Psyllid ID: psy10331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHcccccccccccHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHcHHHEEEEEEEHcccHHHHHHHHHHHHcccHHHHccccccEEEEEcccc
Coil and Loop (DISEMBL)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMislypllfcppftsdedqDLEIQERIRQLKWVNakhldcgieetnaTVRDLVYNSMTKLlemdsvrapqdKLACVVACCRDIFLLLqssvgpasadeFLPALIFLVLKMNPARLKSNIHFVTRFCNanrlmsgeagYFFTNLVSI
Flexible Loop (DISEMBL)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHldcgieetnatvrDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSgeagyfftnlvsi
Low Complexity Region (SEG)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Disordered region (IsUnstruct)
******TFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLV**
Disordered Region (DISOPRED)
MQNFYQTFAKRMENHK******AQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Disordered Region (DISEMBL)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Disordered Region (DISPRO)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
O18973	492	Rab5 GDP/GTP exchange fac	yes	N/A	0.961	0.357	0.488	1e-45
Q9JM13	491	Rab5 GDP/GTP exchange fac	yes	N/A	0.961	0.358	0.483	2e-45
Q9UJ41	708	Rab5 GDP/GTP exchange fac	no	N/A	0.841	0.217	0.516	1e-42
O74396	572	Vacuolar protein sorting-	no	N/A	0.967	0.309	0.281	3e-18
Q9LT31	520	Vacuolar protein sorting-	no	N/A	0.950	0.334	0.293	2e-16
A2RV61	1452	GTPase-activating protein	N/A	N/A	0.945	0.119	0.270	1e-10
Q9GYH7	1093	Receptor-mediated endocyt	no	N/A	0.409	0.068	0.435	2e-10
P54787	451	Vacuolar protein sorting-	yes	N/A	0.803	0.325	0.279	2e-10
A8WVM4	1104	Receptor-mediated endocyt	N/A	N/A	0.803	0.133	0.305	3e-10
Q14C86	1478	GTPase-activating protein	no	N/A	0.934	0.115	0.262	1e-08

>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q+FYQ  A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct: 184 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 240

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct: 241 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 300

Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
             ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 301 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 360

Rab effector protein acting as linker between gamma-adaptin and RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.
Bos taurus (taxid: 9913)

>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q+FYQ  A+RM+       V  +  E ++D +EK+ M  LY  +FCP  T DE +DL IQ
Sbjct: 183 QDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQ 239

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct: 240 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIF 299

Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
             ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 300 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 359

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A (By similarity). Can act as a ubiquitin ligase.

Mus musculus (taxid: 10090)

>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 109/155 (70%), Gaps = 1/155 (0%)

Query: 27  ELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATV 86
           E ++D +EKY M  LY  +FCP  T DE +DL IQ+RIR L+WV  + L   + E    V
Sbjct: 422 EKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEV 481

Query: 87  RDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ-SSVGPASADEFLPALIFLVL 145
            D+V  ++T ++EMDS R P+DKLAC+  C + IF  ++ +   PASAD+FLP LI++VL
Sbjct: 482 SDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVL 541

Query: 146 KMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           K NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 542 KGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 576

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Homo sapiens (taxid: 9606)

>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps901 PE=1 SV=3

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 107/192 (55%), Gaps = 15/192 (7%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCP-------PFTSD 53
           +++F +   +++E ++ +A  S  + +   + +EK  +  LY  LF P       P +S+
Sbjct: 155 IRDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSE 214

Query: 54  EDQDLE----IQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDK 109
              D+E    + E++   +W+  ++LD   +++++    L  + + ++   +   AP+DK
Sbjct: 215 HSDDVEEDRVLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRI---NDYHAPRDK 271

Query: 110 LACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLM 169
           + C++ CC+ IF  L++ V   SAD F+P LIF+VL+  PA L SNI ++ RF +  +L 
Sbjct: 272 IICLLNCCKVIFSYLRNVVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKL- 330

Query: 170 SGEAGYFFTNLV 181
           +GE  Y+ + L+
Sbjct: 331 TGEVMYYLSTLM 342

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 105/191 (54%), Gaps = 17/191 (8%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
           +Q F+         H L++  S ++ +   D +EKY M  L+  +F     S+ ++ +  
Sbjct: 50  VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFA----SNTEEVIAD 105

Query: 61  QERIRQL----KWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVAC 116
           ++  +++    ++++ ++LD      N +   L    + K+   +  +AP+DKL C++ C
Sbjct: 106 EKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNC 162

Query: 117 CRDIF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSG 171
           C+ I  LLL +S+        ADEFLP LI++ +K NP +L SN+ ++ R+   ++L+ G
Sbjct: 163 CKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-G 221

Query: 172 EAGYFFTNLVS 182
           EA YFFTN++S
Sbjct: 222 EAAYFFTNILS 232

Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 1    MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
            ++ F Q+    M    ++ + S +  +     +E+  M  ++ L F P   +D  +D  +
Sbjct: 1259 VEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVL 1318

Query: 61   QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
             E I++L K V A H    I E    +R+  + S  T++  + + + P+DK+ C++  C 
Sbjct: 1319 HEHIKRLSKVVTANHRALQIPE--VYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCS 1376

Query: 119  DI--FLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYF 176
             I   L L +      AD+F+P L+F+++K NP  L S + +++ F  +NRL+ GE  Y+
Sbjct: 1377 TIMNLLSLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSFY-SNRLI-GEESYW 1434

Query: 177  F 177
            +
Sbjct: 1435 W 1435

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking.

