++   .+..+++|+++++++|.++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC---ccccccccCeEECCCCccC
Confidence            34445554444444444555555555555554443 2444455555555555554432   2444555555555555555


Q ss_pred             ChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceec
Q psy10233        147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL  191 (207)
Q Consensus       147 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L  191 (207)
                      +.+....+..+++|+.+++++|+++ ..+.....+...+|+|+.|
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~-~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC-cCccHHHHHHHHCcCcceE
Confidence            4322234455666666666666654 2333333345555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.3e-18  Score=118.41  Aligned_cols=130  Identities=23%  Similarity=0.320  Sum_probs=110.5

Q ss_pred             ccCccCCCCCCEEEeecCCccCccCC-ccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccC--CCCCCCCc
Q psy10233         35 IENLEEYTGLKCLWLENNGISKIENL-DAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLR  111 (207)
Q Consensus        35 ~~~l~~l~~L~~L~l~~~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~  111 (207)
                      .+.+.+..++++|++++|.|..++.+ ..+++|++|++++|.++.++++..+++|++|++++|.+..++.  +..+++|+
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            34556778899999999999998764 6689999999999999988889999999999999999988753  45689999


Q ss_pred             EEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEE
Q psy10233        112 TLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLT  164 (207)
Q Consensus       112 ~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~  164 (207)
                      .|++++|.+++++....+..+++|+.+++++|.++..+.  +..+..+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999999887766678889999999999998876421  34577899999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.3e-17  Score=109.61  Aligned_cols=119  Identities=23%  Similarity=0.444  Sum_probs=103.7

Q ss_pred             CEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCc
Q psy10233         45 KCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI  123 (207)
Q Consensus        45 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  123 (207)
                      ++|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.++.+..+++|+.+++++|.++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            579999999999999999999999999999998875 5889999999999999999998899999999999999999987


Q ss_pred             cccccCCCCCCccEEEccCCCCCChh--hHHHhccCCCCcEE
Q psy10233        124 EDIEHLKDCPLLSIVDVSHNQIEDEE--VIEVFGAMPELRVL  163 (207)
Q Consensus       124 ~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~l  163 (207)
                      +....+..+++|+.+++++|.+++.+  .......+|+++.+
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            76667888999999999999887532  23455567887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.6e-15  Score=115.43  Aligned_cols=169  Identities=25%  Similarity=0.312  Sum_probs=110.4

Q ss_pred             CCCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC-------------
Q psy10233         19 PSLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN-------------   81 (207)
Q Consensus        19 ~~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~-------------   81 (207)
                      |...+++++++|.++.++  ++.++++|++|++++|.+..++  .|..++.|++|++++|.++.++.             
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            345678999999998774  5889999999999999999874  38889999999998876532211             


Q ss_pred             ------------------------------------CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccc
Q psy10233         82 ------------------------------------LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED  125 (207)
Q Consensus        82 ------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  125 (207)
                                                          +..+++|+.+++++|.+..++.. .+++++.|++++|.+.....
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECT
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc-cCCccCEEECCCCcCCCCCh
Confidence                                                22344455555555555443221 23456666666665544322


Q ss_pred             cccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       126 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                       ..+..++.++.|++++|.+++. .+..+..+++|+.|++++|.+. .+|..    +..+++|+.|+++.
T Consensus       189 -~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~-~lp~~----l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         189 -ASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGG----LADHKYIQVVYLHN  251 (305)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTT----TTTCSSCCEEECCS
T ss_pred             -hHhhcccccccccccccccccc-ccccccccccceeeeccccccc-ccccc----cccccCCCEEECCC
Confidence             4456666677777777777664 2455666777777777777765 45543    45667777776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.9e-15  Score=118.02  Aligned_cols=162  Identities=22%  Similarity=0.283  Sum_probs=133.6

Q ss_pred             CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233         22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI  101 (207)
Q Consensus        22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~  101 (207)
                      ...+.++.+.++.+.....+++|+.|++++|.+..++.+..+++|+.+++++|.++.++.+..+++|++++++++.+..+
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC
T ss_pred             cceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCC
Confidence            44567777777766667778889999999998888887888889999999999888877788888999999998888887


Q ss_pred             cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHH
Q psy10233        102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMF  181 (207)
Q Consensus       102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  181 (207)
                      +.+..++.++.+.+..|.+++.   ..+..+++++.+++++|.+++.  + .+..+++|+.|++++|.++ .++.     
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~---~~~~~~~~l~~L~ls~n~l~~l--~-~l~~l~~L~~L~L~~n~l~-~l~~-----  346 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDI--S-PVSSLTKLQRLFFANNKVS-DVSS-----  346 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCC---GGGGGCTTCSEEECCSSCCSCC--G-GGGGCTTCCEEECCSSCCC-CCGG-----
T ss_pred             Cccccccccccccccccccccc---cccchhcccCeEECCCCCCCCC--c-ccccCCCCCEEECCCCCCC-CChh-----
Confidence            7777888889999998888764   2467778899999999999874  2 3678999999999999987 4553     


