Psyllid ID: psy10248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MGLQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEcEEEEEccEEEEEccEEEEEcccccccccEEEEEEEEEEccccccEEEEEEEEEccccccccccccccccEEEEEccEEEEEccEEEcEEEEEcccHHHHccccccccccccccEEccccccccccccccccccccccccccEEEEcccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccHEEEEEEccccccHHHHccHHHEEccccEEEcccEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccHEEEccccccccccHEcccEEEEcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEccc
Coil and Loop (DISEMBL)
mglqllsrsldpyyfkygtstsdehpvvrncypamrhiqgdiiqprdcillksgtrkkdlpFIAKVgalwenpedgEMMVSLLWyyrpehteqgtsyrdnkDEIFASrhrdinsvaciedkcYVLTYREYCRYRKKMRSIEDNVVNfkiivpplgegqyerllrqppgqvspdrvfychkvydfrtkrllknpc
Flexible Loop (DISEMBL)
MGLQLLSRSLDPYYFKygtstsdehpvVRNCYPAMRhiqgdiiqpRDCILLKsgtrkkdlpfiakvgalwenpedGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFasrhrdinsvaciedkcyvlTYREYCRYRKkmrsiednvvNFKIIVPPLGEGQYERLLRqppgqvspdrvFYCHKVYdfrtkrllknpc
Low Complexity Region (SEG)
MGLQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC
Disordered region (IsUnstruct)
*********LDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEH***********DEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQP*GQVSPDRVFYCHKVYDFRTKRL*****
Disordered Region (DISOPRED)
****************************RNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLK***
Disordered Region (DISEMBL)
MGLQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC
Disordered Region (DISPRO)
*GLQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q8TBE0	780	Bromo adjacent homology d	yes	N/A	0.871	0.216	0.48	6e-39
Q497V6	772	Bromo adjacent homology d	yes	N/A	0.871	0.218	0.48	1e-38
Q3UHR0	2643	BAH and coiled-coil domai	no	N/A	0.577	0.042	0.291	1e-08
Q9P281	2608	BAH and coiled-coil domai	no	N/A	0.448	0.033	0.347	3e-08
Q3LHL9	1658	Protein winged eye OS=Dro	no	N/A	0.448	0.052	0.322	1e-05
O74964	803	Chromatin structure-remod	yes	N/A	0.675	0.163	0.259	0.0001
Q06488	889	Chromatin structure-remod	yes	N/A	0.396	0.086	0.294	0.0004

>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens GN=BAHD1 PE=1 SV=2

 Score =  160 bits (404), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 6/175 (3%)

Query: 23  DEHPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
           +  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+S
Sbjct: 607 EPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMS 664

Query: 82  LLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
           LLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    +
Sbjct: 665 LLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAK 724

Query: 139 SIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
              + + + K  + P          R  P    P+ VF C  VYDFR  R+LKNP
Sbjct: 725 RRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNP 779

Heterochromatin protein that acts as a transcription repressor and has the ability to promote the formation of large heterochromatic domains. May act by recruiting heterochromatin proteins such as CBX5 (HP1 alpha), HDAC5 and MBD1. Represses IGF2 expression by binding to its CpG-rich P3 promoter and recruiting heterochromatin proteins. At specific stages of Listeria infection, in complex with TRIM28, corepresses interferon-stimulated genes, including IL28A, IL28B and IL29.
Homo sapiens (taxid: 9606)

>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus GN=Bahd1 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 6/175 (3%)

Query: 23  DEHPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
           +  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+S
Sbjct: 599 EPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMS 656

Query: 82  LLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
           LLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    +
Sbjct: 657 LLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAK 716

Query: 139 SIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
              + + + K  + P          R  P    P+ VF C  VYDFR  R+LKNP
Sbjct: 717 RRGEGLPSRKTALVPPSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNP 771

Heterochromatin protein that acts as a transcription repressor and has the ability to promote the formation of large heterochromatic domains. May act by recruiting heterochromatin proteins such as CBX5 (HP1 alpha), HDAC5 and MBD1. Represses IGF2 expression by binding to its CpG-rich P3 promoter and recruiting heterochromatin proteins.

Mus musculus (taxid: 10090)

>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 32/144 (22%)

Query: 47   DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
            DC +  S  R  +LP+I ++ +LWE+     M+V + W+Y PE T+ G    D K+ ++ 
Sbjct: 2523 DCAVFLSAGRP-NLPYIGRIESLWES-WGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQ 2580

Query: 107  SRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQP 166
            S H D N V  I  KC V                             +G  QYE+++R  
Sbjct: 2581 SCHEDENDVQTISHKCQV-----------------------------VGREQYEQMMRGR 2611

Query: 167  PGQVSPDRVFYCHKVYDFRTKRLL 190
              Q   D ++Y    YD  T RL+
Sbjct: 2612 KYQDQQD-LYYLAGTYDPTTGRLV 2634

Mus musculus (taxid: 10090)

>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 47   DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
            DC +  S  R  +LP+I ++ ++WE+     M+V + W+Y PE T+ G    D K+ ++ 
Sbjct: 2488 DCAVFLSAGRP-NLPYIGRIESMWES-WGSNMVVKVKWFYHPEETKLGKRQCDGKNALYQ 2545

Query: 107  SRHRDINSVACIEDKCYVLT---YREYCRYRK 135
            S H D N V  I  KC V+    Y +  R RK
Sbjct: 2546 SCHEDENDVQTISHKCQVVAREQYEQMARSRK 2577

Homo sapiens (taxid: 9606)

>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 55   TRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINS 114
            T + D P+I ++ ++WE    G  +V + W+Y PE T  G         +F S H D N 
Sbjct: 1523 TGRPDRPYIGRIESMWET-TTGNKVVRVAWFYHPEET-TGCPKLKFPGALFESPHEDEND 1580

Query: 115  VACIEDKCYVLTYREYCRY----RKKMRSIEDN 143
            V  I  +C VL +  Y        K+ +SI DN
Sbjct: 1581 VQTISHRCEVLQFGSYFEKFGADSKQYQSIYDN 1613

Functions in the determination of disk-specific identity, downstream of Hox genes. Overexpression induces ectopic wings with antero-posterior and dorso-ventral axes in the eye field. Overexpression is sufficient for ectopic expression of vg in eye disks.

Drosophila melanogaster (taxid: 7227)

>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit rsc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsc1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 3   LQLLSRSLDPYYFKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPF 62
           L+L +  LD  +F Y T +     + +N       I G ++   D +L+++       P 
Sbjct: 313 LRLEAGKLDSEFFNYETDSRASPQLPKNDIQPAVSIDGTLLNVGDWVLIRNPADSSK-PI 371

Query: 63  IAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIF-ASRHRDINSVACIEDK 121
           ++++  +W++ +D    V++ WY RPE T         ++E+F  S +RD + V+ I  +
Sbjct: 372 VSQIYRIWKS-DDDINYVTVCWYLRPEQTVHRADAVFYENEVFKTSLYRD-HPVSEIVGR 429

Query: 122 CYVLTYREYCRYRKK 136
           C+V+    Y R R K
Sbjct: 430 CFVMYITRYIRGRPK 444

Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06488|RSC2_YEAST Chromatin structure-remodeling complex subunit RSC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 61  PFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
           P + ++  LW+ P DG+  ++  WYYRPE T         K+E+  +     + V+ +  
Sbjct: 427 PIVGQIFRLWKTP-DGKQWLNACWYYRPEQTVHRVDRLFYKNEVMKTGQYRDHLVSNLVG 485

Query: 121 KCYVLTYREYCRYRKKMR 138
           KCYV+ +  Y R    M+
Sbjct: 486 KCYVIHFTRYQRGNPDMK 503

Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. RSC is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodeling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signaling pathway, for organization of the cellular cytoskeleton. This subunit is involved in meiotic sporulation through regulating IME2 expression, and is also essential for 2-micron plasmid maintenance and for normal REP1 protein localization.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
242012425	966	bromo adjacent homology domain containin	0.886	0.178	0.682	2e-65
383863458	1776	PREDICTED: uncharacterized protein LOC10	0.881	0.096	0.627	2e-62
322787657	757	hypothetical protein SINV_13606 [Solenop	0.917	0.235	0.608	4e-62
332028085	778	Bromo adjacent-like proteiny domain-cont	0.917	0.228	0.603	6e-62
189236513	1599	PREDICTED: similar to AGAP004446-PA [Tri	0.881	0.106	0.64	8e-62
307183127	1002	Bromo adjacent-like proteiny domain-cont	0.881	0.170	0.627	8e-62
350399250	1783	PREDICTED: hypothetical protein LOC10074	0.917	0.099	0.603	1e-61
328776309	1779	PREDICTED: hypothetical protein LOC10057	0.917	0.100	0.603	2e-61
270006004	885	hypothetical protein TcasGA2_TC008139 [T	0.876	0.192	0.643	3e-61
380026948	994	PREDICTED: uncharacterized protein LOC10	0.917	0.179	0.608	4e-61

>gi|242012425|ref|XP_002426933.1| bromo adjacent homology domain containing protein, putative [Pediculus humanus corporis] gi|212511162|gb|EEB14195.1| bromo adjacent homology domain containing protein, putative [Pediculus humanus corporis]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 140/173 (80%), Gaps = 1/173 (0%)

Query: 21  TSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
           T+DE PV+R CY AMRH++GD+I P+DCILLK+G R+ DLPF+AKV ALWENP+DGEMMV
Sbjct: 794 TNDEPPVMRKCYTAMRHVEGDVIHPKDCILLKAGPRRIDLPFVAKVAALWENPDDGEMMV 853

Query: 81  SLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSI 140
           SLLWYYRPEHT+QG    D +DEIFASRH+DINSVACIEDKC+VLTY EYCRYRK ++ +
Sbjct: 854 SLLWYYRPEHTDQGRQPSDQQDEIFASRHKDINSVACIEDKCFVLTYNEYCRYRKNVKRV 913

Query: 141 EDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
           ED V    + VP L E  Y R  RQPP  ++PD VF+C +VYDFR KRLLKNP
Sbjct: 914 EDGVPEKPLPVPGL-EQPYFRYQRQPPCIMAPDMVFFCRRVYDFRQKRLLKNP 965

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863458|ref|XP_003707198.1| PREDICTED: uncharacterized protein LOC100880619 [Megachile rotundata]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 136/172 (79%), Gaps = 1/172 (0%)

Query: 22   SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
            ++E   +R CY +M+H  GD+++PRDC+LLKSG RK DLPF+AK+ ALWENP+DGEMM S
Sbjct: 1605 TNEESAIRRCYASMKHESGDVLRPRDCVLLKSGPRKADLPFVAKIAALWENPDDGEMMFS 1664

Query: 82   LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
            LLWYYRPEHTEQG +  D +DE+FASRHRD NSVACIEDKCY+LT+ EYCRYRK +R IE
Sbjct: 1665 LLWYYRPEHTEQGRTQYDTEDEVFASRHRDANSVACIEDKCYILTFNEYCRYRKNLRRIE 1724

Query: 142  DNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
            + + +  +IVPP G+  Y R  RQPP  VS D V +C +VYD+R K+L+KNP
Sbjct: 1725 EGLESPGLIVPP-GDQLYPRENRQPPIPVSSDMVLFCRRVYDYRGKKLVKNP 1775

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787657|gb|EFZ13681.1| hypothetical protein SINV_13606 [Solenopsis invicta]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 15  FKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE 74
           F+     ++E   +R CY +M H  GD+++PRDC+LLKSGTRK DLP++AK+ ALWENP+
Sbjct: 579 FEAKVYLTNEETAIRRCYASMSHESGDVLRPRDCVLLKSGTRKGDLPYVAKIAALWENPD 638

Query: 75  DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYR 134
           DGEMM SLLWYYRPEHTEQG +  D++DE+FASRHRD NSVACIEDKCY+LT+ EYCRYR
Sbjct: 639 DGEMMFSLLWYYRPEHTEQGRTPHDSEDEVFASRHRDANSVACIEDKCYILTFNEYCRYR 698

Query: 135 KKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
           K +R IE+ + N  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 699 KNLRRIEEGLENPGLIVPP-GDQVYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 756

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028085|gb|EGI68136.1| Bromo adjacent-like proteiny domain-containing 1 protein [Acromyrmex echinatior]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 15  FKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE 74
           F+     ++E   +R CY +M H  GD+++PRDC+LL+SGTRK DLP++AK+ ALWENP+
Sbjct: 600 FEAKVYLTNEETAIRRCYASMNHESGDVLRPRDCVLLRSGTRKGDLPYVAKIAALWENPD 659

Query: 75  DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYR 134
           DGEMM SLLWYYRPEHTEQG +  D++DE+FASRHRD NSVACIEDKCY+LT+ EYCRYR
Sbjct: 660 DGEMMFSLLWYYRPEHTEQGRTPHDSEDEVFASRHRDANSVACIEDKCYILTFNEYCRYR 719

Query: 135 KKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
           K +R IE+ + N  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 720 KNLRRIEEGLENPGLIVPP-GDQVYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 777

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236513|ref|XP_001816051.1| PREDICTED: similar to AGAP004446-PA [Tribolium castaneum]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 133/175 (76%), Gaps = 4/175 (2%)

Query: 22   SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
            SDE  VVR CYPAMRH +GDII+ RDC+LLK+G RK DLPF+AK+  LWENPEDGEMM+S
Sbjct: 1427 SDETTVVRKCYPAMRHEEGDIIEVRDCVLLKAGPRKNDLPFVAKIAYLWENPEDGEMMMS 1486