Xenopus laevis (taxid: 8355)

>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans GN=rme-6 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 107  QDKLACVVACCRDI--FLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCN 164
            QDKL CVV CC  I   + L S    ASAD+  P L+F+++K NP  L SN+ FV  F  
Sbjct: 1008 QDKLNCVVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFA- 1066

Query: 165  ANRLMSGEAGYFFTNLVS 182
             +R+ SG   Y++ N  S
Sbjct: 1067 GDRIESGRDAYYWVNFKS 1084

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis. Acts by regulating the activation of rab-5 by exchanging bound GDP for free GTP at clathrin coated pits.

Caenorhabditis elegans (taxid: 6239)

>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 14/161 (8%)

Query: 33  VEKYSMISLYPLLFCP--------PFTSDEDQDLE----IQERIRQLKWVNAKHLDCGIE 80
           +EK  M  LY   F P        P   +  +DL     + E+IR  ++++   LD    
Sbjct: 137 MEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYRFISPIMLDIPDT 196

Query: 81  ETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ-SSVGPASADEFLPA 139
             NA +   V+ +  +L +++  ++P+DK+ CV+   + IF LL+ + +    AD F+P 
Sbjct: 197 MPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQNGADSFIPV 256

Query: 140 LIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           LI+ +LK     L SN++++ RF + +  + GE  Y+ ++L
Sbjct: 257 LIYCILKGQVRYLVSNVNYIERFRSPD-FIRGEEEYYLSSL 296

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors. May bind a Rab GTPase such as VPS21.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 33   VEKYSMISLYPLLFCPPFTSDEDQDLEIQERI-RQLKWVNAKHLDCGIEETNATVRDLVY 91
            +E++ M ++Y + F P    D+ +D  +Q  I +    V   H    I E    + +  +
Sbjct: 945  MERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPE--HLLGEAPW 1002

Query: 92   NSMTKLLEM-DSVRAPQDKLACVVACCRDI--FLLLQSSVGPASADEFLPALIFLVLKMN 148
             S    L M D+    Q+KL C+V CC  I   + L S    ASAD+  P L+F+++K N
Sbjct: 1003 PSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIKAN 1062

Query: 149  PARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS 182
            P  L SN+ F+  F   +++ SG   Y++ N  S
Sbjct: 1063 PRSLLSNLQFIETFA-GDQIESGRDAYYWVNFKS 1095

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis. Acts by regulating the activation of rab-5 by exchanging bound GDP for free GTP at clathrin coated pits.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 1    MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
            +++F Q     M    ++ + S +  +     +E+  M  ++ L F P    D  +D  +
Sbjct: 1285 VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVL 1344

Query: 61   QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
             E I++L K V A H    I E    +R+  + S  +++  + + + P+DK+ C++  C 
Sbjct: 1345 HEHIQRLSKVVTANHRALQIPEV--YLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCS 1402

Query: 119  DIFLLL----QSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
             I  LL    + SV    AD+F+P L+F+++K NP  L S + +++ F  +   +SGE  
Sbjct: 1403 TIMNLLSLANEDSV--PGADDFVPVLVFVLIKANPPCLLSTVQYISSFYAS--CLSGEES 1458

Query: 175  YFF 177
            Y++
Sbjct: 1459 YWW 1461

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
383858114	601	PREDICTED: rab5 GDP/GTP exchange factor-	0.978	0.297	0.688	3e-71
328790623	601	PREDICTED: rab5 GDP/GTP exchange factor-	0.978	0.297	0.688	4e-71
322795845	641	hypothetical protein SINV_15528 [Solenop	0.978	0.279	0.694	5e-71
307190799	617	Rab5 GDP/GTP exchange factor [Camponotus	0.978	0.290	0.694	6e-71
380018889	601	PREDICTED: rab5 GDP/GTP exchange factor-	0.978	0.297	0.688	7e-71
307207448	619	Rab5 GDP/GTP exchange factor [Harpegnath	0.978	0.289	0.688	1e-70
332026998	630	Rab5 GDP/GTP exchange factor [Acromyrmex	0.978	0.284	0.688	2e-70
350422989	599	PREDICTED: rab5 GDP/GTP exchange factor-	0.978	0.298	0.683	5e-70
340727365	599	PREDICTED: rab5 GDP/GTP exchange factor-	0.978	0.298	0.683	6e-70
242005264	630	Rab5 GDP/GTP exchange factor, putative [	0.983	0.285	0.640	1e-65

>gi|383858114|ref|XP_003704547.1| PREDICTED: rab5 GDP/GTP exchange factor-like [Megachile rotundata]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFYQ FAKR+EN   YAD++ + +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 167 QNFYQVFAKRLENSAKYADIAPEIKEKLLDYVERYAMTLLYRILFCPPFTNDEEKDLAIQ 226

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDSV+APQ+KL+C++ CCR+IF
Sbjct: 227 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSVKAPQEKLSCIIYCCRNIF 286

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           L+LQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 287 LMLQQSVGGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 346

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790623|ref|XP_396181.4| PREDICTED: rab5 GDP/GTP exchange factor-like isoform 1 [Apis mellifera]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFYQ FAKR+EN   YAD++++ +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 166 QNFYQVFAKRLENSVKYADITSEVKEKLLDYVERYTMTLLYRILFCPPFTNDEEKDLAIQ 225

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KL+CV+ CCR+IF
Sbjct: 226 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLSCVIYCCRNIF 285

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           L+LQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 286 LMLQQSVGGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 345

