Psyllid ID: psy10293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQPKP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTifdgkivaklpftpiswvqglshrnlsgedytdcSFIFLYILCTMSIRQNIQKMLgfapsrtaakqgggmfgtqpkp
Flexible Loop (DISEMBL)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKkeaiestlldknvkkkiereeerlknnnkdltmVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRtaakqgggmfgtqpkp
Low Complexity Region (SEG)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDknvkkkiereeerlknnnkDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQPKP
Disordered region (IsUnstruct)
*WADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKL******************************************TMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGF********************
Disordered Region (DISOPRED)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKL*****************************************LTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGF********************
Disordered Region (DISEMBL)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTA**************
Disordered Region (DISPRO)
MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAI***LLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAA*QGGGMF******
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWADTLLIVFISVCTALLSEGLTWLLVYRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQPKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q5I0H4	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
Q5R9B0	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
C5HGF3	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
Q921L3	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
Q9UM00	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
Q3T0N3	188	Transmembrane and coiled-	yes	N/A	0.988	0.941	0.709	7e-70
Q54TU8	186	Transmembrane and coiled-	yes	N/A	0.899	0.865	0.508	9e-43

>sp|Q5I0H4|TMCO1_RAT Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Rattus norvegicus (taxid: 10116)

>sp|Q5R9B0|TMCO1_PONAB Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Pongo abelii (taxid: 9601)

>sp|C5HGF3|TMCO1_PIG Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Sus scrofa (taxid: 9823)

>sp|Q921L3|TMCO1_MOUSE Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Mus musculus (taxid: 10090)

>sp|Q9UM00|TMCO1_HUMAN Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Homo sapiens (taxid: 9606)

>sp|Q3T0N3|TMCO1_BOVIN Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
           M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++  E+      +
Sbjct: 4   MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63

Query: 59  NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
             KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64  QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123

Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           ++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

Bos taurus (taxid: 9913)

>sp|Q54TU8|TMCO1_DICDI Transmembrane and coiled-coil domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1

 Score =  172 bits (436), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 6/167 (3%)

Query: 4   DTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEK---QMEK--KKEAIESTLLDK 58
           + L I+F+S+ ++L SEG++WLLVYRTE Y++ K  I++   Q++K   +E+  S+L  K
Sbjct: 5   EVLFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKK 64

Query: 59  -NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
            N  KKIE+ EE+LK  NK+L+  KMKSMFA+  +  AL S  N IFDG +V KLPF PI
Sbjct: 65  GNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPI 124

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRT 164
            ++QG+SHR ++G+DYTDCS  F+Y +C+M IR NIQ +LG AP +T
Sbjct: 125 GFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKT 171

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
125986959	183	GA10334 [Drosophila pseudoobscura pseudo	0.983	0.961	0.811	8e-83
307212294	183	Transmembrane and coiled-coil domains pr	0.988	0.967	0.801	1e-81
66529630	183	PREDICTED: transmembrane and coiled-coil	0.988	0.967	0.806	2e-81
350410584	183	PREDICTED: transmembrane and coiled-coil	0.988	0.967	0.795	3e-81
383862643	183	PREDICTED: transmembrane and coiled-coil	0.988	0.967	0.790	5e-81
307189349	183	Transmembrane and coiled-coil domains pr	0.988	0.967	0.801	7e-81
195438461	183	GK24167 [Drosophila willistoni] gi|19416	0.983	0.961	0.788	8e-81
195385689	183	GJ11625 [Drosophila virilis] gi|19414799	0.983	0.961	0.783	1e-80
194759376	183	GF14694 [Drosophila ananassae] gi|190615	0.983	0.961	0.788	1e-80
156543969	183	PREDICTED: transmembrane and coiled-coil	0.988	0.967	0.790	2e-80

>gi|125986959|ref|XP_001357242.1| GA10334 [Drosophila pseudoobscura pseudoobscura] gi|195156333|ref|XP_002019055.1| GL26158 [Drosophila persimilis] gi|54645573|gb|EAL34311.1| GA10334 [Drosophila pseudoobscura pseudoobscura] gi|194115208|gb|EDW37251.1| GL26158 [Drosophila persimilis]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 165/180 (91%), Gaps = 4/180 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MW+DT+LIVFISVCTA L EGLTW+LVYRTEKYQKLKTE+EKQ   +E++KE I    LD
Sbjct: 1   MWSDTILIVFISVCTAFLGEGLTWVLVYRTEKYQKLKTEVEKQSKKLERRKE-IHGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K VKKKIER+EE+LKNNN+DL++VKMKSMFA GFAFTALLSMFN+IFDG++VA+LPFTPI
Sbjct: 60  KAVKKKIERDEEKLKNNNRDLSLVKMKSMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSR A+KQGGG+FG  P
Sbjct: 120 SWIQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRAASKQGGGLFGAPP 179

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212294|gb|EFN88102.1| Transmembrane and coiled-coil domains protein 1 [Harpegnathos saltator]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/181 (80%), Positives = 163/181 (90%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LIVFIS+CTALL EGLTWL+VYRTEKYQKLK E+EKQ   +EK+KEA     LD
Sbjct: 1   MWADTILIVFISICTALLGEGLTWLMVYRTEKYQKLKAEVEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN IFDG++VA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNNIFDGRVVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNLSG+DYT+CSFIFLYILCTMSIRQNIQKMLGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLSGDDYTECSFIFLYILCTMSIRQNIQKMLGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529630|ref|XP_624879.1| PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Apis mellifera]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 163/181 (90%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LIVFIS+CTALL EGLTWL+VYRTEKYQKLK EIEKQ   +EK+KEA     LD
Sbjct: 1   MWADTILIVFISICTALLGEGLTWLMVYRTEKYQKLKAEIEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN+IFDG+IVA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRIVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL G+DYT+CSFIFLYILCTMSIRQNIQKMLGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLPGDDYTECSFIFLYILCTMSIRQNIQKMLGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410584|ref|XP_003489083.1| PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Bombus impatiens]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/181 (79%), Positives = 163/181 (90%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LIVFIS+CTALL EGLTWL+VYRTEKYQKLK E+EKQ   +EK+KEA     LD
Sbjct: 1   MWADTILIVFISICTALLGEGLTWLMVYRTEKYQKLKAEVEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN+IFDG++VA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL G+DYT+CSFIFLYILCTMSIRQNIQKMLGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLPGDDYTECSFIFLYILCTMSIRQNIQKMLGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862643|ref|XP_003706793.1| PREDICTED: transmembrane and coiled-coil domains protein 1-like [Megachile rotundata]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 143/181 (79%), Positives = 164/181 (90%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LIVFIS+CTALL EGLTWL+VYRTEKYQKLK+E+EKQ   +EK+KEA     LD
Sbjct: 1   MWADTILIVFISICTALLGEGLTWLMVYRTEKYQKLKSEVEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN+IFDG++VA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL G+DYT+CSFIFLYILCTMSIRQNIQK+LGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLPGDDYTECSFIFLYILCTMSIRQNIQKLLGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189349|gb|EFN73770.1| Transmembrane and coiled-coil domains protein 1 [Camponotus floridanus]