Query: 82   LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
            LLWYYRPEHTEQG +  D  DE+FASRH+D NSVACI+DKCYVLT+ EYCRYRK +R +E
Sbjct: 1487 LLWYYRPEHTEQGRTPADQPDEVFASRHKDSNSVACIDDKCYVLTFHEYCRYRKDLRRLE 1546

Query: 142  DNVVNFKIIVPPLGEGQYERLLRQPPG--QVSPDRVFYCHKVYDFRTKRLLKNPC 194
            + +      +P      Y R  RQPP   QVS D VF+C +VYDFR KR++KNP 
Sbjct: 1547 EGIEETSPCIP--TPEPYPRCNRQPPSPIQVSSDMVFFCRRVYDFRQKRIVKNPS 1599

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183127|gb|EFN70044.1| Bromo adjacent-like proteiny domain-containing 1 protein [Camponotus floridanus]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 136/172 (79%), Gaps = 1/172 (0%)

Query: 22   SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
            ++E   +R CY +M H  GD+++PRDC+LLKSGTRK DLP++AK+ ALWENP+DGEMM S
Sbjct: 831  TNEETAIRRCYASMSHESGDVLRPRDCVLLKSGTRKGDLPYVAKIAALWENPDDGEMMFS 890

Query: 82   LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
            LLWYYRPEHTEQG +  D++DE+FASRHRD NSVACIEDKCY+LT+ EYCRYRK +R IE
Sbjct: 891  LLWYYRPEHTEQGRTPHDSEDEVFASRHRDANSVACIEDKCYILTFNEYCRYRKNLRRIE 950

Query: 142  DNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
            + + N  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 951  EGLENPGLIVPP-GDQVYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 1001

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399250|ref|XP_003485468.1| PREDICTED: hypothetical protein LOC100749826 [Bombus impatiens]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)

Query: 15   FKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE 74
            F+     ++E   +R CY +M+H  GD+++PRDC+LLKSG RK DLPF+AK+ ALWENP+
Sbjct: 1605 FEAKVYLTNEESAIRRCYASMKHESGDVLRPRDCVLLKSGPRKADLPFVAKIAALWENPD 1664

Query: 75   DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYR 134
            DGEMM SLLWYYRPEHTEQG +  D +DE+FASRHRD NSVACIEDKCY+LT+ EYCRYR
Sbjct: 1665 DGEMMFSLLWYYRPEHTEQGRTQYDTEDEVFASRHRDANSVACIEDKCYILTFNEYCRYR 1724

Query: 135  KKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
            K +R IE+ + +  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 1725 KNLRRIEEGLESPGLIVPP-GDQLYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 1782

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776309|ref|XP_003249142.1| PREDICTED: hypothetical protein LOC100577995 [Apis mellifera]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)

Query: 15   FKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE 74
            F+     ++E   +R CY +M+H  GD+++PRDC+LLKSG RK DLPF+AK+ ALWENP+
Sbjct: 1601 FEAKVYLTNEESAIRRCYASMKHESGDVLRPRDCVLLKSGPRKADLPFVAKIAALWENPD 1660

Query: 75   DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYR 134
            DGEMM SLLWYYRPEHTEQG +  D +DE+FASRHRD NSVACIEDKCY+LT+ EYCRYR
Sbjct: 1661 DGEMMFSLLWYYRPEHTEQGRTQYDTEDEVFASRHRDANSVACIEDKCYILTFNEYCRYR 1720

Query: 135  KKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
            K +R IE+ + +  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 1721 KNLRRIEEGLESPGLIVPP-GDQLYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 1778

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006004|gb|EFA02452.1| hypothetical protein TcasGA2_TC008139 [Tribolium castaneum]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 4/174 (2%)

Query: 22  SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
           SDE  VVR CYPAMRH +GDII+ RDC+LLK+G RK DLPF+AK+  LWENPEDGEMM+S
Sbjct: 713 SDETTVVRKCYPAMRHEEGDIIEVRDCVLLKAGPRKNDLPFVAKIAYLWENPEDGEMMMS 772

Query: 82  LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
           LLWYYRPEHTEQG +  D  DE+FASRH+D NSVACI+DKCYVLT+ EYCRYRK +R +E
Sbjct: 773 LLWYYRPEHTEQGRTPADQPDEVFASRHKDSNSVACIDDKCYVLTFHEYCRYRKDLRRLE 832

Query: 142 DNVVNFKIIVPPLGEGQYERLLRQPPG--QVSPDRVFYCHKVYDFRTKRLLKNP 193
           + +      +P      Y R  RQPP   QVS D VF+C +VYDFR KR++KNP
Sbjct: 833 EGIEETSPCIP--TPEPYPRCNRQPPSPIQVSSDMVFFCRRVYDFRQKRIVKNP 884

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026948|ref|XP_003697200.1| PREDICTED: uncharacterized protein LOC100865599 [Apis florea]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)

Query: 15  FKYGTSTSDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE 74
           F+     ++E   +R CY +M+H  GDI++PRDC+LLKSG RK DLPF+AK+ ALWENP+
Sbjct: 816 FEAKVYLTNEESAIRRCYASMKHESGDILRPRDCVLLKSGPRKADLPFVAKIAALWENPD 875

Query: 75  DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYR 134
           DGEMM SLLWYYRPEHTEQG +  D +DE+FASRHRD NSVACIEDKCY+LT+ EYCRYR
Sbjct: 876 DGEMMFSLLWYYRPEHTEQGRTQYDTEDEVFASRHRDANSVACIEDKCYILTFNEYCRYR 935

Query: 135 KKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
           K +R IE+ + +  +IVPP G+  Y R  RQPP  V  D V +C +VYD+R K+L+KNP
Sbjct: 936 KNLRRIEEGLESPGLIVPP-GDQLYPRENRQPPIPVPSDMVLFCRRVYDYRGKKLVKNP 993

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
FB|FBgn0052529	2529	Hers "Histone gene-specific Ep	0.876	0.067	0.551	1.7e-49
UNIPROTKB|F1NFN2	473	BAHD1 "Uncharacterized protein	0.881	0.361	0.505	2.2e-43
UNIPROTKB|F1PKB9	776	BAHD1 "Uncharacterized protein	0.865	0.216	0.505	3.3e-40
MGI|MGI:2139371	772	Bahd1 "bromo adjacent homology	0.865	0.217	0.497	3.1e-39
RGD|1563127	772	Bahd1 "bromo adjacent homology	0.865	0.217	0.497	3.1e-39
UNIPROTKB|F1SSR6	778	BAHD1 "Uncharacterized protein	0.865	0.215	0.497	3.2e-39
UNIPROTKB|Q8TBE0	780	BAHD1 "Bromo adjacent homology	0.865	0.215	0.497	3.2e-39
UNIPROTKB|F1MSG4	779	BAHD1 "Uncharacterized protein	0.865	0.215	0.497	6.8e-39
MGI|MGI:2679272	2643	Bahcc1 "BAH domain and coiled-	0.448	0.032	0.369	1.4e-09
UNIPROTKB|F1M074	1123	F1M074 "Uncharacterized protei	0.448	0.077	0.369	2e-09

FB|FBgn0052529 Hers "Histone gene-specific Epigenetic Repressor in late S phase" [Drosophila melanogaster (taxid:7227)]

 Score = 532 (192.3 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 96/174 (55%), Positives = 129/174 (74%)

Query:    22 SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
             SD+  V+R CYPAMRH++GDII+ RDC+LLK+     +LP++AKV  LW+NPEDGEMM+S
Sbjct:  2348 SDDPLVLRTCYPAMRHVEGDIIRIRDCVLLKAN-EDNELPYVAKVAHLWQNPEDGEMMMS 2406

Query:    82 LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
             LLWYYRPEHT+QG    D  DE++ASRHRD NSVAC+EDKCYVLT+ EYCRYR+++R+ E
Sbjct:  2407 LLWYYRPEHTDQGRQRNDCPDEVYASRHRDHNSVACVEDKCYVLTFSEYCRYRRRLRAAE 2466

Query:   142 DNVVNFKIIV--PPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             ++V +  I+   P +       + R  P   +P+ V +C + Y+FRT+RLLK P
Sbjct:  2467 EDVEDVSIVPRRPSIATAPGFPV-RTVPEHTNPELVMFCRRAYEFRTRRLLKLP 2519

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0006338 "chromatin remodeling" evidence=IGI;IMP;IPI

GO:0006342 "chromatin silencing" evidence=IMP

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IDA

UNIPROTKB|F1NFN2 BAHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 87/172 (50%), Positives = 117/172 (68%)

Query:    22 SDEHPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVS 81
             ++  P VR  Y A+    G+II+ RD +LLKSG RKK +P++AK+ ALWE+P+ GE+M+S
Sbjct:   302 NEPEPAVRKSYQAVER-DGEIIRVRDTVLLKSGPRKKSMPYVAKISALWEDPKTGELMMS 360

Query:    82 LLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIE 141
             LLWYYRPEHT+ G +   +++EIFASRH+D NSVACIE+KCYVLT+ EYCR+    +   
Sbjct:   361 LLWYYRPEHTQGGRNPSMHQNEIFASRHQDENSVACIEEKCYVLTFAEYCRFCALAKRRV 420

Query:   142 DNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             + +   K I+ P  E     L R+ P    P+ VF C  VYDFR  R+LKNP
Sbjct:   421 EGIPGRKAIMVPPSEEYSTPLHRKVPEDTDPELVFLCRHVYDFRHGRILKNP 472

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0031507 "heterochromatin assembly" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PKB9 BAHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 435 (158.2 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   605 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 662

Query:    81 SLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSI 140
             SLLWYYRPEH + G S   +++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    +  
Sbjct:   663 SLLWYYRPEHLQGGRSPSMHENEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRR 722

Query:   141 EDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
              + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   723 GEGLPSRKTALVPPSADYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 775

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0031507 "heterochromatin assembly" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:2139371 Bahd1 "bromo adjacent homology domain containing 1" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 3.1e-39, P = 3.1e-39
 Identities = 88/177 (49%), Positives = 115/177 (64%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   598 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 655

Query:    81 SLLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137
             SLLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    
Sbjct:   656 SLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 715

Query:   138 RSIEDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             +   + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   716 KRRGEGLPSRKTALVPPSADYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 771

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0031507 "heterochromatin assembly" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

RGD|1563127 Bahd1 "bromo adjacent homology domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 3.1e-39, P = 3.1e-39
 Identities = 88/177 (49%), Positives = 115/177 (64%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   598 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 655

Query:    81 SLLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137
             SLLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    
Sbjct:   656 SLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 715

Query:   138 RSIEDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             +   + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   716 KRRGEGLPSRKTALVPPSADYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 771

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005677 "chromatin silencing complex" evidence=IEA;ISO

GO:0031507 "heterochromatin assembly" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|F1SSR6 BAHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 3.2e-39, P = 3.2e-39
 Identities = 88/177 (49%), Positives = 115/177 (64%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   604 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 661

Query:    81 SLLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137
             SLLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    
Sbjct:   662 SLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 721

Query:   138 RSIEDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             +   + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   722 KRRGEGLPSRKTALVPPSADYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 777

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0031507 "heterochromatin assembly" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q8TBE0 BAHD1 "Bromo adjacent homology domain-containing 1 protein" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 3.2e-39, P = 3.2e-39
 Identities = 88/177 (49%), Positives = 115/177 (64%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   606 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 663

Query:    81 SLLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137
             SLLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    
Sbjct:   664 SLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 723

Query:   138 RSIEDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             +   + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   724 KRRGEGLPSRKTALVPPSADYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 779

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=IMP

GO:0005677 "chromatin silencing complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

UNIPROTKB|F1MSG4 BAHD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 423 (154.0 bits), Expect = 6.8e-39, P = 6.8e-39
 Identities = 88/177 (49%), Positives = 115/177 (64%)

Query:    23 DE-HPVVRNCYPAM-RHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMV 80
             DE  P +R  Y A+ RH  G+ I+ RD +LLKSG RK   P++AK+ ALWENPE GE+M+
Sbjct:   605 DEPEPAIRKSYQAVERH--GETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMM 662

Query:    81 SLLWYYRPEHTEQGTS---YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM 137
             SLLWYYRPEH + G S   +   ++E+FASRH+D NSVACIE+KCYVLT+ EYCR+    
Sbjct:   663 SLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMA 722

Query:   138 RSIEDNVVNFKI-IVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP 193
             +   + + + K  +VPP  +       R  P    P+ VF C  VYDFR  R+LKNP
Sbjct:   723 KRRGEGLPSRKTALVPPSVDYSTPPH-RTVPEDTDPELVFLCRHVYDFRHGRILKNP 778

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0031507 "heterochromatin assembly" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:2679272 Bahcc1 "BAH domain and coiled-coil containing 1" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 34/92 (36%), Positives = 51/92 (55%)

Query:    47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
             DC +  S  R  +LP+I ++ +LWE+     M+V + W+Y PE T+ G    D K+ ++ 
Sbjct:  2523 DCAVFLSAGRP-NLPYIGRIESLWES-WGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQ 2580

Query:   107 SRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
             S H D N V  I  KC V+  RE  +Y + MR
Sbjct:  2581 SCHEDENDVQTISHKCQVVG-RE--QYEQMMR 2609

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1M074 F1M074 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 34/92 (36%), Positives = 51/92 (55%)

Query:    47 DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA 106
             DC +  S  R  +LP+I ++ +LWE+     M+V + W+Y PE T+ G    D K+ ++ 
Sbjct:  1003 DCAVFLSAGRP-NLPYIGRIESLWES-WGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQ 1060