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795845|gb|EFZ18524.1| hypothetical protein SINV_15528 [Solenopsis invicta]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 153/180 (85%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFY  F KR+EN   YAD+S+  +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 189 QNFYHVFGKRLENSTKYADISSDIKEKLLDYVERYAMTLLYRILFCPPFTTDEEKDLAIQ 248

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KLACV+ CCR+IF
Sbjct: 249 KRIRQLNWVSGKNLECRIHETSSDVRELVYTSITDLLNMDSAKAPQEKLACVIHCCRNIF 308

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           LLLQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 309 LLLQQSVDGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 368

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190799|gb|EFN74668.1| Rab5 GDP/GTP exchange factor [Camponotus floridanus]

 Score =  271 bits (694), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFY  F KR+EN   YAD+ +  +E LLDYVE+Y+M  LY +LFCPPFTSDE++DL IQ
Sbjct: 166 QNFYHVFGKRLENSTKYADIPSDIKEKLLDYVERYAMTLLYRILFCPPFTSDEEKDLAIQ 225

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KLACV+ CCR+IF
Sbjct: 226 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLACVIHCCRNIF 285

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           LLLQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 286 LLLQQSVDGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 345

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018889|ref|XP_003693351.1| PREDICTED: rab5 GDP/GTP exchange factor-like [Apis florea]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 155/180 (86%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFYQ FAKR+EN   YAD++ + +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 166 QNFYQVFAKRLENSVKYADITPEIKEKLLDYVERYTMTLLYRILFCPPFTNDEEKDLAIQ 225

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KL+CV+ CCR+IF
Sbjct: 226 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLSCVIYCCRNIF 285

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           L+LQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 286 LMLQQSVGGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 345

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207448|gb|EFN85163.1| Rab5 GDP/GTP exchange factor [Harpegnathos saltator]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFY  F KR+EN   YAD+  + +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 167 QNFYHVFGKRLENSAKYADIPPEIKEKLLDYVERYAMTLLYRILFCPPFTTDEEKDLAIQ 226

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KLACV+ CCR+IF
Sbjct: 227 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLACVIHCCRNIF 286

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           LLLQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 287 LLLQQSVDGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 346

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026998|gb|EGI67094.1| Rab5 GDP/GTP exchange factor [Acromyrmex echinatior]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           QNFY  F KR+EN   Y+D+S   +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 168 QNFYHVFGKRLENSTKYSDISPDIKEKLLDYVERYAMTLLYRILFCPPFTTDEEKDLAIQ 227

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KLACV+ CCR+IF
Sbjct: 228 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLACVIHCCRNIF 287

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           LLLQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 288 LLLQQSVDGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 347

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422989|ref|XP_003493351.1| PREDICTED: rab5 GDP/GTP exchange factor-like [Bombus impatiens]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 154/180 (85%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q FYQ FAKR+EN   YAD+S + +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 164 QTFYQVFAKRLENSVKYADISPEVKEKLLDYVERYAMTLLYRILFCPPFTNDEEKDLAIQ 223

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KL+CV+ CCR+IF
Sbjct: 224 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLSCVIYCCRNIF 283

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           ++LQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 284 VMLQQSVGGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 343

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727365|ref|XP_003402015.1| PREDICTED: rab5 GDP/GTP exchange factor-like [Bombus terrestris]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 154/180 (85%), Gaps = 1/180 (0%)

Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q FYQ FAKR+EN   YAD+S + +E LLDYVE+Y+M  LY +LFCPPFT+DE++DL IQ
Sbjct: 164 QTFYQVFAKRLENSVKYADISPEVKEKLLDYVERYAMTLLYRILFCPPFTNDEEKDLAIQ 223

Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIRQL WV+ K+L+C I ET++ VR+LVY S+T LL MDS +APQ+KL+CV+ CCR+IF
Sbjct: 224 KRIRQLNWVSGKNLECRIHETSSEVRELVYTSITDLLNMDSAKAPQEKLSCVIYCCRNIF 283

Query: 122 LLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
           ++LQ SV GPASADEFLPALIF+VLK NPARLKSNI+F+TRFCNA+RLM+GE GY+FTNL
Sbjct: 284 VMLQQSVGGPASADEFLPALIFIVLKANPARLKSNINFITRFCNASRLMTGEGGYYFTNL 343

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005264|ref|XP_002423490.1| Rab5 GDP/GTP exchange factor, putative [Pediculus humanus corporis] gi|212506594|gb|EEB10752.1| Rab5 GDP/GTP exchange factor, putative [Pediculus humanus corporis]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/181 (64%), Positives = 144/181 (79%), Gaps = 1/181 (0%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
           +QN Y+ FAKRME   +YA+ +  ++E+LLDY EKY    LY LLF  P T+D+++DL +
Sbjct: 162 IQNSYKIFAKRMEGTLIYAETNQHEKEVLLDYFEKYLTTCLYDLLFSSPATNDDEKDLAV 221

Query: 61  QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
           Q RIRQL WV  KHLDC I+ETNA VRDLVYN++  LL +DS +APQDKL CVV CCR I
Sbjct: 222 QNRIRQLSWVGTKHLDCAIDETNAEVRDLVYNAIMDLLGLDSAKAPQDKLGCVVKCCRSI 281

Query: 121 FLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTN 179
           F+LLQ SV GPASADEFLPALIF+VLK NPAR KSN++++T+FCN +RLM+GE GY+FTN
Sbjct: 282 FILLQQSVGGPASADEFLPALIFIVLKANPARFKSNVNYITKFCNESRLMAGEGGYYFTN 341