Q ss_pred             HHhCCcceeccCcc
Q psy10233        182 INLCVNLRHLDDYP  195 (207)
Q Consensus       182 ~~~~~~L~~L~~~~  195 (207)
                      +..+++|++|+++.
T Consensus       347 l~~l~~L~~L~l~~  360 (384)
T d2omza2         347 LANLTNINWLSAGH  360 (384)
T ss_dssp             GGGCTTCCEEECCS
T ss_pred             HcCCCCCCEEECCC
Confidence            67899999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1.1e-15  Score=109.01  Aligned_cols=148  Identities=16%  Similarity=0.193  Sum_probs=104.2

Q ss_pred             eEEeecCCCcCcc-CccCCCCCCEEEeecCCccC-c--cCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233         24 VLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISK-I--ENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF   97 (207)
Q Consensus        24 ~l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~   97 (207)
                      .++++.++++.+| .+.  +++++|++++|.|.. .  ..|..+++|++|++++|.+..++  .+..+++|++|++++|.
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            5677778876554 332  578889999998865 3  23678888999999888886553  47778888888888888


Q ss_pred             ccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233         98 IEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus        98 ~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +..++  .+..+++|+.|++++|.++.++. ..+..+++|+++++++|.+........+.  ..++.+.+..+.+.+..|
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC
Confidence            88774  36778888888888888887655 67788888888888888876432122222  124445555666555445


Q ss_pred             h
Q psy10233        176 N  176 (207)
Q Consensus       176 ~  176 (207)
                      .
T Consensus       167 ~  167 (192)
T d1w8aa_         167 S  167 (192)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.5e-15  Score=110.07  Aligned_cols=137  Identities=19%  Similarity=0.316  Sum_probs=119.2

Q ss_pred             CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcccccc--CCCCCCCC
Q psy10233         37 NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVL  110 (207)
Q Consensus        37 ~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L  110 (207)
                      .+.++++|++|++++|.+..++  .+....+|+++++++|.++.++  .+..+++|+.|++++|.+..++  .+..+++|
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            4678899999999999988763  4777899999999999997764  3778899999999999998874  47788999


Q ss_pred             cEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233        111 RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       111 ~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      +.+++++|.++++.+ ..+..+++|+.|++++|.+... .+..++.+++|+.|++++|++.++.+
T Consensus       180 ~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         180 DRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             chhhhhhccccccCh-hHhhhhhhcccccccccccccc-cccccccccccCEEEecCCCCCCCcc
Confidence            999999999988544 6789999999999999999986 47888999999999999999987655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=2.1e-15  Score=115.22  Aligned_cols=165  Identities=17%  Similarity=0.156  Sum_probs=100.5

Q ss_pred             CCCeEEeec-CCCc--CccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccc--cCCccccCCcEEec
Q psy10233         21 LNDVLYLHF-KGYT--VIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINL   93 (207)
Q Consensus        21 ~~~~l~l~~-~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l   93 (207)
                      ..+.++++. |++.  .+++++++++|++|++++|.+...+.  +..+.+|++++++.|.+...  ..+..++.++.+++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            456678876 6664  56789999999999999998876532  56667777777777655322  33555566666666


Q ss_pred             CCCcccc-cc-CCC------------------------------------------------CCCCCcEEEcCCCccCCc
Q psy10233         94 SHNFIEK-IE-NLS------------------------------------------------CLPVLRTLHLSHNRLKTI  123 (207)
Q Consensus        94 ~~~~~~~-~~-~~~------------------------------------------------~~~~L~~L~l~~n~i~~~  123 (207)
                      ++|.+.. +| .+.                                                .++.++.++++++.+...
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5554432 11 122                                                223444455555544332


Q ss_pred             cccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233        124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD  193 (207)
Q Consensus       124 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~  193 (207)
                      .  ..+..+++++.|++++|.+++. +|..++.+++|+.|++++|.++|.+|.     ..++.+|+.+++
T Consensus       237 ~--~~~~~~~~L~~L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~-----~~~L~~L~~l~l  298 (313)
T d1ogqa_         237 L--GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSAY  298 (313)
T ss_dssp             G--GGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEECCC-----STTGGGSCGGGT
T ss_pred             c--cccccccccccccCccCeeccc-CChHHhCCCCCCEEECcCCcccccCCC-----cccCCCCCHHHh
Confidence            1  2355566677777777777643 566666777777777777777766664     245555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=7.2e-15  Score=104.61  Aligned_cols=128  Identities=18%  Similarity=0.247  Sum_probs=109.2