Query:   107 SRHRDINSVACIEDKCYVLTYREYCRYRKKMR 138
             S H D N V  I  KC V+  RE  +Y + MR
Sbjct:  1061 SCHEDENDVQTISHKCQVVG-RE--QYEQMMR 1089

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	194
cd04714	121	cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homolo	8e-43
cd04370	123	cd04370, BAH, BAH, or Bromo Adjacent Homology doma	2e-14
pfam01426	120	pfam01426, BAH, BAH domain	3e-13
smart00439	121	smart00439, BAH, Bromo adjacent homology domain	2e-12
cd04717	121	cd04717, BAH_polybromo, BAH, or Bromo Adjacent Hom	3e-12
cd04721	130	cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homol	2e-05
cd04713	146	cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homol	3e-05
cd04715	159	cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Ho	8e-04
cd04716	122	cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Ho	0.003

>gnl|CDD|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins

 Score =  139 bits (351), Expect = 8e-43
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)

Query: 40  GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRD 99
            +II+  DC+L KS  R   LP++A++ +LWE+PE G M+V + WYYRPE T+ G     
Sbjct: 1   KEIIRVGDCVLFKSPGRPS-LPYVARIESLWEDPE-GNMVVRVKWYYRPEETKGGRKPNH 58

Query: 100 NKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVV 145
            + E+FAS H+D NSV  IE KCYVLT+ EY R  +  +  +D V 
Sbjct: 59  GEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVD 104

BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 121

>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 40  GDIIQPRDCILLKSG-TRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR 98
           G   +  D + ++   + K D P+IA++  LWE+   G   V + W+YRPE T +G S  
Sbjct: 1   GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN-GSKQVKVRWFYRPEETPKGLSPF 59

Query: 99  DNKDEIFASRHRDINSVACIEDKCYVLTYREYCR 132
             + E+F S H D   V  I  KC VL   E+  
Sbjct: 60  ALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEG 93

BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions. Length = 123

>gnl|CDD|216495 pfam01426, BAH, BAH domain

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 42  IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNK 101
                D +L++     +  P++ ++  ++E+  DG  MV + W+YRPE T        NK
Sbjct: 2   TYSVGDFVLVEPDDAGE-PPYVGRIEEIFEDK-DGSKMVHVRWFYRPEETVHRLGRAFNK 59

Query: 102 DEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNV 144
           DE+F S   D   +  I  KC V+   +    + +  + E +V
Sbjct: 60  DEVFLSDECDDVPLEDIIGKCNVIIKSDPESLQPRKINGEPDV 102

This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction. Length = 120

>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 42  IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGE-MMVSLLWYYRPEHTEQGTSYRDN 100
            I   D +L++     +   +I ++  ++E  ++ E  MV + W+YRPE T    +   +
Sbjct: 1   TISVGDFVLVEPDDADE-PYYIGRIEEIFETKKNSESKMVRVRWFYRPEETVLEKAALFD 59

Query: 101 KDEIFASRHRDINSVACIEDKCYVLTYREY--CRYRKKMRSIEDNVVNFKI 149
           K+E+F S   D   ++ I  KC VL   +Y   R    +   +        
Sbjct: 60  KNEVFLSDEYDTVPLSDIIGKCNVLYKSDYPGLRPEGSIGEPDVFFCESAY 110

Length = 121

>gnl|CDD|240068 cd04717, BAH_polybromo, BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 40  GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRD 99
           G   +  DC+ + +       P I ++  LW++ EDGE      W+YRPE T    + + 
Sbjct: 1   GLQYRVGDCVYVAN-PEDPSKPIIFRIERLWKD-EDGEKFFFGCWFYRPEETFHEPTRKF 58

Query: 100 NKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIED 142
            K+E+F S   +   V  I  KC V+  ++Y + R    S ED
Sbjct: 59  YKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEISEED 101

The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 121

>gnl|CDD|240072 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 62  FIAKVGALWENPEDGEMMVSLLWY-YRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED 120
           ++A +  L+E+ + G  MV + W+    E     +    N  EIF S +  + SV CI+ 
Sbjct: 24  YVAYIEDLYED-KKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECIDG 82

Query: 121 KCYVLTYREYCRYRKKMRSIEDNVVN 146
              VLT   Y    +K +S+  N   
Sbjct: 83  LATVLTREHY----EKFQSVPKNSSE 104

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 130

>gnl|CDD|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 47  DCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ--GTSYR-DNKDE 103
           DC+LL     +K  P+IA +  +++  E+G + + + W YRPE  E+  G +++ ++  E
Sbjct: 25  DCVLLVPEDDQK--PYIAIIKDIYKQ-EEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRE 81

Query: 104 IFASRHRDINSVACIEDKCYV 124
           +F S HRD      +   C V
Sbjct: 82  LFYSFHRDEVPAESVLHPCKV 102

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 146

>gnl|CDD|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 40  GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPED-GEMMVSLLWYYRP-EHTEQGTSY 97
           G   +  D + + +G  +   P+I K+  ++E   D G+  V ++W++RP E   +    
Sbjct: 27  GVEYRLYDDVYVHNGDSE---PYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGE 83

Query: 98  RD-NKDEIFASRHRD-----INSVACIEDKCYVLTYREYCR 132
              + +E+F +  R      IN +  I  KC V+   E  R
Sbjct: 84  PKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFR 124

Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 159

>gnl|CDD|240067 cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 60  LPFIAKVGALWENPEDGEMMVSLLWYYRPEHT--EQGTSYRDNKDEIFASRHRDINSVAC 117
            PFI K+   +E   DG+   +  W+YR E T  E+  +  D K  +F S  ++ N + C
Sbjct: 19  EPFICKITEFFEG-TDGKTYFTAQWFYRAEDTVIERQATNHDKK-RVFYSEIKNDNPLDC 76

Query: 118 IEDKCYVL 125
           +  K  +L
Sbjct: 77  LISKVKIL 84

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
cd04717	121	BAH_polybromo BAH, or Bromo Adjacent Homology doma	100.0
cd04713	146	BAH_plant_3 BAH, or Bromo Adjacent Homology domain	100.0
cd04714	121	BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain,	99.98
cd04715	159	BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom	99.97
cd04721	130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	99.97
cd04716	122	BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom	99.97
PF01426	119	BAH: BAH domain; InterPro: IPR001025 The BAH (brom	99.96
cd04370	123	BAH BAH, or Bromo Adjacent Homology domain (also c	99.96
cd04709	164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	99.96
smart00439	120	BAH Bromo adjacent homology domain.	99.96
cd04710	135	BAH_fungalPHD BAH, or Bromo Adjacent Homology doma	99.94
cd04720	179	BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do	99.94
cd04708	202	BAH_plantDCM_II BAH, or Bromo Adjacent Homology do	99.93
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	99.93
cd04712	130	BAH_DCM_I BAH, or Bromo Adjacent Homology domain,	99.9
cd04760	124	BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain	99.89
cd04719	128	BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d	99.87
cd04711	137	BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai	99.82
KOG1886|consensus	464		99.7
KOG1827|consensus	629		99.57
KOG3554|consensus	693		99.21
COG5076	371	Transcription factor involved in chromatin remodel	92.79
PF09926	53	DUF2158: Uncharacterized small protein (DUF2158);	92.02
PRK13251	75	transcription attenuation protein MtrB; Provisiona	86.72
COG5475	60	Uncharacterized small protein [Function unknown]	86.59
PF02081	75	TrpBP: Tryptophan RNA-binding attenuator protein;	84.5
PTZ00112	1164	origin recognition complex 1 protein; Provisional	80.47

>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2

Probab=100.00  E-value=4.5e-33  Score=212.91  Aligned_cols=119  Identities=28%  Similarity=0.522  Sum_probs=106.7

Q ss_pred             CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248         40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE  119 (194)
Q Consensus        40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~  119 (194)
                      |.+|++||+|||.+++ .+.++|||+|.+||++. +|.++++++|||||+||.+++...+++||||+|++.|++|+++|.
T Consensus         1 g~~~~vGD~V~v~~~~-~~~~~~i~~I~~i~~~~-~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~   78 (121)
T cd04717           1 GLQYRVGDCVYVANPE-DPSKPIIFRIERLWKDE-DGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIV   78 (121)
T ss_pred             CCEEECCCEEEEeCCC-CCCCCEEEEEeEEEECC-CCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhc
Confidence            5789999999999987 24789999999999995 689999999999999999988889999999999999999999999


Q ss_pred             ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248        120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN  192 (194)
Q Consensus       120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~  192 (194)
                      |||.||+.++|.+.++                 .               +...++||+||+.||..++.+.|.
T Consensus        79 ~kc~Vl~~~~y~~~~p-----------------~---------------~~~~~dvy~ce~~y~~~~~~~~~~  119 (121)
T cd04717          79 GKCAVMDVKDYIKGRP-----------------T---------------EISEEDVYVCESRYNESAKSFKKI  119 (121)
T ss_pred             CeeEEEehHHHhcCCC-----------------C---------------CCCCCCEEEEeEEECcccccEecc
Confidence            9999999999988642                 1               224568999999999999998764

The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=100.00  E-value=9.2e-33  Score=218.12  Aligned_cols=130  Identities=25%  Similarity=0.455  Sum_probs=110.4

Q ss_pred             CcccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC---CCCCC
Q psy10248         25 HPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS---YRDNK  101 (194)
Q Consensus        25 ~~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~---~~~~~  101 (194)
                      +...+.+|+++.. +|.+|++||+|||++++  ..+||||+|.+||++. ++.++|+|+|||||+||...+.   ..+++
T Consensus         4 ~~~~~~~y~s~~~-dg~~y~vgD~Vlv~~~~--~~~pyI~~I~~i~~~~-~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~   79 (146)
T cd04713           4 GKKKKCHYTSFEK-DGNKYRLEDCVLLVPED--DQKPYIAIIKDIYKQE-EGSLKLEVQWLYRPEEIEKKKGGNWKAEDP   79 (146)
T ss_pred             CccceeeeeeEEE-CCEEEECCCEEEEeCCC--CCCCEEEEEEEEEEcC-CCCEEEEEEeeECHHHhccccccccccCCC
Confidence            3567889999995 99999999999999986  4899999999999985 6899999999999999986432   34478


Q ss_pred             CceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEcee
Q psy10248        102 DEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKV  181 (194)
Q Consensus       102 ~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~  181 (194)
                      ||||+|.+.|.||+++|+|||+|++.+++.+                  +|-                ...+++||||++
T Consensus        80 ~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~------------------~~~----------------~~~~~~F~cr~~  125 (146)
T cd04713          80 RELFYSFHRDEVPAESVLHPCKVAFVPKGKQ------------------IPL----------------RKGHSGFIVRRV  125 (146)
T ss_pred             CeEEEeCCCCcCCHHHCcceeEEEECCcccc------------------CCc----------------cCCCCeEEEEEE
Confidence            9999999999999999999999998755443                  121                124568999999


Q ss_pred             cccCCceeccC
Q psy10248        182 YDFRTKRLLKN  192 (194)
Q Consensus       182 YD~~~~~l~k~  192 (194)
                      ||...+++.++
T Consensus       126 yD~~~~~~~~~  136 (146)
T cd04713         126 YDNVNKKLWKL  136 (146)
T ss_pred             EcCCCCcEeec
Confidence            99999999875

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins

Probab=99.98  E-value=3.1e-32  Score=208.81  Aligned_cols=119  Identities=42%  Similarity=0.823  Sum_probs=104.1

Q ss_pred             CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248         40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE  119 (194)
Q Consensus        40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~  119 (194)
                      |++|++||+|+|++++ .+++||||+|++||++. +|+++++|+|||||+||.+++++.++++|||+|++.|++|+++|.
T Consensus         1 ~~~~~vGD~V~v~~~~-~~~~pyIgrI~~i~e~~-~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~   78 (121)
T cd04714           1 KEIIRVGDCVLFKSPG-RPSLPYVARIESLWEDP-EGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIE   78 (121)
T ss_pred             CCEEEcCCEEEEeCCC-CCCCCEEEEEEEEEEcC-CCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhC
Confidence            5789999999999986 24789999999999985 689999999999999999998888999999999999999999999


Q ss_pred             ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248        120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL  189 (194)
Q Consensus       120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l  189 (194)
                      |||+|++.++|.++++..+              .               .....+||+|+..||+.+..|
T Consensus        79 gkc~V~~~~ey~~~~~~~~--------------~---------------~~~~~d~~~Ce~~yn~~~~~~  119 (121)
T cd04714          79 HKCYVLTFAEYERLARVKK--------------K---------------PQDGVDFYYCAGTYNPDTGML  119 (121)
T ss_pred             cccEEEehhHheecccccC--------------C---------------CCcCCCEEEEeccCCCCcCcc
Confidence            9999999999999764211              0               013557999999999998765

BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins

Probab=99.97  E-value=1.2e-31  Score=214.34  Aligned_cols=144  Identities=20%  Similarity=0.361  Sum_probs=117.0

Q ss_pred             eeeecCCCCCCCc-ccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC-CCCceEEEEEEeeccCcC
Q psy10248         14 YFKYGTSTSDEHP-VVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENP-EDGEMMVSLLWYYRPEHT   91 (194)
Q Consensus        14 ~~~~g~~~~~~~~-~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~-~~g~~~v~v~WfyRpeE~   91 (194)
                      +|+||.|.+++.. ...++|+++. ++|.+|++||+|||++++   +++|||+|.+||++. +++.++++|+|||||+||
T Consensus         1 ~~~~~~~~g~~~~~~~~~~Y~s~~-~~g~~y~lGD~Vlv~s~~---~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~   76 (159)
T cd04715           1 EFKWGVKRGEGGKKKDGQFYRSFT-YDGVEYRLYDDVYVHNGD---SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEI   76 (159)
T ss_pred             CcccceecccccccCCceEEEEEE-ECCEEEeCCCEEEEeCCC---CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHh
Confidence            4899999999985 4567999999 599999999999999865   899999999999974 138999999999999999