 Score =  305 bits (780), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 145/181 (80%), Positives = 162/181 (89%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LIVFISVCTALL EGLTWL+VYRTEKYQKLK E+EKQ   +EK+KEA     LD
Sbjct: 1   MWADTILIVFISVCTALLGEGLTWLMVYRTEKYQKLKAEVEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN IFDG+IVA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNNIFDGRIVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL G+DYT+CSFIFLYILCTMSIRQNIQK+LGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLPGDDYTECSFIFLYILCTMSIRQNIQKILGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438461|ref|XP_002067155.1| GK24167 [Drosophila willistoni] gi|194163240|gb|EDW78141.1| GK24167 [Drosophila willistoni]

 Score =  304 bits (779), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 165/180 (91%), Gaps = 4/180 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MW+DT+LIVFISVCTA L EGLTW+LVYRTEKYQKLKTE+EKQ   +E++KE I    LD
Sbjct: 1   MWSDTILIVFISVCTAFLGEGLTWVLVYRTEKYQKLKTEVEKQSKKLERRKE-IHGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K+VKKKIER+EE+LKNNN+DL++VKMKSMFA GFAFTALLSMFN+IFDG++VA+LPFTPI
Sbjct: 60  KSVKKKIERDEEKLKNNNRDLSLVKMKSMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL+G+DYTDCSFIFLYILCTMSIRQNIQK+LGFAPSR A+KQG G+FG  P
Sbjct: 120 SWIQGLSHRNLTGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGVGLFGPAP 179

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385689|ref|XP_002051537.1| GJ11625 [Drosophila virilis] gi|194147994|gb|EDW63692.1| GJ11625 [Drosophila virilis]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/180 (78%), Positives = 163/180 (90%), Gaps = 4/180 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MW+DT LIVFIS+CTA L EGLTWLLVYRTEKYQ+LKTE++KQ   +E++KE      LD
Sbjct: 1   MWSDTFLIVFISICTAFLGEGLTWLLVYRTEKYQRLKTEVDKQSKKLERRKET-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K+VKKKIER EE+LKNNN+DL++VKMKSMFA GFAFTALLSMFN+IFDG++VA+LPFTPI
Sbjct: 60  KSVKKKIERYEEKLKNNNRDLSLVKMKSMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNLSG+DYTDCSFIFLYILCTMSIRQNIQK+LGFAPSR A+KQGGG+FG  P
Sbjct: 120 SWIQGLSHRNLSGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGGLFGPAP 179

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759376|ref|XP_001961925.1| GF14694 [Drosophila ananassae] gi|190615622|gb|EDV31146.1| GF14694 [Drosophila ananassae]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 164/180 (91%), Gaps = 4/180 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MW+DT+LIVFISVCTA L EGLTW+LVYRTEKYQKLKTE+EKQ   +E++KE I    LD
Sbjct: 1   MWSDTILIVFISVCTAFLGEGLTWVLVYRTEKYQKLKTEVEKQSKKLERRKE-IHGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K VKKKIER+EE+LKNNN+DL++VKMKSMFA GFAFTALLSMFN+IFDG++VA+LPFTPI
Sbjct: 60  KAVKKKIERDEEKLKNNNRDLSLVKMKSMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL+G+DYTDCSFIFLYILCTMSIRQNIQK+LGFAPSR A+KQG G+FG  P
Sbjct: 120 SWIQGLSHRNLAGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGVGLFGPAP 179

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543969|ref|XP_001604599.1| PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Nasonia vitripennis]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/181 (79%), Positives = 163/181 (90%), Gaps = 4/181 (2%)

Query: 1   MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
           MWADT+LI+FIS+CTALL EGLTWL+VYRTEKYQKLK E+EKQ   +EK+KEA     LD
Sbjct: 1   MWADTVLILFISICTALLGEGLTWLMVYRTEKYQKLKAEVEKQSKKLEKRKEA-HGDSLD 59

Query: 58  KNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
           K  KKKIEREEERLKNNN+DL++VKMKSMFAIGFAFTALLSMFN+IFDG+IVA+LPF PI
Sbjct: 60  KQQKKKIEREEERLKNNNRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRIVARLPFVPI 119

Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
           SW+QGLSHRNL G+DYT+CSFIFLYILCTMSIRQNIQK+LGFAPSRTA+KQ G +FG  P
Sbjct: 120 SWIQGLSHRNLPGDDYTECSFIFLYILCTMSIRQNIQKLLGFAPSRTASKQSGSIFGPPP 179

Query: 178 K 178
           +
Sbjct: 180 Q 180

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
FB|FBgn0032746	183	CG10470 [Drosophila melanogast	0.983	0.961	0.7	6e-64
UNIPROTKB|E1C8A8	188	TMCO1 "Uncharacterized protein	0.988	0.941	0.662	3.5e-59
ZFIN|ZDB-GENE-050417-344	188	tmco1 "transmembrane and coile	0.988	0.941	0.651	5.7e-59
UNIPROTKB|Q3T0N3	188	TMCO1 "Transmembrane and coile	0.983	0.936	0.655	5.1e-58
UNIPROTKB|E2RGT2	188	TMCO1 "Uncharacterized protein	0.983	0.936	0.655	5.1e-58
UNIPROTKB|J9JIE6	239	TMCO1 "Transmembrane and coile	0.983	0.736	0.655	5.1e-58
UNIPROTKB|Q9UM00	188	TMCO1 "Transmembrane and coile	0.983	0.936	0.655	5.1e-58
UNIPROTKB|C5HGF3	188	TMCO1 "Transmembrane and coile	0.983	0.936	0.655	5.1e-58
MGI|MGI:1921173	188	Tmco1 "transmembrane and coile	0.983	0.936	0.655	5.1e-58
RGD|1359178	188	Tmco1 "transmembrane and coile	0.983	0.936	0.655	5.1e-58