Q ss_pred             CCEEEeecCCccCccC-CccCCCCCEEEeecCcccc-c--cCCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCC
Q psy10233         44 LKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKV-M--ENLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSH  117 (207)
Q Consensus        44 L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~-~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~  117 (207)
                      .++++.+++.+..+|. +.  +++++|++++|.++. +  ..|..+++|+.|++++|.+..++  .+..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4578999999998875 32  689999999999963 3  34788999999999999998773  577889999999999


Q ss_pred             CccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233        118 NRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK  175 (207)
Q Consensus       118 n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  175 (207)
                      |+++.++. ..+.++++|++|++++|.++.. .++.|..+++|+.+++++|++.+...
T Consensus        88 N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i-~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccCH-HHHhCCCcccccccCCcccccc-CHHHhcCCcccccccccccccccccc
Confidence            99998765 6789999999999999999986 46778899999999999999876544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.56  E-value=2.8e-17  Score=117.93  Aligned_cols=134  Identities=28%  Similarity=0.374  Sum_probs=111.2

Q ss_pred             cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCc-cccCCcEEecCCCccccccCCCCCCCCcEEE
Q psy10233         36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS-HMQLLDTINLSHNFIEKIENLSCLPVLRTLH  114 (207)
Q Consensus        36 ~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  114 (207)
                      .++..+++|+.|++++|.|..++.+..+++|++|++++|.++.++.+. .+++|++|++++|.++.++.+..+++|+.|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             hHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999988999999999999999998877643 4568999999999998887777789999999


Q ss_pred             cCCCccCCccccccCCCCCCccEEEccCCCCCChhh---------HHHhccCCCCcEEEcCCCccc
Q psy10233        115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV---------IEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~---------~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      +++|.+++++....+..+++|+.|++++|.+.....         ...+..+|+|+.||  +.++.
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999887655678999999999999997754210         12367889999987  44443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-13  Score=97.72  Aligned_cols=169  Identities=17%  Similarity=0.227  Sum_probs=107.1

Q ss_pred             CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c--CCccCCCCCEEEeec-Cccccc--cCCccccCCcEEe
Q psy10233         21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E--NLDAQTEMRSIYMHH-NLVKVM--ENLSHMQLLDTIN   92 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~--~~~~l~~L~~L~l~~-n~~~~~--~~~~~~~~L~~L~   92 (207)
                      ..+.++++.|.++.++  .+.++++|++|++++|.+... +  .|..++.++++.+.. +.+...  ..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4567888888887654  478889999999999877653 2  356677777777654 344332  2356777888888


Q ss_pred             cCCCccccccCCCC---CC-------------------------CCcEEEcCCCccCCccccccCCCCCCccEE-EccCC
Q psy10233         93 LSHNFIEKIENLSC---LP-------------------------VLRTLHLSHNRLKTIEDIEHLKDCPLLSIV-DVSHN  143 (207)
Q Consensus        93 l~~~~~~~~~~~~~---~~-------------------------~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L-~l~~n  143 (207)
                      ++++.+...+....   +.                         .+..+++.+|.++.++. ..+ ..+.+..+ +++.|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~-~~~-~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-CAF-NGTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TTT-TTCCEEEEECTTCT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc-ccc-cchhhhcccccccc
Confidence            87776654322111   12                         34445555555554333 222 23344333 46667


Q ss_pred             CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233        144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      .++.. ....+.++++|+.|++++|++. .+|..   .+.++++|+.++....
T Consensus       188 ~l~~l-~~~~f~~l~~L~~L~Ls~N~l~-~l~~~---~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         188 NLEEL-PNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNL  235 (242)
T ss_dssp             TCCCC-CTTTTTTSCCCSEEECTTSCCC-CCCSS---SCTTCCEEESSSEESS
T ss_pred             ccccc-cHHHhcCCCCCCEEECCCCcCC-ccCHH---HHcCCcccccCcCCCC
Confidence            77764 2455778899999999999887 55543   3677788887776543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=2.8e-12  Score=97.16  Aligned_cols=161  Identities=18%  Similarity=0.228  Sum_probs=111.8

Q ss_pred             CeEEeecCCCcCcc-CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233         23 DVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF   97 (207)
Q Consensus        23 ~~l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~   97 (207)
                      ..++.++.+++.+| .+  .+.+++|++++|.+..++  .|..+++|++|++++|.+..++  .|..++.|+.|++++|.
T Consensus        13 ~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            45677777776554 34  368999999999999985  4889999999999999987663  48889999999999987