Q ss_pred             CCCCC--CCCCCCceEEeCCc-----cccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccC
Q psy10248         92 EQGTS--YRDNKDEIFASRHR-----DINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLR  164 (194)
Q Consensus        92 ~~~~~--~~~~~~ELF~S~~~-----D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~  164 (194)
                      ..+..  +.+++||||+|.|.     ++||+++|.|||.|++.++|.+-      ++.   +..  .|+           
T Consensus        77 ~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~------~~~---s~~--~~~-----------  134 (159)
T cd04715          77 RMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFRN------PQP---SDG--IPT-----------  134 (159)
T ss_pred             ccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhhC------CCC---cCC--ccc-----------
Confidence            86432  56899999999885     66899999999999999999862      111   001  122           


Q ss_pred             CCCCCCCCCeEEEEceecccC
Q psy10248        165 QPPGQVSPDRVFYCHKVYDFR  185 (194)
Q Consensus       165 ~~~~~~~~~~vf~Cr~~YD~~  185 (194)
                        .++..+..+|.|||+.+.+
T Consensus       135 --~~~~~f~~~f~~~~~~~~~  153 (159)
T cd04715         135 --SADFLFPCNFDVGRCVIVD  153 (159)
T ss_pred             --cCcceeeeEEEecCceecc
Confidence              1233678899999998876

Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=99.97  E-value=5e-31  Score=204.56  Aligned_cols=115  Identities=26%  Similarity=0.437  Sum_probs=100.3

Q ss_pred             eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCC-CCCCceEEeCCccccccc
Q psy10248         38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR-DNKDEIFASRHRDINSVA  116 (194)
Q Consensus        38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~-~~~~ELF~S~~~D~~~v~  116 (194)
                      .||.+|++||+|||++++   +.+|||+|++||++. +|.++|+|+||+||+|+.++.++. +.+||||+|++.|+||++
T Consensus         3 r~~~~i~vGD~V~v~~~~---~~~~va~Ie~i~ed~-~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~   78 (130)
T cd04721           3 RNGVTISVHDFVYVLSEE---EDRYVAYIEDLYEDK-KGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVE   78 (130)
T ss_pred             cCCEEEECCCEEEEeCCC---CCcEEEEEEEEEEcC-CCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchH
Confidence            389999999999999875   678999999999995 789999999999999999976656 999999999999999999


Q ss_pred             eecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCC
Q psy10248        117 CIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRT  186 (194)
Q Consensus       117 ~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~  186 (194)
                      ||+|||+||+.++|.++.+               +++.               .....+||||+.||-..
T Consensus        79 ~I~gk~~Vls~~~y~k~~~---------------~~~~---------------~~~~~~f~C~~~~d~~~  118 (130)
T cd04721          79 CIDGLATVLTREHYEKFQS---------------VPKN---------------SSELQAYFCYRQIDNNK  118 (130)
T ss_pred             HeeeeeEECCHHHHhhhhc---------------cccC---------------ccccccEEEEEEecCCC
Confidence            9999999999999999764               1221               12356899999999753

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants

Probab=99.97  E-value=4.4e-30  Score=197.25  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=103.5

Q ss_pred             CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC-CCCCCCCceEEeCCcccccccee
Q psy10248         40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT-SYRDNKDEIFASRHRDINSVACI  118 (194)
Q Consensus        40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~-~~~~~~~ELF~S~~~D~~~v~~I  118 (194)
                      |.+|++||+|+|.+++  ..++|||||++||++. +|..+++|+|||||+||..++ ...++++|||+|++.|+||++||
T Consensus         1 g~~~~lgD~V~v~~~~--~~~~yi~rI~~i~e~~-~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I   77 (122)
T cd04716           1 GITYNLGDDAYVQGGE--GEEPFICKITEFFEGT-DGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCL   77 (122)
T ss_pred             CcEEEcCCEEEEECCC--CCCCEEEEEEEEEEcC-CCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhhe
Confidence            6789999999999997  4899999999999984 788999999999999999887 56788999999999999999999


Q ss_pred             cceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248        119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC  194 (194)
Q Consensus       119 ~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~  194 (194)
                      .|||+|++.+++.....                  .             .....+..|||+..|+....+...+|+
T Consensus        78 ~~Kc~V~~~~~~~~~~~------------------~-------------~~~~~~~df~c~~~Y~~~~~tF~~~~~  122 (122)
T cd04716          78 ISKVKILQVPPNVGTKR------------------K-------------KPNSEKCDYYYDMEYCVPYSTFQTLRN  122 (122)
T ss_pred             eeeeEEEEeCCCCCccc------------------c-------------cccCCCceEEEeeEeccchhheEeCCC
Confidence            99999999866544210                  0             011345789999999999999988885

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation

Probab=99.96  E-value=9.2e-30  Score=191.56  Aligned_cols=118  Identities=31%  Similarity=0.568  Sum_probs=99.2

Q ss_pred             EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCC-ceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248         41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDG-EMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE  119 (194)
Q Consensus        41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g-~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~  119 (194)
                      ++|++||+|||++++ ...+++||+|.+||++.+++ ..+++|+|||||+||  .......+||||+|++.|.+|+++|.
T Consensus         1 ~~~~vGD~V~v~~~~-~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~--~~~~~~~~~Elf~s~~~~~~~~~~I~   77 (119)
T PF01426_consen    1 VTYKVGDFVYVKPDD-PPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDT--SLGKTFSPRELFLSDHCDDIPVESIR   77 (119)
T ss_dssp             EEEETTSEEEEECTS-TTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGS--TTGGHSCTTEEEEEEEEEEEEGGGEE
T ss_pred             CEEeCCCEEEEeCCC-CCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccc--cccccCCCCEEEEECcEeEEehhhEE
Confidence            479999999999987 46899999999999996433 499999999999999  33344566999999999999999999


Q ss_pred             ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248        120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP  193 (194)
Q Consensus       120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p  193 (194)
                      |||.|++.++|.+..+...                               . .+++||||+.||+.++++.++|
T Consensus        78 gkc~V~~~~~~~~~~~~~~-------------------------------~-~~~~F~cr~~yd~~~~~f~~~~  119 (119)
T PF01426_consen   78 GKCNVLHLEDYEQARPYGK-------------------------------E-EPDTFFCRYAYDPQKKRFKKLP  119 (119)
T ss_dssp             EEEEEEEHHHHTTGCCHCH-------------------------------H-TTTEEEEEEEEETTTTEEEE-S
T ss_pred             eeeEEEECCcccccccccc-------------------------------C-CCCEEEEEEEEeCCcCEEeCCC
Confidence            9999999999988543100                               1 4578999999999999999887

The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....

>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)

Probab=99.96  E-value=1.7e-29  Score=189.85  Aligned_cols=121  Identities=32%  Similarity=0.561  Sum_probs=104.8

Q ss_pred             CEEEecCCEEEEEcCCC-CCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCcccccccee
Q psy10248         40 GDIIQPRDCILLKSGTR-KKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACI  118 (194)
Q Consensus        40 g~~~~vGD~Vlv~~~~~-~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I  118 (194)
                      |.+|++||+|+|++++. ..+++|||+|.+||++. ++.++++|+|||||+||..+....+++||||+|++.|++++++|
T Consensus         1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~-~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I   79 (123)
T cd04370           1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDT-NGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESI   79 (123)
T ss_pred             CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECC-CCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHh
Confidence            57899999999999861 13789999999999985 68999999999999999998877899999999999999999999


Q ss_pred             cceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248        119 EDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN  192 (194)
Q Consensus       119 ~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~  192 (194)
                      .|||.|++.++|.+..+                +.               ....+++||||++||..+++.++.
T Consensus        80 ~gkc~V~~~~~~~~~~~----------------~~---------------~~~~~~~f~~r~~yd~~~~~fk~~  122 (123)
T cd04370          80 IGKCKVLFVSEFEGLKQ----------------RP---------------NKIDTDDFFCRLAYDPTTKEFKAL  122 (123)
T ss_pred             ccccEEEechHhhcccc----------------cc---------------ccCCCCeEEEEEEECcCcceEEeC
Confidence            99999999999987542                00               114457899999999999988764

BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins

Probab=99.96  E-value=4.8e-29  Score=200.17  Aligned_cols=116  Identities=21%  Similarity=0.352  Sum_probs=99.7

Q ss_pred             EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC----------------------CCC
Q psy10248         41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT----------------------SYR   98 (194)
Q Consensus        41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~----------------------~~~   98 (194)
                      .+|++||+|||.+++  +.+++|++|++||++. ++..+|+|+|||||+||+...                      +..
T Consensus         2 ~~yrvGD~Vy~~~~~--~~Py~I~rI~e~~~~~-~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~   78 (164)
T cd04709           2 NMYRVGDYVYFESSP--NNPYLIRRIEELNKTA-RGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQ   78 (164)
T ss_pred             cEEecCCEEEEECCC--CCCCEEEEEEEEEeCC-CCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhc
Confidence            579999999999985  5678899999999985 789999999999999996531                      234


Q ss_pred             CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEE
Q psy10248         99 DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYC  178 (194)
Q Consensus        99 ~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~C  178 (194)
                      ++.+|||+|+|.|.+|+++|.|||.|+..++|.++..                +                 ...+++|||
T Consensus        79 ~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~----------------~-----------------~~~~d~Ff~  125 (164)
T cd04709          79 LRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARS----------------Y-----------------LAREDTFFY  125 (164)
T ss_pred             cCcceeEEecccccccHHHeeeeEEEEEehhhhhhhh----------------c-----------------cCCCCEEEE
Confidence            6899999999999999999999999999999987532                0                 145689999


Q ss_pred             ceecccCCceeccC
Q psy10248        179 HKVYDFRTKRLLKN  192 (194)
Q Consensus       179 r~~YD~~~~~l~k~  192 (194)
                      +.+||+.+++|+..
T Consensus       126 ~~~YDP~~k~l~~~  139 (164)
T cd04709         126 SLVYDPEQKTLLAD  139 (164)
T ss_pred             EEEECCCCCeeccc
Confidence            99999999999864

The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>smart00439 BAH Bromo adjacent homology domain

Probab=99.96  E-value=5.9e-29  Score=187.18  Aligned_cols=119  Identities=27%  Similarity=0.505  Sum_probs=102.7

Q ss_pred             EEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCc-eEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecc
Q psy10248         42 IIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGE-MMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIED  120 (194)
Q Consensus        42 ~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~-~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~g  120 (194)
                      .|++||+|||++++ ..+++|||+|.+||++. ++. .+++|+|||||+||.+++...+++||||+|++.|++++++|.|
T Consensus         1 ~~~vgd~V~v~~~~-~~~~~~i~~I~~i~~~~-~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~   78 (120)
T smart00439        1 TIRVGDFVLVEPDD-ADEPYYIGRIEEIFETK-KNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIG   78 (120)
T ss_pred             CcccCCEEEEeCCC-CCCCCEEEEEEEEEECC-CCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeee
Confidence            37899999999986 34689999999999995 566 8999999999999999888788999999999999999999999


Q ss_pred             eeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248        121 KCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP  193 (194)
Q Consensus       121 Kc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p  193 (194)
                      ||.|++.++|.+..+.      +.                         ...+++||||+.||..++++.+.|
T Consensus        79 kc~V~~~~~~~~~~~~------~~-------------------------~~~~~~f~cr~~yd~~~~~f~~~~  120 (120)
T smart00439       79 KCNVLSKSDYPGLRPE------GK-------------------------IGEPDVFFCESLYDPEKGAFKKLP  120 (120)
T ss_pred             EEEEEEcchhcccccc------cC-------------------------CCCCCeEEEEEEEccccCcccCCC
Confidence            9999999999773320      00                         024579999999999999998765

>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains

Probab=99.94  E-value=9e-27  Score=181.78  Aligned_cols=116  Identities=22%  Similarity=0.394  Sum_probs=95.9

Q ss_pred             eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCC-----------CCceEEEEEEeeccCcCCCCCCCCCCCCceEE
Q psy10248         38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPE-----------DGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFA  106 (194)
Q Consensus        38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~-----------~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~  106 (194)
                      .+|.+|++||+|||.+++ +.+|.|||||.+|+...+           .+..+++|+|||||+||....  .++.+|||+
T Consensus         7 ~~g~~~~vgD~Vyv~~~~-~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~--~~d~relf~   83 (135)
T cd04710           7 KNGELLKVNDHIYMSSEP-PGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV--VADSRLLYA   83 (135)
T ss_pred             cCCeEEeCCCEEEEecCC-CCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc--cCCceEEEE
Confidence            589999999999999986 468899999999998531           234789999999999996544  679999999


Q ss_pred             eCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCC
Q psy10248        107 SRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRT  186 (194)
Q Consensus       107 S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~  186 (194)
                      |+|.|++|+++|.|||+|...+++.....                +.                 ..++.|||.+.||+-+
T Consensus        84 S~h~d~~p~~si~gKC~V~~~~di~~l~~----------------~~-----------------~~~~~Fyf~~lyD~~~  130 (135)
T cd04710          84 SMHSDICPIGSVRGKCTVRHRDQIPDLEE----------------YK-----------------KRPNHFYFDQLFDRYI  130 (135)
T ss_pred             EeeEeeechHHEEeEEEEEEecccchhhh----------------hc-----------------cCCCEEEEEeeeCcch
Confidence            99999999999999999999876533111                11                 3468999999999998