FB|FBgn0032746 CG10470 [Drosophila melanogaster (taxid:7227)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 126/180 (70%), Positives = 146/180 (81%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             MW+DT+LIVFISVCTA L EGLTW++VYRTEKYQKLKTE+EKQ   +E++KE I    LD
Sbjct:     1 MWSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERRKE-IHGDSLD 59

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL++VKMK+MFA GFAFTALLSMFN+IFDG++VA+LPFTPI
Sbjct:    60 KAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLSMFNSIFDGRVVAQLPFTPI 119

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             SW+QGLSHRNLSG+DYTDCSFIFLYILCTMSIRQNIQK+LGFAPSR A+KQG G+FG  P
Sbjct:   120 SWIQGLSHRNLSGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGVGLFGPAP 179

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1C8A8 TMCO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 120/181 (66%), Positives = 140/181 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPF P+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFIPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL GEDYTDCSFIFLYILCTMSIRQNIQKMLG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGEDYTDCSFIFLYILCTMSIRQNIQKMLGLAPSRAATKQAGGFLGPPP 182

Query:   178 K 178
             +
Sbjct:   183 Q 183

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-344 tmco1 "transmembrane and coiled-coil domains 1" [Danio rerio (taxid:7955)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/181 (65%), Positives = 140/181 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADT+LIVFIS+CTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTILIVFISICTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPF P+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFVPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL GEDYTDCSFIFLYILCTMSIRQNIQKMLG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGEDYTDCSFIFLYILCTMSIRQNIQKMLGLAPSRAATKQAGGFLGPPP 182

Query:   178 K 178
             +
Sbjct:   183 Q 183

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3T0N3 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RGT2 TMCO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9JIE6 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:    55 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 113

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:   114 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 173

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   174 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 233

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9UM00 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|C5HGF3 TMCO1 "Transmembrane and coiled-coil domains protein 1" [Sus scrofa (taxid:9823)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921173 Tmco1 "transmembrane and coiled-coil domains 1" [Mus musculus (taxid:10090)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1359178 Tmco1 "transmembrane and coiled-coil domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/180 (65%), Positives = 139/180 (77%)

Query:     1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLD 57
             M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ   +EKKKE I  +   
Sbjct:     4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA-G 62

Query:    58 XXXXXXXXXXXXXXXXXXXDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
                                DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+
Sbjct:    63 RQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPL 122

Query:   118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
             S++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG  G  P
Sbjct:   123 SYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54TU8	TMCO1_DICDI	No assigned EC number	0.5089	0.8994	0.8655	yes	N/A
C5HGF3	TMCO1_PIG	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A
Q9UM00	TMCO1_HUMAN	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A
Q3T0N3	TMCO1_BOVIN	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A
Q921L3	TMCO1_MOUSE	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A
Q5R9B0	TMCO1_PONAB	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A
Q5I0H4	TMCO1_RAT	No assigned EC number	0.7094	0.9888	0.9414	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
pfam01956	168	pfam01956, DUF106, Integral membrane protein DUF10	4e-48

>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106

 Score =  153 bits (389), Expect = 4e-48
 Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 5   TLLIVFISVCTALLSEGLTWLLVYRT-EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKK 63
            ++I+ I +   LLSE L WLL+ R  EKYQK + EI+K+  + ++       DK   KK
Sbjct: 16  FIVILLIGILRGLLSELLQWLLIDRKMEKYQKREKEIQKRARELRKN-----GDKLSPKK 70

Query: 64  IEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGL 123
            E+ +E L  + K++ M  MK  FAI      +    N+ F G +VAKLPF      +G+
Sbjct: 71  FEKRQEELMEDQKEMMMDMMKPNFAIMIPQILIFGWINSFFSGFVVAKLPFPLTGRFKGM 130

Query: 124 SHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAP 161
             R + G D TD S I  Y LC+  +RQ IQK+LGFA 
Sbjct: 131 LQRGVDGLDVTDVSSISWYFLCSFGLRQVIQKLLGFAN 168

This archaebacterial protein family has no known function. Members are predicted to be integral membrane proteins. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG3312|consensus	186		100.0
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	100.0
COG1422	201	Predicted membrane protein [Function unknown]	100.0
KOG3188|consensus	246		99.7
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	98.03
PRK02201	357	putative inner membrane protein translocase compon	96.84
COG1422	201	Predicted membrane protein [Function unknown]	95.89
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	95.12
PRK01318	521	membrane protein insertase; Provisional	94.83
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	94.73
PRK01622	256	OxaA-like protein precursor; Validated	94.39
PRK00145	223	putative inner membrane protein translocase compon	94.2
PRK02944	255	OxaA-like protein precursor; Validated	94.12
PRK02654	375	putative inner membrane protein translocase compon	93.52
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	93.29
PRK01315	329	putative inner membrane protein translocase compon	91.25
PRK02463	307	OxaA-like protein precursor; Provisional	91.09
PRK00247	429	putative inner membrane protein translocase compon	90.66
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	90.25
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	90.05
PRK03449	304	putative inner membrane protein translocase compon	89.99
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	87.73
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	87.52
PRK01001	795	putative inner membrane protein translocase compon	86.73
KOG4253|consensus	175		86.15
PRK11546	143	zraP zinc resistance protein; Provisional	85.38
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	85.0
PRK00888	105	ftsB cell division protein FtsB; Reviewed	84.74
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	82.21
PF14282	106	FlxA: FlxA-like protein	82.13
PF06476	115	DUF1090: Protein of unknown function (DUF1090); In	82.01
PRK06342	160	transcription elongation factor regulatory protein	81.56
PRK04654	214	sec-independent translocase; Provisional	81.16