Q ss_pred             cccccCCCCCCCCcE--------------------------------------------------EEcCCCccCCccccc
Q psy10233         98 IEKIENLSCLPVLRT--------------------------------------------------LHLSHNRLKTIEDIE  127 (207)
Q Consensus        98 ~~~~~~~~~~~~L~~--------------------------------------------------L~l~~n~i~~~~~~~  127 (207)
                      ++.+|.. ..+.+..                                                  +++++|.+..++.  
T Consensus        91 l~~l~~~-~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--  167 (305)
T d1xkua_          91 LKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--  167 (305)
T ss_dssp             CSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--
T ss_pred             cCcCccc-hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc--
Confidence            7655321 1123333                                                  3333333333211  


Q ss_pred             cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       128 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                        ..+++++.|++++|..+.. .+..+..++.++.|++++|.+.+..+.    .+..+++|+.|+++.
T Consensus       168 --~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~----~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         168 --GLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNN  228 (305)
T ss_dssp             --SCCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCS
T ss_pred             --ccCCccCEEECCCCcCCCC-ChhHhhccccccccccccccccccccc----cccccccceeeeccc
Confidence              1235667777777766654 356677788888888888887754444    367788888887764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-12  Score=97.27  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=103.3

Q ss_pred             CeEEeecCCCcC--cc-CccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecC-ccccc--cC-CccccCCcEEec
Q psy10233         23 DVLYLHFKGYTV--IE-NLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHN-LVKVM--EN-LSHMQLLDTINL   93 (207)
Q Consensus        23 ~~l~l~~~~~~~--~~-~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n-~~~~~--~~-~~~~~~L~~L~l   93 (207)
                      +.++++.+.+..  +. -+..+++|++|+++++.+...  ..+..+++|++|+++++ .++..  .. ...+++|++|++
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccc
Confidence            345555444421  22 245677888888888776542  34566778888888875 44321  22 345778888888


Q ss_pred             CCC-ccccc--c-CCC-CCCCCcEEEcCCCc--cCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccCCCCcEEEc
Q psy10233         94 SHN-FIEKI--E-NLS-CLPVLRTLHLSHNR--LKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAMPELRVLTL  165 (207)
Q Consensus        94 ~~~-~~~~~--~-~~~-~~~~L~~L~l~~n~--i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~l~l  165 (207)
                      +++ .++..  . .+. ..+.|+.|+++++.  +++.........+++|++|++++|. +++. ....+..+++|+.|++
T Consensus       129 s~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-~~~~l~~~~~L~~L~L  207 (284)
T d2astb2         129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSL  207 (284)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEEC
T ss_pred             ccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-hhhhhcccCcCCEEEC
Confidence            876 34321  1 122 23578888887752  3332222234567888889988864 5544 4566677888999999


Q ss_pred             CCCc-cccchhhHHHHHHHhCCcceeccCccc
Q psy10233        166 SHNP-CVGKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       166 ~~n~-~~~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ++|. +++....    .+.++++|+.|++..+
T Consensus       208 ~~C~~i~~~~l~----~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         208 SRCYDIIPETLL----ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCTTCCGGGGG----GGGGCTTCCEEECTTS
T ss_pred             CCCCCCChHHHH----HHhcCCCCCEEeeeCC
Confidence            8864 4433332    2567888888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-12  Score=97.15  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             eEEeecCCCc--CccCccCCCCCCEEEeecC-CccC--ccC-CccCCCCCEEEeecCc-cccc--c-CCc-cccCCcEEe
Q psy10233         24 VLYLHFKGYT--VIENLEEYTGLKCLWLENN-GISK--IEN-LDAQTEMRSIYMHHNL-VKVM--E-NLS-HMQLLDTIN   92 (207)
Q Consensus        24 ~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~-~l~~--~~~-~~~l~~L~~L~l~~n~-~~~~--~-~~~-~~~~L~~L~   92 (207)
                      .+.++++.+.  .+..++++++|+.|+++++ .+..  +.. +..+++|++|+++++. ++..  . .+. .+++|+.|+
T Consensus        75 ~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             cccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            4444444442  2344555666666666654 2321  111 2345666666666542 2211  1 111 234566666