Query: 180 L 180
           L
Sbjct: 342 L 342

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0262937	696	Rabex-5 "Rabaptin-5-associated	0.994	0.261	0.540	7.4e-50
UNIPROTKB|F1RJI2	492	LOC100516668 "Uncharacterized	0.961	0.357	0.494	2.5e-42
UNIPROTKB|F6Y7P9	492	RABGEF1 "Uncharacterized prote	0.961	0.357	0.488	5.2e-42
UNIPROTKB|O18973	492	RABGEF1 "Rab5 GDP/GTP exchange	0.961	0.357	0.488	8.4e-42
UNIPROTKB|Q2TBX8	491	RABGEF1 "RABGEF1 protein" [Bos	0.961	0.358	0.488	8.4e-42
UNIPROTKB|B4DZM7	505	RABGEF1 "Rab5 GDP/GTP exchange	0.961	0.348	0.483	1.4e-41
UNIPROTKB|E7ERJ8	531	KCTD7 "BTB/POZ domain-containi	0.961	0.331	0.483	1.4e-41
UNIPROTKB|E9PFK9	504	RABGEF1 "Rab5 GDP/GTP exchange	0.961	0.349	0.483	1.4e-41
UNIPROTKB|E2R706	700	RABGEF1 "Uncharacterized prote	0.961	0.251	0.488	1.5e-41
MGI|MGI:1929459	491	Rabgef1 "RAB guanine nucleotid	0.961	0.358	0.483	1.7e-41

FB|FBgn0262937 Rabex-5 "Rabaptin-5-associated exchange factor for Rab5 ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/183 (54%), Positives = 133/183 (72%)

Query:     1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
             +QN Y   +  + N   +   + +DR+  +D+ EK  M   +  LF P FT+DED D+++
Sbjct:   182 VQNAYTKVSDIVHNDPSFEIATNEDRDSAIDFFEKVVMTQNHKFLFSPYFTTDEDSDVKV 241

Query:    61 QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
             Q+RIRQL W+ AKHLDC I+E N+  RDLVYN++++L+ +DS  +PQ+KL C   CCR I
Sbjct:   242 QKRIRQLSWITAKHLDCSIDEVNSEARDLVYNAISELVGIDSYYSPQEKLQCTWRCCRHI 301

Query:   121 FLLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTN 179
             F LL+ + G PASAD+FLPALIF+VLK NP RL SNI+FVTRF NA+RLMSGE+GY+FTN
Sbjct:   302 FELLKRATGGPASADDFLPALIFVVLKANPVRLHSNINFVTRFTNASRLMSGESGYYFTN 361

Query:   180 LVS 182
             L S
Sbjct:   362 LCS 364

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0035214 "eye-antennal disc development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0005622 "intracellular" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IDA

UNIPROTKB|F1RJI2 LOC100516668 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 89/180 (49%), Positives = 121/180 (67%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQT A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   184 QDFYQTVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 240

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   241 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 300

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   301 NAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 360

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F6Y7P9 RABGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 88/180 (48%), Positives = 121/180 (67%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQ  A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   184 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 240

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E  + V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   241 KRIRALHWVTPQMLCVPVNEEISEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 300

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   301 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 360

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O18973 RABGEF1 "Rab5 GDP/GTP exchange factor" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 88/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQ  A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   184 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 240

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   241 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 300

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   301 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 360

GO:0005515 "protein binding" evidence=IPI

GO:0055037 "recycling endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q2TBX8 RABGEF1 "RABGEF1 protein" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 88/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQ  A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   183 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 239

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   240 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 299

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   300 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 359

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|B4DZM7 RABGEF1 "Rab5 GDP/GTP exchange factor" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   197 QDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 253

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   254 KRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 313

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   314 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 373

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7ERJ8 KCTD7 "BTB/POZ domain-containing protein KCTD7" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   223 QDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 279

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   280 KRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 339

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   340 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 399

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PFK9 RABGEF1 "Rab5 GDP/GTP exchange factor" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   196 QDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 252

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   253 KRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 312

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   313 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 372

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R706 RABGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 1.5e-41, P = 1.5e-41
 Identities = 88/180 (48%), Positives = 121/180 (67%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQ  A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct:   392 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 448

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E  + V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   449 KRIRALHWVTPQMLCVPVNEEISEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 508

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   509 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 568

GO:0051260 "protein homooligomerization" evidence=IEA

MGI|MGI:1929459 Rabgef1 "RAB guanine nucleotide exchange factor (GEF) 1" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 87/180 (48%), Positives = 120/180 (66%)

Query:     2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
             Q+FYQ  A+RM+       V  +  E ++D +EK+ M  LY  +FCP  T DE +DL IQ
Sbjct:   183 QDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQ 239

Query:    62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
             +RIR L WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct:   240 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIF 299

Query:   122 LLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
               ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct:   300 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 359

GO:0001933 "negative regulation of protein phosphorylation" evidence=IMP

GO:0002686 "negative regulation of leukocyte migration" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0031982 "vesicle" evidence=IDA

GO:0033004 "negative regulation of mast cell activation" evidence=IMP

GO:0043305 "negative regulation of mast cell degranulation" evidence=IMP

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IMP

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IDA;IMP

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IMP

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	6e-24
smart00167	117	smart00167, VPS9, Domain present in VPS9	8e-15