Q ss_pred             cee
Q psy10248        187 KRL  189 (194)
Q Consensus       187 ~~l  189 (194)
                      +|.
T Consensus       131 ~r~  133 (135)
T cd04710         131 LRY  133 (135)
T ss_pred             hhc
Confidence            875

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p

Probab=99.94  E-value=2.6e-26  Score=186.89  Aligned_cols=117  Identities=19%  Similarity=0.295  Sum_probs=99.3

Q ss_pred             CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC-CCC--------CCCceEEeCC
Q psy10248         39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS-YRD--------NKDEIFASRH  109 (194)
Q Consensus        39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~-~~~--------~~~ELF~S~~  109 (194)
                      +|.+|++||+|+|++++  .+++|||+|.+|+++..++.+.+.|+|||||.|+..++. ..+        .+||||+|.|
T Consensus        49 d~~~~~vGD~Vlik~~~--~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~  126 (179)
T cd04720          49 DGLELSVGDTILVKDDV--ANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAE  126 (179)
T ss_pred             CCeEEeCCCEEEEeCCC--CCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecc
Confidence            89999999999999986  489999999999988544668999999999999987653 123        3799999999


Q ss_pred             ccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248        110 RDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL  189 (194)
Q Consensus       110 ~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l  189 (194)
                      .|.+++.+|+|||+||+.++|.+....                                +...+.+||||++||+.+|..
T Consensus       127 ~d~i~l~~Ii~k~~Vls~~ef~~~~~~--------------------------------~~~~~~~F~cR~~~d~~~~~F  174 (179)
T cd04720         127 LSEIKLKDIIDKANVLSESEFNDLSTD--------------------------------DKNGERTFFCRYACEPDGEEF  174 (179)
T ss_pred             cceEEhhheeeeEEEecHHHhhhhccc--------------------------------ccCCCceEEEEEEEeCCCCeE
Confidence            999999999999999999999874321                                114567999999999998854

The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants

Probab=99.93  E-value=4.2e-26  Score=187.85  Aligned_cols=124  Identities=21%  Similarity=0.310  Sum_probs=102.1

Q ss_pred             eCCEEEecCCEEEEEcCC--------------C--CCCCCeEEEEeeEeecCC-----CCceEEEEEEeeccCcCCCCCC
Q psy10248         38 IQGDIIQPRDCILLKSGT--------------R--KKDLPFIAKVGALWENPE-----DGEMMVSLLWYYRPEHTEQGTS   96 (194)
Q Consensus        38 ~dg~~~~vGD~Vlv~~~~--------------~--~~~~p~IarI~~i~ed~~-----~g~~~v~v~WfyRpeE~~~~~~   96 (194)
                      .+|.+|++||+|||.++-              +  ...+.+|++|.+|++..+     ....+++|+||||||||....+
T Consensus         3 ~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~~~   82 (202)
T cd04708           3 YDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPEKA   82 (202)
T ss_pred             CCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcccc
Confidence            379999999999999980              0  135789999999997532     2378999999999999976556


Q ss_pred             CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEE
Q psy10248         97 YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVF  176 (194)
Q Consensus        97 ~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf  176 (194)
                      ...+.+|||+|++.+++|+++|.|||+|+..+++.....                |.                 ..+++|
T Consensus        83 y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~----------------~~-----------------~~~~~F  129 (202)
T cd04708          83 YASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDA----------------PV-----------------IFEHVF  129 (202)
T ss_pred             eecCceeEEEeccceeechhHcceEEEEEecCcchhhhc----------------cc-----------------cCCCce
Confidence            677999999999999999999999999998866544211                11                 346899


Q ss_pred             EEceecccCCceeccCCC
Q psy10248        177 YCHKVYDFRTKRLLKNPC  194 (194)
Q Consensus       177 ~Cr~~YD~~~~~l~k~p~  194 (194)
                      ||+..||+.||.+.++|.
T Consensus       130 fc~~~Yd~~tg~f~~lP~  147 (202)
T cd04708         130 FCELLYDPAKGSLKQLPP  147 (202)
T ss_pred             EEEEEEcCCCCccCCCCc
Confidence            999999999999999984

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=99.93  E-value=4.5e-27  Score=184.65  Aligned_cols=98  Identities=23%  Similarity=0.450  Sum_probs=89.4

Q ss_pred             CCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhh
Q psy10248         58 KDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKM  137 (194)
Q Consensus        58 ~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~  137 (194)
                      +..+|||+|++||++.  |+.++.++|||||+||.+|+++.++.+|||+|++.|++++++|+|||.|+++++|.+...  
T Consensus        50 ~~~~~vArIekiW~~~--G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~--  125 (148)
T cd04718          50 SGDLWLARIEKLWEEN--GTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDASN--  125 (148)
T ss_pred             cCchHHHHHHHHHhcc--CceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcccccC--
Confidence            4678999999999973  899999999999999999999999999999999999999999999999999999986321  


Q ss_pred             cccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248        138 RSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN  192 (194)
Q Consensus       138 ~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~  192 (194)
                                                       ..++||+|+..||.++|+.++.
T Consensus       126 ---------------------------------~g~Dvy~Ce~~Yd~~~~~Fkr~  147 (148)
T cd04718         126 ---------------------------------DGDDVFLCEYEYDVHWQSFKRL  147 (148)
T ss_pred             ---------------------------------CCCceEEEEEEEhhhcCceeec
Confidence                                             4567999999999999998874

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1

Probab=99.90  E-value=6.9e-23  Score=158.98  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=97.4

Q ss_pred             CCEEEecCCEEEEEcCCCCC----------CCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeC
Q psy10248         39 QGDIIQPRDCILLKSGTRKK----------DLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASR  108 (194)
Q Consensus        39 dg~~~~vGD~Vlv~~~~~~~----------~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~  108 (194)
                      .|..|++||+|+|..++. +          .+++|++|+.||++. +|++|++++|||||+||..+.  .+.++|||+|+
T Consensus         2 ~~~~i~vGD~V~v~~d~~-~~~~~~~~~~~~~~~i~~V~~~~e~~-~g~~~~h~~W~yrp~eTv~g~--~~~~~ElFLSd   77 (130)
T cd04712           2 HGLTIRVGDVVSVERDDA-DSTTKWNDDHRWLPLVQFVEYMKKGS-DGSKMFHGRWLYRGCDTVLGN--YANERELFLTN   77 (130)
T ss_pred             CCCEEeCCCEEEEcCCCC-CccccccccccccceEEEEEEeeecC-CCceEEEEEEEEcchhccccc--cCCCceEEEec
Confidence            478899999999999872 3          489999999999995 889999999999999999987  78999999999


Q ss_pred             Cccccccc----eecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248        109 HRDINSVA----CIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF  184 (194)
Q Consensus       109 ~~D~~~v~----~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~  184 (194)
                      +++.++++    .|.+||.|.....+.           +                          ......|+|+-.|++
T Consensus        78 ~c~~~~~~~~~~~I~~k~~V~~~~~~~-----------~--------------------------~~~~~~F~r~syy~~  120 (130)
T cd04712          78 ECTCLELDLLSTEIKGVHKVDWSGTPW-----------G--------------------------KGLPEFFVRQSYYWP  120 (130)
T ss_pred             cccccccccccceeEEEEEEEEecCcC-----------C--------------------------cCCCCEEEEEEEECc
Confidence            99999999    999999998652211           1                          133457888888898


Q ss_pred             CCceeccCC
Q psy10248        185 RTKRLLKNP  193 (194)
Q Consensus       185 ~~~~l~k~p  193 (194)
                      .+|....+|
T Consensus       121 e~~~F~~l~  129 (130)
T cd04712         121 ERGAFTSLK  129 (130)
T ss_pred             cCCceEcCC
Confidence            999998877

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins

Probab=99.89  E-value=5e-23  Score=158.09  Aligned_cols=123  Identities=20%  Similarity=0.362  Sum_probs=96.1

Q ss_pred             CEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceec
Q psy10248         40 GDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIE  119 (194)
Q Consensus        40 g~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~  119 (194)
                      |.+|.+||+|+|++++ +..++|||+|+.||++. ++.+|++++||+||+||..+++  ++++|||+|++++.+++++|.
T Consensus         1 g~~i~vGD~V~v~~~~-~~~p~~I~rV~~mfe~~-~g~k~~h~rWf~Rg~dTVlG~~--~~~kEvFlsd~c~d~~l~~I~   76 (124)
T cd04760           1 GEELEAGDCVSVKPDD-PTKPLYIARVTYMWKDS-IGGKMFHAHWFCRGSDTVLGET--SDPLELFLVDECEDMALSSIH   76 (124)
T ss_pred             CCEEecCCEEEEecCC-CCCCcEEEEEhhheecC-CCCcEEEEEEEEECCccccccc--CCCcEEEeecccCCcchHHhe
Confidence            5789999999999875 47899999999999995 7899999999999999999874  899999999999999999999


Q ss_pred             ceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCcee
Q psy10248        120 DKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL  189 (194)
Q Consensus       120 gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l  189 (194)
                      +||.|+..+.=...-.     ..|.+.     |.          .   ...+..+.|||..-||+...|.
T Consensus        77 ~Kv~V~~~~p~~~w~~-----~~g~~~-----~~----------~---~~~ddg~tffyq~~yd~~~arf  123 (124)
T cd04760          77 GKVNVIYKAPSENWSM-----EGGMDE-----ED----------E---IFEDDGKTFFYQKWYDPECARF  123 (124)
T ss_pred             eeeEEEEeCCCcchhh-----hcCCCC-----cc----------c---cccCCCCeEEEEEeeChhhhcc
Confidence            9999986421100000     011110     10          0   1226779999999999987663

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p

Probab=99.87  E-value=4.1e-22  Score=154.12  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=77.9

Q ss_pred             EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCC---ceEEEEEEeeccCcCCCCC----CCCCCCCceEEeCCc---
Q psy10248         41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDG---EMMVSLLWYYRPEHTEQGT----SYRDNKDEIFASRHR---  110 (194)
Q Consensus        41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g---~~~v~v~WfyRpeE~~~~~----~~~~~~~ELF~S~~~---  110 (194)
                      .+|+|||||+|++++  ++++|||+|++||++. ++   ...++|+|||||+|++...    .+..+++|||+|++.   
T Consensus         2 ~~i~vGd~VlI~~~d--~~~~yVAkI~~i~e~~-~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~   78 (128)
T cd04719           2 LTIEVGDFVLIEGED--ADGPDVARILHLYEDG-NEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCD   78 (128)
T ss_pred             eEEecCCEEEEECCC--CCCCcEeeehhhhccc-cCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCcccc
Confidence            479999999999997  3788999999999984 43   5799999999999997533    245689999999987   


Q ss_pred             cccccceecceeEEecchhHhHh
Q psy10248        111 DINSVACIEDKCYVLTYREYCRY  133 (194)
Q Consensus       111 D~~~v~~I~gKc~Vl~~~ey~~~  133 (194)
                      |.++++||.|||.|++.++|..+
T Consensus        79 ~~i~~etI~gkc~V~~~~~y~~l  101 (128)
T cd04719          79 NDIDAETIIGKVRVEPVEPKTDL  101 (128)
T ss_pred             CcEeHHHcccEEEEEEcCCccch
Confidence            48999999999999999998764

Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins

Probab=99.82  E-value=5.1e-20  Score=142.70  Aligned_cols=100  Identities=19%  Similarity=0.391  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEeeEeecCCCC------ceEEEEEEeeccCcCCCCCC--CCCCCCceEEeCCccccccceecceeEEec--
Q psy10248         57 KKDLPFIAKVGALWENPEDG------EMMVSLLWYYRPEHTEQGTS--YRDNKDEIFASRHRDINSVACIEDKCYVLT--  126 (194)
Q Consensus        57 ~~~~p~IarI~~i~ed~~~g------~~~v~v~WfyRpeE~~~~~~--~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~--  126 (194)
                      .+.|++||||.+|....+..      ..+++|+|||||+||..+..  ...+.+|||+|+|.|++|+++|.|||+|..  
T Consensus        23 ~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~  102 (137)
T cd04711          23 APEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGE  102 (137)
T ss_pred             CCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEecc
Confidence            46889999999998764333      57899999999999998753  455679999999999999999999999994  


Q ss_pred             -----chhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248        127 -----YREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC  194 (194)
Q Consensus       127 -----~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~  194 (194)
                           +++|..                                      -..+-|||+..||.+||...-.|+
T Consensus       103 di~~s~~~y~~--------------------------------------~gpd~Fyf~~~Y~a~t~~F~d~p~  137 (137)
T cd04711         103 DLPESVQEYSG--------------------------------------GGPDRFYFLEAYNAKTKSFEDPPN  137 (137)
T ss_pred             ccchhHHHHhc--------------------------------------CCCcceEEhhhhccccCcccCCCC
Confidence                 444411                                      011359999999999999876663

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG1886|consensus

Probab=99.70  E-value=1.5e-17  Score=150.60  Aligned_cols=130  Identities=26%  Similarity=0.441  Sum_probs=104.5