Q ss_pred             cCCCc--ccc--ccC-CCCCCCCcEEEcCCCc-cCCccccccCCCCCCccEEEccCC-CCCChhhHHHhccCCCCcEEEc
Q psy10233         93 LSHNF--IEK--IEN-LSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTL  165 (207)
Q Consensus        93 l~~~~--~~~--~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l  165 (207)
                      ++++.  ++.  +.. ...+++|++|++++|. +++. ....+..+++|++|++++| .+++.. ...++.+++|+.|++
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l  232 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQV  232 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEEC
T ss_pred             hcccccccccccccccccccccccccccccccCCCch-hhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEee
Confidence            65542  221  111 2234566666666643 4332 2234455566666666663 444432 333455666666666


Q ss_pred             CCC
Q psy10233        166 SHN  168 (207)
Q Consensus       166 ~~n  168 (207)
                      +++
T Consensus       233 ~~~  235 (284)
T d2astb2         233 FGI  235 (284)
T ss_dssp             TTS
T ss_pred             eCC
Confidence            655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.7e-11  Score=80.06  Aligned_cols=80  Identities=18%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             CCEEEeecCCccCcc-CCccCCCCCEEEeecC-cccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCC
Q psy10233         44 LKCLWLENNGISKIE-NLDAQTEMRSIYMHHN-LVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSH  117 (207)
Q Consensus        44 L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n-~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~  117 (207)
                      .+.++.+++.+...+ .+..+++|++|+++++ .++.++  .|..+++|+.|++++|.++.++  .+..+++|+.|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344555555554443 2444555555555433 244332  2444555555555555554442  134444455555555


Q ss_pred             CccCCc
Q psy10233        118 NRLKTI  123 (207)
Q Consensus       118 n~i~~~  123 (207)
                      |.++.+
T Consensus        90 N~l~~l   95 (156)
T d2ifga3          90 NALESL   95 (156)
T ss_dssp             SCCSCC
T ss_pred             CCCccc
Confidence            544443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2e-10  Score=78.48  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             CEEEeecCcccc-ccCCccccCCcEEecCCC-cccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccC
Q psy10233         67 RSIYMHHNLVKV-MENLSHMQLLDTINLSHN-FIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH  142 (207)
Q Consensus        67 ~~L~l~~n~~~~-~~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~  142 (207)
                      +.++.+++++.. +..+..+++|++|++.++ .++.++  .+..+++|+.|++++|+++.++. ..+..+++|+.|++++
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccceeccC
Confidence            344444444422 233444555555555444 344442  34455555555555555555433 3455555555555555


Q ss_pred             CCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233        143 NQIEDEEVIEVFGAMPELRVLTLSHNPCV  171 (207)
Q Consensus       143 n~l~~~~~~~~~~~~~~L~~l~l~~n~~~  171 (207)
                      |+++... +..+. ...|+.|++++|++.
T Consensus        90 N~l~~l~-~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLS-WKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCC-STTTC-SCCCCEEECCSSCCC
T ss_pred             CCCcccC-hhhhc-cccccccccCCCccc
Confidence            5555431 22332 224555555555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.13  E-value=9.1e-10  Score=83.99  Aligned_cols=97  Identities=24%  Similarity=0.391  Sum_probs=79.8

Q ss_pred             CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233         21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK  100 (207)
Q Consensus        21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~  100 (207)
                      ....++++.++++.++++  .++|++|++++|.+..+|..  ..+|+.|++++|.++.++.+  .+.|++|++++|.+..
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh--cccccccccccccccc
Confidence            355789999998877653  57899999999999988763  46899999999988776653  2469999999999998


Q ss_pred             ccCCCCCCCCcEEEcCCCccCCc
Q psy10233        101 IENLSCLPVLRTLHLSHNRLKTI  123 (207)
Q Consensus       101 ~~~~~~~~~L~~L~l~~n~i~~~  123 (207)
                      +|....+++|+.++++++.+...
T Consensus       113 lp~~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         113 LPELQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSCC
T ss_pred             ccchhhhccceeecccccccccc
Confidence            88888889999999999887653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3e-10  Score=82.81  Aligned_cols=165  Identities=19%  Similarity=0.160  Sum_probs=110.3

Q ss_pred             CeEEeecCCCcCcc-CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccc-cc--CCccccCCcEEecCC-
Q psy10233         23 DVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKV-ME--NLSHMQLLDTINLSH-   95 (207)
Q Consensus        23 ~~l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~-~~--~~~~~~~L~~L~l~~-   95 (207)
                      ..++++..+++.+| .+  .+++++|++++|.+..++.  |..+++|++|++++|.+.. ++  .|..++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            46788888887654 33  2579999999999998854  8899999999999998753 32  367889999998765 


Q ss_pred             Ccccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCC-------------------------CccEEEccCCCCCCh
Q psy10233         96 NFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCP-------------------------LLSIVDVSHNQIEDE  148 (207)
Q Consensus        96 ~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~-------------------------~L~~L~l~~n~l~~~  148 (207)
                      +.+...+  .+..+++|+.+++++|.+...+....+..+.                         .+..+++++|.++..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            4665543  3677899999999999886643322222222                         455566666666543


