Psyllid ID: psy10337

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS
Secondary Structure (PSIPRED)
cEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mshgvfggngfnsdypveKLMRDAKIYQIYEGTAQIQRLIVVFggngfnsdypvEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS
Flexible Loop (DISEMBL)
mshgvfggngfnsdypVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSraiierns
Low Complexity Region (SEG)
MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS
Disordered region (IsUnstruct)
*******GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII****
Disordered Region (DISOPRED)
MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE***
Disordered Region (DISEMBL)
MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS
Disordered Region (DISPRO)
***GVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q9VSA3	419	Probable medium-chain spe	yes	N/A	0.517	0.107	0.8	5e-16
A8XNF0	417	Probable medium-chain spe	N/A	N/A	0.505	0.105	0.75	2e-15
A8WP91	408	Probable medium-chain spe	N/A	N/A	0.563	0.120	0.693	2e-15
Q22347	417	Probable medium-chain spe	yes	N/A	0.689	0.143	0.583	3e-15
Q3SZB4	421	Medium-chain specific acy	yes	N/A	0.528	0.109	0.782	3e-15
P41367	421	Medium-chain specific acy	yes	N/A	0.528	0.109	0.782	4e-15
P45952	421	Medium-chain specific acy	yes	N/A	0.528	0.109	0.760	5e-15
P08503	421	Medium-chain specific acy	yes	N/A	0.528	0.109	0.760	9e-15
Q8HXY8	421	Medium-chain specific acy	N/A	N/A	0.471	0.097	0.804	1e-14
P11310	421	Medium-chain specific acy	yes	N/A	0.528	0.109	0.739	2e-14

>sp|Q9VSA3|ACADM_DROME Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/45 (80%), Positives = 42/45 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR + E
Sbjct: 369 VQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMYE 413

This enzyme is specific for acyl chain lengths of 4 to 16.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 3

>sp|A8XNF0|ACAD1_CAEBR Probable medium-chain specific acyl-CoA dehydrogenase 1, mitochondrial OS=Caenorhabditis briggsae GN=CBG15946 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/44 (75%), Positives = 42/44 (95%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQR+++SR ++
Sbjct: 363 VQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 406

This enzyme is specific for acyl chain lengths of 4 to 16.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|A8WP91|ACAD2_CAEBR Probable medium-chain specific acyl-CoA dehydrogenase 2, mitochondrial OS=Caenorhabditis briggsae GN=CBG00953 PE=3 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 46/49 (93%)

Query: 35  QIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           +I+RL+++F  NGFNS+YPVEKLMRDAKIYQIYEGT+QIQR+++SR ++
Sbjct: 349 RIRRLLMLFRCNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 397

This enzyme is specific for acyl chain lengths of 4 to 16.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q22347|ACADM_CAEEL Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial OS=Caenorhabditis elegans GN=acdh-10 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           AK +            + +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQR+++SR ++
Sbjct: 347 AKCFAADTANQAATNAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 406

This enzyme is specific for acyl chain lengths of 4 to 16.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q3SZB4|ACADM_BOVIN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + +FGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  I R
Sbjct: 373 VQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIGR 418

This enzyme is specific for acyl chain lengths of 4 to 16.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P41367|ACADM_PIG Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R  I R
Sbjct: 373 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 418

This enzyme is specific for acyl chain lengths of 4 to 16.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P45952|ACADM_MOUSE Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + +FGG GFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  IE+
Sbjct: 373 VQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418

This enzyme is specific for acyl chain lengths of 4 to 16.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P08503|ACADM_RAT Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + +FGG GFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  IE+
Sbjct: 373 VQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418

This enzyme is specific for acyl chain lengths of 4 to 16.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q8HXY8|ACADM_MACFA Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 40/41 (97%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
           + +FGGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLI++R
Sbjct: 373 VQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIIAR 413

This enzyme is specific for acyl chain lengths of 4 to 16.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P11310|ACADM_HUMAN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R  I++
Sbjct: 373 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 418

This enzyme is specific for acyl chain lengths of 4 to 16.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
242019871	419	ATP-binding cassette subfamily E, member	0.528	0.109	0.826	1e-15
312383488	1028	hypothetical protein AND_03389 [Anophele	0.517	0.043	0.844	2e-15
239791811	150	ACYPI001113 [Acyrthosiphon pisum]	0.540	0.313	0.808	2e-15
193706910	419	PREDICTED: probable medium-chain specifi	0.540	0.112	0.808	3e-15
195378841	420	GJ11482 [Drosophila virilis] gi|19540419	0.517	0.107	0.822	4e-15
289741273	420	medium-chain acyl-CoA dehydrogenase [Glo	0.517	0.107	0.822	6e-15
427789667	420	Putative microtubule associated complex	0.528	0.109	0.782	6e-15
321462443	277	hypothetical protein DAPPUDRAFT_188892 [	0.551	0.173	0.75	6e-15
321457669	167	hypothetical protein DAPPUDRAFT_62875 [D	0.551	0.287	0.75	6e-15
332025636	434	Putative medium-chain specific acyl-CoA	0.517	0.103	0.822	7e-15

>gi|242019871|ref|XP_002430382.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis] gi|212515506|gb|EEB17644.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/46 (82%), Positives = 43/46 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI+SR + ER
Sbjct: 370 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIISREVFER 415

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383488|gb|EFR28556.1| hypothetical protein AND_03389 [Anopheles darlingi]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/45 (84%), Positives = 43/45 (95%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + VFGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR +IE
Sbjct: 371 VQVFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMIE 415

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239791811|dbj|BAH72322.1| ACYPI001113 [Acyrthosiphon pisum]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86
           + +FGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI+SR IIE+ 
Sbjct: 100 VQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIISRDIIEKT 146

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193706910|ref|XP_001952123.1| PREDICTED: probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Acyrthosiphon pisum]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86
           + +FGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI+SR IIE+ 
Sbjct: 369 VQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIISRDIIEKT 415

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378841|ref|XP_002048190.1| GJ11482 [Drosophila virilis] gi|195404194|ref|XP_002060435.1| GJ19560 [Drosophila virilis] gi|194140953|gb|EDW57380.1| GJ19560 [Drosophila virilis] gi|194155348|gb|EDW70532.1| GJ11482 [Drosophila virilis]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 42/45 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + +FGGNGFNSDYPVEKLMRDAKIYQIYEGT+QIQRLI+SR + E
Sbjct: 368 VQIFGGNGFNSDYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMYE 412

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741273|gb|ADD19384.1| medium-chain acyl-CoA dehydrogenase [Glossina morsitans morsitans]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 42/45 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + +FGGNGFNSDYPVEKLMRDAKIYQIYEGT+QIQRLI+SR + E
Sbjct: 369 VQIFGGNGFNSDYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMFE 413

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789667|gb|JAA60285.1| Putative microtubule associated complex [Rhipicephalus pulchellus]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + +FGGNGFNSDYPVEKLMRDAKIYQIYEGT+QIQRLI+ R ++ R
Sbjct: 373 VQIFGGNGFNSDYPVEKLMRDAKIYQIYEGTSQIQRLIIGRELLGR 418

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462443|gb|EFX73466.1| hypothetical protein DAPPUDRAFT_188892 [Daphnia pulex]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS 87
           + +FGGNG+N+DYPVEKLMRDAKIYQIYEGTAQIQRLI++R ++ R S
Sbjct: 225 VQIFGGNGYNTDYPVEKLMRDAKIYQIYEGTAQIQRLIIARELLSRAS 272

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321457669|gb|EFX68751.1| hypothetical protein DAPPUDRAFT_62875 [Daphnia pulex]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS 87
           + +FGGNG+N+DYPVEKLMRDAKIYQIYEGTAQIQRLI++R ++ R S
Sbjct: 115 VQIFGGNGYNTDYPVEKLMRDAKIYQIYEGTAQIQRLIIARELLSRAS 162

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025636|gb|EGI65798.1| Putative medium-chain specific acyl-CoA dehydrogenase, mitochondrial [Acromyrmex echinatior]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 42/45 (93%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + VFGG GFNS+YPVEKLMRDAKIYQIYEGTAQIQRLI+SRA+ +
Sbjct: 383 VQVFGGAGFNSEYPVEKLMRDAKIYQIYEGTAQIQRLIISRALFD 427

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
ZFIN|ZDB-GENE-040426-1945	426	acadm "acyl-Coenzyme A dehydro	0.505	0.103	0.818	2.8e-15
UNIPROTKB|J9P5S2	335	ACADM "Uncharacterized protein	0.528	0.137	0.804	5.7e-15
FB|FBgn0035811	419	CG12262 [Drosophila melanogast	0.517	0.107	0.8	7.4e-15
UNIPROTKB|F1P6W6	421	ACADM "Uncharacterized protein	0.528	0.109	0.804	1.2e-14
UNIPROTKB|Q3SZB4	421	ACADM "Medium-chain specific a	0.712	0.147	0.630	1.2e-14
WB|WBGene00020366	417	acdh-10 [Caenorhabditis elegan	0.505	0.105	0.75	1.6e-14
UNIPROTKB|B4DJE7	232	ACADM "Medium-chain-specific a	0.528	0.198	0.739	1.8e-14
UNIPROTKB|P41367	421	ACADM "Medium-chain specific a	0.528	0.109	0.782	2.1e-14
MGI|MGI:87867	421	Acadm "acyl-Coenzyme A dehydro	0.528	0.109	0.760	4.4e-14
RGD|2012	421	Acadm "acyl-CoA dehydrogenase,	0.528	0.109	0.760	4.4e-14

ZFIN|ZDB-GENE-040426-1945 acadm "acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 36/44 (81%), Positives = 42/44 (95%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
             + +FGGNGFNS+YPVEKLMRDAKIYQIYEGTAQIQRLI+SR ++
Sbjct:   378 VQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTAQIQRLIISREVL 421

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|J9P5S2 ACADM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 5.7e-15, P = 5.7e-15
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  I R
Sbjct:   287 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIGR 332

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

FB|FBgn0035811 CG12262 [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 36/45 (80%), Positives = 42/45 (93%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
             + +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR + E
Sbjct:   369 VQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMYE 413

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1P6W6 ACADM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  I R
Sbjct:   373 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIGR 418

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|Q3SZB4 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/65 (63%), Positives = 48/65 (73%)

Query:    24 AKIYQIYEGTAQIQRL---IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
             A I + Y G    Q     + +FGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R
Sbjct:   354 ASIAKAYAGDIANQLASDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAR 413

Query:    81 AIIER 85
               I R
Sbjct:   414 EHIGR 418

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA

GO:0045329 "carnitine biosynthetic process" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0006111 "regulation of gluconeogenesis" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

WB|WBGene00020366 acdh-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 192 (72.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 33/44 (75%), Positives = 42/44 (95%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
             + +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQR+++SR ++
Sbjct:   363 VQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 406

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B4DJE7 ACADM "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 34/46 (73%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R  I++
Sbjct:   184 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 229

GO:0001889 "liver development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0006111 "regulation of gluconeogenesis" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|P41367 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R  I R
Sbjct:   373 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 418

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA

GO:0045329 "carnitine biosynthetic process" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0006111 "regulation of gluconeogenesis" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

MGI|MGI:87867 Acadm "acyl-Coenzyme A dehydrogenase, medium chain" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 35/46 (76%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + +FGG GFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  IE+
Sbjct:   373 VQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0001889 "liver development" evidence=IMP

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005978 "glycogen biosynthetic process" evidence=IMP

GO:0006082 "organic acid metabolic process" evidence=IMP

GO:0006111 "regulation of gluconeogenesis" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0007507 "heart development" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0009437 "carnitine metabolic process" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016853 "isomerase activity" evidence=ISO

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=ISO;IMP

GO:0030424 "axon" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISO;IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0045329 "carnitine biosynthetic process" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0051791 "medium-chain fatty acid metabolic process" evidence=ISO;IMP

GO:0051793 "medium-chain fatty acid catabolic process" evidence=ISO

GO:0055007 "cardiac muscle cell differentiation" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=ISO;IMP

RGD|2012 Acadm "acyl-CoA dehydrogenase, C-4 to C-12 straight chain" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 35/46 (76%), Positives = 42/46 (91%)

Query:    40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
             + +FGG GFN++YPVEKLMRDAKIYQIYEGTAQIQRLI++R  IE+
Sbjct:   373 VQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0001889 "liver development" evidence=IEA;ISO

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA;TAS

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0006082 "organic acid metabolic process" evidence=ISO

GO:0006111 "regulation of gluconeogenesis" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;ISS;TAS

GO:0007507 "heart development" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0009409 "response to cold" evidence=IEA;ISO

GO:0009437 "carnitine metabolic process" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0016853 "isomerase activity" evidence=IDA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA;ISO

GO:0030424 "axon" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO;IDA

GO:0042493 "response to drug" evidence=IEP

GO:0042594 "response to starvation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=ISO;IDA

GO:0045329 "carnitine biosynthetic process" evidence=IEA;ISO

GO:0046688 "response to copper ion" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051791 "medium-chain fatty acid metabolic process" evidence=IEA;ISO

GO:0051793 "medium-chain fatty acid catabolic process" evidence=ISO;IDA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070991 "medium-chain-acyl-CoA dehydrogenase activity" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46703	ACDP_MYCLE	1, ., 3, ., 9, 9, ., -	0.6363	0.5057	0.1131	yes	N/A
P11310	ACADM_HUMAN	1, ., 3, ., 9, 9, ., 3	0.7391	0.5287	0.1092	yes	N/A
A5A6I0	ACADM_PANTR	1, ., 3, ., 9, 9, ., 3	0.7391	0.5287	0.1092	yes	N/A
P63427	ACDP_MYCTU	1, ., 3, ., 9, 9, ., -	0.6136	0.5057	0.1131	yes	N/A
P52042	ACDS_CLOAB	1, ., 3, ., 8, ., 1	0.5333	0.5172	0.1187	yes	N/A
P63428	ACDP_MYCBO	1, ., 3, ., 9, 9, ., -	0.6136	0.5057	0.1131	yes	N/A
P45867	ACDA_BACSU	1, ., 3, ., 9, 9, ., -	0.6	0.5172	0.1187	yes	N/A
P41367	ACADM_PIG	1, ., 3, ., 9, 9, ., 3	0.7826	0.5287	0.1092	yes	N/A
P08503	ACADM_RAT	1, ., 3, ., 9, 9, ., 3	0.7608	0.5287	0.1092	yes	N/A
Q22347	ACADM_CAEEL	1, ., 3, ., 9, 9, ., 3	0.5833	0.6896	0.1438	yes	N/A
Q3SZB4	ACADM_BOVIN	1, ., 3, ., 9, 9, ., 3	0.7826	0.5287	0.1092	yes	N/A
P45952	ACADM_MOUSE	1, ., 3, ., 9, 9, ., 3	0.7608	0.5287	0.1092	yes	N/A
Q9VSA3	ACADM_DROME	1, ., 3, ., 9, 9, ., 3	0.8	0.5172	0.1073	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	6e-24
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	2e-21
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	5e-17
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	4e-15
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	9e-15
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	4e-14
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	6e-14
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	3e-13
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	2e-12
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	4e-12
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	9e-12
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	2e-11
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	7e-11
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	1e-10
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	1e-09
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	3e-09
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	4e-09
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	1e-08
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	2e-08
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	4e-08
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	8e-08
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	9e-08
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	1e-06
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	3e-06
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	4e-05
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	5e-05
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	7e-05
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	2e-04
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	2e-04
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	3e-04
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	5e-04
pfam08028	134	pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase,	0.001
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	0.004

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 92.3 bits (229), Expect = 6e-24
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR  + +
Sbjct: 335 IFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 85.7 bits (212), Expect = 2e-21
 Identities = 33/37 (89%), Positives = 37/37 (100%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+
Sbjct: 335 IFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLII 371