Q ss_pred             cccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCC---CCCCce
Q psy10248         28 VRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYR---DNKDEI  104 (194)
Q Consensus        28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~---~~~~EL  104 (194)
                      .+.+|.++.+.+|..+..||.|++.+++ +..+||||+|..||.+...+...+.|+|||||+|+..+....   -.++||
T Consensus        36 k~~h~~t~~~~~g~~~~~~d~vllvped-~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~rel  114 (464)
T KOG1886|consen   36 KSLHFETFIYRGGRYINYGDSVLLVPED-PGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPREL  114 (464)
T ss_pred             ccccccceeeccCcccccCcceeecCCC-CCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCccc
Confidence            3556777776455555559999999987 578999999999999875579999999999999998876433   356699


Q ss_pred             EEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248        105 FASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF  184 (194)
Q Consensus       105 F~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~  184 (194)
                      |+|.|.|.+++++|.++|.|.++..|.+...       +                           ....-|+||++||.
T Consensus       115 F~SfH~De~~A~ti~~rC~V~fvp~~kqlp~-------~---------------------------~~~~~f~~r~vYd~  160 (464)
T KOG1886|consen  115 FLSFHEDEAFAETILHRCKVHFVPAYKQLPN-------R---------------------------VGHESFICRRVYDA  160 (464)
T ss_pred             cccccccchhhhhhcccceeeeccccccccc-------c---------------------------CCCCCccccccccc
Confidence            9999999999999999999999987766321       1                           12234999999999


Q ss_pred             CCceeccC
Q psy10248        185 RTKRLLKN  192 (194)
Q Consensus       185 ~~~~l~k~  192 (194)
                      -++++.+.
T Consensus       161 ~~~~~~~~  168 (464)
T KOG1886|consen  161 VTSKLRKL  168 (464)
T ss_pred             ccccccCc
Confidence            99988663

>KOG1827|consensus

Probab=99.57  E-value=3.1e-15  Score=139.98  Aligned_cols=131  Identities=27%  Similarity=0.451  Sum_probs=112.9

Q ss_pred             ccccccccc-EEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCce
Q psy10248         26 PVVRNCYPA-MRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEI  104 (194)
Q Consensus        26 ~~~~~~Y~~-~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~EL  104 (194)
                      ...+..+.. +. +||..+.+||.||+.+.. ....+.|+.|.++|+++ +|+.+..+.|||||++|.+...+.|..+||
T Consensus       174 ~~l~~~~~~~~~-i~~~~~~~gd~vlv~~~~-d~~~p~v~~Ier~w~~~-dg~k~~~~~w~~rP~~T~H~a~r~F~k~Ev  250 (629)
T KOG1827|consen  174 GGLHYHELGPVE-IDGTKYIVGDYVLVQNPA-DNLKPIVAQIERLWKLP-DGEKWPQGCWIYRPEETVHRADRKFYKQEV  250 (629)
T ss_pred             CCCCcccCCCcc-ccCcccccCceeeecCcc-cccCCceeeecccccCc-ccccccceeEeeCCccCccccccchhcccc
Confidence            344555555 55 699999999999999986 34899999999999996 899999999999999999988899999999


Q ss_pred             EEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceeccc
Q psy10248        105 FASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDF  184 (194)
Q Consensus       105 F~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~  184 (194)
                      |-+......++..|.|+|.|+.+.+|.+.++      ++                          .....||+|.+-||.
T Consensus       251 fkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p------~~--------------------------ls~~dv~lcesRyn~  298 (629)
T KOG1827|consen  251 FKTSLYRDDLVQRLLGKCYVMKPTEYISGDP------EN--------------------------LSEEDVFLCESRYNE  298 (629)
T ss_pred             eecccccccHHHHhhcceEEeehhHhhhcCc------cc--------------------------ccccceeeEEeeecc
Confidence            9999999999999999999999999988543      22                          245579999999999


Q ss_pred             CCceecc
Q psy10248        185 RTKRLLK  191 (194)
Q Consensus       185 ~~~~l~k  191 (194)
                      ..+..-|
T Consensus       299 ~~K~f~k  305 (629)
T KOG1827|consen  299 QLKKFNK  305 (629)
T ss_pred             chhhhcc
Confidence            8876643

>KOG3554|consensus

Probab=99.21  E-value=9.6e-13  Score=119.08  Aligned_cols=116  Identities=20%  Similarity=0.353  Sum_probs=95.5

Q ss_pred             EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCC---------C----------------
Q psy10248         41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQG---------T----------------   95 (194)
Q Consensus        41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~---------~----------------   95 (194)
                      .+|+|||+||+..++  +++..|-||+++-++. +|+..++|..|||..||+..         +                
T Consensus         4 n~y~vgd~vYf~~ss--s~PYliRrIEELnKTa-~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e   80 (693)
T KOG3554|consen    4 NMYRVGDYVYFENSS--SNPYLIRRIEELNKTA-NGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATE   80 (693)
T ss_pred             ccceecceEEEecCC--CChHHHHHHHHHhccc-cCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccch
Confidence            379999999999986  6788899999999984 89999999999999998742         0                


Q ss_pred             --------C-----------CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCC
Q psy10248         96 --------S-----------YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGE  156 (194)
Q Consensus        96 --------~-----------~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~  156 (194)
                              .           ...-.+|||+|.+.+..|...|.|||.|.-+.|-+...                      
T Consensus        81 ~e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~----------------------  138 (693)
T KOG3554|consen   81 AEIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQ----------------------  138 (693)
T ss_pred             hhhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHH----------------------
Confidence                    0           01246899999999999999999999998775554432                      


Q ss_pred             CccccccCCCCCCCCCCeEEEEceecccCCceeccC
Q psy10248        157 GQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKN  192 (194)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~  192 (194)
                       .|.          +.++.||...|||+.+++||.+
T Consensus       139 -~YL----------~~eDtFfySLVyDP~~kTLLAD  163 (693)
T KOG3554|consen  139 -SYL----------EKEDTFFYSLVYDPNQKTLLAD  163 (693)
T ss_pred             -hhc----------cccceeEEEeeeccchhhhhcc
Confidence             122          6678899999999999999875

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]

Probab=92.79  E-value=0.018  Score=51.74  Aligned_cols=93  Identities=13%  Similarity=-0.016  Sum_probs=80.3

Q ss_pred             eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccce
Q psy10248         38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVAC  117 (194)
Q Consensus        38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~  117 (194)
                      +++....+|+.+.+...+ ....|.++.+...|.+. +...+.-+.|||+|+++...-.+.+..+++......+...+..
T Consensus       272 i~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (371)
T COG5076         272 ITNSQAHVGAWPFLRPVS-DEEVPDYYKDIRDPMDL-STKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA  349 (371)
T ss_pred             ccccccccccccccccCC-cccccchhhhhhccccc-ccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence            466688999999999886 47899999999999985 5666669999999998777777889999999999999999999


Q ss_pred             ecceeEEecchhHhH
Q psy10248        118 IEDKCYVLTYREYCR  132 (194)
Q Consensus       118 I~gKc~Vl~~~ey~~  132 (194)
                      +.+.|.|.....+.+
T Consensus       350 ~~~~~~~~~~~~~~~  364 (371)
T COG5076         350 NVLEDFVIKKTRLIR  364 (371)
T ss_pred             cchhhhHhhhhhhhh
Confidence            999999987766655

>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function

Probab=92.02  E-value=0.27  Score=32.40  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             EecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCc
Q psy10248         43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEH   90 (194)
Q Consensus        43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE   90 (194)
                      +++||.|.+++++   ...-|..|..-   ......++.++||---.+
T Consensus         1 f~~GDvV~LKSGG---p~MTV~~v~~~---~~~~~~~v~C~WFd~~~~   42 (53)
T PF09926_consen    1 FKIGDVVQLKSGG---PRMTVTEVGPN---AGASGGWVECQWFDGHGE   42 (53)
T ss_pred             CCCCCEEEEccCC---CCeEEEEcccc---ccCCCCeEEEEeCCCCCc
Confidence            5799999999997   45556555443   124568999999975443

>PRK13251 transcription attenuation protein MtrB; Provisional

Probab=86.72  E-value=2.7  Score=29.31  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=38.1

Q ss_pred             EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248         80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY  127 (194)
Q Consensus        80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~  127 (194)
                      |.|.=.-|-.|+.-.-....+..||.+...++-.+.-.|.|||.|++.
T Consensus        19 V~vIgltrg~dtkfhhtEkLDkGEVmiaqftehtsaiKirGkA~I~t~   66 (75)
T PRK13251         19 VNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTK   66 (75)
T ss_pred             eEEEEEecCCCccchhhhhcCCCcEEEEEeecceeEEEEeceEEEEee
Confidence            555566677777544445678899999999999999999999999874

>COG5475 Uncharacterized small protein [Function unknown]

Probab=86.59  E-value=2.9  Score=27.93  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceE
Q psy10248         41 DIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIF  105 (194)
Q Consensus        41 ~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF  105 (194)
                      ..+++||.|-+++++    |       ++.-..-...-|+.++||-+-.    .+..-|.++||.
T Consensus         3 ~~FstgdvV~lKsGG----P-------~Mtvs~~ss~Gmy~C~Wf~g~g----~~~~~F~ed~Lv   52 (60)
T COG5475           3 MSFSTGDVVTLKSGG----P-------RMTVSGYSSDGMYECRWFDGYG----VKREAFHEDELV   52 (60)
T ss_pred             ceeecCcEEEeecCC----c-------eEEEeccccCCeEEEEEecCCC----ccccccccccee
Confidence            468999999999987    1       1211111233689999998754    223446666664

>PF02081 TrpBP: Tryptophan RNA-binding attenuator protein; InterPro: IPR023558 The tryptophan RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in Bacillus sp

Probab=84.50  E-value=2  Score=29.98  Aligned_cols=48  Identities=21%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248         80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY  127 (194)
Q Consensus        80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~  127 (194)
                      |.|.=.-|-.||.-.-....+..||.+...++-.+.--|.||+.|++.
T Consensus        19 V~ViGlTRG~dtkfhHtEkLDkGEVmIaQFTehtsaiKiRGkA~I~t~   66 (75)
T PF02081_consen   19 VTVIGLTRGTDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTK   66 (75)
T ss_dssp             EEEEEEESSSSSSEEEEEEE-TT-EEEEE-BSSEEEEEEESSEEEEET
T ss_pred             eEEEEEecCCcccchhhhccCCCcEEEEEeecceEEEEEeeeEEEEec
Confidence            555556666666543334567899999999999999999999999874

by binding to the leader region of the nascent trp operon mRNA []. The crystal structure of the Trp RNA-binding attenuation protein of Bacillus subtilis has been solved []. TRAP forms an oligomeric ring consisting of 11 single-domain subunits, where each subunit adopts a double-stranded beta-helix structure with the appearance of a beta-sandwich of distinct architecture and jelly-roll fold. The 11 subunits are stabilised by 11 inter-subunit strands, forming a beta-wheel with a large central hole. TRAP is activated by binding to tryptophan in clefts between adjacent beta-strands, which induces conformational changes in the protein. Activated TRAP binds an mRNA target sequence consisting of 11 (G/U)AG repeats, separated by 2-3 spacer nucleotides. The spacer nucleotides do not make direct contact with the TRAP protein, but they do influence the conformation of the RNA, which might influence the specificity of TRAP []. This entry represents the structural domain in the TRAP family of proteins.; PDB: 3ZTE_U 1GTN_H 1UTD_D 1GTF_D 1UTF_F 2ZP9_K 1C9S_Q 2EXT_A 3AQD_T 1QAW_C ....

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=80.47  E-value=3.4  Score=42.09  Aligned_cols=66  Identities=12%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             CcccccccccEEeeCCEEEecCCEEEEEcCCCCC------------------CCC---eEEEEeeEeecCCCCceEEEEE
Q psy10248         25 HPVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKK------------------DLP---FIAKVGALWENPEDGEMMVSLL   83 (194)
Q Consensus        25 ~~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~------------------~~p---~IarI~~i~ed~~~g~~~v~v~   83 (194)
                      .-.....|.++. ++++.|.+||.|+|...+...                  ...   -=|+|..|+++..+....+.|.
T Consensus       436 ~y~~g~iye~~~-in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c  514 (1164)
T PTZ00112        436 QYEDGVIYESIQ-INDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVC  514 (1164)
T ss_pred             cccCceEEEEEE-EcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEE
Confidence            345677899999 699999999999987654110                  011   2389999999866678999999


Q ss_pred             EeeccCcC
Q psy10248         84 WYYRPEHT   91 (194)
Q Consensus        84 WfyRpeE~   91 (194)
                      .||-..|.
T Consensus       515 ~y~d~~d~  522 (1164)
T PTZ00112        515 IYYDQHDA  522 (1164)
T ss_pred             EEEccccH
Confidence            99988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1w4s_A	174	Polybromo, polybromo 1 protein; BAH, bromo-associa	6e-25
4dov_A	163	ORC1, origin recognition complex subunit 1; DNA re	6e-09
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	5e-08
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	8e-05
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	2e-07
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	6e-05

>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Length = 163

 Score = 52.0 bits (124), Expect = 6e-09
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 42  IIQPRDCILLKSGTRKKDLPFIAKVGALWENPED--GEMMVSLLWYYRPEHTEQGTSYRD 99
            I+    +L++        P++AK+  L++N  +   +    + W+ R         +  
Sbjct: 38  HIKVGQFVLIQGE--DNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLL 95

Query: 100 NKD----EIFASRHRDIN---SVACIEDKCYVLTYREY 130
            +     EIF     D +   +V  I     V+     
Sbjct: 96  GRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPE 133