Q ss_pred             hhHHHhccCCCCcEE-EcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233        149 EVIEVFGAMPELRVL-TLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP  195 (207)
Q Consensus       149 ~~~~~~~~~~~L~~l-~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~  195 (207)
                        +......+++..+ .+++|.+. .+|..   .+.++++|+.|+++.
T Consensus       169 --~~~~~~~~~l~~~~~l~~n~l~-~l~~~---~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         169 --HNCAFNGTQLDELNLSDNNNLE-ELPND---VFHGASGPVILDISR  210 (242)
T ss_dssp             --CTTTTTTCCEEEEECTTCTTCC-CCCTT---TTTTSCCCSEEECTT
T ss_pred             --ccccccchhhhccccccccccc-cccHH---HhcCCCCCCEEECCC
Confidence              2222233444444 44555554 45442   356788888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=1.3e-10  Score=89.34  Aligned_cols=112  Identities=21%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             cccCCcEEecCCCccccc-------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChhhHH-
Q psy10233         84 HMQLLDTINLSHNFIEKI-------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEEVIE-  152 (207)
Q Consensus        84 ~~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~~-  152 (207)
                      .++++++|++++|.++..       ..+...++|+.|++++|.++....   ...+..+++|++|++++|.+++.+... 
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            456688888888776531       235566788888888887754221   134567788888888888887643332 


Q ss_pred             --Hhcc--CCCCcEEEcCCCccccchhhHHHHHH-HhCCcceeccCcc
Q psy10233        153 --VFGA--MPELRVLTLSHNPCVGKIKNYRRMFI-NLCVNLRHLDDYP  195 (207)
Q Consensus       153 --~~~~--~~~L~~l~l~~n~~~~~~~~~~~~~~-~~~~~L~~L~~~~  195 (207)
                        .+..  .+.|+.|++++|.+...........+ .+++.|++|+++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence              2222  35688888888887654443333333 4678888887754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=6.8e-09  Score=78.99  Aligned_cols=97  Identities=26%  Similarity=0.448  Sum_probs=80.5

Q ss_pred             CCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccC
Q psy10233         42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK  121 (207)
Q Consensus        42 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~  121 (207)
                      .++++|+++++.+..+|.+  .++|++|++++|.++.++..  ..+|+.|++++|.++.++.+.  +.|++|++++|.+.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc--cccccccccccccc
Confidence            4688999999999988863  57899999999999877653  568999999999988776543  57999999999998


Q ss_pred             CccccccCCCCCCccEEEccCCCCCC
Q psy10233        122 TIEDIEHLKDCPLLSIVDVSHNQIED  147 (207)
Q Consensus       122 ~~~~~~~l~~~~~L~~L~l~~n~l~~  147 (207)
                      .++.   ...+++|+.++++++.+..
T Consensus       112 ~lp~---~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         112 KLPE---LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             SCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             cccc---hhhhccceeeccccccccc
Confidence            7643   4668899999999987765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=1.7e-09  Score=82.88  Aligned_cols=159  Identities=19%  Similarity=0.214  Sum_probs=102.4

Q ss_pred             ccCCCCCCEEEeecCCccCc--c----CCccCCCCCEEEeecCcccccc------C---------CccccCCcEEecCCC
Q psy10233         38 LEEYTGLKCLWLENNGISKI--E----NLDAQTEMRSIYMHHNLVKVME------N---------LSHMQLLDTINLSHN   96 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~--~----~~~~l~~L~~L~l~~n~~~~~~------~---------~~~~~~L~~L~l~~~   96 (207)
                      +..+++|+.|++++|.+...  .    .+...++|++|++++|.+....      .         ....+.|+.+.+++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            45567777888887776542  1    1345677888888777653210      0         123456777777777


Q ss_pred             ccccc------cCCCCCCCCcEEEcCCCccCCcc----ccccCCCCCCccEEEccCCCCCChh---hHHHhccCCCCcEE
Q psy10233         97 FIEKI------ENLSCLPVLRTLHLSHNRLKTIE----DIEHLKDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELRVL  163 (207)
Q Consensus        97 ~~~~~------~~~~~~~~L~~L~l~~n~i~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~l  163 (207)
                      .++..      ..+...++++.+++++|.+...+    ....+..+++|+.|++++|.++..+   +...+..+++|+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            66432      12445578888999888876521    1234566788899999998886533   23456778889999