>KOG3312|consensus

Probab=100.00  E-value=1.6e-66  Score=409.08  Aligned_cols=177  Identities=75%  Similarity=1.192  Sum_probs=172.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHH
Q psy10293          1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKD   77 (179)
Q Consensus         1 ~~~d~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~---~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~   77 (179)
                      ||+|+++|++||++||+++|+++|+||||+++|++|++|++++   +|++|+..|++ .+|.++||+||.||++++.|||
T Consensus         4 m~aDtlliv~Is~cTAl~~EgitWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~~~~s-~~k~~kkKieR~Ee~LK~~nRD   82 (186)
T KOG3312|consen    4 MYADTLLIVFISFCTALLGEGITWVLVYRTDKYKRLKAEVDKQSKKLEKKKEENGDS-NDKSKKKKIERVEEKLKNNNRD   82 (186)
T ss_pred             cccceeeeeHHHHHHHHHhCCceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhcccc-hhhHHHHHHHHHHHHHhccccc
Confidence            7999999999999999999999999999999999999999998   89999988887 7889999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHh
Q psy10293         78 LTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKML  157 (179)
Q Consensus        78 l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlL  157 (179)
                      |+++|||+|+++++.+.++++++|+.|+|+|||||||.|+.++++++||||.|+|.||||++|+|+||+|++||||||+|
T Consensus        83 lSl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~TDCSfiFLYiLCtmsiRqNlQK~L  162 (186)
T KOG3312|consen   83 LSLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDMTDCSFIFLYILCTMSIRQNLQKIL  162 (186)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhcCCCCCCCCCC
Q psy10293        158 GFAPSRTAAKQGGGMFGTQPK  178 (179)
Q Consensus       158 g~~~s~~~~~~~~~~~~~~~~  178 (179)
                      |++|||+|++|++|+|+|||+
T Consensus       163 GfaPsRaaa~q~~~~~~P~p~  183 (186)
T KOG3312|consen  163 GFAPSRAAAKQGGGFPGPPPS  183 (186)
T ss_pred             CcCCchhHhhcCCCCCCCCCc
Confidence            999999999999999988874

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=100.00  E-value=3e-41  Score=269.81  Aligned_cols=153  Identities=31%  Similarity=0.482  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293          4 DTLLIVFISVCTALLSEGLTWLLVYRT-EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK   82 (179)
Q Consensus         4 d~l~I~~~a~~t~l~se~ls~~Lvyr~-e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k   82 (179)
                      -+++|+++|+++++++|+++|.+|||+ +++++.++++++..+++++.     .+..+.+|+|+.|+++.+.+.++++.+
T Consensus        15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~   89 (168)
T PF01956_consen   15 ITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKN-----GDFKKPKKLEKRQMELMEKQQEMMMMM   89 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHc-----CCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999887 66666666666655555552     245678999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCC
Q psy10293         83 MKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAP  161 (179)
Q Consensus        83 ~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~  161 (179)
                      ||||++++++++++|+|++++|+|.+|+|+||+|+.+|+.++|||+++.|++||||++|||||+||+|+++||+||.+|
T Consensus        90 mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYfL~s~~~~~vi~k~lg~~n  168 (168)
T PF01956_consen   90 MKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYFLCSFGLRQVIRKLLGENN  168 (168)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999986

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>COG1422 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=219.81  Aligned_cols=152  Identities=22%  Similarity=0.253  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhh
Q psy10293          5 TLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMK   84 (179)
Q Consensus         5 ~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k   84 (179)
                      .++|+++|++||+++++++++++ |.|+++++|+++++.+|+.+||+.+  .|.++-||+|+.|+|+...|+||+...||
T Consensus        47 ~lvilV~avi~gl~~~i~~~~li-D~ekm~~~qk~m~efq~e~~eA~~~--~d~~~lkkLq~~qmem~~~Q~elmk~qfk  123 (201)
T COG1422          47 HLVILVAAVITGLYITILQKLLI-DQEKMKELQKMMKEFQKEFREAQES--GDMKKLKKLQEKQMEMMDDQRELMKMQFK  123 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            47899999999999999999999 9999999999999999999998722  13345555555555666777888888899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCcccccc--cccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCCC
Q psy10293         85 SMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWV--QGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPS  162 (179)
Q Consensus        85 ~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~--~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~s  162 (179)
                      ||+++++++|++|+|+..+..+....+-|++.+.|.  +.+.|.++.|+.   .+|++||||||++++|++||.||++..
T Consensus       124 PM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gWi~WYfLcS~~vs~ilrk~l~i~~~  200 (201)
T COG1422         124 PMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDF---LGWIGWYFLCSFVVSQILRKVLNIAVF  200 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccc---hHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999955555555557777777666554  777899998887   899999999999999999999999864

>KOG3188|consensus

Probab=99.70  E-value=1.3e-16  Score=132.07  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCC--CCCchhHHHHHHHHHhhhHHHHH
Q psy10293         77 DLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGE--DYTDCSFIFLYILCTMSIRQNIQ  154 (179)
Q Consensus        77 ~l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~--d~td~s~i~wYfLcsm~~r~~iq  154 (179)
                      .+.|.+||.++...+|.+++++|+|.+|+|++..|+||+.+..|+.|.|||++..  |+.|+|+++|||||-+|+|.++.
T Consensus       106 smlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~~LDv~wVSS~SWYFLnvfGLrsiys  185 (246)
T KOG3188|consen  106 SMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQDLDVSWVSSASWYFLNVFGLRSIYS  185 (246)
T ss_pred             HHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhhhcchhHhhhhHHHHHHHhhhHHHHH
Confidence            3567889999999999999999999999999999999999999999999999865  66899999999999999999999


Q ss_pred             HHhCCCC
Q psy10293        155 KMLGFAP  161 (179)
Q Consensus       155 KlLg~~~  161 (179)
                      .+||.++
T Consensus       186 LiLG~~N  192 (246)
T KOG3188|consen  186 LILGEEN  192 (246)
T ss_pred             HHhcccc
Confidence            9999776

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=98.03  E-value=1e-05  Score=64.86  Aligned_cols=114  Identities=17%  Similarity=0.144  Sum_probs=37.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHh-hhhhhc-hhHHHHHHHHHHHHHHhhHHHHHHhh----hHHHHHHHHHHHHHHHHHH
Q psy10293         29 RTEKYQKLKTEIEKQMEKKKEAI-ESTLLD-KNVKKKIEREEERLKNNNKDLTMVKM----KSMFAIGFAFTALLSMFNT  102 (179)
Q Consensus        29 r~e~~~~l~~e~~~~~ek~k~~~-~~~~~~-k~~~kkler~e~~l~~~~~~l~~~k~----k~m~~~~l~~i~if~l~~~  102 (179)
                      ..++++++++|+++..+++.... .|+.-. -+.++|++++++|+++++++....+.    .-..+..+.+.+.+..+..
T Consensus        38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (161)
T PF04420_consen   38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRF  117 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence            45677777777777766554421 111100 15778899999999999988886552    2233344455555557777