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score = 73.1 bits (180), Expect = 5e-17
 Identities = 23/45 (51%), Positives = 37/45 (82%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + +FGG G+  DYPVE+  RDAKI +IYEGT++IQRL++++ +++
Sbjct: 329 VQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score = 68.1 bits (167), Expect = 4e-15
 Identities = 23/37 (62%), Positives = 31/37 (83%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGG G+  DYPVE+  RDAKI +IYEGT++IQRL++
Sbjct: 331 IFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVI 367

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 64.2 bits (157), Expect = 9e-15
 Identities = 19/42 (45%), Positives = 34/42 (80%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + GG G++ +YP+E+L RDA++ +I EGT++IQR I++R ++
Sbjct: 109 LLGGYGYSREYPLERLYRDARVLRIGEGTSEIQRNIIARRLL 150

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
           AK++            + + GG G++ +YPVE+ +RDA+  +I EGTA+IQRLI++R
Sbjct: 271 AKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 64.8 bits (158), Expect = 6e-14
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 36  IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
               + V GG G+  +YPVE+  RDA+I +IYEGT++IQRLI++R ++  
Sbjct: 340 ADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389

Length = 393

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 18/37 (48%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G++ +YP+E+L RDA++ +I EGT++IQR I+
Sbjct: 109 LLGGYGYSREYPLERLYRDARVLRIGEGTSEIQRNII 145

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 22/44 (50%), Positives = 34/44 (77%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + GG G+  DYPVE+ +RD +++QI EGT +I RLI++RA++ R
Sbjct: 332 LHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 20/37 (54%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G++ +YPVE+ +RDA+  +I EGTA+IQRLI+
Sbjct: 289 IHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLII 325

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 58.7 bits (142), Expect = 9e-12
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           V GG G+  +YPVE+  RDA+I +IYEGT++IQRLI+
Sbjct: 346 VHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLII 382

Length = 393

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 20/44 (45%), Positives = 34/44 (77%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I + GGNG+ +DYP  +L+RDAK+Y+I  GT++I+R+++ R + 
Sbjct: 332 IQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELF 375

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG 44
           V GG+G+  +YP+E+  RDA+I  IYEGT  IQ L ++  
Sbjct: 365 VHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I V GG+G+  +YP+E+  RDA+I  IYEGT  IQ L +    I
Sbjct: 363 IQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKI 406

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 32/41 (78%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
           I   GGNG+ ++YP  +L+RDAK+Y+I  GT++I+R+++ R
Sbjct: 358 IQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGR 398

Length = 404

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 18/37 (48%), Positives = 31/37 (83%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GGNG+ +DYP  +L+RDAK+Y+I  GT++I+R+++
Sbjct: 334 ILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVI 370

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  DYPVE+ +RD +++QI EGT +I RLI+
Sbjct: 332 LHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLII 368

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           VFGGNG+  ++PV +L R+A++  I+EGT  IQ L V R +
Sbjct: 376 VFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVL 416

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 30/35 (85%)

Query: 7   GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           GGNG+ ++YP  +L+RDAK+Y+I  GT++I+R+++
Sbjct: 362 GGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLI 396

Length = 404

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 18/45 (40%), Positives = 32/45 (71%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           I + GG GF  +Y VE+++RD +I++I+EGT +I RL ++   ++
Sbjct: 362 IQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQ 406

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 47.5 bits (113), Expect = 8e-08
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGG 45
           + GG GF  +Y VE+++RD +I++I+EGT +I RL +   G
Sbjct: 364 IHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTG 404

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
           VFGGNG+  ++PV +L R+A++  I+EGT  IQ L V+
Sbjct: 376 VFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVL 413

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + GG G+  +YP+ +  RDA++  IY GT +I + ++SR ++
Sbjct: 331 LHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQMV 372

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 32  GTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 76
           G     R + V+GG+G+     +E+++RDA+I  +YEGT  IQ L
Sbjct: 427 GVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQAL 471

Length = 622

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GGNG + +Y + + M + +    YEGT  I  LI+ RAI
Sbjct: 340 MLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAI 380

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 39
           V+GG+G+     +E+++RDA+I  +YEGT  IQ L
Sbjct: 437 VWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQAL 471

Length = 622

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 39.0 bits (91), Expect = 7e-05
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  +YP+ +  RDA++  IY GT +I + ++
Sbjct: 331 LHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELI 367

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 70
           I V GG G++ D PVE+L RDAK+ +I  GT
Sbjct: 363 IQVMGGMGYSRDMPVERLWRDAKLLEIGGGT 393

Length = 410

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           AK+Y        I   I + GG G+  +  V +  RD +  +I  GT +I   I  R I+
Sbjct: 318 AKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQIL 377

Query: 84  ER 85
           + 
Sbjct: 378 KD 379

Length = 381

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGT 33
           V GG G++ D PVE+L RDAK+ +I  GT
Sbjct: 365 VMGGMGYSRDMPVERLWRDAKLLEIGGGT 393

Length = 410

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 36  IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
           I + ++  G  G++    +E+ +RD   +QI +GTAQI + I++R
Sbjct: 326 IHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIAR 369

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 12/50 (24%), Positives = 18/50 (36%)

Query: 21  MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 70
            R           A + RL    GG+    D P+++  RDA     + G 
Sbjct: 83  ARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWRDAHAGAAHAGL 132

Length = 134

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GGNG  +D+ V K   D +    YEGT  I  L+  R I
Sbjct: 356 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREI 396

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG0140|consensus	408		99.82
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	99.7
KOG0141|consensus	421		99.63
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.62
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	99.6
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	99.6
PLN02636	686	acyl-coenzyme A oxidase	99.59
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	99.58
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	99.58
PLN02526	412	acyl-coenzyme A oxidase	99.58
PLN02312	680	acyl-CoA oxidase	99.58
KOG0139|consensus	398		99.57
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	99.57
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.57
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.57
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	99.56
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	99.56
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.56
PLN02876	822	acyl-CoA dehydrogenase	99.55
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	99.55
PLN02519	404	isovaleryl-CoA dehydrogenase	99.55
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.54
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	99.53
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	99.5
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	99.48
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	99.48
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	99.47
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.45
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	99.45
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.45
PLN02443	664	acyl-coenzyme A oxidase	99.45
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.44
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	99.44
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	99.43
KOG0137|consensus	634		99.42
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.34
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	99.2
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.03
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	98.68
KOG0138|consensus	432		98.45
KOG1469|consensus	392		98.4
PF08028	134	Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal	98.26
KOG0135|consensus	661		98.26
KOG0136|consensus	670		97.88
KOG0140|consensus	408		97.62
KOG0141|consensus	421		97.38
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	96.88
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	96.6
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	96.53
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	96.25
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	96.18
KOG0139|consensus	398		95.38
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	95.25
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	94.62
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	94.54
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	94.45
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	94.39
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	94.34
PLN02876	822	acyl-CoA dehydrogenase	94.29
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	94.29
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	94.15
PLN02636	686	acyl-coenzyme A oxidase	93.9
PLN02312	680	acyl-CoA oxidase	93.87
PLN02526	412	acyl-coenzyme A oxidase	93.8
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	93.53
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	93.37
PLN02519	404	isovaleryl-CoA dehydrogenase	93.34
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	93.27
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	93.25
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	93.13
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	93.07
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	93.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	92.83
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	92.78
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	91.64
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	91.19
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	90.9
PLN02443	664	acyl-coenzyme A oxidase	90.47
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	90.46
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	90.01
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	89.89
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	88.75
KOG0137|consensus	634		88.45

>KOG0140|consensus

Probab=99.82  E-value=3.3e-20  Score=113.72  Aligned_cols=80  Identities=44%  Similarity=0.726  Sum_probs=74.3

Q ss_pred             ccccccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337          7 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus         7 g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      .++..+++.+-..+++++|+++++.+-.++..|+|++||.||..|||+++++||+++.+|++||++|||.+|+|.+|.+|
T Consensus       327 aa~evd~~r~~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~  406 (408)
T KOG0140|consen  327 AAWEVDNGRRNSYYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKF  406 (408)
T ss_pred             HHHHhhcCCcchHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHh
Confidence            45556677666889999999999999999999999999999999999999999999999999999999999999999875

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=99.70  E-value=1.2e-16  Score=89.77  Aligned_cols=72  Identities=26%  Similarity=0.464  Sum_probs=67.1

Q ss_pred             cCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         12 NSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        12 ~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      +++.....+.+.+|+++++...++++.+++++|+.|+.++++++++++|++...+++|++|++++.|++.+|
T Consensus        79 ~~~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l  150 (150)
T PF00441_consen   79 DAGQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL  150 (150)
T ss_dssp             HTTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence            444445788899999999999999999999999999999999999999999999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>KOG0141|consensus

Probab=99.63  E-value=2.6e-16  Score=96.93  Aligned_cols=73  Identities=32%  Similarity=0.537  Sum_probs=67.4

Q ss_pred             CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +...+..++.+++|+++.+++++..++|++||.||.+|+|..|++||++...|+.||+||.|.+|+|.+..+|
T Consensus       349 g~~~~kdcag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e~  421 (421)
T KOG0141|consen  349 GNVDPKDCAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKEY  421 (421)
T ss_pred             CCCChhhhhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhccC
Confidence            3445677899999999999999999999999999999999999999999999999999999999999887654

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.62  E-value=1.3e-15  Score=101.79  Aligned_cols=66  Identities=30%  Similarity=0.437  Sum_probs=62.6

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHH-HHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR-LIVSRAII   83 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~-~~ia~~~l   83 (87)
                      ...++++|.++++.+.+++..++|+|||+||+++++++++|||++..+|++||++||+ ++|++.++
T Consensus       413 ~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll  479 (622)
T PTZ00456        413 GFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL  479 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence            3468899999999999999999999999999999999999999999999999999997 69999887

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=99.60  E-value=4.6e-15  Score=94.31  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS   87 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~   87 (87)
                      +.....+++|+++++.+.++++.+++++|+.||+++++++++|||++...+++|++|+++++|++.+++.|.
T Consensus       309 ~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~~  380 (380)
T PRK03354        309 ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR  380 (380)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcC
Confidence            345678899999999999999999999999999999999999999999999999999999999999988763

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=99.60  E-value=3.5e-15  Score=94.94  Aligned_cols=66  Identities=17%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA   81 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~   81 (87)
                      +....++++|+++++.+..+++.++|+|||+||+++++++++|||++..++++|+++++++.+++.
T Consensus       310 ~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~  375 (378)
T TIGR03203       310 ERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA  375 (378)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            445789999999999999999999999999999999999999999999999999999999999883

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PLN02636 acyl-coenzyme A oxidase

Probab=99.59  E-value=6.4e-15  Score=99.41  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=67.4

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +....++++|.++++.+.++++.|+|++||.||+.++++++++||++...+++|+++|++++||+.+++.|
T Consensus       417 ~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~  487 (686)
T PLN02636        417 DVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQY  487 (686)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999998754

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=99.58  E-value=1.8e-15  Score=95.89  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=60.7

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA   81 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~   81 (87)
                      +.....+++|+++++.+.++++.++|++||.||+++ |++++|||++..+|++||+|+++++|++.
T Consensus       306 ~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~  370 (372)
T TIGR03207       306 PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH  370 (372)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence            335568899999999999999999999999999999 99999999999999999999999999874

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=99.58  E-value=5.6e-15  Score=93.71  Aligned_cols=69  Identities=54%  Similarity=0.801  Sum_probs=64.8

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .....+++|+++++.+..+++.++|++||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus       310 ~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~  378 (378)
T cd01157         310 NTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK  378 (378)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence            345678899999999999999999999999999999999999999999999999999999999998763

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>PLN02526 acyl-coenzyme A oxidase

Probab=99.58  E-value=3.6e-15  Score=95.74  Aligned_cols=69  Identities=25%  Similarity=0.297  Sum_probs=65.1

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .....+++|+++++.+.++++.++|++||.||+++++++++|||++...+++|++|++++.|++.+++.
T Consensus       331 ~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~  399 (412)
T PLN02526        331 TPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI  399 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence            355688999999999999999999999999999999999999999999999999999999999999764

>PLN02312 acyl-CoA oxidase

Probab=99.58  E-value=8.2e-15  Score=98.81  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +....++++|.++++.+.++++.|+|+|||+||+.+++++++++|++...+++|+++|++++||+.+++.|
T Consensus       419 ~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~  489 (680)
T PLN02312        419 AIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEY  489 (680)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999988754

>KOG0139|consensus

Probab=99.57  E-value=1.1e-15  Score=94.92  Aligned_cols=63  Identities=37%  Similarity=0.552  Sum_probs=58.9

Q ss_pred             cccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHH
Q psy10337         10 GFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQ   72 (87)
Q Consensus        10 g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~   72 (87)
                      --+.+.|...+++|+|+++++.++.++++|+|++||.||++++|.+++|||+|...|++|++|
T Consensus       336 ~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn  398 (398)
T KOG0139|consen  336 MKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN  398 (398)
T ss_pred             HHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence            335677889999999999999999999999999999999999999999999999999999864

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=99.57  E-value=8.1e-15  Score=93.33  Aligned_cols=70  Identities=24%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      +.....+++|.++++.+..++..++|++||.||++++|++++|||++..++++|++++++++|++.+|+-
T Consensus       314 ~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~  383 (386)
T cd01151         314 ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI  383 (386)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence            3456789999999999999999999999999999999999999999999999999999999999998763

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.57  E-value=9.5e-15  Score=96.35  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=62.0

Q ss_pred             HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      ...+++|.++++.+..++..++|+|||.||+++++++++|||+++..|++||++||++.+++.+.+
T Consensus       376 l~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~  441 (538)
T PRK11561        376 LFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK  441 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence            356689999999999999999999999999999999999999999999999999999999998754

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.57  E-value=1.4e-14  Score=92.25  Aligned_cols=68  Identities=37%  Similarity=0.652  Sum_probs=65.7

Q ss_pred             HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ..++++|+++++.+..++..++|++||.||+.+++++++|||++..+|++|+++++++++++.+++..
T Consensus       323 ~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~  390 (393)
T COG1960         323 AEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence            78999999999999999999999999999999999999999999999999999999999999998763

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=99.56  E-value=1.5e-14  Score=92.02  Aligned_cols=74  Identities=24%  Similarity=0.362  Sum_probs=67.4

Q ss_pred             CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ++.+.....+++|+++++.+.+++..+++++||.||.+++|++++|||++...+++|++|++++.|++.+++.+
T Consensus       307 ~~~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~~  380 (381)
T PRK12341        307 NGQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKDY  380 (381)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhhc
Confidence            33344567899999999999999999999999999999999999999999999999999999999999998753

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=99.56  E-value=1.7e-14  Score=92.56  Aligned_cols=70  Identities=27%  Similarity=0.508  Sum_probs=66.6

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++.+|+++++.+.++++.++|++||.||+++++++++|||++...+++|++++++++|++.+|++.
T Consensus       339 ~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~~  408 (409)
T cd01161         339 YQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQHA  408 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhhC
Confidence            4567899999999999999999999999999999999999999999999999999999999999998764

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.56  E-value=1.4e-14  Score=92.54  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      ....++++|+++++.+.+++..++|++||.||+++++++++|||++..++++|++|+++++|++.++
T Consensus       327 ~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~  393 (394)
T cd01155         327 ARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL  393 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence            4577899999999999999999999999999999999999999999999999999999999999875

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>PLN02876 acyl-CoA dehydrogenase

Probab=99.55  E-value=1.7e-14  Score=99.10  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=65.9

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ....++++|+++++.+..+++.++|+|||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus       751 ~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~  819 (822)
T PLN02876        751 ARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR  819 (822)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence            356799999999999999999999999999999999999999999999999999999999999999875

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=99.55  E-value=2.7e-14  Score=91.65  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=64.1