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score = 90.0 bits (224), Expect = 6e-24
 Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 96  KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPA--SADEFLPALIFLVLKMNPARLK 153
           +L +++  ++P++KL C++  C+ I   L  S       AD+ LP LI++++K NP  L 
Sbjct: 7   ELKKLNEAKSPREKLKCLLRTCKLITEALSKSNPGEPLGADDLLPILIYVLIKANPPNLY 66

Query: 154 SNIHFVTRFCNANRLMSGEAGYFFTNLVS 182
           SN+ F++ F +   L+SGE GY+ T L +
Sbjct: 67  SNLQFISLFRD-PDLLSGEEGYYLTTLEA 94

Length = 104

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score = 66.7 bits (163), Expect = 8e-15
 Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 100 MDSVRAPQDKLACVVACCRDIFLLLQSSVGP-ASADEFLPALIFLVLKMNPARLKSNIHF 158
           +   ++P DK+ C++  C+ I+ LL++  G  A AD+FLP LI++++K +P  L  N  +
Sbjct: 12  LQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEY 71

Query: 159 VTRFCNANRLMSGEAGYFFTNL 180
           +  F     L++GE GY+ T+L
Sbjct: 72  MEEFLE-PSLLTGEGGYYLTSL 92

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	100.0
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.95
KOG2320|consensus	651		99.71
KOG2319|consensus	477		99.44
KOG2319|consensus	477		99.26

>smart00167 VPS9 Domain present in VPS9

Probab=100.00  E-value=5.1e-35  Score=210.44  Aligned_cols=93  Identities=31%  Similarity=0.649  Sum_probs=87.9

Q ss_pred             HHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHHHHccccccc
Q psy10331         90 VYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRL  168 (183)
Q Consensus        90 ~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~l  168 (183)
                      |+.|+.+|++||.++||+|||.||++||+.|++.++.+. .++|||||||+||||||||+||+++||++||++|++++. 
T Consensus         2 ~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~~~~~-   80 (117)
T smart00167        2 VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFLEPSL-   80 (117)
T ss_pred             ccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHCCccc-
Confidence            678999999999999999999999999999999998655 679999999999999999999999999999999999985 


Q ss_pred             cCcchhhHHhhhcCC
Q psy10331        169 MSGEAGYFFTNLVSI  183 (183)
Q Consensus       169 ~~gE~~Y~lt~~~aA  183 (183)
                      +.||.|||||||+||
T Consensus        81 l~gE~gY~lT~l~aA   95 (117)
T smart00167       81 LTGEGGYYLTSLSAA   95 (117)
T ss_pred             cccHHHHHHHHHHHH
Confidence            589999999999997

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.95  E-value=4.3e-28  Score=171.24  Aligned_cols=93  Identities=34%  Similarity=0.674  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHh--ccCCCCChhhhHHHHHHHHHhcCccchhHHHHHHHHcccccc
Q psy10331         90 VYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ--SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANR  167 (183)
Q Consensus        90 ~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~--~~~~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~  167 (183)
                      |++|+++|++|+..+||.+|+.||.++++.|.+.+.  ....++||||+||+++|+|+||+|+++.|++.||++|+.++ 
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~~~-   79 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKTSKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFIDSS-   79 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHHHCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCC-
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcccc-
Confidence            678999999999999999999999999999999992  22378999999999999999999999999999999999776 


Q ss_pred             ccCcchhhHHhhhcCC
Q psy10331        168 LMSGEAGYFFTNLVSI  183 (183)
Q Consensus       168 l~~gE~~Y~lt~~~aA  183 (183)
                      .+.||.||++|||+||
T Consensus        80 ~~~~e~~y~ltt~~aA   95 (104)
T PF02204_consen   80 LLSGEEGYYLTTFEAA   95 (104)
T ss_dssp             TTSCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            4699999999999987

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG2320|consensus

Probab=99.71  E-value=6.5e-17  Score=140.42  Aligned_cols=176  Identities=19%  Similarity=0.282  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHhcCcccC------CCCHHHHHHHHH-HHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhh---CCC
Q psy10331          3 NFYQTFAKRMENHKLYA------DVSAQDRELLLD-YVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKW---VNA   72 (183)
Q Consensus         3 ~~~~~~~~~~~~~~~~~------~~~e~~~~~~~~-~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~---i~~   72 (183)
                      .|++.+++.|-++.--.      ..++.++|.+.+ ++.+.|...+-..+.... .....+|-.++..=..++.   -.+
T Consensus       310 q~lt~~k~yL~qs~e~~~~v~~~~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l-~~~h~~dGsl~~l~en~~vvr~~~~  388 (651)
T KOG2320|consen  310 QALTRRKNYLSQSPELDTPVQPSLLSETPLEAVLESALHKSVLKPLKPNLSAQL-PPVHSKDGSLQQLKENQDVVRAANP  388 (651)
T ss_pred             HHHHHhHHHHhhcCCCCCCccccccCcchHHHHHHHHHHHhhccccchhHhhhc-chhhhhccHHHHHhcccceecccCc
Confidence            35555566665542221      224455555443 355566655555555443 2345667777666555543   368


Q ss_pred             CCCcccccccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC--CCCChhhhHHHHHHHHHhcCcc
Q psy10331         73 KHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV--GPASADEFLPALIFLVLKMNPA  150 (183)
Q Consensus        73 ~~l~i~~~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~--~~~~ADdlLPiliyviika~~~  150 (183)
                      ..||+--....   ...+++....+..|.+.++|..|+..++++|+.|+..+...+  ...|||||+|+|.||+.|++.+
T Consensus       389 ~~lG~~~~~Ps---~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~ckLly~~~~~~~~g~~~gaDdflP~lsyvla~s~~~  465 (651)
T KOG2320|consen  389 TALGVFLSTPS---DVLMEQVKQKFTAMQRRYSPSKKLHALLKACKLLYAGMGGDNEGLAYGADDFLPVLSYVLARSDLQ  465 (651)
T ss_pred             cccceeccCCc---HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhcchh
Confidence            88887422222   235677788899999999999999999999999999988433  7899999999999999999999