Q ss_pred             hhccccccccCCccc-ccccccc--cCCCCCCCCCchhHHHHHHHHH
Q psy10293        103 IFDGKIVAKLPFTPI-SWVQGLS--HRNLSGEDYTDCSFIFLYILCT  146 (179)
Q Consensus       103 ~f~g~~VaklPF~pi-~~~~~~~--~rgL~g~d~td~s~i~wYfLcs  146 (179)
                      ||-..+|..+|-.-+ .|++.+.  -++..|    .+|-.+|=+.|+
T Consensus       118 ~~rk~pV~~lp~~~~p~p~~~lLSfP~~~~g----aVsi~~W~~ac~  160 (161)
T PF04420_consen  118 WYRKTPVFYLPKGWFPWPFEWLLSFPTAPLG----AVSITVWLFACN  160 (161)
T ss_dssp             -----------------------------------------------
T ss_pred             eecCceEEEECchhhHHHHHHheecccCCCC----ceehHHHHHHhc
Confidence            888779999995555 5665554  344334    478899988885

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=96.84  E-value=0.05  Score=49.01  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hh
Q psy10293          7 LIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KM   83 (179)
Q Consensus         7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~   83 (179)
                      .|+++.+++=++.--+++.-.-.+++++++|-|+++.+||.|+.+       ++.+..++.++++.++.+|-...   -+
T Consensus       136 aII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~-------~d~~~~~k~q~e~~~Lykk~ginP~~gc  208 (357)
T PRK02201        136 AIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYK-------KDKQMKQRKQQEIQELYKKHNISPFSPF  208 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc-------CCHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            344444444444444455555567788888888888877776532       33444555666666666655522   25


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q psy10293         84 KSMFAIGFAFTALLSMFNT  102 (179)
Q Consensus        84 k~m~~~~l~~i~if~l~~~  102 (179)
                      -|+++-+.+++++|..+.+
T Consensus       209 lP~LiQ~Pif~aly~vl~~  227 (357)
T PRK02201        209 VQMFVTLPIFIAVYRVVQS  227 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5666666666666655553

>COG1422 Predicted membrane protein [Function unknown]

Probab=95.89  E-value=0.24  Score=41.37  Aligned_cols=81  Identities=15%  Similarity=0.080  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh--hhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH
Q psy10293         13 VCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIE--STLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIG   90 (179)
Q Consensus        13 ~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~--~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~   90 (179)
                      +++|.+..+..-++=|..-++    ++|++.+|++||-+.  .+..+++|++|+||+|++.+++.++ ....||-.+==|
T Consensus        51 lV~avi~gl~~~i~~~~liD~----ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~-Q~elmk~qfkPM  125 (201)
T COG1422          51 LVAAVITGLYITILQKLLIDQ----EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDD-QRELMKMQFKPM  125 (201)
T ss_pred             HHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHhhhhH
Confidence            344555555555554444333    555566666655442  3336667999999988888866544 333466666666


Q ss_pred             HHHHHHHH
Q psy10293         91 FAFTALLS   98 (179)
Q Consensus        91 l~~i~if~   98 (179)
                      +.++++.-
T Consensus       126 ~~~~v~tI  133 (201)
T COG1422         126 LYISVLTI  133 (201)
T ss_pred             HHHHHHHH
Confidence            65555553

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=95.12  E-value=0.32  Score=38.60  Aligned_cols=133  Identities=14%  Similarity=0.017  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHH
Q psy10293         10 FISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAI   89 (179)
Q Consensus        10 ~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~   89 (179)
                      ++-+++|+++.+++-++=+.. -+++ .++.++..++.+++. ..+.++++.++.++.|++-+.+.++-.-. ++.++=-
T Consensus        17 i~v~~~~~~~~~~s~l~~~~~-i~~~-~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~mK~   92 (168)
T PF01956_consen   17 IVVFLIAILRGLISELLQKFL-IDRK-MDKYQKRMKEFQKRY-RELRKNGDFKKPKKLEKRQMELMEKQQEM-MMMMMKP   92 (168)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cccc-cHHHHHHHHHHHHHH-HHHHHcCCccCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            455666666666666664222 2233 222222211111111 11133345566666666555555433333 5566666


Q ss_pred             HHHHHHHHHHHHHhhccccccccC-CcccccccccccCCCCCCCCCchhHHHHHHHHH
Q psy10293         90 GFAFTALLSMFNTIFDGKIVAKLP-FTPISWVQGLSHRNLSGEDYTDCSFIFLYILCT  146 (179)
Q Consensus        90 ~l~~i~if~l~~~~f~g~~VaklP-F~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcs  146 (179)
                      ++.+++.+..+..|....--+..- --|+++.+.+..=---|-+..|.++.+|-+.-.
T Consensus        93 ~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYf  150 (168)
T PF01956_consen   93 MFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYF  150 (168)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHH
Confidence            666666665666664443332211 124443344422222244555666666655443

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>PRK01318 membrane protein insertase; Provisional

Probab=94.83  E-value=1.3  Score=41.84  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHHHHhhc
Q psy10293         29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKSMFAIGFAFTALLSMFNTIFD  105 (179)
Q Consensus        29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~m~~~~l~~i~if~l~~~~f~  105 (179)
                      .+.+++++|-+|++.+||.|+       +   +   +|.+++++++-++-...   -+-|+++-+.+++++|.++....+
T Consensus       348 s~~km~~lqP~~~~i~~kyk~-------d---~---~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e  414 (521)
T PRK01318        348 SMAKMKVLQPKMQELKEKYKD-------D---P---QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE  414 (521)
T ss_pred             HHHHHHHhhHHHHHHHHHhHh-------h---H---HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666555555433       1   1   23344445444443322   244555555556555555444332


Q ss_pred             cccccccCCcccc-cccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCC
Q psy10293        106 GKIVAKLPFTPIS-WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAP  161 (179)
Q Consensus       106 g~~VaklPF~pi~-~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~  161 (179)
                            +.-.|+. |++.++.     +|++..= -+..+-.-+++.+.++.-++-.+
T Consensus       415 ------l~~~~fl~Wi~DLs~-----~Dp~~il-~~~~lPil~~~~~~~~~~l~~~~  459 (521)
T PRK01318        415 ------LRHAPFIGWIHDLSA-----PDPYFIL-HIGLLPILMGITMFLQQKLNPTP  459 (521)
T ss_pred             ------hccCchheeeccccc-----cccchhH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence                  2223443 6665543     4543211 11222233666777777777443