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ....+++|.++++.+.++++.++|++||.||+++++++++|||++...+++|++|++++.|++.+++.
T Consensus       341 ~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~  408 (410)
T PTZ00461        341 RLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG  408 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence            45677899999999999999999999999999999999999999999999999999999999988764

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=99.55  E-value=1.8e-14  Score=92.34  Aligned_cols=68  Identities=31%  Similarity=0.594  Sum_probs=64.4

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ....+.+|+++++.+.+++..+++++||.||+++++++++|||++...+++|++|+++++|++.+|++
T Consensus       336 ~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~  403 (404)
T PLN02519        336 RKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE  403 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence            45677889999999999999999999999999999999999999999999999999999999999875

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-14  Score=96.46  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=66.5

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++++|.++++.+.++++.|+|+|||.||+++++++++++|++...+++|+++|++.+||+.+++.+
T Consensus       364 ~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~  433 (646)
T PTZ00460        364 THAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQL  433 (646)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999988764

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=99.53  E-value=3e-14  Score=90.43  Aligned_cols=68  Identities=40%  Similarity=0.622  Sum_probs=64.5

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ....+.+|+++++.+.++++.+++++||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus       308 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~  375 (375)
T cd01162         308 VKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR  375 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence            45678899999999999999999999999999999999999999999999999999999999998864

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=99.50  E-value=8.1e-14  Score=88.25  Aligned_cols=65  Identities=26%  Similarity=0.454  Sum_probs=62.0

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      ...++++|.++++.+.+++..+++++||.||+++++++++|||++...+++|++++++++|++.+
T Consensus       307 ~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~  371 (372)
T cd01160         307 VAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM  371 (372)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence            55788999999999999999999999999999999999999999999999999999999999864

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=99.48  E-value=5.3e-14  Score=89.46  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--------chHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--------YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--------~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      ....+.+|+++++.+.+++..+++++||.||+++        +++++++||++...+++|++++++.+|++.++|
T Consensus       306 ~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~  380 (380)
T cd01152         306 GAEASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG  380 (380)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999999988        799999999999999999999999999998875

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=99.48  E-value=1.4e-13  Score=87.24  Aligned_cols=67  Identities=34%  Similarity=0.660  Sum_probs=62.9

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      ....+.+|+++++.+.+++..+++++||.||+++++++++|||++..++++|++++++++|++.+++
T Consensus       310 ~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~  376 (376)
T cd01156         310 PKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK  376 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence            4567788999999999999999999999999999999999999999999999999999999988764

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=99.47  E-value=1e-13  Score=88.73  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=61.1

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHH----------HhcCcccCC----chHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVV----------FGGNGFNSD----YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~----------~G~~g~~~~----~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      ...++++|+++++.+..+++.++|+          |||+||+++    ++++++|||++..+|++|++|||+++|++.+|
T Consensus       314 ~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l  393 (395)
T TIGR03204       314 NPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL  393 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence            3579999999999999999999985          889999865    57999999999999999999999999999887


Q ss_pred             H
Q psy10337         84 E   84 (87)
Q Consensus        84 ~   84 (87)
                      +
T Consensus       394 ~  394 (395)
T TIGR03204       394 G  394 (395)
T ss_pred             C
Confidence            5

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.45  E-value=1.7e-13  Score=91.76  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=67.2

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +....++++|.++++.+.++++.|+|++||.||+.+++++++++|++...+++|+++++++.+++.+++.|
T Consensus       376 ~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~  446 (610)
T cd01150         376 ELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKY  446 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999988764

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=99.45  E-value=6.3e-14  Score=95.50  Aligned_cols=66  Identities=20%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--chHHHHhhhhhhHHhhhCHHHHHHHHH
Q psy10337         13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV   78 (87)
Q Consensus        13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--~~~~~~~~~~~~~~i~~g~~~~~~~~i   78 (87)
                      .+......++++|+++++.+..+++.++|+|||.||+++  ++++++|||+++..|++|+++++|+.|
T Consensus       399 ~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i  466 (777)
T PRK09463        399 LGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM  466 (777)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence            333346788999999999999999999999999999987  899999999999999999999999987

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.45  E-value=1.9e-13  Score=88.02  Aligned_cols=63  Identities=35%  Similarity=0.569  Sum_probs=60.3

Q ss_pred             HHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         20 LMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        20 ~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      ..+++|+++++.+.++++.++|++||.||+++++++++|||+++.+|++||+|||+..+.+.+
T Consensus       354 ~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~  416 (418)
T cd01154         354 ATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVL  416 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHh
Confidence            578899999999999999999999999999999999999999999999999999999998865

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PLN02443 acyl-coenzyme A oxidase

Probab=99.45  E-value=2.5e-13  Score=91.55  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=65.8

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++++|.++++.+.++++.|+|+|||.||+.+++++++++|++...+++|+++++++++++.+++.+
T Consensus       373 ~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~  442 (664)
T PLN02443        373 AHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTV  442 (664)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999999999999999999888754

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.44  E-value=2.9e-13  Score=85.83  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=63.8

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHH-HHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAIIE   84 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~ia~~~l~   84 (87)
                      ...++++|.++++.+.++++.+++++|+.||.++++++++|||++...+++|++ |++++.|++.+|+
T Consensus       303 ~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~  370 (370)
T cd01159         303 RARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG  370 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence            456888999999999999999999999999999999999999999999999999 9999999999875

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=99.44  E-value=4.7e-13  Score=84.71  Aligned_cols=69  Identities=39%  Similarity=0.708  Sum_probs=64.8

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +.....+.+|+++++.+.+++..+++++|+.||+++++++++|||++...+++|++|++++.|++.+|+
T Consensus       305 ~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~  373 (373)
T cd01158         305 PFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK  373 (373)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence            345678889999999999999999999999999999999999999999999999999999999999875

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=99.43  E-value=3.2e-13  Score=92.04  Aligned_cols=63  Identities=13%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--chHHHHhhhhhhHHhhhCHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV   78 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--~~~~~~~~~~~~~~i~~g~~~~~~~~i   78 (87)
                      .....++++|+++++.+..+++.++|+|||.||+++  ++++++|||+++..|++|+++++|+.+
T Consensus       401 ~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~  465 (774)
T PRK13026        401 KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM  465 (774)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence            346788999999999999999999999999999998  899999999999999999999999854

>KOG0137|consensus

Probab=99.42  E-value=2.3e-13  Score=89.26  Aligned_cols=68  Identities=31%  Similarity=0.489  Sum_probs=63.8

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      +...+.++.|+++.+.++.++..++|++||+||+.++++++.+||++.++|++|++||++..||..-+
T Consensus       392 d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~  459 (634)
T KOG0137|consen  392 DVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGL  459 (634)
T ss_pred             eeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999987644

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.34  E-value=2.5e-12  Score=82.56  Aligned_cols=63  Identities=37%  Similarity=0.631  Sum_probs=58.0

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHH-HHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSR   80 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~-~ia~   80 (87)
                      ....+++|+++++.+.+++..+++++||.||.++++++++|||++...+++|+++++++ .|++
T Consensus       341 ~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~  404 (407)
T cd01153         341 DLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR  404 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence            34567899999999999999999999999999999999999999999999999999987 5544

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=99.20  E-value=3.7e-11  Score=74.81  Aligned_cols=64  Identities=36%  Similarity=0.611  Sum_probs=60.1

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHH
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR   80 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~   80 (87)
                      .....+.+|.++++.+..+++.+++++||.||+++++++++|||++...+++|++++++..+++
T Consensus       264 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~  327 (327)
T cd00567         264 ARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR  327 (327)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence            4567889999999999999999999999999999999999999999999999999999988763

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.03  E-value=4.9e-10  Score=71.30  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=56.2

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      ....++++|+++++.+.++++.++|++|+.||+++++++++|||++...+++..+ -+..+++..++
T Consensus       307 ~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~  372 (377)
T cd01163         307 AALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYAL  372 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhc
Confidence            3567889999999999999999999999999999999999999999999887664 44455555544

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=98.68  E-value=1.9e-08  Score=66.77  Aligned_cols=59  Identities=5%  Similarity=-0.024  Sum_probs=49.8

Q ss_pred             ccccCC-ChHHHHHHHhhhHhh---HhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHH
Q psy10337          9 NGFNSD-YPVEKLMRDAKIYQI---YEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   75 (87)
Q Consensus         9 ~g~~~~-~~~~~~~~~aK~~~~---~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~   75 (87)
                      +-++.+ .+...+++++|+|++   +....+++.++|        +++|+++.+||+|..+|++||+|+++
T Consensus       300 ~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~  362 (520)
T PTZ00457        300 ANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY  362 (520)
T ss_pred             HHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence            334444 356789999999999   777777777766        79999999999999999999999998

>KOG0138|consensus

Probab=98.45  E-value=2.3e-07  Score=57.94  Aligned_cols=75  Identities=23%  Similarity=0.286  Sum_probs=69.7

Q ss_pred             ccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         11 FNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        11 ~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ++.+...+..++..|-+.+..+.+++.++.+++||.|..+|+.+.+++.+.-....|+||.||+-.++++.+.+-
T Consensus       353 kd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGi  427 (432)
T KOG0138|consen  353 KDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI  427 (432)
T ss_pred             hhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhh
Confidence            466677788999999999999999999999999999999999999999999999999999999999999987653

>KOG1469|consensus

Probab=98.40  E-value=3.3e-08  Score=60.83  Aligned_cols=69  Identities=22%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      ....+++|.|+.++..+..+.+.|+|++||.|.+.++|+..+|.-++..+|.+|+.++++..|++.-+.
T Consensus       314 ~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~  382 (392)
T KOG1469|consen  314 GAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELR  382 (392)
T ss_pred             hhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence            345678999999999999999999999999999999999999999999999999999999999886543

>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1

Probab=98.26  E-value=2.3e-06  Score=47.43  Aligned_cols=53  Identities=21%  Similarity=0.292  Sum_probs=47.6

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGT   70 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~   70 (87)
                      .......|.++.+.+.++++.++++.|+.++...+|++|+|||.+....+...
T Consensus        80 ~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~  132 (134)
T PF08028_consen   80 RARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL  132 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence            45577789999999999999999999999999999999999999998877654

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.

>KOG0135|consensus

Probab=98.26  E-value=4.5e-07  Score=60.20  Aligned_cols=73  Identities=19%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS   87 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~   87 (87)
                      ..+...++-+|-+.+....+..+.|.+.+||+||..++.+..+-.|--..+.++|.|.|+.+++++.+|++|.
T Consensus       395 keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~  467 (661)
T KOG0135|consen  395 KEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYV  467 (661)
T ss_pred             hHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999999999873

>KOG0136|consensus

Probab=97.88  E-value=6.1e-06  Score=55.72  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +.....+-.|..++....+.++.|...+||+||++-..+..+|-.+.....|+|.|-|+..++|+-+++.|
T Consensus       380 eLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~  450 (670)
T KOG0136|consen  380 ELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSY  450 (670)
T ss_pred             HHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHH
Confidence            34667888999999999999999999999999999999999999999999999999999999999887754

>KOG0140|consensus

Probab=97.62  E-value=5.7e-05  Score=47.58  Aligned_cols=39  Identities=79%  Similarity=1.328  Sum_probs=35.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI   40 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~   40 (87)
                      ++||+||+||..++|.+.+.+++|++....+++.+++.+
T Consensus       359 AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlv  397 (408)
T KOG0140|consen  359 AVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLV  397 (408)
T ss_pred             HHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHH
Confidence            579999999999999999999999999999998877654

>KOG0141|consensus

Probab=97.38  E-value=6.8e-05  Score=47.32  Aligned_cols=39  Identities=46%  Similarity=0.937  Sum_probs=36.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI   40 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~   40 (87)
                      |+|++||+||..++|..+..+++|++....+++.+++-+
T Consensus       374 ~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~l  412 (421)
T KOG0141|consen  374 AIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLL  412 (421)
T ss_pred             HHhhccCcccccccchhhhhhhceeeeccCChHHHHHHH
Confidence            689999999999999999999999999999999887643

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=96.88  E-value=0.00077  Score=43.44  Aligned_cols=38  Identities=13%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      |+|+||+.||+.+++++++++.+|.+....+.+..+..
T Consensus       333 aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~  370 (378)
T TIGR03203       333 SIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLS  370 (378)
T ss_pred             HHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHH
Confidence            68999999999999999999999999999998877654

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=96.60  E-value=0.0016  Score=45.67  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=43.2

Q ss_pred             cccccccccccCC--ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCc
Q psy10337          2 SHGVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY   52 (87)
Q Consensus         2 ~~~i~g~~g~~~~--~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~   52 (87)
                      |+|+|||.||+.+  +++++.++.+|+..+..+.++..+.+-++| .|.++=+
T Consensus       424 AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ifg-qga~rch  475 (774)
T PRK13026        424 AMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLMIFG-QGATRCH  475 (774)
T ss_pred             HHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHHHhh-ccHhhCC
Confidence            6899999999988  889999999999999999999999998887 4444433

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=96.53  E-value=0.0046  Score=42.59  Aligned_cols=36  Identities=42%  Similarity=0.751  Sum_probs=33.4

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ   37 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~   37 (87)
                      ++|+|||.||.+++++++.++++|+.....+++.++
T Consensus       434 aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq  469 (622)
T PTZ00456        434 CLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQ  469 (622)
T ss_pred             HHHhccCCCccCCchHHHHHHHhhcccccCChHHHH
Confidence            689999999999999999999999999999987765

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=96.25  E-value=0.0029  Score=42.86  Aligned_cols=36  Identities=28%  Similarity=0.602  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ   37 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~   37 (87)
                      |+|+|||.||.+++++++.++++++.....++..++
T Consensus       396 Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~  431 (538)
T PRK11561        396 AMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIM  431 (538)
T ss_pred             HHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHH
Confidence            689999999999999999999999999888877654

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=96.18  E-value=0.0028  Score=44.61  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=39.2

Q ss_pred             cccccccccccCC--ChHHHHHHHhhhHhhHhHHHHHHHHHHHHh
Q psy10337          2 SHGVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIVVFG   44 (87)
Q Consensus         2 ~~~i~g~~g~~~~--~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G   44 (87)
                      |+|+|||.||..+  +++++.++++++..+..+.+...+.+-++|
T Consensus       425 AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~iifg  469 (777)
T PRK09463        425 AMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLMIFG  469 (777)
T ss_pred             HHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHHHcC
Confidence            6899999999987  889999999999999999999888887765

>KOG0139|consensus

Probab=95.38  E-value=0.0024  Score=40.98  Aligned_cols=32  Identities=50%  Similarity=0.899  Sum_probs=29.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGT   33 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~   33 (87)
                      |+|+.||.||+.|.|.++.++++|+.....++
T Consensus       365 Ciq~lGG~Gyt~d~paek~yRDarI~~IyeGt  396 (398)
T KOG0139|consen  365 CIQWLGGVGYTKDFPAEKFYRDARIGEIYEGT  396 (398)
T ss_pred             HHHHHhcccccccccHHHHhhhceeeeeecCC
Confidence            78999999999999999999999998876654

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=95.25  E-value=0.015  Score=37.48  Aligned_cols=38  Identities=55%  Similarity=1.016  Sum_probs=33.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..+++++++.+.++......+++..+..
T Consensus       343 a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~  380 (393)
T COG1960         343 AVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRL  380 (393)
T ss_pred             HHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHH
Confidence            68999999999999999999999999988888776553

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=94.62  E-value=0.028  Score=36.12  Aligned_cols=37  Identities=84%  Similarity=1.355  Sum_probs=33.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||+.++++++.++.++......+....+.
T Consensus       332 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~  368 (378)
T cd01157         332 AVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQR  368 (378)
T ss_pred             HHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHH
Confidence            6899999999999999999999999999888877665