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330

 Score = 51.1 bits (121), Expect = 5e-08
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 38  IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSY 97
           I  ++++  DC+ +          ++A+V ALWE+ ++G+MM    W+     T  G + 
Sbjct: 465 IDEEMLEVGDCVSVIPD-DSSKPLYLARVTALWED-KNGQMMFHAHWFCAGTDTVLGAT- 521

Query: 98  RDNKDEIFASRHRDINSVACIEDKCYV 124
             +  E+F     +   ++ I  K  V
Sbjct: 522 -SDPLELFLVGECENMQLSYIHSKVKV 547

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 73  PEDGEMMVSLLWYYRPEHTEQGTSYRDNKD--EIFASRHRDINSVACIEDKCYV 124
             + ++ + L  +YRPE+T +  +   + D   ++ S    + + + ++ +C V
Sbjct: 722 VNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTV 775

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 27/152 (17%)

Query: 38  IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSY 97
           I  + ++  DC+ +      K   ++A+V ALWE+      M    W+     T  G + 
Sbjct: 154 IDAETLEVGDCVSVIPDDSSK-PLYLARVTALWED-SSNGQMFHAHWFCAGTDTVLGAT- 210

Query: 98  RDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEG 157
             +  E+F     +   ++ I  K  V+                          P     
Sbjct: 211 -SDPLELFLVDECEDMQLSYIHSKVKVI-----------------------YKAPSENWA 246

Query: 158 QYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189
               +  +   +    + ++    YD    R 
Sbjct: 247 MEGGMDPESLLEGDDGKTYFYQLWYDQDYARF 278

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 71  ENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKD--EIFASRHRDINSVACIEDKCYV 124
             P + ++ + +  +YRPE+T + T    + D   ++ S    +     ++ +C V
Sbjct: 409 GRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTV 464

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1w4s_A	174	Polybromo, polybromo 1 protein; BAH, bromo-associa	100.0
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.92
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.91
4dov_A	163	ORC1, origin recognition complex subunit 1; DNA re	99.88
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.84
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.79
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.76
1m4z_A	238	Origin recognition complex subunit 1; DNA replicat	99.58
2fl7_A	232	Regulatory protein SIR3; ORC, silencing, chromatin	99.56
3zzs_A	65	Transcription attenuation protein MTRB; transcript	88.88
3zte_A	78	Tryptophan operon RNA-binding attenuation protein;	84.6

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.92  E-value=1.8e-24  Score=211.61  Aligned_cols=147  Identities=16%  Similarity=0.271  Sum_probs=117.0

Q ss_pred             CCCCCCC--cccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCC
Q psy10248         19 TSTSDEH--PVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTS   96 (194)
Q Consensus        19 ~~~~~~~--~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~   96 (194)
                      +|.+++.  ...+.+|+++. ++|.+|+|||||||.+++ +..++|||+|++||++. +|++||+|+|||||+||.++++
T Consensus       134 ~W~G~p~k~~~~~~~Y~s~~-v~g~~i~VGD~V~v~~~d-~~~ppyIarIe~m~ed~-~g~k~~~v~Wf~rp~ET~lg~~  210 (1002)
T 3swr_A          134 SWVGEAVKTDGKKSYYKKVC-IDAETLEVGDCVSVIPDD-SSKPLYLARVTALWEDS-SNGQMFHAHWFCAGTDTVLGAT  210 (1002)
T ss_dssp             EEESCCCCCBTTEEECSEEE-ETTEEEETTCEEEECBSS-TTSCCEEEEEEEEEEET-TTEEEEEEEEEEEGGGSTTGGG
T ss_pred             cccCcccccccCceeeeEEE-ECCEEEecCCEEEEecCC-CCCCceEEEEEEEeecC-CCCeEEEEEEEecchhcccccC
Confidence            4444444  34688999999 599999999999999987 46778999999999995 7899999999999999999876


Q ss_pred             CCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeEE
Q psy10248         97 YRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVF  176 (194)
Q Consensus        97 ~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf  176 (194)
                        ++++|||+|+++|++++++|.|||.|+..+.+.....+     .+....   .+.               ..+..++|
T Consensus       211 --~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~-----~~~~~~---~~~---------------~~~~~~~f  265 (1002)
T 3swr_A          211 --SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAME-----GGMDPE---SLL---------------EGDDGKTY  265 (1002)
T ss_dssp             --SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGC-----TTCCCC---CSC---------------CCCCCTSE
T ss_pred             --CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhh-----cccccc---ccc---------------ccCCCCeE
Confidence              89999999999999999999999999986443332211     111000   011               11346899


Q ss_pred             EEceecccCCceeccCC
Q psy10248        177 YCHKVYDFRTKRLLKNP  193 (194)
Q Consensus       177 ~Cr~~YD~~~~~l~k~p  193 (194)
                      ||+..||+.+|+..+.|
T Consensus       266 fc~~~Y~~~~~~F~~lp  282 (1002)
T 3swr_A          266 FYQLWYDQDYARFESPP  282 (1002)
T ss_dssp             EEEEEEETTTTEEECCC
T ss_pred             EEEEEECCCCCcccCCC
Confidence            99999999999999887

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.91  E-value=1.6e-24  Score=216.44  Aligned_cols=155  Identities=17%  Similarity=0.319  Sum_probs=114.5

Q ss_pred             ceeeeecCCCCCCC--cccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccC
Q psy10248         12 PYYFKYGTSTSDEH--PVVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPE   89 (194)
Q Consensus        12 ~~~~~~g~~~~~~~--~~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpe   89 (194)
                      +...++ .|.+++.  ...+.+|+++. ++|.+|++||||||.+++ +..++|||+|++||++. +|++||+++|||||+
T Consensus       439 ~~~~~i-~W~G~p~k~~~~~~~Y~~~~-v~g~~~~vGD~V~v~~~d-~~~p~yiarIe~iwe~~-dg~~~~~~~WfyRp~  514 (1330)
T 3av4_A          439 QNKDRI-SWLGQPMKIEENRTYYQKVS-IDEEMLEVGDCVSVIPDD-SSKPLYLARVTALWEDK-NGQMMFHAHWFCAGT  514 (1330)
T ss_dssp             CCCSCE-EEESSCSCCC--CEEECSEE-EESSEEETTCEEEECBCC-SSCCCEEEEEEEEEEET-TCCEEEEEEEEEEGG
T ss_pred             cccCCc-eEccCceeccCCceeeeEEE-ECCEEEecCCEEEEeCCC-CCCCCEEEEEeeeeecC-CCCEEEEEEEEEchH
Confidence            334445 5566654  35688999999 599999999999998876 34578999999999995 789999999999999


Q ss_pred             cCCCCCCCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCC
Q psy10248         90 HTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQ  169 (194)
Q Consensus        90 E~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~  169 (194)
                      ||..++.  ++++|||+|+++|++|+++|.|||.|++.+++..+-.+     .+..      |..         .. + .
T Consensus       515 ETvlg~~--~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~-----~~~~------~~~---------~~-~-~  570 (1330)
T 3av4_A          515 DTVLGAT--SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME-----GGTD------PET---------TL-P-G  570 (1330)
T ss_dssp             GSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTC-----CC--------------------------
T ss_pred             Hcccccc--cCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhh-----cccC------ccc---------cc-c-c
Confidence            9988764  89999999999999999999999999986552221100     0110      000         00 0 0


Q ss_pred             CCCCeEEEEceecccCCceeccCCC
Q psy10248        170 VSPDRVFYCHKVYDFRTKRLLKNPC  194 (194)
Q Consensus       170 ~~~~~vf~Cr~~YD~~~~~l~k~p~  194 (194)
                      .....+|||+..||+.+++..+.|.
T Consensus       571 ~~~~~~F~C~~~Yd~~~~~F~~lp~  595 (1330)
T 3av4_A          571 AEDGKTYFFQLWYNQEYARFESPPK  595 (1330)
T ss_dssp             ----CCEEEEEEEETTTTEEECCCC
T ss_pred             cccCCceEEEeEECCccCccCCcCc
Confidence            0223469999999999999988773

>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*

Probab=99.88  E-value=4.1e-22  Score=157.77  Aligned_cols=126  Identities=14%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             cccccccEEee-CC---EEEecCCEEEEEcCCCCCCCCeEEEEeeEeecC--CCCceEEEEEEeeccCcCCCCCCC----
Q psy10248         28 VRNCYPAMRHI-QG---DIIQPRDCILLKSGTRKKDLPFIAKVGALWENP--EDGEMMVSLLWYYRPEHTEQGTSY----   97 (194)
Q Consensus        28 ~~~~Y~~~~~~-dg---~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~--~~g~~~v~v~WfyRpeE~~~~~~~----   97 (194)
                      ....|++|... +|   .++++||+|||++++  ...||||+|.+|+++.  ....+.+.|+||+||+|++.++..    
T Consensus        20 ~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D--~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~   97 (163)
T 4dov_A           20 FQQMYREICMKINDGSEIHIKVGQFVLIQGED--NKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGR   97 (163)
T ss_dssp             TEEEESEEEEECTTSCEEEEETTCEEEECCSS--SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCS
T ss_pred             cceeeeEEEEecCCCCCeEEeeCCEEEEeCCc--ccCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccC
Confidence            35688999842 45   899999999999987  4788999999999962  245789999999999999988643    


Q ss_pred             CCCCCceEEeCCcc---ccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCe
Q psy10248         98 RDNKDEIFASRHRD---INSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDR  174 (194)
Q Consensus        98 ~~~~~ELF~S~~~D---~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~  174 (194)
                      ..+.+|||+++|.+   .+++++|.|+|+|++.+.++.                  +|.               +...+.
T Consensus        98 ~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~------------------~p~---------------~~~~e~  144 (163)
T 4dov_A           98 SPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEV------------------IPV---------------DQKSEE  144 (163)
T ss_dssp             CCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCC------------------CCS---------------SCCCCS
T ss_pred             CCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccc------------------cCC---------------Ccccce
Confidence            35678999998874   899999999999998855443                  122               235667


Q ss_pred             EEEEceecccCCce
Q psy10248        175 VFYCHKVYDFRTKR  188 (194)
Q Consensus       175 vf~Cr~~YD~~~~~  188 (194)
                      +||-|...|-+.=+
T Consensus       145 t~FvklsWd~k~f~  158 (163)
T 4dov_A          145 TLFVKLSWNKKDFA  158 (163)
T ss_dssp             EEEEEEEECSSCEE
T ss_pred             EEEEEEEecCCcce
Confidence            99999999976533

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.84  E-value=8.4e-21  Score=185.74  Aligned_cols=135  Identities=17%  Similarity=0.343  Sum_probs=106.3

Q ss_pred             cccccccEEeeCCEEEecCCEEEEEcCCC----------------------------------------CCCCCeEEEEe
Q psy10248         28 VRNCYPAMRHIQGDIIQPRDCILLKSGTR----------------------------------------KKDLPFIAKVG   67 (194)
Q Consensus        28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~----------------------------------------~~~~p~IarI~   67 (194)
                      .+.+|.++.+ +|.+|++||+|||.++.-                                        ...|++||+|.
T Consensus       321 ~~~~~~~~~~-~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~  399 (1002)
T 3swr_A          321 SRVLYYSATK-NGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIK  399 (1002)
T ss_dssp             SCEEESEEEE-TTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEE
T ss_pred             CcEEEEEEEE-CCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEe
Confidence            4678999995 999999999999998321                                        12367899999


Q ss_pred             eEeecCC------CCceEEEEEEeeccCcCCCCC--CCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcc
Q psy10248         68 ALWENPE------DGEMMVSLLWYYRPEHTEQGT--SYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRS  139 (194)
Q Consensus        68 ~i~ed~~------~g~~~v~v~WfyRpeE~~~~~--~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~  139 (194)
                      +||.+..      ....+++|+|||||+||..+.  ....+.||||+|++.+++|+++|.|||.|+..+++......   
T Consensus       400 ~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~---  476 (1002)
T 3swr_A          400 EIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV---  476 (1002)
T ss_dssp             EEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH---
T ss_pred             EEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh---
Confidence            9997532      123999999999999997543  35568899999999999999999999999999777542210   


Q ss_pred             cccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCCC
Q psy10248        140 IEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNPC  194 (194)
Q Consensus       140 ~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p~  194 (194)
                                         |.        ...++++||| ..||..+|++.+.|.
T Consensus       477 -------------------~~--------~~~p~~fyf~-~~Yd~~~~~f~~~p~  503 (1002)
T 3swr_A          477 -------------------YS--------MGGPNRFYFL-EAYNAKSKSFEDPPN  503 (1002)
T ss_dssp             -------------------HH--------HTSSSEEEEE-EEEETTTTEEECCCS
T ss_pred             -------------------hc--------cCCCCeEEEE-EEEeCCCCeeecCcc
Confidence                               00        0145788888 999999999988774

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.79  E-value=2.5e-19  Score=171.11  Aligned_cols=98  Identities=18%  Similarity=0.409  Sum_probs=87.0

Q ss_pred             ccccccccEEeeCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCC-------CCCC
Q psy10248         27 VVRNCYPAMRHIQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGT-------SYRD   99 (194)
Q Consensus        27 ~~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~-------~~~~   99 (194)
                      ..+.+|+++. +||.+|++||+|||++++  ..+.+||+|.+||++. +|..+++|+|||||+||..+.       ...+
T Consensus        43 ~~~~~~~~~~-~~~~~~~~~d~~~v~~~~--~~~~~i~~i~~~~~~~-~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~  118 (784)
T 4ft4_B           43 KARCHYRSAK-VDNVVYCLGDDVYVKAGE--NEADYIGRITEFFEGT-DQCHYFTCRWFFRAEDTVINSLVSISVDGHKH  118 (784)
T ss_dssp             CEEEECSEEE-ETTEEEETTCEEEECCST--TSCCEEEEEEEEEEET-TSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred             ccceeeeeee-ECCEEEeCCCeEEEeCCC--CCCCEEEEEEEEEEcC-CCCEEEEEEEeeChhhhccccccccccccccc
Confidence            4577899999 699999999999999975  5788999999999985 799999999999999997542       3567