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=94.73  E-value=0.8  Score=36.98  Aligned_cols=43  Identities=26%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293          7 LIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKE   49 (179)
Q Consensus         7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~   49 (179)
                      .|++++++.=++.-=++..=.-+..+++++|-|+++.+||.|+
T Consensus         5 sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~   47 (181)
T TIGR03592         5 AIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKD   47 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3444444444443334444444555666666666666665553

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK01622 OxaA-like protein precursor; Validated

Probab=94.39  E-value=0.35  Score=41.44  Aligned_cols=60  Identities=17%  Similarity=0.068  Sum_probs=29.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293         30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALL   97 (179)
Q Consensus        30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if   97 (179)
                      +++++++|-|+++.+||.|++.        +.++-++.++++.++.+|-+..-++....-+++.+|+|
T Consensus        90 ~~km~~iqP~l~~iq~kyk~~~--------d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif  149 (256)
T PRK01622         90 QEKMAVMKPELDKIQAKLKVTK--------DLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPIL  149 (256)
T ss_pred             HHHHHHhCHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHH
Confidence            3455556666666666654422        22233345556666666655433442333344444444

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=94.20  E-value=2.9  Score=35.05  Aligned_cols=36  Identities=14%  Similarity=0.115  Sum_probs=16.2

Q ss_pred             HHHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q psy10293         66 REEERLKNNNKDLTMVK---MKSMFAIGFAFTALLSMFN  101 (179)
Q Consensus        66 r~e~~l~~~~~~l~~~k---~k~m~~~~l~~i~if~l~~  101 (179)
                      |.++++.++.++-...-   +-|+++-..+++.+|+.++
T Consensus        80 ~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~  118 (223)
T PRK00145         80 KLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFN  118 (223)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555544222   3344444444444444443

>PRK02944 OxaA-like protein precursor; Validated

Probab=94.12  E-value=0.65  Score=39.80  Aligned_cols=62  Identities=13%  Similarity=0.091  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q psy10293         31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK---MKSMFAIGFAFTALLSMFN  101 (179)
Q Consensus        31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k---~k~m~~~~l~~i~if~l~~  101 (179)
                      .+++++|-|+++.+||.++         ++.+.-+|.++++.++-++-...-   +-|+++-+.+++++|..++
T Consensus        86 ~km~~iqPe~~~iq~kyk~---------~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~  150 (255)
T PRK02944         86 KAMQALQPEMQKLKEKYSS---------KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIM  150 (255)
T ss_pred             HHHHHccHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555554444322         122334555666666666655322   4455555555555554443

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=93.52  E-value=0.64  Score=42.04  Aligned_cols=66  Identities=11%  Similarity=0.120  Sum_probs=33.3

Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH--HHhhhHHHHHHHHHHHHHH
Q psy10293         24 WLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT--MVKMKSMFAIGFAFTALLS   98 (179)
Q Consensus        24 ~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~--~~k~k~m~~~~l~~i~if~   98 (179)
                      +.=.-.+.+++.+|-+|++.+++.++...      +++   ++.++++.++-+|-.  +.-.-|+++-+.+++++|.
T Consensus        47 ikQ~KS~~KM~~LQPemqkk~~eIqeKYK------dDp---qk~QqEmmkLYKE~GNPlaGCLP~LIQmPIF~aLY~  114 (375)
T PRK02654         47 AGSIRNMRRMKIAQPVMQKRQAEIQERYK------NDP---QKQQEEMGKLMKEFGNPLAGCLPLLVQMPILFALFA  114 (375)
T ss_pred             HHHHHHHHHHHHhCchhhhHHHHHHHHhc------CCH---HHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHH
Confidence            33333455666666777776777776431      111   233444555555554  1124455555555555554

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=93.29  E-value=2.6  Score=34.03  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccc
Q psy10293         85 SMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLS  124 (179)
Q Consensus        85 ~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~  124 (179)
                      |.++-+.+++.+|..+.+.-.   +..+.-..+.++..++
T Consensus        74 ~~liq~Pif~~~~~~lr~~~~---~~~~~~~g~lw~~dL~  110 (198)
T PF02096_consen   74 PPLIQIPIFIGLFRALRRMAE---VPSLATGGFLWFPDLT  110 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hcccccCceeChHhcC
Confidence            444444444444444444322   2222334555555543

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=91.25  E-value=11  Score=33.82  Aligned_cols=37  Identities=14%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             HHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHHH
Q psy10293         66 REEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFNT  102 (179)
Q Consensus        66 r~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~~  102 (179)
                      +.+++++++.++-..   ..+-|+++-+.+++.+|..+++
T Consensus        91 ~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~  130 (329)
T PRK01315         91 RMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDS  130 (329)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555442   2256777777777777776665

>PRK02463 OxaA-like protein precursor; Provisional

Probab=91.09  E-value=1.4  Score=38.99  Aligned_cols=62  Identities=21%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhh-----hHHHHHHHHHHHHHHH
Q psy10293         30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKM-----KSMFAIGFAFTALLSM   99 (179)
Q Consensus        30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~-----k~m~~~~l~~i~if~l   99 (179)
                      +++++++|-|+++.+||.|++.     +  ++++ ++.++++.++.+|-....+     -|+++-+.+++++|..
T Consensus        90 ~~KM~~lqPe~~~Iq~Kyk~~~-----~--~~~~-~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~a  156 (307)
T PRK02463         90 SEKMAYLKPVFEPINERLKNAT-----T--QEEK-MAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFA  156 (307)
T ss_pred             HHHHHHhChhHHHHHHHHhcCC-----C--hHHH-HHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHH
Confidence            5788888888888888877633     1  1222 2344556555555443323     3445555555555543

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=90.66  E-value=9.2  Score=35.47  Aligned_cols=65  Identities=14%  Similarity=0.134  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHHHHh
Q psy10293         31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKSMFAIGFAFTALLSMFNTI  103 (179)
Q Consensus        31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~m~~~~l~~i~if~l~~~~  103 (179)
                      .+++.+|-++++.+++.|++.     +   .+..++.+++++++.++-+..   .+-|+++-+.+++++|..+.+.
T Consensus        59 ~km~~lqPel~~iq~kyk~~~-----d---~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~m  126 (429)
T PRK00247         59 RTAAHIRPKRKALREEYKGKT-----D---EASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRM  126 (429)
T ss_pred             HHHHHcCHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355566666666666665422     1   122233344556565555522   2556666666666666555553