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=94.54  E-value=0.024  Score=31.43  Aligned_cols=38  Identities=42%  Similarity=0.842  Sum_probs=33.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      +++++|+.|+.+++++++..+.++.+....+.+.+...
T Consensus       106 ~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~  143 (150)
T PF00441_consen  106 AMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRN  143 (150)
T ss_dssp             HHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHH
T ss_pred             hhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHH
Confidence            57899999999999999999999999998888877653

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=94.45  E-value=0.035  Score=36.21  Aligned_cols=37  Identities=43%  Similarity=0.728  Sum_probs=33.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||..+++.++.++.++......+....+.
T Consensus       362 a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~  398 (410)
T PTZ00461        362 AIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHH  398 (410)
T ss_pred             HHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHH
Confidence            6799999999999999999999999999998888765

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=94.39  E-value=0.032  Score=36.03  Aligned_cols=37  Identities=30%  Similarity=0.613  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||.+++++++.+++++......+.+..+.
T Consensus       337 a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~  373 (386)
T cd01151         337 AREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHA  373 (386)
T ss_pred             HHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHH
Confidence            6799999999999999999999999999888766543

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=94.34  E-value=0.031  Score=36.23  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||..++++++..+.+|.+....+...++.
T Consensus       349 a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~  385 (394)
T cd01155         349 AIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHL  385 (394)
T ss_pred             HHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHH
Confidence            6789999999999999999999999999998887765

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>PLN02876 acyl-CoA dehydrogenase

Probab=94.29  E-value=0.039  Score=39.23  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||+.++++++.++.+|......+....+.
T Consensus       773 a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~  809 (822)
T PLN02876        773 AMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHL  809 (822)
T ss_pred             HHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHH
Confidence            6899999999999999999999999999999887776

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=94.29  E-value=0.033  Score=35.78  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||+.+ ++++.+++++......+.+.++.
T Consensus       329 a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~  364 (372)
T TIGR03207       329 CLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMK  364 (372)
T ss_pred             HHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHH
Confidence            6899999999999 99999999999999999988776

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=94.15  E-value=0.037  Score=35.58  Aligned_cols=37  Identities=46%  Similarity=0.820  Sum_probs=33.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..+++..+..++++......+...+..
T Consensus       329 ~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~  365 (375)
T cd01162         329 ALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMR  365 (375)
T ss_pred             HHHHhcccccccCChHHHHHHHhhcceeecCHHHHHH
Confidence            6789999999999999999999999999888876665

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>PLN02636 acyl-coenzyme A oxidase

Probab=93.90  E-value=0.041  Score=38.51  Aligned_cols=37  Identities=24%  Similarity=0.477  Sum_probs=34.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||..++++++..++++...+..|.+.+..
T Consensus       440 ~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~  476 (686)
T PLN02636        440 CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLL  476 (686)
T ss_pred             HHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHH
Confidence            6899999999999999999999999999999888765

>PLN02312 acyl-CoA oxidase

Probab=93.87  E-value=0.037  Score=38.68  Aligned_cols=37  Identities=19%  Similarity=0.434  Sum_probs=33.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||..+.++++..+.++...+..|.+.+..
T Consensus       442 ~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~  478 (680)
T PLN02312        442 CREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLM  478 (680)
T ss_pred             HHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHH
Confidence            7899999999999999999999999999888887765

>PLN02526 acyl-coenzyme A oxidase

Probab=93.80  E-value=0.029  Score=36.68  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||.+++++++..++++......+...++.
T Consensus       353 a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~  389 (412)
T PLN02526        353 GRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINA  389 (412)
T ss_pred             HHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHH
Confidence            6899999999999999999999999998888766544

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=93.53  E-value=0.041  Score=38.23  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||..+.++++..+.++...+..|.+.+..
T Consensus       386 ~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~  422 (646)
T PTZ00460        386 CRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMY  422 (646)
T ss_pred             HHHHhCCccccccCcHHHHHHHhccceeecCcHHHHH
Confidence            6899999999999999999999999999888887654

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=93.37  E-value=0.061  Score=34.46  Aligned_cols=37  Identities=35%  Similarity=0.757  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||..+++.++..++++......+++.+..
T Consensus       328 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~  364 (372)
T cd01160         328 CVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMK  364 (372)
T ss_pred             HHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHH
Confidence            6789999999999999999999999988787776654

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=93.34  E-value=0.057  Score=35.16  Aligned_cols=37  Identities=46%  Similarity=0.926  Sum_probs=33.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||..+++.++.+++++......+.+..+.
T Consensus       357 a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~  393 (404)
T PLN02519        357 AIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRR  393 (404)
T ss_pred             HHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHH
Confidence            5789999999999999999999999999888877665

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=93.27  E-value=0.067  Score=34.53  Aligned_cols=37  Identities=22%  Similarity=0.491  Sum_probs=33.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||.+++++++.+++++......+.+....
T Consensus       332 ~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~  368 (380)
T PRK03354        332 AMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQI  368 (380)
T ss_pred             HHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHH
Confidence            6899999999999999999999999998888776654

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=93.25  E-value=0.064  Score=34.39  Aligned_cols=37  Identities=49%  Similarity=0.972  Sum_probs=33.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||..+++.++.++.++......+....+.
T Consensus       331 a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~  367 (376)
T cd01156         331 AIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRR  367 (376)
T ss_pred             HHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHH
Confidence            5789999999999999999999999999888877665

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=93.13  E-value=0.085  Score=34.34  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             cccccccccccCCC----hHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDY----PVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~----~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||++||++++    +..+.+..+|.+....+++.++.
T Consensus       345 ~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~  385 (395)
T TIGR03204       345 PYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQR  385 (395)
T ss_pred             cccccccccccccchhhhHHHHHHHhccccceeccHHHHHH
Confidence            35789999998764    58888999899988888887776

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=93.07  E-value=0.073  Score=34.33  Aligned_cols=37  Identities=27%  Similarity=0.475  Sum_probs=33.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||.++++.++..++++......+.+.+..
T Consensus       333 ~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~  369 (381)
T PRK12341        333 AIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMI  369 (381)
T ss_pred             HHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHH
Confidence            5789999999999999999999999999888887764

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=93.00  E-value=0.049  Score=35.01  Aligned_cols=45  Identities=13%  Similarity=0.115  Sum_probs=33.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCccc
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFN   49 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~   49 (87)
                      ++|+||+.||..++++++.+++++........   ..-.++.|.+...
T Consensus       329 a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~---~~~~~~~~~~~~~  373 (377)
T cd01163         329 LFEVGGASATAREHNLDRHWRNARTHTLHNPV---IYKERAVGDYALN  373 (377)
T ss_pred             HHHHhCchhhccccCCcchhhhhhhhhccCHH---HHHHHHhchhhcC
Confidence            68999999999999999999999987654443   3445566665443

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=92.83  E-value=0.049  Score=35.72  Aligned_cols=36  Identities=47%  Similarity=0.921  Sum_probs=32.6

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ   37 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~   37 (87)
                      +++++|+.||.+++++++.+++++......++..++
T Consensus       373 a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~  408 (418)
T cd01154         373 AMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQ  408 (418)
T ss_pred             HHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHH
Confidence            689999999999999999999999999988887755

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=92.78  E-value=0.074  Score=34.69  Aligned_cols=37  Identities=43%  Similarity=0.883  Sum_probs=32.6

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..+++.++..+.++......+.+....
T Consensus       361 a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~  397 (409)
T cd01161         361 AIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILR  397 (409)
T ss_pred             HHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHH
Confidence            6789999999999999999999999988888776554

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=91.64  E-value=0.11  Score=33.97  Aligned_cols=37  Identities=49%  Similarity=0.902  Sum_probs=33.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||.+++++++.+++++......+.+.++.
T Consensus       362 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~  398 (407)
T cd01153         362 AIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQA  398 (407)
T ss_pred             HHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHH
Confidence            5789999999999999999999999999888887553

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=91.19  E-value=0.34  Score=32.72  Aligned_cols=34  Identities=12%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccC
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNS   50 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~   50 (87)
                      |....++++|+++++...++. .++|++||.|++.
T Consensus       358 P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~  391 (477)
T TIGR02309       358 PDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT  391 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence            346789999999999999995 9999999999864

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=90.90  E-value=0.16  Score=32.79  Aligned_cols=37  Identities=27%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             cccccccccccCC--------ChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSD--------YPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~--------~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||..+        +++++..++++......+.+.++.
T Consensus       327 a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~  371 (380)
T cd01152         327 ALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQR  371 (380)
T ss_pred             HHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHH
Confidence            6789999999988        689999999999999888877665

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PLN02443 acyl-coenzyme A oxidase

Probab=90.47  E-value=0.16  Score=35.56  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |.|+|||.||..++++++..+.++...+..+.+.+..
T Consensus       395 ~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~  431 (664)
T PLN02443        395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLL  431 (664)
T ss_pred             HHHHccCccccccCcHHHHHhhhhcceeecCcHHHHH
Confidence            6799999999999999999999998888777776654

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=90.46  E-value=0.2  Score=32.19  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~   34 (87)
                      +++++|+.||..++++++..++++......+..
T Consensus       324 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~  356 (370)
T cd01159         324 LFHAAGGSALYTASPLQRIWRDIHAAAQHAALN  356 (370)
T ss_pred             HHHhcCchhcccCCcHHHHHHHHHHHhhhhccC
Confidence            578999999999999999999999888866665

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=90.01  E-value=0.28  Score=31.40  Aligned_cols=37  Identities=59%  Similarity=1.075  Sum_probs=32.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||.++.+.++..+.++......+...+..
T Consensus       328 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~  364 (373)
T cd01158         328 AVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQR  364 (373)
T ss_pred             HHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHH
Confidence            5789999999999999999999999999888876554

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=89.89  E-value=0.25  Score=30.92  Aligned_cols=37  Identities=49%  Similarity=0.912  Sum_probs=31.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||..+.++++.++.++.+....+......
T Consensus       286 ~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~  322 (327)
T cd00567         286 AMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQR  322 (327)
T ss_pred             HHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHH
Confidence            5789999999999999999999999888777765443

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=88.75  E-value=0.12  Score=35.74  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |.|+|||.||..+.+++...+.++...+..|.+.+..
T Consensus       399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~  435 (610)
T cd01150         399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLL  435 (610)
T ss_pred             HHHHhcCccchhhcChHHHHhhccceeeeecchHhHH
Confidence            6789999999999999999999999888888776654

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>KOG0137|consensus

Probab=88.45  E-value=0.2  Score=34.49  Aligned_cols=36  Identities=39%  Similarity=0.754  Sum_probs=30.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ   37 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~   37 (87)
                      ++|++|+.||+.+.+.++..++++++.+..++..+.
T Consensus       415 ~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvL  450 (634)
T KOG0137|consen  415 AIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVL  450 (634)
T ss_pred             hhheeccccccccCchHHHhhhhheeeeecCchhHH
Confidence            579999999999999999999999988766655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		4e-16
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		4e-16
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		1e-15
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-15
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-14
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		3e-12
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		8e-10
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		3e-09
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		1e-08
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		4e-08
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		1e-08
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		4e-08
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		7e-08
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		1e-07
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		2e-07
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		6e-07
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		2e-06
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		3e-06
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		2e-05
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		1e-04
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		1e-04

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R  I R
Sbjct: 348 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 393

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R  I R
Sbjct: 338 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 383

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R  I++
Sbjct: 373 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 418

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R  I++
Sbjct: 348 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 393

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R  I++
Sbjct: 348 VQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 38/44 (86%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + +FGG G+  D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 349 VQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + VFGG G+  DY VE+ MR+AKI QI+EGT QIQRL+++R +
Sbjct: 343 VQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGL 385

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I + GG G+  ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 334 IQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 37/47 (78%), Gaps = 3/47 (6%)
Query: 6   FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52
           FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++   G  FN+D+
Sbjct: 350 FGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI---GRAFNADF 393

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 34/42 (80%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81
           I  FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++ RA
Sbjct: 347 IQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRA 388

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + V GG G++ DY VE+  RDAK+ +IYEGT++IQRL+++R +
Sbjct: 328 VQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIAREL 370

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 16  PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
           P  K    AK+      TA   + I + GG G+ ++ P E+  RDA+I +IYEGT++IQR
Sbjct: 316 PFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQR 375
Query: 76  LIVS 79
           L+++
Sbjct: 376 LVIA 379

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++   A++
Sbjct: 339 VQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS 79
           AK+      TA   + I + GG G+ ++ P E+  RDA+I +IYEGT++IQRL+++
Sbjct: 320 AKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 375

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           AK++            I + GG G+  DYPVE+  RDA++ +I EGT++I +L+++R ++
Sbjct: 325 AKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL 384
Query: 84  E 84
           E
Sbjct: 385 E 385

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 42/61 (68%)
Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           AK++   E  A   + + + GG G+  DY V++ +RD++++QI EG+ ++ R+++SR+++
Sbjct: 332 AKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLL 391
Query: 84  E 84
           +
Sbjct: 392 Q 392

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GG G++ +YP+E+  RDA+I +I+EGT +I RL++   ++ R
Sbjct: 370 VQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%)
Query: 16  PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
           P  K    AK Y          + I   GG G+  DYPVEK  RDAKI  IYEG + IQ 
Sbjct: 334 PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQL 393
Query: 76  LIVSRAI 82
             +++ I
Sbjct: 394 NTIAKHI 400

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + + GG GF ++Y +E+  RD++I +I+EGT +I RLIV    + +
Sbjct: 380 VQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTFLRK 425

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12  NSDYPVEKLMRDAKIYQIYEGTAQ---IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYE 68
           N D        +A I +I+   A        I + GG GF  +  VE+++RD +I++I+E
Sbjct: 335 NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFE 394
Query: 69  GTAQIQRLIVS 79
           GT  I RL V+
Sbjct: 395 GTNDILRLFVA 405

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12  NSDYPVEKLMRDAKIYQIYEGTAQ---IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYE 68
           N D        +A I +I+   A        I + GG GF  +  VE+++RD +I++I+E
Sbjct: 355 NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFE 414
Query: 69  GTAQIQRLIVS 79
           GT  I RL V+
Sbjct: 415 GTNDILRLFVA 425

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-24
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	1e-21
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	2e-23
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	5e-21
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	1e-22
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	2e-20
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	4e-22
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	7e-20
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	1e-21
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	3e-19
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	8e-21
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-18
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	8e-21
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	1e-18
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	1e-20
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	3e-18
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-20
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	3e-18
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	2e-20
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	5e-18
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	2e-20
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	4e-18
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	3e-20
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-18
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	4e-20
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	2e-18
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	4e-20
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	7e-18
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	9e-20
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	1e-17
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	3e-19
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	3e-19
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	2e-17
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	7e-19
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	4e-17
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	9e-19
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	3e-18
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-18
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	5e-17
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	4e-16
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	9e-14
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	7e-16
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	1e-13
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	1e-15
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	2e-13
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	1e-15
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	8e-14
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	2e-15
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	3e-13
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	2e-15
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	3e-13
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	2e-15
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	1e-13
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-15
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	1e-13
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	6e-15
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-12
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	3e-10
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	3e-09
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	3e-08
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	5e-06
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	8e-08
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	5e-05

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 93.3 bits (233), Expect = 2e-24
 Identities = 33/44 (75%), Positives = 40/44 (90%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R  I++
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 85.6 bits (213), Expect = 1e-21
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIV 386

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 90.2 bits (225), Expect = 2e-23
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + GG G+  ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 336 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 83.7 bits (208), Expect = 5e-21
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  ++PVEKL+RD K+ QIYEGT +IQRLI+
Sbjct: 336 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLII 372

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 88.3 bits (220), Expect = 1e-22
 Identities = 27/42 (64%), Positives = 37/42 (88%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           +FGG G+  D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGG G+  D+PVE++MRDAKI QIYEGT QIQR+++
Sbjct: 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVM 387