Q ss_pred             CCCceEEeCCccccccceecceeEEecch
Q psy10248        100 NKDEIFASRHRDINSVACIEDKCYVLTYR  128 (194)
Q Consensus       100 ~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~  128 (194)
                      +++|||+|++.++|+++||.|||+|+...
T Consensus       119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~  147 (784)
T 4ft4_B          119 DPRRVFLSEEKNDNVLDCIISKVKIVHVD  147 (784)
T ss_dssp             CTTBEEEEEEEEEEEGGGEEEECCEEECC
T ss_pred             ccceEEEeCcEEEechHHeeeeEEEEeeC
Confidence            89999999999999999999999998753

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.76  E-value=1.1e-18  Score=174.63  Aligned_cols=134  Identities=16%  Similarity=0.282  Sum_probs=105.1

Q ss_pred             cccccccEEeeCCEEEecCCEEEEEcCCC----------------------------------------CCCCCeEEEEe
Q psy10248         28 VRNCYPAMRHIQGDIIQPRDCILLKSGTR----------------------------------------KKDLPFIAKVG   67 (194)
Q Consensus        28 ~~~~Y~~~~~~dg~~~~vGD~Vlv~~~~~----------------------------------------~~~~p~IarI~   67 (194)
                      ...+|.++.+ +|.+|++||+|||.++.-                                        ...+.+||+|.
T Consensus       633 ~~~~Y~~~~~-~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~  711 (1330)
T 3av4_A          633 GRVYCSSITK-NGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIK  711 (1330)
T ss_dssp             SSEEEEEEEE-TTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEE
T ss_pred             CceeeeEEEE-CCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEE
Confidence            4668888885 999999999999976510                                        02456899999


Q ss_pred             eEeecCCC-----CceEEEEEEeeccCcCCCCC--CCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhccc
Q psy10248         68 ALWENPED-----GEMMVSLLWYYRPEHTEQGT--SYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSI  140 (194)
Q Consensus        68 ~i~ed~~~-----g~~~v~v~WfyRpeE~~~~~--~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~  140 (194)
                      +||.+.+.     +..+++|+|||||+||.++.  ...++.||||+|++.+++|+++|.|||.|+..+++.+...     
T Consensus       712 eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~-----  786 (1330)
T 3av4_A          712 EIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ-----  786 (1330)
T ss_dssp             ECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHH-----
T ss_pred             EEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccc-----
Confidence            99986422     57999999999999998753  3467999999999999999999999999998866544110     


Q ss_pred             ccccccccccCCCCCCCccccccCCCCCCCCCCeEEEEceecccCCceeccCC
Q psy10248        141 EDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRLLKNP  193 (194)
Q Consensus       141 ~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~vf~Cr~~YD~~~~~l~k~p  193 (194)
                                 |.               .....++|||+..||..+|++.+.|
T Consensus       787 -----------~y---------------~~~g~d~Fy~~~~Yd~~~k~~~~~P  813 (1330)
T 3av4_A          787 -----------DY---------------SQGGPDRFYFLEAYNSKTKNFEDPP  813 (1330)
T ss_dssp             -----------HH---------------HHTSTTEEEESCEEETTTTEEECCC
T ss_pred             -----------cc---------------ccCCCCeEEEEEEecccCCeeccCc
Confidence                       00               0022358999999999999987655

>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A

Probab=99.58  E-value=5.4e-15  Score=123.56  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=90.5

Q ss_pred             eCCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCC-------CCC--------CC----
Q psy10248         38 IQGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ-------GTS--------YR----   98 (194)
Q Consensus        38 ~dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~-------~~~--------~~----   98 (194)
                      .||.++++||+|+|+.+.  .+...++.|..|--...+.-..+.|.||+|..|+..       .+.        ..    
T Consensus        48 ~Dg~~~~~GDsVlv~~~~--~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~  125 (238)
T 1m4z_A           48 SDGIKLGRGDSVVMHNEA--AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKL  125 (238)
T ss_dssp             TTCCEECTTCEEEEEETT--TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHH
T ss_pred             cCCcEEeCCCEEEEecCC--CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhh
Confidence            389999999999998874  345556667666544324578899999999999976       221        23    


Q ss_pred             ----CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCe
Q psy10248         99 ----DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDR  174 (194)
Q Consensus        99 ----~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~  174 (194)
                          ...||||+|.+.+.|-+.+|+++|.|++.++|.....                                 +...+.
T Consensus       126 ~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~---------------------------------d~~~~~  172 (238)
T 1m4z_A          126 FSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG---------------------------------NVDPER  172 (238)
T ss_dssp             HHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG---------------------------------GCCTTT
T ss_pred             hhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhcc---------------------------------ccccCc
Confidence                6899999999999999999999999999999987421                                 113457


Q ss_pred             EEEEceecccCCc
Q psy10248        175 VFYCHKVYDFRTK  187 (194)
Q Consensus       175 vf~Cr~~YD~~~~  187 (194)
                      +||||++||+...
T Consensus       173 tFf~R~~cd~~~~  185 (238)
T 1m4z_A          173 DFTVRYICEPTGE  185 (238)
T ss_dssp             EEEEEEECCTTSC
T ss_pred             eEEEEEEEcCCcC
Confidence            9999999999643

>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*

Probab=99.56  E-value=4.9e-15  Score=123.37  Aligned_cols=114  Identities=10%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCC-------CCC--------CC-----
Q psy10248         39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQ-------GTS--------YR-----   98 (194)
Q Consensus        39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~-------~~~--------~~-----   98 (194)
                      ||.++++||+|+|+.+.  .+...++.|..|--...+.-..+.|.||+|..|+..       .+.        ..     
T Consensus        49 Dg~~~~~GDsVlv~~~~--~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~  126 (232)
T 2fl7_A           49 DGLSFGKGESVIFNDNV--TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKF  126 (232)
T ss_dssp             TCCEECTTCEEEEEETT--TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHH
T ss_pred             CCcEEeCCCEEEEecCC--CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhh
Confidence            89999999999998874  344556666666444223468999999999999976       221        23     


Q ss_pred             ---CCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeE
Q psy10248         99 ---DNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRV  175 (194)
Q Consensus        99 ---~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~v  175 (194)
                         ...||||+|.+.+.|-+.+|+++|.|++.++|....-                                 +...+.+
T Consensus       127 ~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~---------------------------------d~~~~~t  173 (232)
T 2fl7_A          127 FNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSI---------------------------------DKIEDRD  173 (232)
T ss_dssp             HHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC----------------------------------------CTTTE
T ss_pred             hcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcc---------------------------------cccCCce
Confidence               6899999999999999999999999999999976321                                 1144579


Q ss_pred             EEEceecccCCc
Q psy10248        176 FYCHKVYDFRTK  187 (194)
Q Consensus       176 f~Cr~~YD~~~~  187 (194)
                      ||||++||+...
T Consensus       174 Ff~R~~cd~~~~  185 (232)
T 2fl7_A          174 FLVRYACEPTAE  185 (232)
T ss_dssp             EEEEEECCTTSC
T ss_pred             EEEEEEEcCCcC
Confidence            999999999643

>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*

Probab=88.88  E-value=0.9  Score=29.89  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=37.6

Q ss_pred             EEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeEEecc
Q psy10248         80 VSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCYVLTY  127 (194)
Q Consensus        80 v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~  127 (194)
                      |.|.=.-|-.|+.-.-....+..||.+...++-.+.-.|.||+.|++.
T Consensus        13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~   60 (65)
T 3zzs_A           13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR   60 (65)
T ss_dssp             EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred             eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence            555556677777554445568899999999999999999999999874

>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1

Probab=84.60  E-value=1.5  Score=29.83  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             ecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCCCCCCCCCCCCceEEeCCccccccceecceeE
Q psy10248         44 QPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTEQGTSYRDNKDEIFASRHRDINSVACIEDKCY  123 (194)
Q Consensus        44 ~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~~~~~~~~~~~ELF~S~~~D~~~v~~I~gKc~  123 (194)
                      ..||+|.|++..                   +|   |.|.=.-|-.|+.-.-....+..||.+...++-.+.--|.||+.
T Consensus         7 ~~~dYivIkA~e-------------------ng---V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~   64 (78)
T 3zte_A            7 QSNDFVVIKAVE-------------------DG---VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEAL   64 (78)
T ss_dssp             ---CEEEEEESS-------------------SS---EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEE
T ss_pred             cccCEEEEEEec-------------------CC---eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEE
Confidence            356777777764                   23   44555556666643333446789999999999999999999999


Q ss_pred             Eecc
Q psy10248        124 VLTY  127 (194)
Q Consensus       124 Vl~~  127 (194)
                      |++.
T Consensus        65 I~t~   68 (78)
T 3zte_A           65 IQTA   68 (78)
T ss_dssp             EEET
T ss_pred             EEec
Confidence            9975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1m4za_	217	b.34.12.1 (A:) Origin-recognition complex protein	2e-06

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 34/118 (28%)

Query: 73  PEDGEMMVSLLWYYRPEHTEQGTSYRD-NKDEIFASRHRDINSVACIEDKCYVLTYREYC 131
               +         RP +          NK+E++ +       +        V+   ++ 
Sbjct: 103 AHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKW- 161

Query: 132 RYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRVFYCHKVYDFRTKRL 189
                                               G V P+R F    + +   ++ 
Sbjct: 162 --------------------------------EVLKGNVDPERDFTVRYICEPTGEKF 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1m4za_	217	Origin-recognition complex protein 120kDa subunit,	99.82
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	80.46

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.3e-21  Score=156.82  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=92.6

Q ss_pred             CCEEEecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcCC----------------------CC-C
Q psy10248         39 QGDIIQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHTE----------------------QG-T   95 (194)
Q Consensus        39 dg~~~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~~----------------------~~-~   95 (194)
                      ||.+|++||+|+|++++  ++..+|++|.+|-.+..+....+-+.||+|..|+.                      .+ +
T Consensus        49 D~~e~~~GD~Vlvk~~~--~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~~~p~e~~~~k~  126 (217)
T d1m4za_          49 DGIKLGRGDSVVMHNEA--AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLF  126 (217)
T ss_dssp             TCCEECTTCEEEEEETT--TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHH
T ss_pred             CCeEEecCCEEEEeCCC--CCCceEEEEeeeccCcccchheeeeecccchhhhccchhhhhcccceeeecCchhhhhhcc
Confidence            88999999999999876  57899999999987743334556666666665543                      11 1


Q ss_pred             CCCCCCCceEEeCCccccccceecceeEEecchhHhHhhhhhcccccccccccccCCCCCCCccccccCCCCCCCCCCeE
Q psy10248         96 SYRDNKDEIFASRHRDINSVACIEDKCYVLTYREYCRYRKKMRSIEDNVVNFKIIVPPLGEGQYERLLRQPPGQVSPDRV  175 (194)
Q Consensus        96 ~~~~~~~ELF~S~~~D~~~v~~I~gKc~Vl~~~ey~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~v  175 (194)
                      +....+||||+|++.|.|++++|+|||+|++.++|.....                                 ....+++
T Consensus       127 r~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~---------------------------------~~~~~~~  173 (217)
T d1m4za_         127 SETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG---------------------------------NVDPERD  173 (217)
T ss_dssp             HHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG---------------------------------GCCTTTE
T ss_pred             ccccCcceeEecCccceeehhheeeeEEEecHHHhcchhh---------------------------------ccCCCCe
Confidence            2357899999999999999999999999999999964321                                 1156689


Q ss_pred             EEEceecccCCceec
Q psy10248        176 FYCHKVYDFRTKRLL  190 (194)
Q Consensus       176 f~Cr~~YD~~~~~l~  190 (194)
                      ||||++||+.+++..
T Consensus       174 F~cr~~~D~~~~~f~  188 (217)
T d1m4za_         174 FTVRYICEPTGEKFV  188 (217)
T ss_dssp             EEEEEECCTTSCCCE
T ss_pred             EEEEEEEcCCCCcee
Confidence            999999999998875

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.46  E-value=1  Score=27.41  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=35.4

Q ss_pred             EecCCEEEEEcCCCCCCCCeEEEEeeEeecCCCCceEEEEEEeeccCcC
Q psy10248         43 IQPRDCILLKSGTRKKDLPFIAKVGALWENPEDGEMMVSLLWYYRPEHT   91 (194)
Q Consensus        43 ~~vGD~Vlv~~~~~~~~~p~IarI~~i~ed~~~g~~~v~v~WfyRpeE~   91 (194)
                      +++||.|-|.+++   -.-++|.|.++-.+  .+..++.+..|=|...+
T Consensus         5 f~~Gd~V~I~~Gp---F~g~~g~V~~i~~~--~~rv~V~v~~fGr~t~v   48 (58)
T d1nppa2           5 FEKGDQVRVIEGP---FMNFTGTVEEVHPE--KRKLTVMISIFGRMTPV   48 (58)
T ss_dssp             CCTTCEEEECSST---TTTCEEEEEEEEGG--GTEEEEEEEETTEEEEE
T ss_pred             ccCCCEEEEcccC---CCCCEEEEEEEcCC--CCEEEEEEeecCCCceE
Confidence            6899999999997   67799999999654  46788888888775443