Q ss_pred             chhHHHHHHHHccccccccCcchhhHHhhhcCC
Q psy10331        151 RLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI  183 (183)
Q Consensus       151 ~l~s~i~yI~~f~~~~~l~~gE~~Y~lt~~~aA  183 (183)
                      .+..+++||.+|..|+ +..||.|||+|++-+|
T Consensus       466 e~~~e~eYM~ELLdP~-l~~geggYYLTs~~~a  497 (651)
T KOG2320|consen  466 ELLTEAEYMMELLDPD-LLSGEGGYYLTSLYGA  497 (651)
T ss_pred             cchHHHHHHHHhcChh-hhcCccchhHHHHHHH
Confidence            9999999999999997 5699999999998765

>KOG2319|consensus

Probab=99.44  E-value=1.4e-12  Score=114.57  Aligned_cols=157  Identities=29%  Similarity=0.439  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhhCCCCCCcccccccchhHHHHHHHHHHHHhcCcCCC
Q psy10331         25 DRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVR  104 (183)
Q Consensus        25 ~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~~~~~~~~~~~~~ai~~L~~i~~~~  104 (183)
                      +.......++.....+++..+++.....+.+.|..++..++.++++++..++|+.....+.+......+.+.+..|+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  253 (477)
T KOG2319|consen  174 GENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELL  253 (477)
T ss_pred             HHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccccccccccchhHHHHHHHHHHHHHHHhh
Confidence            44556677888999999999999988888999999999999999999999999876655444556677889999999999


Q ss_pred             ChHH-HHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHHHHccccccccCcchhhHHhhhcC
Q psy10331        105 APQD-KLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS  182 (183)
Q Consensus       105 tP~~-KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~l~~gE~~Y~lt~~~a  182 (183)
                      +|++ |..|..+|++.|.+.+.... ...++|.|+|.++|.+++.+++++.++++|+.+|+.++++ .|+.+|+..++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~-~~~~~~~~~~~~~  332 (477)
T KOG2319|consen  254 TPRDKKEACALNCEKPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERL-SGEEKYYLFTYAC  332 (477)
T ss_pred             cchhhhHHHHHHHHHHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhh-hccchhhhhhhhh
Confidence            9999 79999999999999988776 7889999999999999999999999999999999999986 6888888777654

>KOG2319|consensus

Probab=99.26  E-value=8e-13  Score=116.01  Aligned_cols=177  Identities=27%  Similarity=0.410  Sum_probs=147.7

Q ss_pred             ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhh-hCCCCCCcccc
Q psy10331          1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLK-WVNAKHLDCGI   79 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~-~i~~~~l~i~~   79 (183)
                      |+++++....-...++-|+...+++.+......+.++++...+.++. ...+....|...+.+....+ ..+++..+...
T Consensus         7 ~~~~~~~~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~e   85 (477)
T KOG2319|consen    7 VQSTVAKYSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFA-SDVEEVDADVLNEIDDSSLQTIISPEASGDQE   85 (477)
T ss_pred             ccccccchhhhhccccccccchhhhhhhccccccchhcccccccCcc-hhhhhhhhHhhhccccchhhhhcCHhhccCcc
Confidence            46667777777788899999999999999999999999999999998 33444555666666655554 55777777765


Q ss_pred             cccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHH
Q psy10331         80 EETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHF  158 (183)
Q Consensus        80 ~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~y  158 (183)
                      ....   ...+..|+.++..++.+.+|.+|+.|++.+++.+......+. .+.-+|+++|.++|+..+++++++++++.|
T Consensus        86 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (477)
T KOG2319|consen   86 TFNQ---NTSIENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSIAPNQASQFLPVLIFVTKKANPQQFHSNVLY  162 (477)
T ss_pred             chhh---ccchhhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhcccccccccccceeeeccccCchhhhhhHHH
Confidence            5433   345778999999999999999999999999999998877554 444499999999999999999999999999


Q ss_pred             HHHccccccccCcchhhHHhhhcC
Q psy10331        159 VTRFCNANRLMSGEAGYFFTNLVS  182 (183)
Q Consensus       159 I~~f~~~~~l~~gE~~Y~lt~~~a  182 (183)
                      ..+++....++ |+.+|++|++..
T Consensus       163 ~~~~r~~~~l~-~~~~~~~~~~~~  185 (477)
T KOG2319|consen  163 EMRNRREGPLE-GENKLYFTCEDS  185 (477)
T ss_pred             HHHHHHhhhHH-HHHHHHHHHhhH
Confidence            99999999887 999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2ot3_A	274	Crystal Structure Of Rabex-5 Vps9 Domain In Complex		2e-46
1txu_A	273	Crystal Structure Of The Vps9 Domain Of Rabex-5 Len		5e-43
2efc_A	267	Ara7-GdpATVPS9A Length = 267		5e-18
2efh_A	267	Ara7-GdpATVPS9A(D185N) Length = 267		2e-17

>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With Nucleotide Free Rab21 Length = 274