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=90.25  E-value=2.8  Score=36.94  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhH
Q psy10293          9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKS   85 (179)
Q Consensus         9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~   85 (179)
                      +++-++.=++.--++..-...+++++++|-++++.+||.|. .     |      .++.++|++++-++-...   ..-|
T Consensus       115 i~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~-~-----~------~~~~q~e~~~Lyk~~~vnPl~gclP  182 (314)
T COG0706         115 ILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKG-T-----D------KQKQQQEMMKLYKKHKVNPLAGCLP  182 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCC-C-----C------HHHHHHHHHHHHHHhCCCchhhHHH
Confidence            33333333333346666665678888888888888887774 0     1      123334666666665532   2457


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy10293         86 MFAIGFAFTALLSMFNTI  103 (179)
Q Consensus        86 m~~~~l~~i~if~l~~~~  103 (179)
                      +++.+.+++.+++.+.+.
T Consensus       183 ~liQ~Pifialy~~l~~~  200 (314)
T COG0706         183 LLIQMPIFIALYYVLRST  200 (314)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            777777777776555443

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=90.05  E-value=5.2  Score=28.30  Aligned_cols=21  Identities=14%  Similarity=0.381  Sum_probs=14.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHH
Q psy10293         30 TEKYQKLKTEIEKQMEKKKEA   50 (179)
Q Consensus        30 ~e~~~~l~~e~~~~~ek~k~~   50 (179)
                      .+++.++++++++..+.+.+.
T Consensus         2 ~dkl~~i~~~v~~v~~im~~N   22 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMREN   22 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            367778888887776555553

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=89.99  E-value=4.8  Score=35.58  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=22.2

Q ss_pred             HHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHHHh
Q psy10293         66 REEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFNTI  103 (179)
Q Consensus        66 r~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~~~  103 (179)
                      +.++++.++.+|-+.   ..+-|+++-+.+++++|..+.+.
T Consensus        81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~  121 (304)
T PRK03449         81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSF  121 (304)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555555542   22566667777777777666553

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=87.73  E-value=8.8  Score=30.90  Aligned_cols=30  Identities=3%  Similarity=-0.016  Sum_probs=15.6

Q ss_pred             HHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293         67 EEERLKNNNKDLTMVKMKSMFAIGFAFTALL   97 (179)
Q Consensus        67 ~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if   97 (179)
                      .+++++++-+|-....+ +.+...++.+|+|
T Consensus        53 ~~~~~~~l~k~~~~~p~-~~~~~~liq~Pif   82 (198)
T PF02096_consen   53 MQQEMQKLYKKHGVNPL-KGCLPPLIQIPIF   82 (198)
T ss_pred             HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHH
Confidence            33344444444432223 4455667777777

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=87.52  E-value=8.3  Score=31.14  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHH
Q psy10293         59 NVKKKIEREEERLKNNNKDLTM   80 (179)
Q Consensus        59 ~~~kkler~e~~l~~~~~~l~~   80 (179)
                      +.++++++++++++...+|+-.
T Consensus       158 ~~~~ei~~lk~el~~~~~~~~~  179 (192)
T PF05529_consen  158 KLSEEIEKLKKELEKKEKEIEA  179 (192)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666665555553

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=86.73  E-value=7.3  Score=38.67  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHH
Q psy10293         31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFN  101 (179)
Q Consensus        31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~  101 (179)
                      .+|+++|-+|++.+||-|+             .-+|.|++++++-++-..   .-.-|+++-+.+++++|..+.
T Consensus       603 aKMq~LQPemqeIQeKYKd-------------D~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~  663 (795)
T PRK01001        603 RRMQKLSPYIQEIQQKYKK-------------EPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLK  663 (795)
T ss_pred             HHHHHhhHHHHHHHHHhHh-------------HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555544433             113345556655555442   224465666666666665444

>KOG4253|consensus

Probab=86.15  E-value=7.7  Score=31.53  Aligned_cols=16  Identities=13%  Similarity=-0.027  Sum_probs=11.6

Q ss_pred             hhHHHHHHHHHhhhHH
Q psy10293        136 CSFIFLYILCTMSIRQ  151 (179)
Q Consensus       136 ~s~i~wYfLcsm~~r~  151 (179)
                      +|-..|-+.|.=.++.
T Consensus       154 VsltiW~~a~~kvi~g  169 (175)
T KOG4253|consen  154 VSLTIWVWALMKVING  169 (175)
T ss_pred             cchhhhHHHHHHHHhh
Confidence            6888888888765544

>PRK11546 zraP zinc resistance protein; Provisional

Probab=85.38  E-value=14  Score=29.34  Aligned_cols=76  Identities=11%  Similarity=0.067  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHH-------HHHHHHHHHHHh----hhhhhchhH
Q psy10293          6 LLIVFISVCTALLSEGLTWLL--------------VYRTEKYQKLKTE-------IEKQMEKKKEAI----ESTLLDKNV   60 (179)
Q Consensus         6 l~I~~~a~~t~l~se~ls~~L--------------vyr~e~~~~l~~e-------~~~~~ek~k~~~----~~~~~~k~~   60 (179)
                      ++++.+|+++.+-+-.+.|.-              + ..|+..++++=       +.++.+++.+..    .-..+++.|
T Consensus         9 ~~~~ala~~~~~s~~a~A~~~~G~~~G~~~~~~~~L-T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD   87 (143)
T PRK11546          9 LVLMALSALAMGSGSAFAHHHWGGGHGMWQQNAAPL-TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD   87 (143)
T ss_pred             HHHHHHHHHHHhhhHHHHhhccCCCCCCCccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            556677777777777776641              2 56666555432       222222222111    011135578


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHh
Q psy10293         61 KKKIEREEERLKNNNKDLTMVK   82 (179)
Q Consensus        61 ~kkler~e~~l~~~~~~l~~~k   82 (179)
                      .+|+.++..|+.+++.+|.--+
T Consensus        88 ~~kI~aL~kEI~~Lr~kL~e~r  109 (143)
T PRK11546         88 SSKINAVAKEMENLRQSLDELR  109 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999888544

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=85.00  E-value=1  Score=32.48  Aligned_cols=46  Identities=24%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy10293          8 IVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIES   53 (179)
Q Consensus         8 I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~   53 (179)
                      +.++|++++++...+-|.+||+.=+=.+-|.++++..+|..+...+
T Consensus         7 ~~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIreraED   52 (81)
T PF00558_consen    7 LAIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRERAED   52 (81)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH------------CHHHHHHHHCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccccc
Confidence            3445666677778889999988644445567888888888775533