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 86.4 bits (215), Expect = 4e-22
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           V    G    + VE+  RDAK+ +I EG++++ R+++++  +
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 80.6 bits (200), Expect = 7e-20
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           V    G    + VE+  RDAK+ +I EG++++ R+++
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVML 357

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIVSRAIIER 85
             G + ++   P   L+  A +  I++G    I+R  + + +++ 
Sbjct: 373 AVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIV 41
             G + ++   P   L+  A +  I++G    I+R  +
Sbjct: 373 AVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHL 410

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 83.3 bits (207), Expect = 8e-21
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           VFGG G+  DY VE+ MR+AKI QI+EGT QIQRL+++R + 
Sbjct: 345 VFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 76.8 bits (190), Expect = 1e-18
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           VFGG G+  DY VE+ MR+AKI QI+EGT QIQRL++
Sbjct: 345 VFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVI 381

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 83.4 bits (207), Expect = 8e-21
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + G  G++++YPV +  RDA  Y + EG+A I ++I++   +
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 77.2 bits (191), Expect = 1e-18
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + G  G++++YPV +  RDA  Y + EG+A I ++I+
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMII 377

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 82.5 bits (205), Expect = 1e-20
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++   A++
Sbjct: 341 IFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 76.4 bits (189), Expect = 3e-18
 Identities = 20/37 (54%), Positives = 29/37 (78%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ 
Sbjct: 341 IFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVT 377

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 82.1 bits (204), Expect = 2e-20
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           V GG G++ DY VE+  RDAK+ +IYEGT++IQRL+++R + 
Sbjct: 330 VLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELY 371

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 76.0 bits (188), Expect = 3e-18
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           V GG G++ DY VE+  RDAK+ +IYEGT++IQRL++
Sbjct: 330 VLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVI 366

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 82.2 bits (204), Expect = 2e-20
 Identities = 15/43 (34%), Positives = 34/43 (79%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + GG G+  DY V++ +RD++++QI EG+ ++ R+++SR++++
Sbjct: 350 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 13/37 (35%), Positives = 28/37 (75%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  DY V++ +RD++++QI EG+ ++ R+++
Sbjct: 350 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILI 386

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 82.2 bits (204), Expect = 2e-20
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + GG G+ ++ P E+  RDA+I +IYEGT++IQRL+++  ++  
Sbjct: 338 ILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRS 381

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 75.6 bits (187), Expect = 4e-18
 Identities = 18/37 (48%), Positives = 29/37 (78%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+ ++ P E+  RDA+I +IYEGT++IQRL++
Sbjct: 338 ILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 374

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 81.8 bits (203), Expect = 3e-20
 Identities = 19/43 (44%), Positives = 33/43 (76%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
            FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++ RA   
Sbjct: 349 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNA 391

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 77.2 bits (191), Expect = 1e-18
 Identities = 21/48 (43%), Positives = 37/48 (77%), Gaps = 3/48 (6%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52
            FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++   G  FN+D+
Sbjct: 349 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI---GRAFNADF 393

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 81.6 bits (202), Expect = 4e-20
 Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIVSRAIIERN 86
             G   +  D    +L+ +   Y +++G    ++R  + R +   +
Sbjct: 376 AVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALED 421

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGT------AQIQRLIV 41
             G   +  D    +L+ +   Y +++G        Q+QR++ 
Sbjct: 376 AVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 418

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 81.4 bits (202), Expect = 4e-20
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + GG G+  DYPVE+  RDA++ +I EGT++I +L+++R ++
Sbjct: 343 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL 384

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 74.8 bits (185), Expect = 7e-18
 Identities = 17/37 (45%), Positives = 28/37 (75%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  DYPVE+  RDA++ +I EGT++I +L++
Sbjct: 343 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVI 379

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score = 80.3 bits (199), Expect = 9e-20
 Identities = 21/42 (50%), Positives = 26/42 (61%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
             GG G+  DYPVEK  RDAKI  IYEG + IQ   +++ I 
Sbjct: 360 WMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHID 401

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score = 74.5 bits (184), Expect = 1e-17
 Identities = 20/37 (54%), Positives = 23/37 (62%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
             GG G+  DYPVEK  RDAKI  IYEG + IQ   +
Sbjct: 360 WMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTI 396

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 79.3 bits (196), Expect = 3e-19
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG---GNGFNSDYPVEKLMRDA 61
           + GG  + + +P+ +L+RD +  +  +  A +  +  +     G   +++Y      R  
Sbjct: 361 LVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGIERDNNYMSTWAKRSG 420

Query: 62  KIYQIYEGTAQIQRLIVSR 80
              +  +     +    SR
Sbjct: 421 GNGKSADAAGPRRPTPTSR 439

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 79.3 bits (196), Expect = 3e-19
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + GG G++ +YP+E+  RDA+I +I+EGT +I RL++   ++ R
Sbjct: 372 IHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 17/38 (44%), Positives = 29/38 (76%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
           + GG G++ +YP+E+  RDA+I +I+EGT +I RL++ 
Sbjct: 372 IHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIP 409

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 78.2 bits (193), Expect = 7e-19
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
           + GG GF ++Y +E++ RD++I +I+EGT +I RLIV    + +
Sbjct: 382 IHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRK 425

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 73.2 bits (180), Expect = 4e-17
 Identities = 18/38 (47%), Positives = 29/38 (76%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
           + GG GF ++Y +E++ RD++I +I+EGT +I RLIV 
Sbjct: 382 IHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVP 419

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 77.7 bits (192), Expect = 9e-19
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG 44
           + GG  + + +P+ +L RD +     +  + +  +  + G
Sbjct: 350 LVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSG 389

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 76.1 bits (188), Expect = 3e-18
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 78
           + GG  + + +P+ +L RD +     +  + +  +  
Sbjct: 350 LVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDY 386

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + GG GF  +  VE+++RD +I++I+EGT  I RL V+    
Sbjct: 388 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGC 429

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 72.8 bits (179), Expect = 5e-17
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG GF  +  VE+++RD +I++I+EGT  I RL V
Sbjct: 388 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 424

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GGNG + ++ V + + + ++   YEGT  I  LI+ RA 
Sbjct: 349 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQ 389

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 63.3 bits (155), Expect = 9e-14
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GGNG + ++ V + + + ++   YEGT  I  LI+
Sbjct: 349 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALIL 385

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 69.6 bits (171), Expect = 7e-16
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GGNG  +D+ V K   D +    YEGT  I  L+  R +
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GGNG  +D+ V K   D +    YEGT  I  L+ 
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVT 418

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 68.8 bits (169), Expect = 1e-15
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GG+G   +Y   +   + +    YEGT+++  L + +A+
Sbjct: 351 LLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG+G   +Y   +   + +    YEGT+++  L +
Sbjct: 351 LLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSI 387

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 68.7 bits (169), Expect = 1e-15
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           +FGG G+ ++  VE+  RD +I  I  GT +I   + ++ +
Sbjct: 359 LFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 63.7 bits (156), Expect = 8e-14
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGG G+ ++  VE+  RD +I  I  GT +I   + 
Sbjct: 359 LFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLA 395

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           V G +G   +YPV +   + +    YEGT+++  LI+ +A+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           V G +G   +YPV +   + +    YEGT+++  LI+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLII 392

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GG+G   +Y   + M + +    YEGT  +  L++ R I
Sbjct: 339 ILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREI 379

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 61.8 bits (151), Expect = 3e-13
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG+G   +Y   + M + +    YEGT  +  L++
Sbjct: 339 ILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVL 375

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GG G+  +Y + +  RD  +  IY GT ++ + I++R +
Sbjct: 343 LHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 62.9 bits (154), Expect = 1e-13
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  +Y + +  RD  +  IY GT ++ + I+
Sbjct: 343 LHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTII 379

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           +FGG G+  +  +E+  RD +I  I  GT +I   ++++ I
Sbjct: 361 IFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 62.9 bits (154), Expect = 1e-13
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           +FGG G+  +  +E+  RD +I  I  GT +I   ++
Sbjct: 361 IFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVI 397

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 66.8 bits (164), Expect = 6e-15
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           + GGNG + +Y V +   + +    YEGT  I  LI+ RAI
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 382

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GGNG + +Y V +   + +    YEGT  I  LI+
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 378

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           V GG G+  +  + +L R+  +  I+EG+  I  L V R +
Sbjct: 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVL 439

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
           V GG G+  +  + +L R+  +  I+EG+  I  L V+
Sbjct: 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVL 436

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 36  IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I+    + GG+G+     + +L         YEG   + +L V+R ++
Sbjct: 392 IEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLM 439

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
           + GG+G+     + +L         YEG   + +L V 
Sbjct: 398 LCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVA 435

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 36  IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I+   +  GG+G++    +  +         +EG   +  L  +R ++
Sbjct: 389 IEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLM 436

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 6   FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
            GG+G++    +  +         +EG   +  L  
Sbjct: 396 CGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQT 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	99.69
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	99.67
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	99.67
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	99.66
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	99.66
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	99.66
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.65
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	99.65
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	99.65
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	99.64
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	99.64
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.64
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	99.64
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	99.64
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	99.64
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	99.63
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	99.62
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	99.62
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	99.62
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	99.61
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	99.61
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	99.59
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	99.58
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	99.58
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	99.57
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.57
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	99.57
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	99.57
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	99.55
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	99.55
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	99.51
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.5
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	99.5
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	99.5
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.46
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	99.46
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	99.41
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	98.46
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	98.29
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	96.62
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	96.25
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	95.29
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	95.28
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	95.22
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	95.2
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	95.18
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	95.16
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	95.15
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	95.13
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	95.05
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	95.01
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	95.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	94.96
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	94.91
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	94.89
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	94.88
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	94.83
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	94.83
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	94.76
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	94.72
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	94.69
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	94.68
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	94.62
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	94.61
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	94.56
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	94.54
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	94.54
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	94.31
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	94.23
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	94.19
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	93.94
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	93.66
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	93.37
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	93.05
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	92.39
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	90.65
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	90.45
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	86.07

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=99.69  E-value=5.8e-17  Score=102.72  Aligned_cols=72  Identities=38%  Similarity=0.494  Sum_probs=67.6

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      .+....++++|+++++.+.++++.++|++||.||++++|++++|||++...+++|++|+|+++|++.++++|
T Consensus       333 ~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~~  404 (404)
T 2jif_A          333 KPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY  404 (404)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhcC
Confidence            344567899999999999999999999999999999999999999999999999999999999999998875

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=99.67  E-value=1.4e-16  Score=100.66  Aligned_cols=73  Identities=48%  Similarity=0.694  Sum_probs=68.5

Q ss_pred             CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +.+....++++|.++++.+.++++.++|++||.||+++++++++|||++...+++|++|+|+++|++.++++|
T Consensus       322 g~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~  394 (396)
T 1egd_A          322 GRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY  394 (396)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence            3344567899999999999999999999999999999999999999999999999999999999999999876

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=99.67  E-value=1.6e-16  Score=100.87  Aligned_cols=72  Identities=18%  Similarity=0.366  Sum_probs=68.7

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS   87 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~   87 (87)
                      +....++++|+++++.+.++++.++|++||.||++++|++++|||++..++++|++|+|+++|++.+|++|.
T Consensus       342 ~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~~~  413 (415)
T 4hr3_A          342 GALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYA  413 (415)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHHhh
Confidence            456788999999999999999999999999999999999999999999999999999999999999999874

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.66  E-value=1.7e-16  Score=100.22  Aligned_cols=72  Identities=32%  Similarity=0.519  Sum_probs=67.3

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      .+....++++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+|+++|++.+++.|
T Consensus       322 ~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~  393 (394)
T 1ivh_A          322 HCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF  393 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence            344667899999999999999999999999999999999999999999999999999999999999999876

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=99.66  E-value=2.4e-16  Score=104.12  Aligned_cols=69  Identities=28%  Similarity=0.512  Sum_probs=66.0

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ...++++|+++++.+..+++.++|++||.||++++|++++|||++..+|++|++|||+++|++.+++++
T Consensus       358 ~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~~  426 (597)
T 3owa_A          358 AIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKA  426 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999864

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=99.66  E-value=1.3e-16  Score=100.72  Aligned_cols=68  Identities=41%  Similarity=0.710  Sum_probs=64.5

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .....+++|+++++.+.++++.++|++||.||++++|++++|||++..+|++|++|+|+++|++.+|+
T Consensus       326 ~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~  393 (393)
T 3pfd_A          326 LGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR  393 (393)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999999999999999999999999999999999999999875

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.5e-16  Score=98.75  Aligned_cols=71  Identities=34%  Similarity=0.594  Sum_probs=66.3

Q ss_pred             CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +.+....++++|.++++.+.++++.++|++||.||++++|++++|||++...+++|++|+|+++|++.+++
T Consensus       302 g~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~  372 (372)
T 2dvl_A          302 GERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR  372 (372)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence            33456789999999999999999999999999999999999999999999999999999999999998874

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=99.65  E-value=3.9e-16  Score=98.47  Aligned_cols=71  Identities=35%  Similarity=0.567  Sum_probs=67.3

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +....++++|+++++.+.++++.++|++||.||++++|++++|||++..++++|++|+++++|++.+++.|
T Consensus       312 ~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~  382 (391)
T 2vig_A          312 PFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSY  382 (391)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhc
Confidence            34667999999999999999999999999999999999999999999999999999999999999998865

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.65  E-value=4.1e-16  Score=98.48  Aligned_cols=70  Identities=29%  Similarity=0.554  Sum_probs=66.3

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      +....++++|+++++.+.++++.++|++||.||++++|++++|||++...+++|++|+|+++|++.+|++
T Consensus       324 ~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~  393 (393)
T 1rx0_A          324 DAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE  393 (393)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhcC
Confidence            3467889999999999999999999999999999999999999999999999999999999999998863

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=99.64  E-value=4.8e-16  Score=98.28  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=67.9

Q ss_pred             CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .+.+....++++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+++++|++.+++.
T Consensus       322 ~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~  394 (399)
T 3swo_A          322 AEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGK  394 (399)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCc
Confidence            3344567889999999999999999999999999999999999999999999999999999999999999874

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=99.64  E-value=1.9e-16  Score=99.67  Aligned_cols=72  Identities=39%  Similarity=0.621  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .+.+.....+++|.++++.+.++++.++|++||.||++++|++++|||++..+|++|++|+|+++|++.+++
T Consensus       316 ~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~  387 (387)
T 3nf4_A          316 QGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR  387 (387)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence            344556788999999999999999999999999999999999999999999999999999999999997753

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=99.64  E-value=5.3e-16  Score=97.71  Aligned_cols=70  Identities=33%  Similarity=0.616  Sum_probs=66.5

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      +....++++|+++++.+.++++.++|++||.||++++|++++|||++..++++|++|++++.|++.+++.
T Consensus       317 ~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~  386 (387)
T 2d29_A          317 PFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA  386 (387)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence            4467899999999999999999999999999999999999999999999999999999999999999874

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=99.64  E-value=3.9e-16  Score=98.82  Aligned_cols=72  Identities=21%  Similarity=0.362  Sum_probs=67.3

Q ss_pred             CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      +.+....++++|+++++.+.++++.++|++||.||++++|++++|||++..++++|++|+|+++|++.+++.
T Consensus       328 ~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl  399 (403)
T 3sf6_A          328 GELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGV  399 (403)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCc
Confidence            334567889999999999999999999999999999999999999999999999999999999999999864

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=99.64  E-value=3.6e-16  Score=98.22  Aligned_cols=69  Identities=42%  Similarity=0.670  Sum_probs=65.6

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +....++++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+|+++|++.+|+
T Consensus       310 ~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~  378 (379)
T 1ukw_A          310 PHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA  378 (379)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence            446789999999999999999999999999999999999999999999999999999999999999875