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)
Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL IQ
Sbjct: 60  QDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 116
Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + IF
Sbjct: 117 KRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 176
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
             ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 177 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 236

>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5 Length = 273

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 4/180 (2%)
Query: 2   QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
           Q+FY   A+R +       V  +  E + D +EKY    LY  +FCP  T DE +DL IQ
Sbjct: 62  QDFYHNVAERXQTR---GKVPPERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQ 118
Query: 62  ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
           +RIR L+WV  + L   + E    V D V  ++T ++E DS R P+DKLAC+  C + IF
Sbjct: 119 KRIRALRWVTPQXLCVPVNEDIPEVSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIF 178
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
             ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RL +GE GY+FTNL
Sbjct: 179 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNL 238

>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A Length = 267

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
           +Q F+         H L++  S ++ +   D +EKY M  L+  +F    T +   D ++
Sbjct: 52  VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASN-TEEVIADEKL 110
Query: 61  QERIRQLK-WVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRD 119
            +++  ++ +++ ++LD      N +   L    + K+   +  +AP+DKL C++ CC+ 
Sbjct: 111 FQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNCCKV 167
Query: 120 IF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
           I  LLL +S+        ADEFLP LI++ +K NP +L SN+ ++ R+   ++L+ GEA 
Sbjct: 168 INNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-GEAA 226
Query: 175 YFFTNLVS 182
           YFFTN++S
Sbjct: 227 YFFTNILS 234

>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N) Length = 267

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
           +Q F+         H L++  S ++ +   D +EKY M  L+  +F    T +   D ++
Sbjct: 52  VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASN-TEEVIADEKL 110
Query: 61  QERIRQLK-WVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRD 119
            +++  ++ +++ ++LD      N +   L    + K+   +  +AP+DKL C++ CC+ 
Sbjct: 111 FQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNCCKV 167
Query: 120 IF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
           I  LLL +S+        A+EFLP LI++ +K NP +L SN+ ++ R+   ++L+ GEA 
Sbjct: 168 INNLLLNASIASNENAPGANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-GEAA 226
Query: 175 YFFTNLVS 182
           YFFTN++S
Sbjct: 227 YFFTNILS 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	4e-49
2efe_A	267	Similarity to vacuolar protein sorting-associated	6e-39

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  159 bits (403), Expect = 4e-49
 Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 4/183 (2%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
            Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL I
Sbjct: 59  AQDFYHNVAERMQTRG---KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAI 115

Query: 61  QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
           Q+RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + I
Sbjct: 116 QKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI 175

Query: 121 FLL-LQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTN 179
           F     +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTN
Sbjct: 176 FNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTN 235

Query: 180 LVS 182
           L  
Sbjct: 236 LCC 238

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  132 bits (334), Expect = 6e-39
 Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
           +Q F+         H L++  S ++ +   D +EKY M  L+  +F          +   
Sbjct: 52  VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLF 111

Query: 61  QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
           Q+     ++++ ++LD      N         +  +L +++  +AP+DKL C++ CC+ I
Sbjct: 112 QKMSLVQQFISPENLDIQPTFQN---ESSWLLAQKELQKINMYKAPRDKLVCILNCCKVI 168

Query: 121 FLLLQ-----SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGY 175
             LL      S+     ADEFLP LI++ +K NP +L SN+ ++ R+   ++L  GEA Y
Sbjct: 169 NNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKL-VGEAAY 227

Query: 176 FFTNLVS 182
           FFTN++S
Sbjct: 228 FFTNILS 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=2.6e-48  Score=316.70  Aligned_cols=180  Identities=48%  Similarity=0.867  Sum_probs=167.8

Q ss_pred             ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhhCCCCCCccccc
Q psy10331          1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIE   80 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~   80 (183)
                      ||+|+..+.++|..+  |+. ++++++.++++||+|||++||+.+|++..+.+..+|..++++|+.|++++|+||||+.+
T Consensus        59 v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L~~i~~~~L~I~~~  135 (274)
T 2ot3_A           59 AQDFYHNVAERMQTR--GKV-PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVN  135 (274)
T ss_dssp             HHHHHHHHHHHHHST--TCC-CHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCC
T ss_pred             HHHHHHHHHHHHHHH--hcc-CHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHcCCCHHHcCCCcc
Confidence            689999999999987  875 67899999999999999999999999987778899999999999999999999999987


Q ss_pred             ccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHH
Q psy10331         81 ETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFV  159 (183)
Q Consensus        81 ~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI  159 (183)
                      ...+++.+.|..|+++|++|+.++||+|||.||++||+.|++.++.+. .++|||||||+||||||||+||+|.||++||
T Consensus       136 ~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL~~l~~~~k~I~~~l~~~~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI  215 (274)
T 2ot3_A          136 EDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYI  215 (274)
T ss_dssp             TTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHHHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence            655556677899999999999999999999999999999999987664 6899999999999999999999999999999


Q ss_pred             HHccccccccCcchhhHHhhhcCC
Q psy10331        160 TRFCNANRLMSGEAGYFFTNLVSI  183 (183)
Q Consensus       160 ~~f~~~~~l~~gE~~Y~lt~~~aA  183 (183)
                      ++|+++++++.||.|||||||+||
T Consensus       216 ~~F~~~~~l~~GE~gY~lttl~aA  239 (274)
T 2ot3_A          216 TRFCNPSRLMTGEDGYYFTNLCCA  239 (274)
T ss_dssp             HHHSCTTTTTSSHHHHHHHHHHHH
T ss_pred             HHHcCcccccCCHHHHHHHHHHHH
Confidence            999999887789999999999987