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=84.74  E-value=7.2  Score=29.08  Aligned_cols=29  Identities=14%  Similarity=0.334  Sum_probs=17.7

Q ss_pred             HHHHHHhhccH---HHHHHHHHHHHHHHHHHH
Q psy10293         21 GLTWLLVYRTE---KYQKLKTEIEKQMEKKKE   49 (179)
Q Consensus        21 ~ls~~Lvyr~e---~~~~l~~e~~~~~ek~k~   49 (179)
                      .++|.+++-..   .|.+++++++.+.++.++
T Consensus        14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~   45 (105)
T PRK00888         14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAK   45 (105)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            55666665444   677777777766444443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=82.21  E-value=18  Score=26.85  Aligned_cols=64  Identities=11%  Similarity=0.132  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293         14 CTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT   79 (179)
Q Consensus        14 ~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~   79 (179)
                      +.+++--.++.-++ .++.+.++.+++++.-+|..+-.++ ...-...+.+.+++.++.+++-++.
T Consensus        19 ~~~~~~~~l~~~~a-~~~~~~~l~~~~~~~~~Rl~~lE~~-l~~LPt~~dv~~L~l~l~el~G~~~   82 (106)
T PF10805_consen   19 AGGIFWLWLRRTYA-KREDIEKLEERLDEHDRRLQALETK-LEHLPTRDDVHDLQLELAELRGELK   82 (106)
T ss_pred             HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHhHHH
Confidence            34444444555556 6778888877777664444332211 0011233344444444554444444

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF14282 FlxA: FlxA-like protein

Probab=82.13  E-value=6.9  Score=29.12  Aligned_cols=52  Identities=13%  Similarity=0.270  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293         31 EKYQKLKTEIEKQMEKKKEAIE-STLLDKNVKKKIEREEERLKNNNKDLTMVK   82 (179)
Q Consensus        31 e~~~~l~~e~~~~~ek~k~~~~-~~~~~k~~~kkler~e~~l~~~~~~l~~~k   82 (179)
                      +..++|+..++++.+++++-.. ++.+++.+.++.+.++.++..+..+|....
T Consensus        19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq   71 (106)
T PF14282_consen   19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ   71 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888777776543 222344567788888899999999888543

>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli

Probab=82.01  E-value=4.6  Score=30.79  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=15.4

Q ss_pred             hhHHHHHHHHHHHHHHhhHHH
Q psy10293         58 KNVKKKIEREEERLKNNNKDL   78 (179)
Q Consensus        58 k~~~kkler~e~~l~~~~~~l   78 (179)
                      +|+.+|+.+.|.+|.+.+.+|
T Consensus        92 ~G~~~KI~K~~~KL~ea~~eL  112 (115)
T PF06476_consen   92 KGDSDKIAKRQKKLAEAKAEL  112 (115)
T ss_pred             hCCHHHHHHHHHHHHHHHHHH
Confidence            366678888777787777776

>PRK06342 transcription elongation factor regulatory protein; Validated

Probab=81.56  E-value=5  Score=32.21  Aligned_cols=51  Identities=10%  Similarity=0.138  Sum_probs=34.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHh--hhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293         29 RTEKYQKLKTEIEKQMEKKKEAI--ESTLLDKNVKKKIEREEERLKNNNKDLTMVK   82 (179)
Q Consensus        29 r~e~~~~l~~e~~~~~ek~k~~~--~~~~~~k~~~kkler~e~~l~~~~~~l~~~k   82 (179)
                      -.+.|++|++|++.+.++.++|.  |+- +|  ++++...+|.++..+.+.|...+
T Consensus        32 T~~G~~~L~~El~~L~~~i~~Ar~~GDl-sE--ak~~~~~~e~rI~~L~~~L~~A~   84 (160)
T PRK06342         32 TEAGLKALEDQLAQARAAYEAAQAIEDV-NE--RRRQMARPLRDLRYLAARRRTAQ   84 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCh-hH--HHHHHHHHHHHHHHHHHHHccCE
Confidence            57899999999999988887774  332 23  33344445557777776666433

>PRK04654 sec-independent translocase; Provisional

Probab=81.16  E-value=22  Score=30.06  Aligned_cols=71  Identities=18%  Similarity=0.397  Sum_probs=39.3

Q ss_pred             cchHHHHHHHHHHH-------HHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHhhhhhhchhHHHHHHHHHHHHH
Q psy10293          2 WADTLLIVFISVCT-------ALLSEGLTWLLVYRTEKYQKLKTEIEKQ--MEKKKEAIESTLLDKNVKKKIEREEERLK   72 (179)
Q Consensus         2 ~~d~l~I~~~a~~t-------~l~se~ls~~Lvyr~e~~~~l~~e~~~~--~ek~k~~~~~~~~~k~~~kkler~e~~l~   72 (179)
                      +.++++|++++++.       .+.-++-.|+--.|+ .++..++++++.  .+++++..     + +-+..++..+.+++
T Consensus         6 ~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~-~~~~vk~El~~El~~~ELrk~l-----~-~~~~~i~~~~~~lk   78 (214)
T PRK04654          6 VGELTLIAVVALVVLGPERLPKAARFAGLWVRRARM-QWDSVKQELERELEAEELKRSL-----Q-DVQASLREAEDQLR   78 (214)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH-----H-HHHHHHHHHHHHHH
Confidence            34778888888765       345555555554443 456666666555  33333322     1 12334666666666


Q ss_pred             HhhHHHH
Q psy10293         73 NNNKDLT   79 (179)
Q Consensus        73 ~~~~~l~   79 (179)
                      +..+++-
T Consensus        79 ~~~~el~   85 (214)
T PRK04654         79 NTQQQVE   85 (214)
T ss_pred             HHHHHHH
Confidence            6666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	88.17

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=88.17  E-value=5.1  Score=28.02  Aligned_cols=21  Identities=5%  Similarity=0.270  Sum_probs=14.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHH
Q psy10293         29 RTEKYQKLKTEIEKQMEKKKE   49 (179)
Q Consensus        29 r~e~~~~l~~e~~~~~ek~k~   49 (179)
                      ..++..++|+++++..+-+.+
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~   23 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRV   23 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            467788888888777444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00