Q ss_pred             EcCCCccccchhhHHHHHHHhC--CcceeccCccc
Q psy10233        164 TLSHNPCVGKIKNYRRMFINLC--VNLRHLDDYPV  196 (207)
Q Consensus       164 ~l~~n~~~~~~~~~~~~~~~~~--~~L~~L~~~~~  196 (207)
                      ++++|.+.+.-.......+..+  +.|+.|++++.
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence            9999988765444444445443  56888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=85.77  Aligned_cols=133  Identities=20%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             CCCCCCEEEeecCCccCcc------CCccCCCCCEEEeecCccccc--cC-----CccccCCcEEecCCCccccc--c--
Q psy10233         40 EYTGLKCLWLENNGISKIE------NLDAQTEMRSIYMHHNLVKVM--EN-----LSHMQLLDTINLSHNFIEKI--E--  102 (207)
Q Consensus        40 ~l~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~l~~n~~~~~--~~-----~~~~~~L~~L~l~~~~~~~~--~--  102 (207)
                      ....++.+++++|.+....      .+...+.++.+++++|.+...  ..     ......|+.++++++.++..  .  
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            3455666666666554321      123445566666666555321  00     11233455566655554332  0  


Q ss_pred             --CCCCCCCCcEEEcCCCccCCccc---cccC-CCCCCccEEEccCCCCCChh---hHHHhccCCCCcEEEcCCCcccc
Q psy10233        103 --NLSCLPVLRTLHLSHNRLKTIED---IEHL-KDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELRVLTLSHNPCVG  172 (207)
Q Consensus       103 --~~~~~~~L~~L~l~~n~i~~~~~---~~~l-~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~l~l~~n~~~~  172 (207)
                        .....++|++|++++|.+++.+.   ...+ ...+.|+.|++++|.+++.+   +.+.+..+++|+.|++++|++..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence              11223455666666665543111   0111 22345566666666655422   12233445556666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.9e-09  Score=73.90  Aligned_cols=91  Identities=25%  Similarity=0.337  Sum_probs=67.1

Q ss_pred             CCCCCcEEEcCCCccCCcccc-ccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc---hhhHHHHH
Q psy10233        106 CLPVLRTLHLSHNRLKTIEDI-EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK---IKNYRRMF  181 (207)
Q Consensus       106 ~~~~L~~L~l~~n~i~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~---~~~~~~~~  181 (207)
                      .+++|+.|++++|.++.+... ..+..+++|+.|++++|.+++.+....++ ...|+.+++++|++.+.   .+.++..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHHH
Confidence            356677777777777665432 34566788889999999998865444544 45799999999998754   34566778


Q ss_pred             HHhCCcceeccCcccC
Q psy10233        182 INLCVNLRHLDDYPVF  197 (207)
Q Consensus       182 ~~~~~~L~~L~~~~~~  197 (207)
                      +..+|+|+.||...++
T Consensus       142 ~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         142 RERFPKLLRLDGHELP  157 (162)
T ss_dssp             HTTSTTCCEETTEECC
T ss_pred             HHHCCCCCEECcCCCc
Confidence            8999999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.3e-08  Score=78.44  Aligned_cols=154  Identities=19%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             ccCCCCCCEEEeecCCccCc--cC-----CccCCCCCEEEeecCcccccc--C----CccccCCcEEecCCCccccc---
Q psy10233         38 LEEYTGLKCLWLENNGISKI--EN-----LDAQTEMRSIYMHHNLVKVME--N----LSHMQLLDTINLSHNFIEKI---  101 (207)
Q Consensus        38 l~~l~~L~~L~l~~~~l~~~--~~-----~~~l~~L~~L~l~~n~~~~~~--~----~~~~~~L~~L~l~~~~~~~~---  101 (207)
                      +...+.++.+++++|.+...  ..     ......|+.++++++.+....  .    +...++|++|++++|.++..   
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence            34556666666666665431  10     122345666666666553221  1    23345566677766665431   


Q ss_pred             ---cCCC-CCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChhhHHH---hc-cCCCCcEEEcCCCcc
Q psy10233        102 ---ENLS-CLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEEVIEV---FG-AMPELRVLTLSHNPC  170 (207)
Q Consensus       102 ---~~~~-~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~-~~~~L~~l~l~~n~~  170 (207)
                         ..+. ..+.|+.|++++|.+++.+.   ...+..+++|++|++++|.+++.+....   +. ....|+.++++++.+
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence               1122 23556667777766654211   1224445666677777776665332222   21 222566677766666