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=1.7e-48  Score=316.90  Aligned_cols=178  Identities=30%  Similarity=0.572  Sum_probs=164.5

Q ss_pred             ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhh-hhCCCCCCcccc
Q psy10331          1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQL-KWVNAKHLDCGI   79 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l-~~i~~~~l~i~~   79 (183)
                      ||+|++.+.++|++|+.|+++++++++.+.++||+||+++||+++|++.. .+.++|..+++||+.| ++++|+||||+.
T Consensus        52 v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v~~~ly~~lf~~~~-~d~~~D~~L~~ki~~l~~~i~~~~L~I~~  130 (267)
T 2efe_A           52 VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNT-EEVIADEKLFQKMSLVQQFISPENLDIQP  130 (267)
T ss_dssp             HHHHHHHHHHHHHSCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHSSCSH-HHHHHHHHHHHHHHHHTTTCCGGGGTCCG
T ss_pred             HHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCch-hhHHHHHHHHHHHHHHHccCCHHHcCCCC
Confidence            68999999999999999999999999999999999999999999999974 4788999999999999 699999999997


Q ss_pred             cccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhc-----cCCCCChhhhHHHHHHHHHhcCccchhH
Q psy10331         80 EETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQS-----SVGPASADEFLPALIFLVLKMNPARLKS  154 (183)
Q Consensus        80 ~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~-----~~~~~~ADdlLPiliyviika~~~~l~s  154 (183)
                      .....   ..|..|+++|++|+.++||+|||.||++||+.|++.++.     +..++|||||||+||||||||+||+|.|
T Consensus       131 ~~~~~---~~~~~A~~eL~ki~~~~sP~dKl~~l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s  207 (267)
T 2efe_A          131 TFQNE---SSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHS  207 (267)
T ss_dssp             GGCCT---TCSHHHHHHHHTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHH
T ss_pred             ccCCc---ccHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHH
Confidence            66432   357889999999999999999999999999999998863     2278999999999999999999999999


Q ss_pred             HHHHHHHccccccccCcchhhHHhhhcCC
Q psy10331        155 NIHFVTRFCNANRLMSGEAGYFFTNLVSI  183 (183)
Q Consensus       155 ~i~yI~~f~~~~~l~~gE~~Y~lt~~~aA  183 (183)
                      |++||++|++++.+ .||.|||||||+||
T Consensus       208 ~l~yI~~f~~~~~l-~gE~gY~lt~l~aA  235 (267)
T 2efe_A          208 NLLYIQRYRRESKL-VGEAAYFFTNILSA  235 (267)
T ss_dssp             HHHHHHHHSCTTTS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccc-CCHHHHHHHHHHHH
Confidence            99999999999875 89999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	1e-47

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  153 bits (388), Expect = 1e-47
 Identities = 87/183 (47%), Positives = 120/183 (65%), Gaps = 4/183 (2%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
            Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL I
Sbjct: 44  AQDFYHNVAERMQTRG---KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAI 100

Query: 61  QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
           Q+RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + I
Sbjct: 101 QKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI 160

Query: 121 FLLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTN 179
           F  ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTN
Sbjct: 161 FNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTN 220

Query: 180 LVS 182
           L  
Sbjct: 221 LCC 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=313.55  Aligned_cols=180  Identities=48%  Similarity=0.881  Sum_probs=168.1

Q ss_pred             ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhhCCCCCCccccc
Q psy10331          1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIE   80 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~   80 (183)
                      ||+|++.+.+++.   .|.+.++++++.+.++||+|||++||+++|++....+.++|..++++++.|+|++|+|||++..
T Consensus        44 i~~f~~~~~~~l~---~~~~~~~~~~~~~~~~vEk~i~~~ly~~~f~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~  120 (249)
T d2ot3a1          44 AQDFYHNVAERMQ---TRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVN  120 (249)
T ss_dssp             HHHHHHHHHHHHH---STTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCC
T ss_pred             HHHHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhccCCHHhcCCccc
Confidence            5899999999996   5788899999999999999999999999999988888999999999999999999999999877


Q ss_pred             ccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHH
Q psy10331         81 ETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFV  159 (183)
Q Consensus        81 ~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI  159 (183)
                      ...+.....|..|+.+|++|+.++||+|||.||.+||+.|++.+..+. +++|||||||+||||||||+||+|.||++||
T Consensus       121 ~~~~~~~~~~~~A~~~L~~i~~~~sP~dKl~~i~~~~~~I~~~~~~~~~~~~~ADd~LP~liyviika~~~~l~S~i~yI  200 (249)
T d2ot3a1         121 EDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYI  200 (249)
T ss_dssp             TTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHHHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHcChhhHHHHHHHH
Confidence            665556677899999999999999999999999999999999987654 7899999999999999999999999999999


Q ss_pred             HHccccccccCcchhhHHhhhcCC
Q psy10331        160 TRFCNANRLMSGEAGYFFTNLVSI  183 (183)
Q Consensus       160 ~~f~~~~~l~~gE~~Y~lt~~~aA  183 (183)
                      ++|++++++++||.|||||||+||
T Consensus       201 ~~F~~~~~l~~gE~~Y~lt~l~aA  224 (249)
T d2ot3a1         201 TRFCNPSRLMTGEDGYYFTNLCCA  224 (249)
T ss_dssp             HHHSCTTTTTSSHHHHHHHHHHHH
T ss_pred             HHHhChhhccCcHHHHHHHHHHHH
Confidence            999999888899999999999987