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=99.64  E-value=3.2e-16  Score=98.16  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .+....++++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+++++|++.+++
T Consensus       294 ~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg  363 (366)
T 1r2j_A          294 PEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA  363 (366)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence            3446689999999999999999999999999999999999999999999999999999999999999876

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=97.32  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=67.1

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +....++++|+++++.+.++++.++|++||.||+++++++++|||++...+++|++++++++|++.+|+.|
T Consensus       350 ~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~  420 (428)
T 2wbi_A          350 GAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQ  420 (428)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999998875

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=99.62  E-value=4.1e-16  Score=98.49  Aligned_cols=71  Identities=21%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +.+.....+++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+|+++|++.+++
T Consensus       321 ~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llg  391 (396)
T 3ii9_A          321 GTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTG  391 (396)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHS
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhC
Confidence            34456688999999999999999999999999999999999999999999999999999999999999986

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=99.62  E-value=7e-16  Score=97.01  Aligned_cols=69  Identities=35%  Similarity=0.554  Sum_probs=65.4

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +....++++|.++++.+.++++.++|++||.||++++|++++|||++...+++|++|++++.|++.+++
T Consensus       315 ~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~  383 (383)
T 1buc_A          315 PFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR  383 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHhC
Confidence            456788999999999999999999999999999999999999999999999999999999999998864

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=99.62  E-value=9.4e-16  Score=98.10  Aligned_cols=70  Identities=23%  Similarity=0.259  Sum_probs=65.9

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      +.....+++|+++++.+..+++.++|++||.||+++++++++|||++...+++|++|+++++|++.+++.
T Consensus       356 ~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llgl  425 (436)
T 2ix5_A          356 MTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGI  425 (436)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhCC
Confidence            4456789999999999999999999999999999999999999999999999999999999999998763

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=99.61  E-value=1e-15  Score=96.89  Aligned_cols=70  Identities=24%  Similarity=0.393  Sum_probs=65.0

Q ss_pred             CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      .+.+....++++|.++++.+.++++.++|++||.||+++++++++|||++..+|++|++|+|+++|++.+
T Consensus       332 ~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l  401 (403)
T 3r7k_A          332 AGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI  401 (403)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence            3344567799999999999999999999999999999999999999999999999999999999999875

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=99.61  E-value=1.4e-15  Score=95.77  Aligned_cols=70  Identities=20%  Similarity=0.320  Sum_probs=66.0

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .+.....+++|.++++.+.++++.++|++||.||++++|++++|||++..++++|++|+++++|++.+++
T Consensus       312 ~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg  381 (385)
T 2eba_A          312 KLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG  381 (385)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence            3446678899999999999999999999999999999999999999999999999999999999999876

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=99.59  E-value=2.4e-15  Score=94.89  Aligned_cols=69  Identities=25%  Similarity=0.352  Sum_probs=65.3

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      +....++++|.++++.+.++++.++|++||.||++++|++++|||++...+++|+++++++.|++.+++
T Consensus       316 ~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg  384 (392)
T 1siq_A          316 AAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG  384 (392)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence            345678999999999999999999999999999999999999999999999999999999999999875

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=99.58  E-value=3.8e-15  Score=94.30  Aligned_cols=65  Identities=25%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      ...++++|+++++.+.++++.++|++||.||+++++++++|||++..++++|++|+|+++|++.+
T Consensus       335 ~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l  399 (403)
T 3p4t_A          335 IAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL  399 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence            67889999999999999999999999999999999999999999999999999999999999987

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=99.58  E-value=3.7e-15  Score=93.82  Aligned_cols=68  Identities=21%  Similarity=0.390  Sum_probs=64.0

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      .+....++++|.++++.+.++++.++|++||.||++++|++++|||++...+++|++|+|+++|++.+
T Consensus       316 ~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l  383 (385)
T 2pg0_A          316 KQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL  383 (385)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999864

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=99.57  E-value=5.5e-15  Score=93.29  Aligned_cols=68  Identities=24%  Similarity=0.381  Sum_probs=63.7

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHH-HHH
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS-RAI   82 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia-~~~   82 (87)
                      .+....++++|+++++.+.++++.++|++||.||++++|++++|||++..+|++|++|+|+++|+ +.+
T Consensus       314 ~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l  382 (397)
T 3mpi_A          314 LNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL  382 (397)
T ss_dssp             TEEHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence            44567889999999999999999999999999999999999999999999999999999999999 554

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.57  E-value=1.5e-14  Score=94.73  Aligned_cols=68  Identities=24%  Similarity=0.386  Sum_probs=64.1

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++++.+..++..++|++||.||+++++++++|||++...|++||+|||++.|++.+++.
T Consensus       375 ~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~  442 (541)
T 3djl_A          375 RLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ  442 (541)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhC
Confidence            35678999999999999999999999999999999999999999999999999999999999988653

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=99.57  E-value=1.8e-15  Score=99.56  Aligned_cols=68  Identities=28%  Similarity=0.523  Sum_probs=64.1

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++++.+..+++.++|+|||.||++++|++++|||++..+|++|++++|+++|++.+++.
T Consensus       348 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~  415 (577)
T 2z1q_A          348 AVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR  415 (577)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999887654

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=99.57  E-value=7.7e-15  Score=92.42  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHH-hhhCHHHHHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQ-IYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~-i~~g~~~~~~~~ia~~~l~   84 (87)
                      ...++++|+++++.+.++++.++|++||.||++++|++++|||++..+ +++|+++++++.|++.+|+
T Consensus       326 ~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg  393 (395)
T 3mxl_A          326 MTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG  393 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence            356788999999999999999999999999999999999999999999 9999999999999999886

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=99.55  E-value=1.8e-14  Score=90.77  Aligned_cols=68  Identities=12%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhC-HHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEG-TAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g-~~~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++++.+.++++.++|++||.||++++|++++|||++...+++| ++|++++.|++.+++.
T Consensus       319 ~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg~  387 (394)
T 2rfq_A          319 RLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGL  387 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999999999999999999999 9999999999998863

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=99.55  E-value=1e-14  Score=93.07  Aligned_cols=67  Identities=18%  Similarity=0.339  Sum_probs=64.0

Q ss_pred             HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHH-HHHHHHHHHHHHHh
Q psy10337         19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAIIER   85 (87)
Q Consensus        19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~ia~~~l~~   85 (87)
                      ..++++|+++++.+.++++.++|++||.||++++|++++|||++..+|++|++ ++++.+|++.++++
T Consensus       350 ~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r~ll~~  417 (438)
T 3mkh_A          350 ELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP  417 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHHHHHhc
Confidence            34778999999999999999999999999999999999999999999999999 99999999999986

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=99.51  E-value=2.2e-14  Score=91.23  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=64.8

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHH-HHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++++.+.++++.++|++||.||+++++++++|||++...+++|++ |++++.|++.+++.
T Consensus       347 ~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~  415 (422)
T 2jbr_A          347 LAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMGM  415 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhCC
Confidence            457899999999999999999999999999999999999999999999999999 99999999998864

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.50  E-value=6.1e-14  Score=93.58  Aligned_cols=70  Identities=17%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++++|.++++.+.++++.++|++||.||+++++++++|||++...+++|+++++++.+++.+++.+
T Consensus       373 ~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~  442 (659)
T 1w07_A          373 AHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTV  442 (659)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999999999865

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=99.50  E-value=2.6e-14  Score=90.67  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhC-HHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEG-TAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g-~~~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++++.+.++++.++|++||.||++++|++++|||++...+++| ++|++++.|++.+|+.
T Consensus       334 ~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~~~lg~  402 (414)
T 2or0_A          334 RAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASALTQLGG  402 (414)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999999999999999999999 9999999999998763

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=99.50  E-value=4.4e-14  Score=93.54  Aligned_cols=66  Identities=30%  Similarity=0.454  Sum_probs=61.9

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI   82 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~   82 (87)
                      ....++++|.++++.+..++..++|++||.||+++++++++|||++...|++|++++++++|+...
T Consensus       363 ~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~g  428 (607)
T 2uxw_A          363 FQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQG  428 (607)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHHHHHHHhcccceeeCChHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999996554

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.46  E-value=9.7e-14  Score=92.65  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++++|.++++.+.++++.|++++||.||+++++++++|||++...+++|+++++++++++.+++.|
T Consensus       370 ~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~  439 (661)
T 2ddh_A          370 LHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIY  439 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999998865

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=99.46  E-value=1.8e-13  Score=87.42  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=63.8

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHH-hhhCHHHHHHHHHHHHHHHh
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQ-IYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~-i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ...++++|+++.+.+.++++.++|++||.||+++++++++|||++..+ +++|+++++++.|++.+|+.
T Consensus       337 ~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg~  405 (439)
T 3m9v_A          337 MRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI  405 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhCC
Confidence            456778899999999999999999999999999999999999999999 99999999999999998864

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=99.41  E-value=2.3e-13  Score=86.95  Aligned_cols=66  Identities=15%  Similarity=0.346  Sum_probs=61.3

Q ss_pred             HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHH-HHHHHHHHHHHH
Q psy10337         18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAII   83 (87)
Q Consensus        18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~ia~~~l   83 (87)
                      ...++++|+++++.+.++++.++|++||.||++++|++++|||++...+++|++ +++++.|++.+.
T Consensus       352 ~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~~l~  418 (439)
T 2c12_A          352 LEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA  418 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHHHHh
Confidence            346889999999999999999999999999999999999999999999999988 799999987553

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=98.46  E-value=2.5e-07  Score=60.12  Aligned_cols=64  Identities=13%  Similarity=-0.006  Sum_probs=53.8

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHh------hhCHHHHHHHHHHHHH
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQI------YEGTAQIQRLIVSRAI   82 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i------~~g~~~~~~~~ia~~~   82 (87)
                      +....++++|+++++.+.++++.++|++||.+++  +|+++.| +.+..++      ..|+++++|..|++.+
T Consensus       353 ~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~  422 (481)
T 2yyk_A          353 PDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSEKDF-KGPLGPFLEKFLQGAALEAKERVALFRLA  422 (481)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCHHHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccHHHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3356899999999999999999999999998777  8888888 8855442      3599999999999754

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=98.29  E-value=3.3e-07  Score=59.70  Aligned_cols=43  Identities=14%  Similarity=-0.045  Sum_probs=37.6

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhh
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDA   61 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~   61 (87)
                      ....++++|+++++...++++.++|++||.|++  +|+++.|||.
T Consensus       362 ~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~er~~rd~  404 (490)
T 1u8v_A          362 DLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSE  404 (490)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH--CCCHHHHTCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc--ChHHHHHhCc
Confidence            356899999999999999999999999999998  6666777766

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=96.62  E-value=0.0025  Score=42.02  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=31.3

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccC
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNS   50 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~   50 (87)
                      |-...++++|.++++...+++..++|++||.|++.
T Consensus       358 P~~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~  392 (517)
T 4g5e_A          358 PNILIYDFGRALYLENFSQMIYELVDLSGRSALIF  392 (517)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence            34567899999999999999999999999999983

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=96.25  E-value=0.0051  Score=40.54  Aligned_cols=36  Identities=8%  Similarity=0.067  Sum_probs=32.0

Q ss_pred             hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC
Q psy10337         16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD   51 (87)
Q Consensus        16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~   51 (87)
                      +....++++|+++++...++++.++|++||.+++.+
T Consensus       357 p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~P  392 (515)
T 3hwc_A          357 PNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIP  392 (515)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCC
Confidence            446779999999999999999999999999998743

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=95.29  E-value=0.0064  Score=40.66  Aligned_cols=38  Identities=42%  Similarity=0.882  Sum_probs=34.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++++|......+++.++..
T Consensus       379 a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~  416 (597)
T 3owa_A          379 GVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRL  416 (597)
T ss_dssp             HHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHH
T ss_pred             HHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHH
Confidence            67999999999999999999999999999888766553

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=95.28  E-value=0.0057  Score=38.41  Aligned_cols=38  Identities=63%  Similarity=1.018  Sum_probs=33.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.+|......+++.++..
T Consensus       342 a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~  379 (387)
T 3nf4_A          342 AVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRL  379 (387)
T ss_dssp             HHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHH
Confidence            57999999999999999999999999998888776654

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=95.22  E-value=0.0067  Score=38.23  Aligned_cols=38  Identities=63%  Similarity=1.097  Sum_probs=33.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.+|......+++.++..
T Consensus       348 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~  385 (393)
T 3pfd_A          348 AVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRV  385 (393)
T ss_dssp             HHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHH
Confidence            57999999999999999999999999998888776653

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=95.20  E-value=0.0072  Score=38.32  Aligned_cols=38  Identities=53%  Similarity=0.809  Sum_probs=33.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++..+.+|......+++.++..
T Consensus       357 a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~  394 (404)
T 2jif_A          357 CIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLN  394 (404)
T ss_dssp             HHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHH
T ss_pred             HHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHH
Confidence            67999999999999999999999999998888766653

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=95.18  E-value=0.0083  Score=39.86  Aligned_cols=39  Identities=44%  Similarity=0.932  Sum_probs=35.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI   40 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~   40 (87)
                      ++|+||+.||..++++++.++.++......+++.++..+
T Consensus       369 a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~  407 (577)
T 2z1q_A          369 GVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLL  407 (577)
T ss_dssp             HHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHH
T ss_pred             HHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHH
Confidence            679999999999999999999999999999998766544

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=95.16  E-value=0.0073  Score=37.86  Aligned_cols=38  Identities=55%  Similarity=0.986  Sum_probs=33.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.++.+....+++.++..
T Consensus       333 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~  370 (379)
T 1ukw_A          333 AIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRL  370 (379)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHH
T ss_pred             HHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHH
Confidence            57999999999999999999999999998888766543

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=95.15  E-value=0.01  Score=37.29  Aligned_cols=38  Identities=26%  Similarity=0.611  Sum_probs=33.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.++......+.+.++..
T Consensus       340 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~  377 (385)
T 2pg0_A          340 AMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKT  377 (385)
T ss_dssp             HHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHH
T ss_pred             HHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHH
Confidence            57999999999999999999999999998887665543

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=95.13  E-value=0.007  Score=38.31  Aligned_cols=38  Identities=32%  Similarity=0.544  Sum_probs=33.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.+|......+++.++..
T Consensus       358 a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~  395 (403)
T 3r7k_A          358 AVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNE  395 (403)
T ss_dssp             HHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHH
T ss_pred             HHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHH
Confidence            57999999999999999999999999998888776653

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=95.05  E-value=0.0085  Score=37.42  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+....+.
T Consensus       318 a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~  354 (366)
T 1r2j_A          318 AAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCR  354 (366)
T ss_dssp             HHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHH
T ss_pred             HHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHH
Confidence            6799999999999999999999999998888766554

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=95.01  E-value=0.0093  Score=37.66  Aligned_cols=37  Identities=22%  Similarity=0.470  Sum_probs=32.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+.+.++.
T Consensus       348 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~  384 (399)
T 3swo_A          348 CRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHL  384 (399)
T ss_dssp             HHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHH
T ss_pred             HHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHH
Confidence            5799999999999999999999999998888776654

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=95.00  E-value=0.0078  Score=37.97  Aligned_cols=37  Identities=35%  Similarity=0.739  Sum_probs=32.6

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.+|......+++.++.
T Consensus       347 a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~  383 (393)
T 1rx0_A          347 ALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMR  383 (393)
T ss_dssp             HHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHH
T ss_pred             HHHhcCCeeecCCChHHHHHHhccCceecCChHHHHH
Confidence            6799999999999999999999999988887776554

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=94.96  E-value=0.0079  Score=37.59  Aligned_cols=38  Identities=55%  Similarity=0.962  Sum_probs=33.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++.++.+|......+++.++..
T Consensus       327 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~  364 (372)
T 2dvl_A          327 AVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRL  364 (372)
T ss_dssp             HHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHH
T ss_pred             HHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHH
Confidence            57999999999999999999999999988888766543