Q ss_pred             ccchhhHHHHHHHhCCcceec
Q psy10233        171 VGKIKNYRRMFINLCVNLRHL  191 (207)
Q Consensus       171 ~~~~~~~~~~~~~~~~~L~~L  191 (207)
                      .++.......+..+.|+|+.|
T Consensus       439 ~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         439 SEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CHHHHHHHHHHHHHCTTSEEE
T ss_pred             CHHHHHHHHHHHHhCCCCEEe
Confidence            655555555556666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-08  Score=69.90  Aligned_cols=81  Identities=25%  Similarity=0.367  Sum_probs=53.0

Q ss_pred             ccccCCcEEecCCCccccccC----CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChh------hHH
Q psy10233         83 SHMQLLDTINLSHNFIEKIEN----LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE------VIE  152 (207)
Q Consensus        83 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~------~~~  152 (207)
                      ..+++|++|++++|.++.++.    +..+++|+.|++++|.|++++....+.. ..|+.+++++|++....      ...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-LKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc-cccceeecCCCCcCcCcccchhHHHH
Confidence            356777777777777766532    3346778888888888777655444443 35778888888776421      123


Q ss_pred             HhccCCCCcEEE
Q psy10233        153 VFGAMPELRVLT  164 (207)
Q Consensus       153 ~~~~~~~L~~l~  164 (207)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            466788888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.35  E-value=4.9e-07  Score=61.82  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=29.2

Q ss_pred             CCCCccEEEccCCCCCChhhH---HHhccCCCCcEEEcCCCccc---cchhhHHHHHHHhCCcceeccCccc
Q psy10233        131 DCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHNPCV---GKIKNYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       131 ~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~l~l~~n~~~---~~~~~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ..+.|++|++++|.+++.+..   ..+...+.|+.|++++|...   +.........+...++|+.|++...
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            344555555555555543222   22334445555555554322   1112223334455555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.12  E-value=1e-06  Score=60.17  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             CccccCCcEEecCCCccccc--c----CCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCCh----
Q psy10233         82 LSHMQLLDTINLSHNFIEKI--E----NLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDE----  148 (207)
Q Consensus        82 ~~~~~~L~~L~l~~~~~~~~--~----~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~----  148 (207)
                      +...++|++|++++|.++..  .    .+...+.|+.|++++|.+++.+.   ...+...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            44555666677766666432  1    23344667777777777765322   13466677888888887755431    


Q ss_pred             --hhHHHhccCCCCcEEEcCCCcc
Q psy10233        149 --EVIEVFGAMPELRVLTLSHNPC  170 (207)
Q Consensus       149 --~~~~~~~~~~~L~~l~l~~n~~  170 (207)
                        .+...+...+.|+.|+++.+..
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCc
Confidence              2456667788999999987753

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.08  E-value=3.1e-06  Score=57.57  Aligned_cols=93  Identities=15%  Similarity=0.126  Sum_probs=47.1

Q ss_pred             CCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChhhH---HHhccCCCCcEEEc--CCCccccchh
Q psy10233        104 LSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTL--SHNPCVGKIK  175 (207)
Q Consensus       104 ~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~l~l--~~n~~~~~~~  175 (207)
                      +...++|++|++++|.++....   ...+...+.++.++++.|.+.+.+..   ..+...+.|+.+++  ++|.+.....
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            3344556666666665543111   11234445666666666666543322   33345556665444  3455544444


Q ss_pred             hHHHHHHHhCCcceeccCccc
Q psy10233        176 NYRRMFINLCVNLRHLDDYPV  196 (207)
Q Consensus       176 ~~~~~~~~~~~~L~~L~~~~~  196 (207)
                      ......+..++.|+.|++...
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCcCEEeCcCC
Confidence            444445566666666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.14  E-value=0.00035  Score=46.88  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             CCCCCcEEEcCCC-ccCCcc---ccccCCCCCCccEEEccCCCCCChhh---HHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233        106 CLPVLRTLHLSHN-RLKTIE---DIEHLKDCPLLSIVDVSHNQIEDEEV---IEVFGAMPELRVLTLSHNPCVGKIKNYR  178 (207)
Q Consensus       106 ~~~~L~~L~l~~n-~i~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~l~l~~n~~~~~~~~~~  178 (207)
                      ..++|++++++++ .++...   ....+...+.|++|++++|.+++...   ...+...+.++.+++++|.+..+.....
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4578888888874 464422   12346778899999999999987433   3456678899999999999876555554


Q ss_pred             HHHHHhCCcceeccC
Q psy10233        179 RMFINLCVNLRHLDD  193 (207)
Q Consensus       179 ~~~~~~~~~L~~L~~  193 (207)
                      ...+...++|+.+++
T Consensus        95 ~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          95 VEALQSNTSLIELRI  109 (166)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCccccEEee
Confidence            555677788876444