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=94.91  E-value=0.0093  Score=37.81  Aligned_cols=37  Identities=22%  Similarity=0.612  Sum_probs=33.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+.+..+.
T Consensus       365 a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~  401 (415)
T 4hr3_A          365 AIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHR  401 (415)
T ss_dssp             HHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHH
T ss_pred             HHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHH
Confidence            6799999999999999999999999999888876654

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=94.89  E-value=0.0099  Score=37.36  Aligned_cols=37  Identities=43%  Similarity=0.817  Sum_probs=32.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+.+.++.
T Consensus       340 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~  376 (387)
T 2d29_A          340 AIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILK  376 (387)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHH
Confidence            6799999999999999999999999999888766554

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=94.88  E-value=0.011  Score=37.28  Aligned_cols=39  Identities=36%  Similarity=0.801  Sum_probs=34.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI   40 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~   40 (87)
                      ++|+||+.||..++++++.++.++.+....+++.++..+
T Consensus       338 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~  376 (397)
T 3mpi_A          338 AMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMI  376 (397)
T ss_dssp             HHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHH
T ss_pred             HHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHH
Confidence            578999999999999999999999999998888776643

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=94.83  E-value=0.011  Score=37.33  Aligned_cols=37  Identities=76%  Similarity=1.264  Sum_probs=33.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+++.++.
T Consensus       347 a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~  383 (396)
T 1egd_A          347 AVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQR  383 (396)
T ss_dssp             HHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHH
Confidence            5799999999999999999999999999888876654

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=94.83  E-value=0.0095  Score=37.54  Aligned_cols=38  Identities=45%  Similarity=0.957  Sum_probs=33.4

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|+||+.||..++++++..+.++......+.+.++..
T Consensus       346 a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~  383 (394)
T 1ivh_A          346 GIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRL  383 (394)
T ss_dssp             HHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHH
T ss_pred             HHHhcCCccccCCchHHHHHHhcccccccCChHHHHHH
Confidence            57999999999999999999999999988887766543

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=94.76  E-value=0.011  Score=37.47  Aligned_cols=37  Identities=27%  Similarity=0.598  Sum_probs=32.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.+|......+++.++.
T Consensus       353 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~  389 (403)
T 3sf6_A          353 ARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHT  389 (403)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHH
T ss_pred             HHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHH
Confidence            6799999999999999999999999998888776554

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=94.72  E-value=0.013  Score=37.45  Aligned_cols=37  Identities=22%  Similarity=0.573  Sum_probs=32.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+....+.
T Consensus       373 a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~  409 (428)
T 2wbi_A          373 AIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHL  409 (428)
T ss_dssp             HHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHH
T ss_pred             HHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHH
Confidence            6799999999999999999999999988887765543

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=94.69  E-value=0.012  Score=36.90  Aligned_cols=37  Identities=54%  Similarity=0.978  Sum_probs=32.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++..+.++......+...++.
T Consensus       338 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~  374 (383)
T 1buc_A          338 AVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQL  374 (383)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHH
Confidence            5799999999999999999999999998888766554

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=94.68  E-value=0.012  Score=37.05  Aligned_cols=37  Identities=46%  Similarity=0.868  Sum_probs=32.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++.+....+.+.++.
T Consensus       335 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~  371 (391)
T 2vig_A          335 AIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR  371 (391)
T ss_dssp             HHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHH
T ss_pred             HHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHH
Confidence            5799999999999999999999999998888766553

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=94.62  E-value=0.012  Score=36.89  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHh-hHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQ-IYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~-~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++... ...+.+....
T Consensus       347 a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~  384 (395)
T 3mxl_A          347 CLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAV  384 (395)
T ss_dssp             HHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHH
T ss_pred             HHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHH
Confidence            579999999999999999999999999 7777766544

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=94.61  E-value=0.012  Score=37.31  Aligned_cols=37  Identities=35%  Similarity=0.576  Sum_probs=33.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+++.++.
T Consensus       356 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~  392 (403)
T 3p4t_A          356 AVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILT  392 (403)
T ss_dssp             HHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHH
T ss_pred             HHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHH
Confidence            5799999999999999999999999999888876665

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=94.56  E-value=0.012  Score=37.01  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++.+....+......
T Consensus       336 a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~  372 (385)
T 2eba_A          336 ARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHT  372 (385)
T ss_dssp             HHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             HHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHH
Confidence            6799999999999999999999999998888765544

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=94.54  E-value=0.0091  Score=37.66  Aligned_cols=37  Identities=27%  Similarity=0.650  Sum_probs=31.6

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++......+.+.++.
T Consensus       346 a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~  382 (396)
T 3ii9_A          346 ARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHA  382 (396)
T ss_dssp             HHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHH
Confidence            5799999999999999999999998888777665443

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=94.54  E-value=0.012  Score=37.85  Aligned_cols=37  Identities=35%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++.++.++.+....+...++.
T Consensus       379 a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~  415 (436)
T 2ix5_A          379 GRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT  415 (436)
T ss_dssp             HHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHH
T ss_pred             HHHHhCccccccCChHHHHHHHhhcceeecCHHHHHH
Confidence            6799999999999999999999999998877765554

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=94.31  E-value=0.013  Score=36.93  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=32.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||..++++++..+.++......+...++.
T Consensus       339 a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~  375 (392)
T 1siq_A          339 ARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHA  375 (392)
T ss_dssp             HHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             HHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHH
Confidence            5799999999999999999999999998887765554

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=94.23  E-value=0.042  Score=36.38  Aligned_cols=38  Identities=29%  Similarity=0.586  Sum_probs=34.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++|++|+.||..++++++.++.++......+++.++..
T Consensus       396 a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~  433 (541)
T 3djl_A          396 AMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCL  433 (541)
T ss_dssp             HHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             HHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHH
Confidence            57899999999999999999999999999998876653

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=94.19  E-value=0.024  Score=35.60  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhH-HHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEG-TAQI   36 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~-~~~~   36 (87)
                      ++|+||+.||..++++++.++.++......+ ....
T Consensus       340 a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~  375 (394)
T 2rfq_A          340 LFESSGATALANGTPLQRFWRDAHAGRVHAANDPER  375 (394)
T ss_dssp             HHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHH
T ss_pred             HHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchh
Confidence            5799999999999999999999999999887 4443

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=93.94  E-value=0.01  Score=39.69  Aligned_cols=36  Identities=39%  Similarity=0.766  Sum_probs=32.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ   37 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~   37 (87)
                      ++|+||+.||..++++++.++.+++.....+++.+.
T Consensus       385 a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~  420 (607)
T 2uxw_A          385 CIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDIL  420 (607)
T ss_dssp             HHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHH
T ss_pred             HHHHhCCccccCccHHHHHHHhcccceeeCChHHHH
Confidence            689999999999999999999999999888876443

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=93.66  E-value=0.03  Score=35.63  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~   34 (87)
                      ++|+||+.||..++++++.++.++......+.+
T Consensus       368 a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~  400 (422)
T 2jbr_A          368 LMAAAGATSFMDNSELQRLFRDAHMTGAHAYTD  400 (422)
T ss_dssp             HHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTC
T ss_pred             HHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccc
Confidence            679999999999999999999999999888765

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=93.37  E-value=0.034  Score=35.23  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=29.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEG   32 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~   32 (87)
                      ++|++|+.||..++++++.++.++......+
T Consensus       355 a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G  385 (414)
T 2or0_A          355 IFARAGGGALHYKTPMQRFWRDAHAGLAHAV  385 (414)
T ss_dssp             HHTTSCGGGGBTTSSHHHHHHHHHHHHTSGG
T ss_pred             HHHhhChHhhccCCchhHHHHHHHHHHcCCc
Confidence            6899999999999999999999999998877

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=93.05  E-value=0.016  Score=37.00  Aligned_cols=33  Identities=18%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~   34 (87)
                      ++|++|+.||..++++++.++++|.+....+.+
T Consensus       370 a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~  402 (438)
T 3mkh_A          370 VINAVGISAYDLQRPFSDLLNTAVVLPIFDGGN  402 (438)
T ss_dssp             HHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCT
T ss_pred             HHHHhchhhccCCCcHHHHHHHhheeeeecCCh
Confidence            679999999999999999999999999888765

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=92.39  E-value=0.13  Score=32.83  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=28.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHh-hHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQ-IYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~-~~~~~~   34 (87)
                      ++|+||+.||..++++.+.++.++... ...+.+
T Consensus       358 a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~  391 (439)
T 3m9v_A          358 CLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAY  391 (439)
T ss_dssp             HHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCH
T ss_pred             HHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCch
Confidence            679999999999999999999999998 544444

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=90.65  E-value=0.098  Score=35.41  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||..++++++..+.++...+..+.+.+..
T Consensus       395 a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~  431 (659)
T 1w07_A          395 CRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQ  431 (659)
T ss_dssp             HHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHHhcCcccccccCHHHHHHhcceeEEEeCChHHHH
Confidence            6789999999999999999999999999888665543

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=90.45  E-value=0.054  Score=34.59  Aligned_cols=33  Identities=15%  Similarity=0.467  Sum_probs=29.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~   34 (87)
                      ++|+||+.||..++++++.++.++.+....+.+
T Consensus       373 a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~  405 (439)
T 2c12_A          373 AMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGN  405 (439)
T ss_dssp             HHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCT
T ss_pred             HHHhcCceEEcCCChHHHHHHhhhcceeecCCh
Confidence            579999999999999999999999998877644

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=86.07  E-value=0.13  Score=34.81  Aligned_cols=37  Identities=14%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |++++|+.||..++++++..+.++...+..+.+.+..
T Consensus       392 a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~  428 (661)
T 2ddh_A          392 CRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMM  428 (661)
T ss_dssp             HHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHH
T ss_pred             HHHHhCcccccccCcHHHHHHhcceeeEecCchHHHH
Confidence            6789999999999999999999999999887765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d1w07a1	189	a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do	1e-13
d1w07a1	189	a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do	7e-10
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	8e-13
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	1e-10
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	1e-12
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	1e-10
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	1e-12
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	1e-08
d3mdea1	154	a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro	1e-12
d3mdea1	154	a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro	1e-09
d1siqa1	154	a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC	5e-12
d1ukwa1	152	a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro	9e-12
d1ukwa1	152	a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro	8e-10
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	1e-11
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	5e-10
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	4e-11
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	2e-09
d2c12a1	170	a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium	3e-10
d2c12a1	170	a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium	1e-09
d2ddha1	183	a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-	4e-10
d2ddha1	183	a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-	5e-07
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	7e-10
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	3e-08

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.6 bits (146), Expect = 1e-13
 Identities = 12/65 (18%), Positives = 24/65 (36%)

Query: 21  MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
               K          I+    + GG+G+     + +L         YEG   + +L V+R
Sbjct: 105 TAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVAR 164

Query: 81  AIIER 85
            +++ 
Sbjct: 165 FLMKT 169

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.6 bits (120), Expect = 7e-10
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG+G+     + +L         YEG   + +L V
Sbjct: 126 LCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQV 162

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 8e-13
 Identities = 15/43 (34%), Positives = 34/43 (79%)

Query: 42  VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
           + GG G+  DY V++ +RD++++QI EG+ ++ R+++SR++++
Sbjct: 110 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 152

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-10
 Identities = 13/37 (35%), Positives = 28/37 (75%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  DY V++ +RD++++QI EG+ ++ R+++
Sbjct: 110 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILI 146

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 57.2 bits (137), Expect = 1e-12
 Identities = 21/44 (47%), Positives = 33/44 (75%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           + +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++   A++
Sbjct: 107 VQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 150

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 51.9 bits (123), Expect = 1e-10
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 6   FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ 
Sbjct: 110 FGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVT 145

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 57.2 bits (137), Expect = 1e-12
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 16  PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
           P       AK++            I + GG G+  DYPVE+  RDA++ +I EGT++I +
Sbjct: 83  PFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILK 142

Query: 76  LIVSRAIIE 84
           L+++R ++E
Sbjct: 143 LVIARRLLE 151

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.2 bits (111), Expect = 1e-08
 Identities = 17/37 (45%), Positives = 28/37 (75%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  DYPVE+  RDA++ +I EGT++I +L++
Sbjct: 109 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVI 145

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 57.3 bits (137), Expect = 1e-12
 Identities = 39/65 (60%), Positives = 45/65 (69%)

Query: 21  MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
              AK Y            + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R
Sbjct: 88  ASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 147

Query: 81  AIIER 85
             I R
Sbjct: 148 EHIGR 152

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.6 bits (117), Expect = 1e-09
 Identities = 33/41 (80%), Positives = 38/41 (92%)

Query: 1   MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
            +  VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I+
Sbjct: 105 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIII 145

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 5e-12
 Identities = 19/82 (23%), Positives = 35/82 (42%)

Query: 1   MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
           +   +  G   + D    +++   K     +     ++   + GGNG + +Y V +   +
Sbjct: 65  LHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 124

Query: 61  AKIYQIYEGTAQIQRLIVSRAI 82
            +    YEGT  I  LI+ RAI
Sbjct: 125 LEAVNTYEGTHDIHALILGRAI 146

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 54.9 bits (131), Expect = 9e-12
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 36  IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
             + I + GG G+  ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 103 ANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 150

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 49.9 bits (118), Expect = 8e-10
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
           + GG G+  ++PVEKL+RD K+ QIYEGT +IQRLI+
Sbjct: 109 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLII 145

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 1e-11
 Identities = 19/44 (43%), Positives = 33/44 (75%)

Query: 40  IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
           I + GG G+ ++ P E+  RDA+I +IYEGT++IQRL+++  ++
Sbjct: 106 IQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLL 149

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.4 bits (119), Expect = 5e-10
 Identities = 18/36 (50%), Positives = 28/36 (77%)

Query: 6   FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
            GG G+ ++ P E+  RDA+I +IYEGT++IQRL++
Sbjct: 109 LGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVI 144

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-11
 Identities = 19/40 (47%), Positives = 33/40 (82%)

Query: 43  FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
           FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++ RA 
Sbjct: 109 FGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 148

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 17/41 (41%), Positives = 31/41 (75%)

Query: 1   MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
                FGGNG+ +D+P+ + +RDAK+Y+I  GT++++RL++
Sbjct: 104 DGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI 144

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 51.5 bits (122), Expect = 3e-10
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 27  YQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSRAIIER 85
           Y        +   +   G   +  D    +L+ +   Y +++G     R   + R +   
Sbjct: 101 YTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALE 160

Query: 86  N 86
           +
Sbjct: 161 D 161

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 49.9 bits (118), Expect = 1e-09
 Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 1   MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGT------AQIQRLIVVFGGNGFNSDY 52
            +    G   +  D    +L+ +   Y +++G        Q+QR++ +     + + Y
Sbjct: 112 DAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATY 169

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 4e-10
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 24  AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
            K +  +   A I+   +  GG+G++    +  +         +EG   +  L  +R ++
Sbjct: 100 LKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLM 159

Query: 84  ER 85
           + 
Sbjct: 160 KI 161

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (100), Expect = 5e-07
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 5   VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
             GG+G++    +  +         +EG   +  L  
Sbjct: 118 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQT 154

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 50.0 bits (118), Expect = 7e-10
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 43  FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
               G    + VE+  RDAK+ +I EG++++ R+++++  +
Sbjct: 110 LASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 150

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 45.8 bits (107), Expect = 3e-08
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 1   MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
            +  V    G    + VE+  RDAK+ +I EG++++ R+++
Sbjct: 105 TAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVML 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	99.85
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	99.85
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	99.84
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	99.84
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	99.83
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	99.83
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	99.81
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	99.81
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	99.8
d1w07a1	189	Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale	99.79
d2ddha1	183	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {	99.78
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	99.69
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	97.48
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	97.09
d1w07a1	189	Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale	97.07
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	97.05
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	96.88
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	96.86
d2ddha1	183	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {	96.79
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	96.79
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	96.75
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	96.64
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	96.61
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	96.34

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=9.2e-22  Score=109.19  Aligned_cols=76  Identities=33%  Similarity=0.539  Sum_probs=71.6

Q ss_pred             ccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         11 FNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        11 ~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      .+.+.+.....+.+|.+.++...+++..++|++||.||++++|++++|||++..+|++||+|||+++|++++|+.|
T Consensus        77 ~d~~~~~~~~~~~~K~~~~e~~~~v~~~a~q~~Gg~G~~~~~~~~r~~rd~r~~~i~~Gt~ei~~~~ia~~lLr~y  152 (153)
T d1jqia1          77 KDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLRSY  152 (153)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhccCCccCCHHHHHHHHHhHHHhhCCCHHHHHHHHHHHHHHhc
Confidence            4456677788999999999999999999999999999999999999999999999999999999999999999887

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-21  Score=107.33  Aligned_cols=71  Identities=28%  Similarity=0.536  Sum_probs=67.3

Q ss_pred             ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .+....++++|+++++.+.+++..++|++||.||++++|++++|||++...|++||+|||+++|++.+|++
T Consensus        83 ~~~~~~~s~~K~~~te~~~~~~~~a~~~~Gg~G~~~~~~~~r~~rda~~~~i~~Gt~ei~~~~ia~~~lk~  153 (153)
T d1rx0a1          83 KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE  153 (153)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHhhcCcCccCCHHHHHHHHhcchheeCCCHHHHHHHHHHHHhcC
Confidence            45566899999999999999999999999999999999999999999999999999999999999999974

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=108.98  Aligned_cols=76  Identities=24%  Similarity=0.298  Sum_probs=70.7

Q ss_pred             cccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         10 GFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        10 g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      ..+.+.+...+.+++|.++++.+.+++..++|++||.||++++|++++|||++..+|++||+|||+++|++.++|.
T Consensus        74 ~~d~~~~~~~~~~~aK~~a~~~a~~~~~~a~qi~Gg~G~~~~~~l~r~~Rd~r~~~i~eGt~ev~~~~iar~llG~  149 (154)
T d1siqa1          74 LKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI  149 (154)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSC
T ss_pred             hhhhcchhhHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHHHhhcCcHHHHHHHHHHHHhCc
Confidence            3455666788899999999999999999999999999999999999999999999999999999999999999875

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.84  E-value=3.6e-21  Score=106.85  Aligned_cols=75  Identities=53%  Similarity=0.759  Sum_probs=70.4

Q ss_pred             cCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         12 NSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        12 ~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      +.+.+...+.+++|++.++.+.+++..+++++||.||+++++++++|||++..+|++||+||++++|++++||+|
T Consensus        79 ~~~~~~~~~~~~~K~~~~e~~~~v~~~~~~~~Gg~G~~~~~~l~r~~Rd~~~~~i~~Gt~ev~~~~iar~~lg~~  153 (154)
T d3mdea1          79 DSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRY  153 (154)
T ss_dssp             HTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHTTT
T ss_pred             ccccchhhhhhhhhHHhhhHHHHHHHHHHHHHhhhhhccCCHHHHHHHHhhhhheeCCcHHHHHHHHHHHHhccc
Confidence            445555678889999999999999999999999999999999999999999999999999999999999999987

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.4e-21  Score=105.18  Aligned_cols=76  Identities=30%  Similarity=0.515  Sum_probs=69.7

Q ss_pred             cccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         10 GFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        10 g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .++.+.+.....+++|+++++...+++..+++++||.||++++|++++|||++..+|++||+|||+++|++.++++
T Consensus        76 ~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~i~Gg~G~~~~~~l~r~~rd~~~~~i~~Gt~ei~~~~Iar~l~~~  151 (151)
T d1ivha1          76 ACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD  151 (151)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCceeccccHHHHHHHHhhhheeecCcHHHHHHHHHHHHhcC
Confidence            3455566677889999999999999999999999999999999999999999999999999999999999988763

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.2e-20  Score=104.60  Aligned_cols=75  Identities=31%  Similarity=0.568  Sum_probs=70.0

Q ss_pred             ccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337         11 FNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER   85 (87)
Q Consensus        11 ~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~   85 (87)
                      .+++.+....++++|+++++.+.++++.++|++||.||++++|++++|||++..+|++||+|||+++|++.+|+.
T Consensus        78 ~~~~~~~~~~~s~~K~~~t~~~~~~~~~a~~l~Gg~G~~~~~~l~~~~rda~~~~i~~Gt~ei~~~~iar~ll~~  152 (153)
T d2d29a1          78 KDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA  152 (153)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred             HHCCCcchHHHHHHHHHhhHHhhHHHHHHHHHHhcceecCCChHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhh
Confidence            345566678899999999999999999999999999999999999999999999999999999999999999874

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=99.81  E-value=1.7e-20  Score=103.67  Aligned_cols=73  Identities=33%  Similarity=0.519  Sum_probs=68.4

Q ss_pred             cCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         12 NSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        12 ~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .++.+.....+++|+++++.+.+++..+++++||.||+++++++++|||+++.+|++||+|||+++|++.+|+
T Consensus        79 ~~~~~~~~~~~~aK~~~te~~~~~~~~~~~~~Gg~G~~~e~~~~r~~rd~r~~~i~~Gt~ei~~~~iar~ll~  151 (151)
T d1buca1          79 QEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR  151 (151)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred             hcCccccccchhHHHHHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHhhhhhhhcCcHHHHHHHHHHHHhC
Confidence            3455667889999999999999999999999999999999999999999999999999999999999999874

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=2.1e-20  Score=103.45  Aligned_cols=75  Identities=39%  Similarity=0.598  Sum_probs=69.5

Q ss_pred             cccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         10 GFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        10 g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      .++++.+.....+++|++.++.+.+++..++|++|+.||.+++|++++|||++..+|++||+|||+++|++++|+
T Consensus        77 ~~d~g~~~~~~~s~~K~~~te~~~~v~~~a~~l~Gg~g~~~d~~l~~~~rda~~~~i~~Gt~ev~~~~ia~~lL~  151 (152)
T d1ukwa1          77 LADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA  151 (152)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred             HHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHC
Confidence            344555667788999999999999999999999999999999999999999999999999999999999999986

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=99.80  E-value=1.1e-19  Score=100.83  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             ccCCCh-HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337         11 FNSDYP-VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE   84 (87)
Q Consensus        11 ~~~~~~-~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~   84 (87)
                      ++++.+ .....+++|.++++.+.++++.++|++||.||++++|++++|||++..+|++||+|||+++|++.+|+
T Consensus        77 ~d~~~~~~~~~~~~~K~~~~~~~~~v~~~a~qi~Gg~G~~~~~~l~r~~rda~~~~i~eGt~ei~~~~i~r~~lg  151 (153)
T d1r2ja1          77 WDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA  151 (153)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred             HhhccccchhhcccccccccchhhHHHHHHHHhcCCccceehhhHHHHHhhcccceeecCCHHHHHHHHHHHHhC
Confidence            344433 34567889999999999999999999999999999999999999999999999999999999999986

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.8e-19  Score=102.98  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS   87 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~   87 (87)
                      ....++.+|.++++...++++.|+|++||.||+++++++++|||+++..|++|++||++..|++.+++.|+
T Consensus       101 ~~~~~a~~K~~at~~a~~~~~~a~qi~GG~Gy~~~~~i~r~~rD~~~~~i~EGtn~Vl~~~iar~llk~~~  171 (189)
T d1w07a1         101 AHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVA  171 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhcCeeeCCCChHHHHHhcCcccceecCHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999998764

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.1e-19  Score=102.25  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=66.7

Q ss_pred             HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337         17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN   86 (87)
Q Consensus        17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~   86 (87)
                      ....++++|.++++.+.++++.|+|++||.||+.++++++++||+++..|++|++||++..+++.+++.|
T Consensus        93 ~~~~~s~~K~~~te~a~~~~~~a~qi~GG~Gy~~~~~i~~~~rD~~~~~i~EGt~~vl~~~~ar~llk~~  162 (183)
T d2ddha1          93 LHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIY  162 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhHHhhcccceeeeCcHHHHHHHHHHHHHHHH
Confidence            4456899999999999999999999999999999999999999999999999999999999999999876

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=99.69  E-value=8.3e-18  Score=94.73  Aligned_cols=65  Identities=14%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337         19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII   83 (87)
Q Consensus        19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l   83 (87)
                      ..++++|+++++.+.++++.++|++||.||++++|++++|||++..+|++||+++++..+.++++
T Consensus        93 ~~a~~aK~~a~e~a~~v~~~a~qv~Gg~G~~~~~~ler~~RDar~~~i~eGt~~~~~~~~i~r~~  157 (170)
T d2c12a1          93 EMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM  157 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHhhhhheeCCCcHhHHHHHHHHHH
Confidence            35688899999999999999999999999999999999999999999999999887766555443

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.1e-05  Score=42.50  Aligned_cols=47  Identities=30%  Similarity=0.557  Sum_probs=38.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH---HHHHhcCcc
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL---IVVFGGNGF   48 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a---~~~~G~~g~   48 (87)
                      |+|+||+.||.+++++++.++++|.+....+++.++.-   -.+.|-..|
T Consensus       103 a~qi~Gg~G~~~~~~l~r~~Rd~r~~~i~eGt~ev~~~~iar~llG~~af  152 (154)
T d1siqa1         103 ARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF  152 (154)
T ss_dssp             HHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHhhcCCCCCCcHHHHHHHHHhHHHhhcCcHHHHHHHHHHHHhCcccc
Confidence            68999999999999999999999999998888766542   245565544

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=8.8e-05  Score=39.64  Aligned_cols=37  Identities=46%  Similarity=0.885  Sum_probs=34.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|+||+.||.+++++++.+.+++......+++.++.
T Consensus       105 a~q~~Gg~G~~~~~~~~r~~rd~r~~~i~~Gt~ei~~  141 (153)
T d1jqia1         105 AIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQR  141 (153)
T ss_dssp             HHHHHGGGGTBTTSSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHHhhccCCccCCHHHHHHHHHhHHHhhCCCHHHHH
Confidence            6799999999999999999999999999999887765

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.07  E-value=8.9e-05  Score=41.07  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=34.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||.+++++++..++++.+.+..|++.+..
T Consensus       123 a~qi~GG~Gy~~~~~i~r~~rD~~~~~i~EGtn~Vl~  159 (189)
T d1w07a1         123 CRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQ  159 (189)
T ss_dssp             HHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHHhcCeeeCCCChHHHHHhcCcccceecCHHHHHH
Confidence            6899999999999999999999999999999987765

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=8.5e-05  Score=39.73  Aligned_cols=37  Identities=35%  Similarity=0.739  Sum_probs=33.8

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|++|+.||.+++++++.++++|......+++.++.
T Consensus       107 a~~~~Gg~G~~~~~~~~r~~rda~~~~i~~Gt~ei~~  143 (153)
T d1rx0a1         107 ALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMR  143 (153)
T ss_dssp             HHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHH
T ss_pred             HHHHhhcCcCccCCHHHHHHHHhcchheeCCCHHHHH
Confidence            6899999999999999999999999999888887765

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=96.88  E-value=4.6e-05  Score=41.82  Aligned_cols=33  Identities=15%  Similarity=0.467  Sum_probs=30.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA   34 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~   34 (87)
                      |+|++|+.||.+++++++.++++|++....+++
T Consensus       113 a~qv~Gg~G~~~~~~ler~~RDar~~~i~eGt~  145 (170)
T d2c12a1         113 AMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGN  145 (170)
T ss_dssp             HHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCT
T ss_pred             HHHhhccCccccCCHHHHHHHHhhhhheeCCCc
Confidence            689999999999999999999999998877764

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00016  Score=38.57  Aligned_cols=38  Identities=45%  Similarity=0.957  Sum_probs=33.7

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      ++++||+.||..++++++.+++++.+....+++.++..
T Consensus       105 a~~i~Gg~G~~~~~~l~r~~rd~~~~~i~~Gt~ei~~~  142 (151)
T d1ivha1         105 GIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRL  142 (151)
T ss_dssp             HHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHH
T ss_pred             HHhccCCceeccccHHHHHHHHhhhheeecCcHHHHHH
Confidence            67899999999999999999999999988888776643

>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=7.1e-05  Score=41.34  Aligned_cols=37  Identities=14%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      |+|+|||.||.+++++++..++++...+..|.+.+..
T Consensus       115 a~qi~GG~Gy~~~~~i~~~~rD~~~~~i~EGt~~vl~  151 (183)
T d2ddha1         115 CRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMM  151 (183)
T ss_dssp             HHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHH
T ss_pred             HHHHhcCCccCccccchhHHhhcccceeeeCcHHHHH
Confidence            6899999999999999999999999999999887664

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=96.79  E-value=0.00022  Score=38.16  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=31.5

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      ++|++|+.||.++++.++..++++.+....+++.++.
T Consensus       106 a~qi~Gg~G~~~~~~l~r~~rda~~~~i~eGt~ei~~  142 (153)
T d1r2ja1         106 AAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCR  142 (153)
T ss_dssp             HHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHH
T ss_pred             HHHhcCCccceehhhHHHHHhhcccceeecCCHHHHH
Confidence            6789999999999999999999999999888876654

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.75  E-value=0.00027  Score=37.65  Aligned_cols=38  Identities=84%  Similarity=1.351  Sum_probs=34.1

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      +++++|+.||.++++.++.+++++......+++.++..
T Consensus       106 ~~~~~Gg~G~~~~~~l~r~~Rd~~~~~i~~Gt~ev~~~  143 (154)
T d3mdea1         106 AVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRI  143 (154)
T ss_dssp             HHHHTGGGGSBTTSSHHHHHHHHGGGGTTTSCHHHHHH
T ss_pred             HHHHHhhhhhccCCHHHHHHHHhhhhheeCCcHHHHHH
Confidence            67899999999999999999999999999988877653

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=96.64  E-value=0.00033  Score=37.08  Aligned_cols=37  Identities=54%  Similarity=0.978  Sum_probs=34.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR   38 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~   38 (87)
                      +++++|+.||.++.++++.+.++|.+....+++.++.
T Consensus       106 ~~~~~Gg~G~~~e~~~~r~~rd~r~~~i~~Gt~ei~~  142 (151)
T d1buca1         106 AVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQL  142 (151)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHH
T ss_pred             HHHHhhccCcccCCHHHHHHHHhhhhhhhcCcHHHHH
Confidence            6789999999999999999999999999999888775

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.00036  Score=37.13  Aligned_cols=38  Identities=45%  Similarity=0.830  Sum_probs=34.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      |+++||+.||.+++++++.+.+++......+++.++..
T Consensus       106 a~~l~Gg~G~~~~~~l~~~~rda~~~~i~~Gt~ei~~~  143 (153)
T d2d29a1         106 AIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKL  143 (153)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHH
T ss_pred             HHHHHhcceecCCChHHHHHHHhhhhhccCCCHHHHHH
Confidence            68999999999999999999999999999888876654

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.00064  Score=36.04  Aligned_cols=38  Identities=55%  Similarity=0.986  Sum_probs=34.2

Q ss_pred             cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337          2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL   39 (87)
Q Consensus         2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a   39 (87)
                      |+|++|+.||.+|+++++.+..++......+++.++..
T Consensus       106 a~~l~Gg~g~~~d~~l~~~~rda~~~~i~~Gt~ev~~~  143 (152)
T d1ukwa1         106 AIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRL  143 (152)
T ss_dssp             HHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHH
T ss_pred             HHHHhCCcccccCCHHHHHHHHHhhhhhcCCcHHHHHH
Confidence            68999999999999999999999999999888877663